| Year |
Citation |
Score |
| 2020 |
Dibble JJ, McGrath SJ, Ponting CP. Genetic Risk Factors of ME/CFS: A Critical Review. Human Molecular Genetics. PMID 32744306 DOI: 10.1093/Hmg/Ddaa169 |
0.309 |
|
| 2020 |
Bretherick AD, Canela-Xandri O, Joshi PK, Clark DW, Rawlik K, Boutin TS, Zeng Y, Amador C, Navarro P, Rudan I, Wright AF, Campbell H, Vitart V, Hayward C, Wilson JF, ... ... Ponting CP, et al. Linking protein to phenotype with Mendelian Randomization detects 38 proteins with causal roles in human diseases and traits. Plos Genetics. 16: e1008785. PMID 32628676 DOI: 10.1371/Journal.Pgen.1008785 |
0.33 |
|
| 2020 |
Batiuk MY, Martirosyan A, Wahis J, de Vin F, Marneffe C, Kusserow C, Koeppen J, Viana JF, Oliveira JF, Voet T, Ponting CP, Belgard TG, Holt MG. Identification of region-specific astrocyte subtypes at single cell resolution. Nature Communications. 11: 1220. PMID 32139688 DOI: 10.1038/S41467-019-14198-8 |
0.765 |
|
| 2019 |
Dhalla F, Baran-Gale J, Maio S, Chappell L, Holländer GA, Ponting CP. Biologically indeterminate yet ordered promiscuous gene expression in single medullary thymic epithelial cells. The Embo Journal. e101828. PMID 31657037 DOI: 10.15252/Embj.2019101828 |
0.364 |
|
| 2019 |
Sanchez-Pulido L, Ponting CP. Hexa-Longin domain scaffolds for inter-Rab signalling. Bioinformatics (Oxford, England). PMID 31562761 DOI: 10.1093/Bioinformatics/Btz739 |
0.392 |
|
| 2019 |
Sirey TM, Roberts K, Haerty W, Bedoya-Reina O, Rogatti-Granados S, Tan JY, Li N, Heather LC, Carter RN, Cooper S, Finch AJ, Wills J, Morton NM, Marques AC, Ponting CP. The long non-coding RNA is a post transcriptional regulator of mitochondrial complex I catalytic activity. Elife. 8. PMID 31045494 DOI: 10.7554/Elife.45051 |
0.321 |
|
| 2019 |
Akay A, Jordan D, Navarro IC, Wrzesinski T, Ponting CP, Miska EA, Haerty W. Identification of functional long non-coding RNAs in C. elegans. Bmc Biology. 17: 14. PMID 30777050 DOI: 10.1186/S12915-019-0635-7 |
0.335 |
|
| 2019 |
Köhler K, Sanchez-Pulido L, Höfer V, Marko A, Ponting CP, Snijders AP, Feederle R, Schepers A, Boos D. The Cdk8/19-cyclin C transcription regulator functions in genome replication through metazoan Sld7. Plos Biology. 17: e2006767. PMID 30695077 DOI: 10.1371/Journal.Pbio.2006767 |
0.404 |
|
| 2019 |
Clifford H, Dulneva A, Ponting CP, Haerty W, Becker EBE. A gene expression signature in developing Purkinje cells predicts autism and intellectual disability co-morbidity status. Scientific Reports. 9: 485. PMID 30679692 DOI: 10.1038/S41598-018-37284-1 |
0.327 |
|
| 2018 |
Handel AE, Shikama-Dorn N, Zhanybekova S, Maio S, Graedel AN, Zuklys S, Ponting CP, Holländer GA. Comprehensively Profiling the Chromatin Architecture of Tissue Restricted Antigen Expression in Thymic Epithelial Cells Over Development. Frontiers in Immunology. 9: 2120. PMID 30283453 DOI: 10.3389/Fimmu.2018.02120 |
0.327 |
|
| 2018 |
Pavlaki I, Alammari F, Sun B, Clark N, Sirey T, Lee S, Woodcock DJ, Ponting CP, Szele FG, Vance KW. The long non-coding RNA promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis. The Embo Journal. PMID 29661885 DOI: 10.15252/Embj.201798219 |
0.404 |
|
| 2017 |
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, ... ... Ponting CP, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/Elife.27041 |
0.3 |
|
| 2017 |
Sanchez-Pulido L, Ponting CP. TMEM132: an ancient architecture of cohesin and immunoglobulin domains define a new family of neural adhesion molecules. Bioinformatics (Oxford, England). PMID 29088312 DOI: 10.1093/Bioinformatics/Btx689 |
0.371 |
|
| 2017 |
Ponting CP. Biological function in the twilight zone of sequence conservation. Bmc Biology. 15: 71. PMID 28814299 DOI: 10.1186/S12915-017-0411-5 |
0.384 |
|
| 2017 |
Gallone G, Haerty W, Disanto G, Ramagopalan SV, Ponting CP, Berlanga-Taylor AJ. Identification of genetic variants affecting vitamin D receptor binding and associations with autoimmune disease. Human Molecular Genetics. PMID 28335003 DOI: 10.1093/Hmg/Ddx092 |
0.323 |
|
| 2017 |
Macaulay IC, Ponting CP, Voet T. Single-Cell Multiomics: Multiple Measurements from Single Cells. Trends in Genetics : Tig. PMID 28089370 DOI: 10.1016/J.Tig.2016.12.003 |
0.301 |
|
| 2017 |
Haerty W, Ponting C. Identification of functional non-coding transcribed sequences in Eukaryotes species Neuropeptides. 65: 141. DOI: 10.1016/J.Npep.2017.02.043 |
0.34 |
|
| 2016 |
Handel AE, Gallone G, Cader MZ, Ponting CP. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain. Human Molecular Genetics. PMID 27798116 DOI: 10.1093/Hmg/Ddw369 |
0.388 |
|
| 2016 |
Macaulay IC, Teng MJ, Haerty W, Kumar P, Ponting CP, Voet T. Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq. Nature Protocols. 11: 2081-2103. PMID 27685099 DOI: 10.1038/Nprot.2016.138 |
0.385 |
|
| 2016 |
Žuklys S, Handel A, Zhanybekova S, Govani F, Keller M, Maio S, Mayer CE, Teh HY, Hafen K, Gallone G, Barthlott T, Ponting CP, Holländer GA. Foxn1 regulates key target genes essential for T cell development in postnatal thymic epithelial cells. Nature Immunology. PMID 27548434 DOI: 10.1038/Ni.3537 |
0.364 |
|
| 2016 |
Chan MC, Ilott NE, Schödel J, Sims D, Tumber A, Lippl K, Mole DR, Pugh CW, Ratcliffe PJ, Ponting CP, Schofield CJ. Tuning the transcriptional response to hypoxia by inhibiting HIF prolyl- and asparaginyl-hydroxylases. The Journal of Biological Chemistry. PMID 27502280 DOI: 10.1074/Jbc.M116.749291 |
0.31 |
|
| 2016 |
Brazão TF, Johnson JS, Müller J, Heger A, Ponting CP, Tybulewicz VL. Long non-coding RNAs in B cell development and activation. Blood. PMID 27381906 DOI: 10.1182/Blood-2015-11-680843 |
0.312 |
|
| 2016 |
Fenwick AL, Kliszczak M, Cooper F, Murray J, Sanchez-Pulido L, Twigg SR, Goriely A, McGowan SJ, Miller KA, Taylor IB, Logan C, Bozdogan S, Danda S, Dixon J, ... ... Ponting CP, et al. Mutations in CDC45, Encoding an Essential Component of the Pre-initiation Complex, Cause Meier-Gorlin Syndrome and Craniosynostosis. American Journal of Human Genetics. PMID 27374770 DOI: 10.1016/J.Ajhg.2016.05.019 |
0.322 |
|
| 2016 |
Sanchez-Pulido L, Ponting CP. Vasohibins: new transglutaminase-like cysteine proteases possessing a non-canonical Cys-His-Ser catalytic triad. Bioinformatics (Oxford, England). PMID 26794318 DOI: 10.1093/Bioinformatics/Btv761 |
0.362 |
|
| 2016 |
Angermueller C, Clark SJ, Lee HJ, Macaulay IC, Teng MJ, Hu TX, Krueger F, Smallwood SA, Ponting CP, Voet T, Kelsey G, Stegle O, Reik W. Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity. Nature Methods. PMID 26752769 DOI: 10.1038/Nmeth.3728 |
0.381 |
|
| 2015 |
Pembroke WG, Babbs A, Davies K, Ponting CP, Oliver PL. Temporal transcriptomics suggest that twin-peaking genes reset the clock. Elife. 4. PMID 26523393 DOI: 10.7554/Elife.10518 |
0.353 |
|
| 2015 |
Chung G, Rose AM, Petalcorin MI, Martin JS, Kessler Z, Sanchez-Pulido L, Ponting CP, Yanowitz JL, Boulton SJ. REC-1 and HIM-5 distribute meiotic crossovers and function redundantly in meiotic double-strand break formation in Caenorhabditis elegans. Genes & Development. 29: 1969-79. PMID 26385965 DOI: 10.1101/Gad.266056.115 |
0.362 |
|
| 2015 |
Wilson NK, Kent DG, Buettner F, Shehata M, Macaulay IC, Calero-Nieto FJ, Sánchez Castillo M, Oedekoven CA, Diamanti E, Schulte R, Ponting CP, Voet T, Caldas C, Stingl J, Green AR, et al. Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations. Cell Stem Cell. 16: 712-24. PMID 26004780 DOI: 10.1016/J.Stem.2015.04.004 |
0.311 |
|
| 2015 |
Wehrspaun CC, Haerty W, Ponting CP. Microglia recapitulate a hematopoietic master regulator network in the aging human frontal cortex. Neurobiology of Aging. 36: 2443.e9-2443.e20. PMID 26002684 DOI: 10.1016/J.Neurobiolaging.2015.04.008 |
