Harinder Singh - Related publications

Affiliations: 
1989-2009 University of Chicago, Chicago, IL 
 2019- University of Pittsburgh, Pittsburgh, PA, United States 
Area:
Immunology
Website:
https://alleninstitute.org/about/advisors/advisor-profiles/harinder-singh/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2020 Levy O, Amit G, Vaknin D, Snir T, Efroni S, Castaldi P, Liu YY, Cohen HY, Bashan A. Age-related loss of gene-to-gene transcriptional coordination among single cells. Nature Metabolism. PMID 33139959 DOI: 10.1038/s42255-020-00304-4   
2020 Gouveia GR, Ferreira SC, Siqueira SAC, de Pádua Covas Lage LA, Hallack Neto AE, de Oliveira Costa R, Pereira J. Overexpression of OCT-1 gene is a biomarker of adverse prognosis for diffuse large B-cell lymphoma (DLBCL): data from a retrospective cohort of 77 Brazilian patients. Bmc Cancer. 20: 1041. PMID 33121489 DOI: 10.1186/s12885-020-07553-2   
2020 Zhou J, Zhao CC, Wu X, Shi JS, Zhou R, Wu ZF, Li ZC. Transcriptome heterogeneity of porcine ear fibroblast and its potential influence on embryo development in nuclear transplantation. Yi Chuan = Hereditas. 42: 898-915. PMID 32952124 DOI: 10.16288/j.yczz.20-190   
2020 Tarbier M, Mackowiak SD, Frade J, Catuara-Solarz S, Biryukova I, Gelali E, Menéndez DB, Zapata L, Ossowski S, Bienko M, Gallant CJ, Friedländer MR. Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells. Nature Communications. 11: 5445. PMID 33116115 DOI: 10.1038/s41467-020-19011-5   
2020 An SY, Lee M, Yoon HK, Abekura F, Kim KS, Kim DH, Kim HJ, Lee K, Kim CH, Lee YC. Regulation of human β-galactoside α2,6-sialyltransferase (hST6Gal I) gene expression during differentiation of human osteoblastic MG-63 cells. Glycoconjugate Journal. PMID 33108606 DOI: 10.1007/s10719-020-09959-3   
2020 Bandekar AC, Subedi S, Ioerger TR, Sassetti CM. Cell-Cycle-Associated Expression Patterns Predict Gene Function in Mycobacteria. Current Biology : Cb. PMID 32916109 DOI: 10.1016/j.cub.2020.07.070   
2020 Jasenosky LD, Nambu A, Tsytsykova AV, Ranjbar S, Haridas V, Kruidenier L, Tough DF, Goldfeld AE. Identification of a Distal Locus Enhancer Element That Controls Cell Type-Specific and Gene Expression in Human T Cells. Journal of Immunology (Baltimore, Md. : 1950). PMID 32978279 DOI: 10.4049/jimmunol.1901311   
2020 Tsai A, Galupa R, Crocker J. Robust and efficient gene regulation through localized nuclear microenvironments. Development (Cambridge, England). 147. PMID 33020073 DOI: 10.1242/dev.161430   
2020 Gómez-Saldivar G, Osuna-Luque J, Semple JI, Glauser DA, Jarriault S, Meister P. Tissue-Specific Transcription Footprinting Using NoI Dam (RAPID) in . Genetics. PMID 33037050 DOI: 10.1534/genetics.120.303774   
2020 Charest J, Daniele T, Wang J, Bykov A, Mandlbauer A, Asparuhova M, Röhsner J, Gutiérrez-Pérez P, Cochella L. Combinatorial Action of Temporally Segregated Transcription Factors. Developmental Cell. PMID 33002421 DOI: 10.1016/j.devcel.2020.09.002   
2020 Hu Y, Zhong J, Xiao Y, Xing Z, Sheu K, Fan S, An Q, Qiu Y, Zheng Y, Liu X, Fan G, Liu Y. Single-cell RNA cap and tail sequencing (scRCAT-seq) reveals subtype-specific isoforms differing in transcript demarcation. Nature Communications. 11: 5148. PMID 33051455 DOI: 10.1038/s41467-020-18976-7   