0.331 |
|
| 2015 |
Sims D, Ponting CP, Heger A. CGAT: a model for immersive personalized training in computational genomics. Briefings in Functional Genomics. PMID 25981124 DOI: 10.1093/Bfgp/Elv021 |
0.318 |
|
| 2015 |
Macaulay IC, Haerty W, Kumar P, Li YI, Hu TX, Teng MJ, Goolam M, Saurat N, Coupland P, Shirley LM, Smith M, Van der Aa N, Banerjee R, Ellis PD, Quail MA, ... ... Ponting CP, et al. G&T-seq: parallel sequencing of single-cell genomes and transcriptomes. Nature Methods. 12: 519-22. PMID 25915121 DOI: 10.1038/Nmeth.3370 |
0.394 |
|
| 2015 |
Haerty W, Ponting CP. Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci. Rna (New York, N.Y.). 21: 333-46. PMID 25589248 DOI: 10.1261/Rna.047324.114 |
0.39 |
|
| 2015 |
Li YI, Sanchez-Pulido L, Haerty W, Ponting CP. RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts. Genome Research. 25: 1-13. PMID 25524026 DOI: 10.1101/Gr.181990.114 |
0.43 |
|
| 2015 |
Parkinson NJ, Roddis M, Ferneyhough B, Zhang G, Marsden AJ, Maslau S, Sanchez-Pearson Y, Barthlott T, Humphreys IR, Ladell K, Price DA, Ponting CP, Hollander G, Fischer MD. Violation of the 12/23 rule of genomic V(D)J recombination is common in lymphocytes. Genome Research. 25: 226-34. PMID 25367293 DOI: 10.1101/Gr.179770.114 |
0.414 |
|
| 2014 |
Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Ponting CP, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27 |
0.662 |
|
| 2014 |
Sanchez-Pulido L, Ponting CP. TM6SF2 and MAC30, new enzyme homologs in sterol metabolism and common metabolic disease. Frontiers in Genetics. 5: 439. PMID 25566323 DOI: 10.3389/Fgene.2014.00439 |
0.391 |
|
| 2014 |
Rajan P, Stockley J, Sudbery IM, Fleming JT, Hedley A, Kalna G, Sims D, Ponting CP, Heger A, Robson CN, McMenemin RM, Pedley ID, Leung HY. Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer. Bmc Cancer. 14: 977. PMID 25519703 DOI: 10.1186/1471-2407-14-977 |
0.319 |
|
| 2014 |
Tan JY, Vance KW, Varela MA, Sirey T, Watson LM, Curtis HJ, Marinello M, Alves S, Steinkraus BR, Cooper S, Nesterova T, Brockdorff N, Fulga TA, Brice A, Sittler A, ... ... Ponting CP, et al. Cross-talking noncoding RNAs contribute to cell-specific neurodegeneration in SCA7. Nature Structural & Molecular Biology. 21: 955-61. PMID 25306109 DOI: 10.1038/Nsmb.2902 |
0.338 |
|
| 2014 |
Sansom SN, Shikama-Dorn N, Zhanybekova S, Nusspaumer G, Macaulay IC, Deadman ME, Heger A, Ponting CP, Holländer GA. Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia. Genome Research. 24: 1918-31. PMID 25224068 DOI: 10.1101/Gr.171645.113 |
0.364 |
|
| 2014 |
Oliver PL, Chodroff RA, Gosal A, Edwards B, Cheung AF, Gomez-Rodriguez J, Elliot G, Garrett LJ, Lickiss T, Szele F, Green ED, Molnár Z, Ponting CP. Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype. Cerebral Cortex (New York, N.Y. : 1991). PMID 25209608 DOI: 10.1093/Cercor/Bhu196 |
0.385 |
|
| 2014 |
Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Ponting CP, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/Nature13726 |
0.396 |
|
| 2014 |
White SA, Buscaino A, Sanchez-Pulido L, Ponting CP, Nowicki MW, Allshire RC. The RFTS domain of Raf2 is required for Cul4 interaction and heterochromatin integrity in fission yeast. Plos One. 9: e104161. PMID 25090107 DOI: 10.1371/Journal.Pone.0104161 |
0.355 |
|
| 2014 |
Rands CM, Meader S, Ponting CP, Lunter G. 8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage. Plos Genetics. 10: e1004525. PMID 25057982 DOI: 10.1371/Journal.Pgen.1004525 |
0.45 |
|
| 2014 |
Vance KW, Ponting CP. Transcriptional regulatory functions of nuclear long noncoding RNAs. Trends in Genetics : Tig. 30: 348-55. PMID 24974018 DOI: 10.1016/J.Tig.2014.06.001 |
0.379 |
|
| 2014 |
Rainger J, Pehlivan D, Johansson S, Bengani H, Sanchez-Pulido L, Williamson KA, Ture M, Barker H, Rosendahl K, Spranger J, Horn D, Meynert A, Floyd JA, Prescott T, Anderson CA, ... ... Ponting CP, et al. Monoallelic and biallelic mutations in MAB21L2 cause a spectrum of major eye malformations. American Journal of Human Genetics. 94: 915-23. PMID 24906020 DOI: 10.1016/J.Ajhg.2014.05.005 |
0.321 |
|
| 2014 |
Booth DG, Takagi M, Sanchez-Pulido L, Petfalski E, Vargiu G, Samejima K, Imamoto N, Ponting CP, Tollervey D, Earnshaw WC, Vagnarelli P. Ki-67 is a PP1-interacting protein that organises the mitotic chromosome periphery. Elife. 3: e01641. PMID 24867636 DOI: 10.7554/Elife.01641 |
0.317 |
|
| 2014 |
Lu M, Zak J, Chen S, Sanchez-Pulido L, Severson DT, Endicott J, Ponting CP, Schofield CJ, Lu X. A code for RanGDP binding in ankyrin repeats defines a nuclear import pathway. Cell. 157: 1130-45. PMID 24855949 DOI: 10.1016/J.Cell.2014.05.006 |
0.346 |
|
| 2014 |
Marques AC, Ponting CP. Intergenic lncRNAs and the evolution of gene expression. Current Opinion in Genetics & Development. 27: 48-53. PMID 24852186 DOI: 10.1016/J.Gde.2014.03.009 |
0.452 |
|
| 2014 |
Haerty W, Ponting CP. No gene in the genome makes sense except in the light of evolution. Annual Review of Genomics and Human Genetics. 15: 71-92. PMID 24773316 DOI: 10.1146/Annurev-Genom-090413-025621 |
0.443 |
|
| 2014 |
Wehrspaun CC, Ponting CP, Marques AC. Brain-expressed 3'UTR extensions strengthen miRNA cross-talk between ion channel/transporter encoding mRNAs. Frontiers in Genetics. 5: 41. PMID 24616735 DOI: 10.3389/Fgene.2014.00041 |
0.305 |
|
| 2014 |
Vance KW, Sansom SN, Lee S, Chalei V, Kong L, Cooper SE, Oliver PL, Ponting CP. The long non-coding RNA Paupar regulates the expression of both local and distal genes. The Embo Journal. 33: 296-311. PMID 24488179 DOI: 10.1002/Embj.201386225 |
0.391 |
|
| 2014 |
Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP. Sequencing depth and coverage: key considerations in genomic analyses. Nature Reviews. Genetics. 15: 121-32. PMID 24434847 DOI: 10.1038/Nrg3642 |
0.396 |
|
| 2014 |
Sims D, Ilott NE, Sansom SN, Sudbery IM, Johnson JS, Fawcett KA, Berlanga-Taylor AJ, Luna-Valero S, Ponting CP, Heger A. CGAT: computational genomics analysis toolkit. Bioinformatics (Oxford, England). 30: 1290-1. PMID 24395753 DOI: 10.1093/Bioinformatics/Btt756 |
0.394 |
|
| 2014 |
Bassett AR, Tibbit C, Ponting CP, Liu JL. Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9. Biology Open. 3: 42-9. PMID 24326186 DOI: 10.1242/Bio.20137120 |
0.354 |
|
| 2014 |
Rajan P, Sudbery IM, Villasevil ME, Mui E, Fleming J, Davis M, Ahmad I, Edwards J, Sansom OJ, Sims D, Ponting CP, Heger A, McMenemin RM, Pedley ID, Leung HY. Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy. European Urology. 66: 32-9. PMID 24054872 DOI: 10.1016/J.Eururo.2013.08.011 |
0.307 |
|
| 2013 |
Marques AC, Hughes J, Graham B, Kowalczyk MS, Higgs DR, Ponting CP. Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs. Genome Biology. 14: R131. PMID 24289259 DOI: 10.1186/Gb-2013-14-11-R131 |
0.365 |
|
| 2013 |
Belgard TG, Montiel JF, Wang WZ, GarcÃa-Moreno F, Margulies EH, Ponting CP, Molnár Z. Adult pallium transcriptomes surprise in not reflecting predicted homologies across diverse chicken and mouse pallial sectors. Proceedings of the National Academy of Sciences of the United States of America. 110: 13150-5. PMID 23878249 DOI: 10.1073/Pnas.1307444110 |
0.775 |
|
| 2013 |
Sanchez-Pulido L, Ponting CP. Tiki, at the head of a new superfamily of enzymes. Bioinformatics (Oxford, England). 29: 2371-4. PMID 23868957 DOI: 10.1093/Bioinformatics/Btt412 |
0.363 |
|
| 2013 |
Young RS, Ponting CP. Identification and function of long non-coding RNAs. Essays in Biochemistry. 54: 113-26. PMID 23829531 DOI: 10.1042/Bse0540113 |
0.383 |
|
| 2013 |
Bassett AR, Tibbit C, Ponting CP, Liu JL. Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. Cell Reports. 4: 220-8. PMID 23827738 DOI: 10.1016/J.Celrep.2013.06.020 |
0.315 |
|
| 2013 |
Heger A, Webber C, Goodson M, Ponting CP, Lunter G. GAT: a simulation framework for testing the association of genomic intervals. Bioinformatics (Oxford, England). 29: 2046-8. PMID 23782611 DOI: 10.1093/Bioinformatics/Btt343 |
0.377 |
|
| 2013 |
Noh HJ, Ponting CP, Boulding HC, Meader S, Betancur C, Buxbaum JD, Pinto D, Marshall CR, Lionel AC, Scherer SW, Webber C. Network topologies and convergent aetiologies arising from deletions and duplications observed in individuals with autism. Plos Genetics. 9: e1003523. PMID 23754953 DOI: 10.1371/Journal.Pgen.1003523 |
0.324 |
|
| 2013 |
Babbs C, Roberts NA, Sanchez-Pulido L, McGowan SJ, Ahmed MR, Brown JM, Sabry MA, Bentley DR, McVean GA, Donnelly P, Gileadi O, Ponting CP, Higgs DR, Buckle VJ. Homozygous mutations in a predicted endonuclease are a novel cause of congenital dyserythropoietic anemia type I. Haematologica. 98: 1383-7. PMID 23716552 DOI: 10.3324/Haematol.2013.089490 |
0.341 |
|
| 2013 |
Haerty W, Ponting CP. Mutations within lncRNAs are effectively selected against in fruitfly but not in human. Genome Biology. 14: R49. PMID 23710818 DOI: 10.1186/Gb-2013-14-5-R49 |
0.399 |
|
| 2013 |
Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM. Sixty years of genome biology. Genome Biology. 14: 113. PMID 23651518 DOI: 10.1186/Gb-2013-14-4-113 |
0.349 |
|
| 2013 |
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, ... ... Ponting CP, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027 |
0.447 |
|
| 2013 |
Li YI, Kong L, Ponting CP, Haerty W. Rapid evolution of Beta-keratin genes contribute to phenotypic differences that distinguish turtles and birds from other reptiles. Genome Biology and Evolution. 5: 923-33. PMID 23576313 DOI: 10.1093/Gbe/Evt060 |
0.364 |
|
| 2013 |
Ilott NE, Ponting CP. Predicting long non-coding RNAs using RNA sequencing. Methods (San Diego, Calif.). 63: 50-9. PMID 23541739 DOI: 10.1016/J.Ymeth.2013.03.019 |
0.369 |
|
| 2013 |
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, ... ... Ponting CP, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28 |
0.752 |
|
| 2013 |
Long HK, Sims D, Heger A, Blackledge NP, Kutter C, Wright ML, Grützner F, Odom DT, Patient R, Ponting CP, Klose RJ. Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates. Elife. 2: e00348. PMID 23467541 DOI: 10.7554/Elife.00348 |
0.304 |
|
| 2013 |
Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, ... ... Ponting CP, et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. Bmc Genomics. 14: 95. PMID 23402223 DOI: 10.1186/1471-2164-14-95 |
0.704 |
|
| 2012 |
Ponting CP. Loaded dice for human genome mutation. Cell. 151: 1399-400. PMID 23260131 DOI: 10.1016/J.Cell.2012.12.002 |
0.309 |
|
| 2012 |
Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ. KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands. Elife. 1: e00205. PMID 23256043 DOI: 10.7554/Elife.00205 |
0.369 |
|
| 2012 |
Marques AC, Tan J, Lee S, Kong L, Heger A, Ponting CP. Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs. Genome Biology. 13: R102. PMID 23153069 DOI: 10.1186/Gb-2012-13-11-R102 |
0.383 |
|
| 2012 |
Goodson M, Rust MB, Witke W, Bannerman D, Mott R, Ponting CP, Flint J. Cofilin-1: a modulator of anxiety in mice. Plos Genetics. 8: e1002970. PMID 23055942 DOI: 10.1371/Journal.Pgen.1002970 |
0.328 |
|
| 2012 |
Ponting CP, Oliver PL. Brain, know thy transcriptome, know thyself. Neuron. 75: 543-5. PMID 22920245 DOI: 10.1016/J.Neuron.2012.08.005 |
0.301 |
|
| 2012 |
Muñoz IM, MacArtney T, Sanchez-Pulido L, Ponting CP, Rocha S, Rouse J. Family with sequence similarity 60A (FAM60A) protein is a cell cycle-fluctuating regulator of the SIN3-HDAC1 histone deacetylase complex. The Journal of Biological Chemistry. 287: 32346-53. PMID 22865885 DOI: 10.1074/Jbc.M112.382499 |
0.307 |
|
| 2012 |
Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC. Rapid turnover of long noncoding RNAs and the evolution of gene expression. Plos Genetics. 8: e1002841. PMID 22844254 DOI: 10.1371/Journal.Pgen.1002841 |
0.439 |
|
| 2012 |
Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, et al. The bonobo genome compared with the chimpanzee and human genomes. Nature. 486: 527-31. PMID 22722832 DOI: 10.1038/Nature11128 |
0.399 |
|
| 2012 |
Nellåker C, Keane TM, Yalcin B, Wong K, Agam A, Belgard TG, Flint J, Adams DJ, Frankel WN, Ponting CP. The genomic landscape shaped by selection on transposable elements across 18 mouse strains. Genome Biology. 13: R45. PMID 22703977 DOI: 10.1186/Gb-2012-13-6-R45 |
0.803 |
|
| 2012 |
Sanchez-Pulido L, Kong L, Ponting CP. A common ancestry for BAP1 and Uch37 regulators. Bioinformatics (Oxford, England). 28: 1953-6. PMID 22645167 DOI: 10.1093/Bioinformatics/Bts319 |
0.374 |
|
| 2012 |
Kowalczyk MS, Hughes JR, Babbs C, Sanchez-Pulido L, Szumska D, Sharpe JA, Sloane-Stanley JA, Morriss-Kay GM, Smoot LB, Roberts AE, Watkins H, Bhattacharya S, Gibbons RJ, Ponting CP, Wood WG, et al. Nprl3 is required for normal development of the cardiovascular system. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 404-15. PMID 22538705 DOI: 10.1007/S00335-012-9398-Y |
0.398 |
|
| 2012 |
Danecek P, Nellåker C, McIntyre RE, Buendia-Buendia JE, Bumpstead S, Ponting CP, Flint J, Durbin R, Keane TM, Adams DJ. High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biology. 13: 26. PMID 22524474 DOI: 10.1186/Gb-2012-13-4-R26 |
0.4 |
|
| 2012 |
Young RS, Marques AC, Tibbit C, Haerty W, Bassett AR, Liu JL, Ponting CP. Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome. Genome Biology and Evolution. 4: 427-42. PMID 22403033 DOI: 10.1093/Gbe/Evs020 |
0.463 |
|
| 2012 |
Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, ... ... Ponting CP, et al. Insights into hominid evolution from the gorilla genome sequence. Nature. 483: 169-75. PMID 22398555 DOI: 10.1038/Nature10842 |
0.455 |
|
| 2012 |
Parkinson NJ, Maslau S, Ferneyhough B, Zhang G, Gregory L, Buck D, Ragoussis J, Ponting CP, Fischer MD. Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA. Genome Research. 22: 125-33. PMID 22090378 DOI: 10.1101/Gr.124016.111 |
0.389 |
|
| 2012 |
Axelsson E, Webster MT, Ratnakumar A, Ponting CP, Lindblad-Toh K. Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome. Genome Research. 22: 51-63. PMID 22006216 DOI: 10.1101/Gr.124123.111 |
0.437 |
|
| 2011 |
Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, Nellåker C, Whitley H, Cleak J, ... ... Ponting CP, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 477: 289-94. PMID 21921910 DOI: 10.1038/Nature10413 |
0.809 |
|
| 2011 |
Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, ... ... Ponting CP, et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 477: 587-91. PMID 21881562 DOI: 10.1038/Nature10390 |
0.746 |
|
| 2011 |
Ponting CP, Hardison RC. What fraction of the human genome is functional? Genome Research. 21: 1769-76. PMID 21875934 DOI: 10.1101/Gr.116814.110 |
0.414 |
|
| 2011 |
Belgard TG, Marques AC, Oliver PL, Abaan HO, Sirey TM, Hoerder-Suabedissen A, GarcÃa-Moreno F, Molnár Z, Margulies EH, Ponting CP. A transcriptomic atlas of mouse neocortical layers. Neuron. 71: 605-16. PMID 21867878 DOI: 10.1016/J.Neuron.2011.06.039 |
0.767 |
|
| 2011 |
Wong ES, Papenfuss AT, Heger A, Hsu AL, Ponting CP, Miller RD, Fenelon JC, Renfree MB, Gibbs RA, Belov K. Transcriptomic analysis supports similar functional roles for the two thymuses of the tammar wallaby. Bmc Genomics. 12: 420. PMID 21854594 DOI: 10.1186/1471-2164-12-420 |
0.348 |
|
| 2011 |
Sanchez-Pulido L, Ponting CP. Structure and evolutionary history of DISC1. Human Molecular Genetics. 20: R175-81. PMID 21852244 DOI: 10.1093/Hmg/Ddr374 |
0.419 |
|
| 2011 |
Fujita MK, Edwards SV, Ponting CP. The Anolis lizard genome: an amniote genome without isochores. Genome Biology and Evolution. 3: 974-84. PMID 21795750 DOI: 10.1093/Gbe/Evr072 |
0.746 |
|
| 2011 |
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, et al. The reality of pervasive transcription. Plos Biology. 9: e1000625; discussion. PMID 21765801 DOI: 10.1371/Journal.Pbio.1000625 |
0.368 |
|
| 2011 |
Ponting CP, Nellåker C, Meader S. Rapid turnover of functional sequence in human and other genomes. Annual Review of Genomics and Human Genetics. 12: 275-99. PMID 21721940 DOI: 10.1146/Annurev-Genom-090810-183115 |
0.415 |
|
| 2011 |
Sanchez-Pulido L, Ponting CP. Cdc45: the missing RecJ ortholog in eukaryotes? Bioinformatics (Oxford, England). 27: 1885-8. PMID 21653514 DOI: 10.1093/Bioinformatics/Btr332 |
0.354 |
|
| 2011 |
Mills RE, Pittard WS, Mullaney JM, Farooq U, Creasy TH, Mahurkar AA, Kemeza DM, Strassler DS, Ponting CP, Webber C, Devine SE. Natural genetic variation caused by small insertions and deletions in the human genome. Genome Research. 21: 830-9. PMID 21460062 DOI: 10.1101/Gr.115907.110 |
0.376 |
|
| 2011 |
Ponting CP. What are the genomic drivers of the rapid evolution of PRDM9? Trends in Genetics : Tig. 27: 165-71. PMID 21388701 DOI: 10.1016/J.Tig.2011.02.001 |
0.424 |
|
| 2011 |
Blair HJ, Tompson S, Liu YN, Campbell J, MacArthur K, Ponting CP, Ruiz-Perez VL, Goodship JA. Evc2 is a positive modulator of Hedgehog signalling that interacts with Evc at the cilia membrane and is also found in the nucleus. Bmc Biology. 9: 14. PMID 21356043 DOI: 10.1186/1741-7007-9-14 |
0.322 |
|
| 2011 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Ponting CP, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687 |
0.413 |
|
| 2011 |
Shaikh TH, Haldeman-Englert C, Geiger EA, Ponting CP, Webber C. Genes and biological processes commonly disrupted in rare and heterogeneous developmental delay syndromes. Human Molecular Genetics. 20: 880-93. PMID 21147756 DOI: 10.1093/Hmg/Ddq527 |
0.363 |
|
| 2011 |
Goodstadt L, Ponting CP. Is the control of recombination conserved among diverse eukaryotes? Heredity. 106: 710-1. PMID 20606688 DOI: 10.1038/Hdy.2010.88 |
0.363 |
|
| 2010 |
Duro E, Lundin C, Ask K, Sanchez-Pulido L, MacArtney TJ, Toth R, Ponting CP, Groth A, Helleday T, Rouse J. Identification of the MMS22L-TONSL complex that promotes homologous recombination. Molecular Cell. 40: 632-44. PMID 21055984 DOI: 10.1016/J.Molcel.2010.10.023 |
0.3 |
|
| 2010 |
Ohta S, Bukowski-Wills JC, Sanchez-Pulido L, Alves Fde L, Wood L, Chen ZA, Platani M, Fischer L, Hudson DF, Ponting CP, Fukagawa T, Earnshaw WC, Rappsilber J. The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics. Cell. 142: 810-21. PMID 20813266 DOI: 10.1016/J.Cell.2010.07.047 |
0.301 |
|
| 2010 |
Ponting CP, Belgard TG. Transcribed dark matter: meaning or myth? Human Molecular Genetics. 19: R162-8. PMID 20798109 DOI: 10.1093/Hmg/Ddq362 |
0.802 |
|
| 2010 |
Ramagopalan SV, Heger A, Berlanga AJ, Maugeri NJ, Lincoln MR, Burrell A, Handunnetthi L, Handel AE, Disanto G, Orton SM, Watson CT, Morahan JM, Giovannoni G, Ponting CP, Ebers GC, et al. A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution. Genome Research. 20: 1352-60. PMID 20736230 DOI: 10.1101/Gr.107920.110 |
0.346 |
|
| 2010 |
Meader S, Ponting CP, Lunter G. Massive turnover of functional sequence in human and other mammalian genomes. Genome Research. 20: 1335-43. PMID 20693480 DOI: 10.1101/Gr.108795.110 |
0.441 |
|
| 2010 |
Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP. Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes. Genome Biology. 11: R72. PMID 20624288 DOI: 10.1186/Gb-2010-11-7-R72 |
0.448 |
|
| 2010 |
Sanchez-Pulido L, Diffley JF, Ponting CP. Homology explains the functional similarities of Treslin/Ticrr and Sld3. Current Biology : Cb. 20: R509-10. PMID 20620901 DOI: 10.1016/J.Cub.2010.05.021 |
0.326 |
|
| 2010 |
Nam K, Mugal C, Nabholz B, Schielzeth H, Wolf JB, Backström N, Künstner A, Balakrishnan CN, Heger A, Ponting CP, Clayton DF, Ellegren H. Molecular evolution of genes in avian genomes. Genome Biology. 11: R68. PMID 20573239 DOI: 10.1186/Gb-2010-11-6-R68 |
0.479 |
|
| 2010 |
Pinto D, Pagnamenta AT, Klei L, Anney R, Merico D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS, Almeida J, Bacchelli E, Bader GD, Bailey AJ, Baird G, ... ... Ponting CP, et al. Functional impact of global rare copy number variation in autism spectrum disorders. Nature. 466: 368-72. PMID 20531469 DOI: 10.1038/Nature09146 |
0.484 |
|
| 2010 |
Hehir-Kwa JY, Wieskamp N, Webber C, Pfundt R, Brunner HG, Gilissen C, de Vries BB, Ponting CP, Veltman JA. Accurate distinction of pathogenic from benign CNVs in mental retardation. Plos Computational Biology. 6: e1000752. PMID 20421931 DOI: 10.1371/Journal.Pcbi.1000752 |
0.386 |
|
| 2010 |
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/Nature08819 |
0.613 |
|
| 2010 |
Murton BL, Chin WL, Ponting CP, Itzhaki LS. Characterising the binding specificities of the subunits associated with the KMT2/Set1 histone lysine methyltransferase. Journal of Molecular Biology. 398: 481-8. PMID 20347846 DOI: 10.1016/J.Jmb.2010.03.036 |
0.34 |
|
| 2010 |
Meader S, Hillier LW, Locke D, Ponting CP, Lunter G. Genome assembly quality: assessment and improvement using the neutral indel model. Genome Research. 20: 675-84. PMID 20305016 DOI: 10.1101/Gr.096966.109 |
0.388 |
|
| 2010 |
Kong L, Lovell PV, Heger A, Mello CV, Ponting CP. Accelerated evolution of PAK3- and PIM1-like kinase gene families in the zebra finch, Taeniopygia guttata. Molecular Biology and Evolution. 27: 1923-34. PMID 20237222 DOI: 10.1093/Molbev/Msq080 |
0.458 |
|
| 2010 |
Bayne EH, White SA, Kagansky A, Bijos DA, Sanchez-Pulido L, Hoe KL, Kim DU, Park HO, Ponting CP, Rappsilber J, Allshire RC. Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity. Cell. 140: 666-77. PMID 20211136 DOI: 10.1016/J.Cell.2010.01.038 |
0.318 |
|
| 2010 |
Noh HJ, Marshall CR, Pinto D, Scherer SW, Ponting CP, Webber C. Candidate genes and biological processes in de novo CNVs from autistic individuals Genome Biology. 11: O9. DOI: 10.1186/Gb-2010-11-S1-O9 |
0.339 |
|
| 2010 |
Ponting CP, Meader SJ, Lunter G. Most of the 6.5% - 10% of human DNA bases that are functional now will soon be turned over Genome Biology. 11. DOI: 10.1186/Gb-2010-11-S1-I10 |
0.455 |
|
| 2009 |
Oliver PL, Goodstadt L, Bayes JJ, Birtle Z, Roach KC, Phadnis N, Beatson SA, Lunter G, Malik HS, Ponting CP. Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa. Plos Genetics. 5: e1000753. PMID 19997497 DOI: 10.1371/Journal.Pgen.1000753 |
0.41 |
|
| 2009 |
Marques AC, Ponting CP. Catalogues of mammalian long noncoding RNAs: Modest conservation and incompleteness Genome Biology. 10. PMID 19895688 DOI: 10.1186/Gb-2009-10-11-R124 |
0.411 |
|
| 2009 |
Ponjavic J, Oliver PL, Lunter G, Ponting CP. Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. Plos Genetics. 5: e1000617. PMID 19696892 DOI: 10.1371/Journal.Pgen.1000617 |
0.399 |
|
| 2009 |
Ponting CP, Goodstadt L. Separating derived from ancestral features of mouse and human genomes Biochemical Society Transactions. 37: 734-739. PMID 19614585 DOI: 10.1042/Bst0370734 |
0.474 |
|
| 2009 |
Webber C, Hehir-Kwa JY, Nguyen DQ, de Vries BB, Veltman JA, Ponting CP. Forging links between human mental retardation-associated CNVs and mouse gene knockout models. Plos Genetics. 5: e1000531. PMID 19557186 DOI: 10.1371/Journal.Pgen.1000531 |
0.34 |
|
| 2009 |
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, ... ... Ponting CP, et al. Lineage-specific biology revealed by a finished genome assembly of the mouse. Plos Biology. 7: e1000112. PMID 19468303 DOI: 10.1371/Journal.Pbio.1000112 |
0.484 |
|
| 2009 |
Heger A, Ponting CP, Holmes I. Accurate estimation of gene evolutionary rates using XRATE, with an application to transmembrane proteins. Molecular Biology and Evolution. 26: 1715-21. PMID 19380462 DOI: 10.1093/Molbev/Msp080 |
0.343 |
|
| 2009 |
Ponting CP, Oliver PL, Reik W. Evolution and functions of long noncoding RNAs. Cell. 136: 629-41. PMID 19239885 DOI: 10.1016/J.Cell.2009.02.006 |
0.354 |
|
| 2008 |
Abd El-Aziz MM, Barragan I, O'Driscoll CA, Goodstadt L, Prigmore E, Borrego S, Mena M, Pieras JI, El-Ashry MF, Safieh LA, Shah A, Cheetham ME, Carter NP, Chakarova C, Ponting CP, et al. EYS, encoding an ortholog of Drosophila spacemaker, is mutated in autosomal recessive retinitis pigmentosa. Nature Genetics. 40: 1285-7. PMID 18836446 DOI: 10.1038/Ng.241 |
0.333 |
|
| 2008 |
Nguyen DQ, Webber C, Hehir-Kwa J, Pfundt R, Veltman J, Ponting CP. Reduced purifying selection prevails over positive selection in human copy number variant evolution. Genome Research. 18: 1711-23. PMID 18687881 DOI: 10.1101/Gr.077289.108 |
0.387 |
|
| 2008 |
Ponting CP. The functional repertoires of metazoan genomes Nature Reviews Genetics. 9: 689-698. PMID 18663365 DOI: 10.1038/Nrg2413 |
0.441 |
|
| 2008 |
Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, et al. Genome analysis of the platypus reveals unique signatures of evolution. Nature. 453: 175-83. PMID 18464734 DOI: 10.1038/Nature06936 |
0.469 |
|
| 2008 |
Whittington CM, Papenfuss AT, Bansal P, Torres AM, Wong ES, Deakin JE, Graves T, Alsop A, Schatzkamer K, Kremitzki C, Ponting CP, Temple-Smith P, Warren WC, Kuchel PW, Belov K. Defensins and the convergent evolution of platypus and reptile venom genes. Genome Research. 18: 986-94. PMID 18463304 DOI: 10.1101/Gr.7149808 |
0.406 |
|
| 2008 |
Laukaitis CM, Heger A, Blakley TD, Munclinger P, Ponting CP, Karn RC. Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals Bmc Evolutionary Biology. 8. PMID 18269759 DOI: 10.1186/1471-2148-8-46 |
0.456 |
|
| 2008 |
Bakrania P, Efthymiou M, Klein JC, Salt A, Bunyan DJ, Wyatt A, Ponting CP, Martin A, Williams S, Lindley V, Gilmore J, Restori M, Robson AG, Neveu MM, Holder GE, et al. Mutations in BMP4 cause eye, brain, and digit developmental anomalies: overlap between the BMP4 and hedgehog signaling pathways. American Journal of Human Genetics. 82: 304-19. PMID 18252212 DOI: 10.1016/J.Ajhg.2007.09.023 |
0.335 |
|
| 2008 |
Ramm SA, Oliver PL, Ponting CP, Stockley P, Emes RD. Sexual selection and the adaptive evolution of mammalian ejaculate proteins. Molecular Biology and Evolution. 25: 207-19. PMID 18032407 DOI: 10.1093/Molbev/Msm242 |
0.335 |
|
| 2008 |
Heger A, Ponting CP. OPTIC: Orthologous and paralogous transcripts in clades Nucleic Acids Research. 36: D267-D270. PMID 17933761 DOI: 10.1093/Nar/Gkm852 |
0.41 |
|
| 2007 |
Heger A, Ponting CP. Variable strength of translational selection among 12 Drosophila species Genetics. 177: 1337-1348. PMID 18039870 DOI: 10.1534/Genetics.107.070466 |
0.379 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Ponting CP, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.456 |
|
| 2007 |
Heger A, Ponting CP. Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes Genome Research. 17: 1837-1849. PMID 17989258 DOI: 10.1101/Gr.6249707 |
0.444 |
|
| 2007 |
Ponjavic J, Ponting CP. The long and the short of RNA maps Bioessays. 29: 1077-1080. PMID 17935150 DOI: 10.1002/Bies.20669 |
0.362 |
|
| 2007 |
Chakarova CF, Papaioannou MG, Khanna H, Lopez I, Waseem N, Shah A, Theis T, Friedman J, Maubaret C, Bujakowska K, Veraitch B, Abd El-Aziz MM, Prescott de Q, Parapuram SK, Bickmore WA, ... ... Ponting CP, et al. Mutations in TOPORS cause autosomal dominant retinitis pigmentosa with perivascular retinal pigment epithelium atrophy. American Journal of Human Genetics. 81: 1098-103. PMID 17924349 DOI: 10.1086/521953 |
0.335 |
|
| 2007 |
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, ... ... Ponting CP, et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447: 167-77. PMID 17495919 DOI: 10.1038/Nature05805 |
0.461 |
|
| 2007 |
Goodstadt L, Heger A, Webber C, Ponting CP. An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes. Genome Research. 17: 969-81. PMID 17495010 DOI: 10.1101/Gr.6093907 |
0.382 |
|
| 2007 |
Ponjavic J, Ponting CP, Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs Genome Research. 17: 556-565. PMID 17387145 DOI: 10.1101/Gr.6036807 |
0.396 |
|
| 2006 |
Birtle Z, Ponting CP. Meisetz and the birth of the KRAB motif Bioinformatics. 22: 2841-2845. PMID 17032681 DOI: 10.1093/Bioinformatics/Btl498 |
0.433 |
|
| 2006 |
Goodstadt L, Ponting CP. Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human Plos Computational Biology. 2: 1134-1150. PMID 17009864 DOI: 10.1371/Journal.Pcbi.0020133 |
0.448 |
|
| 2006 |
Ponting CP, Lunter G. Signatures of adaptive evolution within human non-coding sequence Human Molecular Genetics. 15: R170-R175. PMID 16987880 DOI: 10.1093/Hmg/Ddl182 |
0.419 |
|
| 2006 |
Ponting CP, Lunter G. Evolutionary biology: Human brain gene wins genome race Nature. 443: 149-150. PMID 16915234 DOI: 10.1038/Nature05154 |
0.395 |
|
| 2006 |
Nguyen DQ, Webber C, Ponting CP. Bias of selection on human copy-number variants. Plos Genetics. 2: e20. PMID 16482228 DOI: 10.1371/Journal.Pgen.0020020 |
0.454 |
|
| 2006 |
Ponting CP. A novel domain suggests a ciliary function for ASPM, a brain size determining gene Bioinformatics. 22: 1031-1035. PMID 16443634 DOI: 10.1093/Bioinformatics/Btl022 |
0.386 |
|
| 2006 |
Lunter G, Ponting CP, Hein J. Genome-wide identification of human functional DNA using a neutral indel model. Plos Computational Biology. 2: e5. PMID 16410828 DOI: 10.1371/journal.pcbi.0020005 |
0.349 |
|
| 2006 |
Lunter G, Ponting CP, Hein J. Genome-wide identification of human functional DNA using a neutral indel model Plos Computational Biology. 2. DOI: 10.1371/Journal.Pcbi.0020005 |
0.456 |
|
| 2005 |
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, ... Ponting CP, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 438: 803-19. PMID 16341006 DOI: 10.1038/Nature04338 |
0.43 |
|
| 2005 |
Webber C, Ponting CP. Hotspots of mutation and breakage in dog and human chromosomes. Genome Research. 15: 1787-97. PMID 16339377 DOI: 10.1101/Gr.3896805 |
0.364 |
|
| 2005 |
Winter EE, Ponting CP. Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events Bmc Evolutionary Biology. 5. PMID 16221301 DOI: 10.1186/1471-2148-5-54 |
0.455 |
|
| 2005 |
Birtle Z, Goodstadt L, Ponting C. Duplication and positive selection among hominin-specific PRAME genes. Bmc Genomics. 6: 120. PMID 16159394 DOI: 10.1186/1471-2164-6-120 |
0.432 |
|
| 2005 |
Coward K, Ponting CP, Chang HY, Hibbitt O, Savolainen P, Jones KT, Parrington J. Phospholipase Czeta, the trigger of egg activation in mammals, is present in a non-mammalian species. Reproduction (Cambridge, England). 130: 157-63. PMID 16049153 DOI: 10.1530/Rep.1.00707 |
0.33 |
|
| 2005 |
Laukaitis CM, Dlouhy SR, Emes RD, Ponting CP, Karn RC. Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus. Bmc Evolutionary Biology. 5: 40. PMID 16018816 DOI: 10.1186/1471-2148-5-40 |
0.351 |
|
| 2005 |
Ponting C, Jackson AP. Evolution of primary microcephaly genes and the enlargement of primate brains Current Opinion in Genetics and Development. 15: 241-248. PMID 15917198 DOI: 10.1016/J.Gde.2005.04.009 |
0.336 |
|
| 2005 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, ... ... Ponting CP, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/Nar/Gki106 |
0.514 |
|
| 2004 |
Ponting C, Barker D. Finishing the euchromatic sequence of the human genome Nature. 431. PMID 15496913 DOI: 10.1038/Nature03001 |
0.393 |
|
| 2004 |
Beatson S, Ponting CP. GIFT domains: Linking eukaryotic intraflagellar transport and glycosylation to bacterial gliding Trends in Biochemical Sciences. 29: 396-399. PMID 15288869 DOI: 10.1016/J.Tibs.2004.06.002 |
0.322 |
|
| 2004 |
Emes RD, Riley MC, Laukaitis CM, Goodstadt L, Karn RC, Ponting CP. Comparative evolutionary genomics of androgen-binding protein genes. Genome Research. 14: 1516-29. PMID 15256509 DOI: 10.1101/Gr.2540304 |
0.461 |
|
| 2004 |
Huang H, Winter EE, Wang H, Weinstock KG, Xing H, Goodstadt L, Stenson PD, Cooper DN, Smith D, Albà MM, Ponting CP, Fechtel K. Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes Genome Biology. 5: R47. PMID 15239832 DOI: 10.1186/Gb-2004-5-7-R47 |
0.359 |
|
| 2004 |
Webber C, Ponting CP. Genes and homology. Current Biology : Cb. 14: R332-3. PMID 15120081 DOI: 10.1016/J.Cub.2004.04.016 |
0.443 |
|
| 2004 |
Emes RD, Beatson SA, Ponting CP, Goodstadt L. Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents. Genome Research. 14: 591-602. PMID 15060000 DOI: 10.1101/Gr.1940604 |
0.323 |
|
| 2004 |
Taylor MS, Ponting CP, Copley RR. Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes. Genome Research. 14: 555-66. PMID 15059996 DOI: 10.1101/Gr.1977804 |
0.43 |
|
| 2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Ponting CP, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.573 |
|
| 2004 |
Zimdahl H, Nyakatura G, Brandt P, Schulz H, Hummel O, Fartmann B, Brett D, Droege M, Monti J, Lee YA, Sun Y, Zhao S, Winter EE, Ponting CP, Chen Y, et al. A SNP map of the rat genome generated from cDNA sequences. Science (New York, N.Y.). 303: 807. PMID 14764869 DOI: 10.1126/Science.1092427 |
0.366 |
|
| 2004 |
Winter EE, Goodstadt L, Ponting CP. Elevated rates of protein secretion, evolution, and disease among tissue-specific genes Genome Research. 14: 54-61. PMID 14707169 DOI: 10.1101/Gr.1924004 |
0.35 |
|
| 2004 |
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P. SMART 4.0: towards genomic data integration. Nucleic Acids Research. 32: D142-4. PMID 14681379 DOI: 10.1093/Nar/Gkh088 |
0.576 |
|
| 2004 |
Smith L, Van Hateren N, Willan J, Romero R, Blanco G, Siggers P, Walsh J, Banerjee R, Denny P, Ponting C, Greenfield A. Candidate testis-determining gene, Maestro (Mro), encodes a novel HEAT repeat protein. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 227: 600-7. PMID 12889070 DOI: 10.1002/Dvdy.10342 |
0.372 |
|
| 2003 |
Copley RR, Goodstadt L, Ponting C. Eukaryotic domain evolution inferred from genome comparisons. Current Opinion in Genetics & Development. 13: 623-8. PMID 14638325 DOI: 10.1016/J.Gde.2003.10.004 |
0.427 |
|
| 2003 |
Allen M, Heinzmann A, Noguchi E, Abecasis G, Broxholme J, Ponting CP, Bhattacharyya S, Tinsley J, Zhang Y, Holt R, Yvonne Jones E, Lench N, Carey A, Jones H, Dickens NJ, et al. Positional cloning of a novel gene influencing asthma from Chromosome 2q14 Nature Genetics. 35: 258-263. PMID 14566338 DOI: 10.1038/Ng1256 |
0.305 |
|
| 2003 |
Dickens NJ, Ponting CP. THoR: a tool for domain discovery and curation of multiple alignments Genome Biology. 4: R52. PMID 12914660 DOI: 10.1186/Gb-2003-4-8-R52 |
0.383 |
|
| 2003 |
Hartmann-Petersen R, Semple CAM, Ponting CP, Hendil KB, Gordon C. UBA domain containing proteins in fission yeast International Journal of Biochemistry and Cell Biology. 35: 629-636. PMID 12672455 DOI: 10.1016/S1357-2725(02)00393-X |
0.377 |
|
| 2003 |
Emes RD, Goodstadt L, Winter EE, Ponting CP. Comparison of the genomes of human and mouse lays the foundation of genome zoology. Human Molecular Genetics. 12: 701-9. PMID 12651866 DOI: 10.1093/Hmg/Ddg078 |
0.429 |
|
| 2003 |
Maurer-Stroh S, Dickens NJ, Hughes-Davies L, Kouzarides T, Eisenhaber F, Ponting CP. The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains. Trends in Biochemical Sciences. 28: 69-74. PMID 12575993 DOI: 10.1016/S0968-0004(03)00004-5 |
0.332 |
|
| 2003 |
Guigo R, Dermitzakis ET, Agarwal P, Ponting CP, Parra G, Reymond A, Abril JF, Keibler E, Lyle R, Ucla C, Antonarakis SE, Brent MR. Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes. Proceedings of the National Academy of Sciences of the United States of America. 100: 1140-5. PMID 12552088 DOI: 10.1073/Pnas.0337561100 |
0.475 |
|
| 2003 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, ... ... Ponting CP, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046 |
0.496 |
|
| 2003 |
Ponting CP. A coming of age for bioinformatics: Bioinformatics: Sequence and Genome Analysis Journal of Cell Science. 116: 6-7. DOI: 10.1242/Jcs.00197 |
0.355 |
|
| 2002 |
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Ponting CP, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262 |
0.578 |
|
| 2002 |
Copley RR, Ponting CP, Schultz J, Bork P. Sequence analysis of multidomain proteins: past perspectives and future directions. Advances in Protein Chemistry. 61: 75-98. PMID 12461821 DOI: 10.1016/S0065-3233(02)61002-2 |
0.51 |
|
| 2002 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, ... ... Ponting CP, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031 DOI: 10.1093/Bib/3.3.225 |
0.558 |
|
| 2002 |
Vargas JD, Culetto E, Ponting CP, Miguel-Aliaga I, Davies KE, Sattelle DB. Cloning and developmental expression analysis of ltd-1, the Caenorhabditis elegans homologue of the mouse kyphoscoliosis (ky) gene. Mechanisms of Development. 117: 289-92. PMID 12204272 DOI: 10.1016/S0925-4773(02)00182-X |
0.372 |
|
| 2002 |
Ponting CP. Novel domains and orthologues of eukaryotic transcription elongation factors Nucleic Acids Research. 30: 3643-3652. PMID 12202748 DOI: 10.1093/Nar/Gkf498 |
0.402 |
|
| 2002 |
Mott R, Schultz J, Bork P, Ponting CP. Predicting protein cellular localization using a domain projection method. Genome Research. 12: 1168-74. PMID 12176924 DOI: 10.1101/Gr.96802 |
0.495 |
|
| 2002 |
Winter E, Ponting CP. TRAM, LAG1 and CLN8: Members of a novel family of lipid-sensing domains? Trends in Biochemical Sciences. 27: 381-383. PMID 12151215 DOI: 10.1016/S0968-0004(02)02154-0 |
0.322 |
|
| 2002 |
Ponting CP, Russell RR. The natural history of protein domains Annual Review of Biophysics and Biomolecular Structure. 31: 45-71. PMID 11988462 DOI: 10.1146/Annurev.Biophys.31.082901.134314 |
0.405 |
|
| 2002 |
Ponting CP, Hutton M, Nyborg A, Baker M, Jansen K, Golde TE. Identification of a novel family of presenilin homologues. Human Molecular Genetics. 11: 1037-44. PMID 11978763 DOI: 10.1093/Hmg/11.9.1037 |
0.381 |
|
| 2002 |
Dickens NJ, Beatson S, Ponting CP. Cadherin-like domains in α-dystroglycan, α/ε-sarcoglycan and yeast and bacterial proteins Current Biology. 12: R197-R199. PMID 11909544 DOI: 10.1016/S0960-9822(02)00748-0 |
0.323 |
|
| 2002 |
Ponting CP, Ito T, Moscat J, Diaz-Meco MT, Inagaki F, Sumimoto H. OPR, PC and AID: All in the PB1 family Trends in Biochemical Sciences. 27: 10. PMID 11796218 DOI: 10.1016/S0968-0004(01)02006-0 |
0.339 |
|
| 2002 |
Doerks T, Copley RR, Schultz J, Ponting CP, Bork P. Systematic identification of novel protein domain families associated with nuclear functions. Genome Research. 12: 47-56. PMID 11779830 DOI: 10.1101/Gr.203201 |
0.514 |
|
| 2002 |
Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P. Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Research. 30: 242-4. PMID 11752305 DOI: 10.1093/Nar/30.1.242 |
0.521 |
|
| 2002 |
Goodstadt L, Ponting CP. Sequence variation and disease in the wake of the draft human genome. Human Molecular Genetics. 10: 2209-14. PMID 11673403 DOI: 10.1093/Hmg/10.20.2209 |
0.439 |
|
| 2002 |
Ponting CP, Dickens NJ. Genome cartography through domain annotation. Genome Biology. 2: Comment 2006. PMID 11521679 DOI: 10.1186/Gb-2001-2-7-Comment2006 |
0.451 |
|
| 2001 |
Emes RD, Ponting CP. A new sequence motif linking lissencephaly, Treacher Collins and oral-facial-digital type 1 syndromes, microtubule dynamics and cell migration. Human Molecular Genetics. 10: 2813-20. PMID 11734546 DOI: 10.1093/Hmg/10.24.2813 |
0.368 |
|
| 2001 |
Ponting CP, Mott R, Bork P, Copley RR. Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution. Genome Research. 11: 1996-2008. PMID 11731489 DOI: 10.1101/Gr.198701 |
0.587 |
|
| 2001 |
Brockington M, Blake DJ, Prandini P, Brown SC, Torelli S, Benson MA, Ponting CP, Estournet B, Romero NB, Mercuri E, Voit T, Sewry CA, Guicheney P, Muntoni F. Mutations in the fukutin-related protein gene (FKRP) cause a form of congenital muscular dystrophy with secondary laminin deficiency and abnormal glycosylation of α-dystroglycan American Journal of Human Genetics. 69: 1198-1209. PMID 11592034 DOI: 10.1086/324412 |
0.339 |
|
| 2001 |
Lupas AN, Ponting CP, Russell RB. On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? Journal of Structural Biology. 134: 191-203. PMID 11551179 DOI: 10.1006/Jsbi.2001.4393 |
0.378 |
|
| 2001 |
Andrade MA, Perez-Iratxeta C, Ponting CP. Protein repeats: structures, functions, and evolution. Journal of Structural Biology. 134: 117-31. PMID 11551174 DOI: 10.1006/Jsbi.2001.4392 |
0.374 |
|
| 2001 |
Ponting CP. Issues in predicting protein function from sequence. Briefings in Bioinformatics. 2: 19-29. PMID 11465059 DOI: 10.1093/Bib/2.1.19 |
0.391 |
|
| 2001 |
Ponting CP. Plagiarized bacterial genes in the human book of life. Trends in Genetics : Tig. 17: 235-7. PMID 11335018 DOI: 10.1016/S0168-9525(01)02282-X |
0.414 |
|
| 2001 |
Copley RR, Russell RB, Ponting CP. Sialidase-like Asp-boxes: sequence-similar structures within different protein folds. Protein Science : a Publication of the Protein Society. 10: 285-92. PMID 11266614 DOI: 10.1110/Ps.31901 |
0.406 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Ponting CP, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062 |
0.539 |
|
| 2001 |
Clissold PM, Ponting CP. JmjC: cupin metalloenzyme-like domains in jumonji, hairless and phospholipase A2beta. Trends in Biochemical Sciences. 26: 7-9. PMID 11165500 DOI: 10.1016/S0968-0004(00)01700-X |
0.399 |
|
| 2001 |
Blanco G, Coulton GR, Biggin A, Grainge C, Moss J, Barrett M, Berquin A, Maréchal G, Skynner M, van Mier P, Nikitopoulou A, Kraus M, Ponting CP, Mason RM, Brown SD. The kyphoscoliosis (ky) mouse is deficient in hypertrophic responses and is caused by a mutation in a novel muscle-specific protein. Human Molecular Genetics. 10: 9-16. PMID 11136708 DOI: 10.1093/Hmg/10.1.9 |
0.304 |
|
| 2001 |
Ponting CP, Birney E. Identification of domains from protein sequences. Methods in Molecular Biology (Clifton, N.J.). 143: 53-69. PMID 11084902 DOI: 10.1385/1-59259-368-2:53 |
0.386 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Ponting CP, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627 |
0.538 |
|
| 2000 |
Ponting CP, Russell RB. Identification of distant homologues of fibroblast growth factors suggests a common ancestor for all beta-trefoil proteins. Journal of Molecular Biology. 302: 1041-7. PMID 11183773 DOI: 10.1006/Jmbi.2000.4087 |
0.339 |
|
| 2000 |
Newey SE, Benson MA, Ponting CP, Davies KE, Blake DJ. Alternative splicing of dystrobrevin regulates the stoichiometry of syntrophin binding to the dystrophin protein complex. Current Biology : Cb. 10: 1295-8. PMID 11069112 DOI: 10.1016/S0960-9822(00)00760-0 |
0.328 |
|
| 2000 |
Schultz J, Doerks T, Ponting CP, Copley RR, Bork P. More than 1,000 putative new human signalling proteins revealed by EST data mining. Nature Genetics. 25: 201-4. PMID 10835637 DOI: 10.1038/76069 |
0.576 |
|
| 2000 |
Ponting CP, Schultz J, Copley RR, Andrade MA, Bork P. Evolution of domain families. Advances in Protein Chemistry. 54: 185-244. PMID 10829229 DOI: 10.1016/S0065-3233(00)54007-8 |
0.455 |
|
| 2000 |
Andrade MA, Ponting CP, Gibson TJ, Bork P. Homology-based method for identification of protein repeats using statistical significance estimates. Journal of Molecular Biology. 298: 521-37. PMID 10772867 DOI: 10.1006/Jmbi.2000.3684 |
0.486 |
|
| 2000 |
Schäffer AA, Wolf YI, Ponting CP, Koonin EV, Aravind L, Altschul SF. IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics (Oxford, England). 15: 1000-11. PMID 10745990 DOI: 10.1093/Bioinformatics/15.12.1000 |
0.333 |
|
| 2000 |
Hodgkin MN, Masson MR, Powner D, Saqib KM, Ponting CP, Wakelam MJO. Phospholipase D regulation and localisation is dependent upon a phosphatidylinositol 4,5-bisphosphate-specific PH domain Current Biology. 10: 43-46. PMID 10660303 DOI: 10.1016/S0960-9822(99)00264-X |
0.323 |
|
| 2000 |
Ponting CP. Raf-like Ras/Rap-binding domains in RGS12- and still-life-like signalling proteins. Journal of Molecular Medicine (Berlin, Germany). 77: 695-8. PMID 10606204 DOI: 10.1007/S001099900054 |
0.303 |
|
| 2000 |
Schultz J, Copley RR, Doerks T, Ponting CP, Bork P. SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Research. 28: 231-4. PMID 10592234 DOI: 10.1093/Nar/28.1.231 |
0.504 |
|
| 2000 |
PONTING CP. Proteins of the endoplasmic-reticulum-associated degradation pathway: domain detection and function prediction Biochemical Journal. 351: 527-535. DOI: 10.1042/Bj3510527 |
0.366 |
|
| 1999 |
Copley RR, Ponting CP, Bork P. Phospholipases A2 and Wnts are unlikely to share a common ancestor. Current Biology : Cb. 9: R718-9. PMID 10712041 DOI: 10.1016/S0960-9822(99)80466-7 |
0.385 |
|
| 1999 |
Barnes MR, Russell RB, Copley RR, Ponting CP, Bork P, Cumberledge S, Reichsman F, Moore HM. A lipid-binding domain in Wnt: a case of mistaken identity? Current Biology : Cb. 9: R717-9. PMID 10531014 DOI: 10.1016/S0960-9822(99)80465-5 |
0.497 |
|
| 1999 |
Ponting CP, Pallen MJ. beta-propeller repeats and a PDZ domain in the tricorn protease: predicted self-compartmentalisation and C-terminal polypeptide-binding strategies of substrate selection. Fems Microbiology Letters. 179: 447-51. PMID 10518749 DOI: 10.1111/J.1574-6968.1999.Tb08761.X |
0.319 |
|
| 1999 |
Ponting CP, Hofmann K, Bork P. A latrophilin/CL-1-like GPS domain in polycystin-1. Current Biology : Cb. 9: R585-8. PMID 10469603 DOI: 10.1016/S0960-9822(99)80379-0 |
0.429 |
|
| 1999 |
Mohaghegh P, Rodrigues NR, Owen N, Ponting CP, Le TT, Burghes AH, Davies KE. Analysis of mutations in the tudor domain of the survival motor neuron protein SMN. European Journal of Human Genetics : Ejhg. 7: 519-25. PMID 10439956 DOI: 10.1038/Sj.Ejhg.5200346 |
0.334 |
|
| 1999 |
Aravind L, Ponting CP. The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteins. Fems Microbiology Letters. 176: 111-6. PMID 10418137 DOI: 10.1111/J.1574-6968.1999.Tb13650.X |
0.317 |
|
| 1999 |
Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV. Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. Journal of Molecular Biology. 289: 729-45. PMID 10369758 DOI: 10.1006/Jmbi.1999.2827 |
0.52 |
|
| 1999 |
Copley RR, Schultz J, Ponting CP, Bork P. Protein families in multicellular organisms. Current Opinion in Structural Biology. 9: 408-15. PMID 10361098 DOI: 10.1016/S0959-440X(99)80055-4 |
0.566 |
|
| 1999 |
Ponting CP, Bork P, Schultz J, Aravind L. No Sec7-homology domain in guanine-nucleotide-exchange factors that act on Ras and Rho. Trends in Biochemical Sciences. 24: 177-8. PMID 10322430 DOI: 10.1016/S0968-0004(99)01379-1 |
0.442 |
|
| 1999 |
Ponting CP, Schultz J, Milpetz F, Bork P. SMART: identification and annotation of domains from signalling and extracellular protein sequences. Nucleic Acids Research. 27: 229-32. PMID 9847187 DOI: 10.1093/Nar/27.1.229 |
0.535 |
|
| 1998 |
Talbot K, Miguel-Aliaga I, Mohaghegh P, Ponting CP, Davies KE. Characterization of a gene encoding survival motor neuron (SMN)-related protein, a constituent of the spliceosome complex. Human Molecular Genetics. 7: 2149-56. PMID 9817934 DOI: 10.1093/Hmg/7.13.2149 |
0.373 |
|
| 1998 |
Russell RB, Ponting CP. Protein fold irregularities that hinder sequence analysis. Current Opinion in Structural Biology. 8: 364-71. PMID 9666333 DOI: 10.1016/S0959-440X(98)80071-7 |
0.346 |
|
| 1998 |
Kharrat A, Millevoi S, Baraldi E, Ponting CP, Bork P, Pastore A. Conformational stability studies of the pleckstrin DEP domain: definition of the domain boundaries. Biochimica Et Biophysica Acta. 1385: 157-64. PMID 9630596 DOI: 10.1016/S0167-4838(98)00041-7 |
0.498 |
|
| 1998 |
Aravind L, Ponting CP. Homologues of 26S proteasome subunits are regulators of transcription and translation. Protein Science : a Publication of the Protein Society. 7: 1250-4. PMID 9605331 DOI: 10.1002/Pro.5560070521 |
0.308 |
|
| 1998 |
Schultz J, Milpetz F, Bork P, Ponting CP. SMART, a simple modular architecture research tool: identification of signaling domains. Proceedings of the National Academy of Sciences of the United States of America. 95: 5857-64. PMID 9600884 DOI: 10.1073/Pnas.95.11.5857 |
0.529 |
|
| 1998 |
Aravind L, Ponting CP. The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends in Biochemical Sciences. 22: 458-9. PMID 9433123 DOI: 10.1016/S0968-0004(97)01148-1 |
0.346 |
|
| 1998 |
Pallen MJ, Ponting CP. PDZ domains in bacterial proteins. Molecular Microbiology. 26: 411-3. PMID 9383164 DOI: 10.1046/J.1365-2958.1997.5591911.X |
0.311 |
|
| 1997 |
Ponting CP, Phillips C. Identification of homer as a homologue of the Wiskott-Aldrich syndrome protein suggests a receptor-binding function for WH1 domains Journal of Molecular Medicine. 75: 769-771. PMID 9428607 DOI: 10.1007/S001090050166 |
0.305 |
|
| 1997 |
Bork P, Schultz J, Ponting CP. Cytoplasmic signalling domains: the next generation. Trends in Biochemical Sciences. 22: 296-8. PMID 9270302 DOI: 10.1016/S0968-0004(97)01084-0 |
0.47 |
|
| 1997 |
Ponting CP, Cai YD, Bork P. The breast cancer gene product TSG101: a regulator of ubiquitination? Journal of Molecular Medicine (Berlin, Germany). 75: 467-9. PMID 9253709 |
0.452 |
|
| 1997 |
Ponting CP, Phillips C, Davies KE, Blake DJ. PDZ domains: targeting signalling molecules to sub-membranous sites. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 19: 469-79. PMID 9204764 DOI: 10.1002/Bies.950190606 |
0.333 |
|
| 1997 |
Ponting C, Schultz J, Bork P. SPRY domains in ryanodine receptors (Ca(2+)-release channels). Trends in Biochemical Sciences. 22: 193-4. PMID 9204703 DOI: 10.1016/S0968-0004(97)01049-9 |
0.402 |
|
| 1997 |
Talbot K, Ponting CP, Theodosiou AM, Rodrigues NR, Surtees R, Mountford R, Davies KE. Missense mutation clustering in the survival motor neuron gene: a role for a conserved tyrosine and glycine rich region of the protein in RNA metabolism? Human Molecular Genetics. 6: 497-500. PMID 9147655 DOI: 10.1093/Hmg/6.3.497 |
0.335 |
|
| 1997 |
Ponting CP. Tudor domains in proteins that interact with RNA. Trends in Biochemical Sciences. 22: 51-2. PMID 9048482 DOI: 10.1016/S0968-0004(96)30049-2 |
0.307 |
|
| 1997 |
Ponting CP. Evidence for PDZ domains in bacteria, yeast, and plants. Protein Science : a Publication of the Protein Society. 6: 464-8. PMID 9041651 DOI: 10.1002/Pro.5560060225 |
0.356 |
|
| 1997 |
Ponting CP. P100, a transcriptional coactivator, is a human homologue of staphylococcal nuclease. Protein Science : a Publication of the Protein Society. 6: 459-63. PMID 9041650 DOI: 10.1002/Pro.5560060224 |
0.358 |
|
| 1997 |
Schultz J, Ponting CP, Hofmann K, Bork P. SAM as a protein interaction domain involved in developmental regulation. Protein Science : a Publication of the Protein Society. 6: 249-53. PMID 9007998 DOI: 10.1002/Pro.5560060128 |
0.522 |
|
| 1997 |
Conejero-Lara F, Parrado J, Azuaga AI, Smith RA, Ponting CP, Dobson CM. Thermal stability of the three domains of streptokinase studied by circular dichroism and nuclear magnetic resonance. Protein Science : a Publication of the Protein Society. 5: 2583-91. PMID 8976567 DOI: 10.1002/Pro.5560051221 |
0.305 |
|
| 1997 |
Ponting CP. Novel domains in NADPH oxidase subunits, sorting nexins, and PtdIns 3-kinases: binding partners of SH3 domains? Protein Science : a Publication of the Protein Society. 5: 2353-7. PMID 8931154 DOI: 10.1002/Pro.5560051122 |
0.345 |
|
| 1997 |
Ponting CP, Kerr ID. A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues. Protein Science : a Publication of the Protein Society. 5: 914-22. PMID 8732763 DOI: 10.1002/Pro.5560050513 |
0.361 |
|
| 1996 |
Haynie DT, Ponting CP. The N-terminal domains of tensin and auxilin are phosphatase homologues Protein Science. 5: 2643-2646. PMID 8976573 DOI: 10.1002/Pro.5560051227 |
0.363 |
|
| 1996 |
Ponting CP, Blake DJ, Davies KE, Kendrick-Jones J, Winder SJ. ZZ and TAZ: new putative zinc fingers in dystrophin and other proteins. Trends in Biochemical Sciences. 21: 11-13. PMID 8848831 DOI: 10.1016/S0968-0004(06)80020-4 |
0.361 |
|
| 1996 |
Parrado J, Conejero-Lara F, Smith RA, Marshall JM, Ponting CP, Dobson CM. The domain organization of streptokinase: nuclear magnetic resonance, circular dichroism, and functional characterization of proteolytic fragments. Protein Science : a Publication of the Protein Society. 5: 693-704. PMID 8845759 DOI: 10.1002/Pro.5560050414 |
0.314 |
|
| 1996 |
Ponting CP, Parker PJ. Extending the C2 domain family: C2s in PKCs δ, ε, η, θ, phospholipases, GAPs, and perforin Protein Science. 5: 162-166. PMID 8771209 DOI: 10.1002/Pro.5560050120 |
0.317 |
|
| 1996 |
Ponting CP, Bork P. Pleckstrin's repeat performance: a novel domain in G-protein signaling? Trends in Biochemical Sciences. 21: 245-6. PMID 8755244 DOI: 10.1016/S0968-0004(96)30027-3 |
0.461 |
|
| 1996 |
Doherty AJ, Serpell LC, Ponting CP. The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Research. 24: 2488-97. PMID 8692686 DOI: 10.1093/Nar/24.13.2488 |
0.328 |
|
| 1996 |
Ponting CP. SAM: a novel motif in yeast sterile and Drosophila polyhomeotic proteins. Protein Science : a Publication of the Protein Society. 4: 1928-30. PMID 8528090 DOI: 10.1002/Pro.5560040927 |
0.397 |
|
| 1995 |
Ponting CP, Russell RB. Swaposins: circular permutations within genes encoding saposin homologues. Trends in Biochemical Sciences. 20: 179-80. PMID 7610480 DOI: 10.1016/S0968-0004(00)89003-9 |
0.332 |
|
| 1994 |
Ponting CP. Acid sphingomyelinase possesses a domain homologous to its activator proteins: saposins B and D. Protein Science : a Publication of the Protein Society. 3: 359-61. PMID 8003971 DOI: 10.1002/Pro.5560030219 |
0.358 |
|
| 1992 |
Ponting CP, Marshall JM, Cederholm-Williams SA. Plasminogen Blood Coagulation & Fibrinolysis. 3: 605-614. DOI: 10.1097/00001721-199210000-00012 |
0.328 |
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| Show low-probability matches. |