2020 Men S, Yu Y. Prospects for Use of Single-Cell Sequencing to Assess DNA Methylation in Asthma. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e925514. PMID 33009362 DOI: 10.12659/MSM.925514   
2020 Hammelman J, Krismer K, Banerjee B, Gifford DK, Sherwood RI. Identification of determinants of differential chromatin accessibility through a massively parallel genome-integrated reporter assay. Genome Research. PMID 32973041 DOI: 10.1101/gr.263228.120   
2020 Summers DK, Perry DS, Rao B, Madhani HD. Coordinate genomic association of transcription factors controlled by an imported quorum sensing peptide in Cryptococcus neoformans. Plos Genetics. 16: e1008744. PMID 32956370 DOI: 10.1371/journal.pgen.1008744   
2020 Brown CY, Sadlon T, Hope CM, Wong YY, Wong S, Liu N, Withers H, Brown K, Bandara V, Gundsambuu B, Pederson S, Breen J, Robertson SA, Forrest A, Beyer M, et al. Molecular Insights Into Regulatory T-Cell Adaptation to Self, Environment, and Host Tissues: Plasticity or Loss of Function in Autoimmune Disease. Frontiers in Immunology. 11: 1269. PMID 33072063 DOI: 10.3389/fimmu.2020.01269   
2020 Adlat S, Sah RK, Hayel F, Chen Y, Bah FB, Al-Azab M, Bahadar N, Myint M, Oo ZM, Nasser MI, Zhang L, Feng X, Zheng Y. Global transcriptome study of Dip2B-deficient mouse embryonic lung fibroblast reveals its important roles in cell proliferation and development. Computational and Structural Biotechnology Journal. 18: 2381-2390. PMID 33005301 DOI: 10.1016/j.csbj.2020.08.030   
2020 Xu H, Wang J, Liang Y, Fu Y, Li S, Huang J, Xu H, Zou W, Chen B. TriTag: an integrative tool to correlate chromatin dynamics and gene expression in living cells. Nucleic Acids Research. PMID 33104788 DOI: 10.1093/nar/gkaa906   
2020 Seruggia D, Fernández A, Cantero M, Fernández-Miñán A, Gomez-Skarmeta JL, Pelczar P, Montoliu L. Boundary sequences flanking the mouse tyrosinase locus ensure faithful pattern of gene expression. Scientific Reports. 10: 15494. PMID 32968154 DOI: 10.1038/s41598-020-72543-0   
2020 Ma S, Zhang B, LaFave LM, Earl AS, Chiang Z, Hu Y, Ding J, Brack A, Kartha VK, Tay T, Law T, Lareau C, Hsu YC, Regev A, Buenrostro JD. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin. Cell. PMID 33098772 DOI: 10.1016/j.cell.2020.09.056   
2020 Modesto P, Fernandez JLC, Martini I, Zoccola R, Pugliano MC, Ciucis CG, Goria M, Ferrari A, Razzuoli E. Characterization of D-17 Canine Osteosarcoma Cell Line and Evaluation of Its Ability to Response to Infective Stressor Used as Alternative Anticancer Therapy. Animals : An Open Access Journal From Mdpi. 10. PMID 33126659 DOI: 10.3390/ani10111981   
2020 Ziegler N, Bader E, Epanchintsev A, Margerie D, Kannt A, Schmoll D. AMPKβ1 and AMPKβ2 define an isoform-specific gene signature in human pluripotent stem cells, differentially mediating cardiac lineage specification. The Journal of Biological Chemistry. PMID 33067322 DOI: 10.1074/jbc.RA120.013990   
2020 Sun Y, Yu Q, Li L, Mei Z, Zhou B, Liu S, Pan T, Wu L, Lei Y, Liu L, Drmanac R, Ma K, Liu S. Single-cell RNA profiling links ncRNAs to spatiotemporal gene expression during C. elegans embryogenesis. Scientific Reports. 10: 18863. PMID 33139759 DOI: 10.1038/s41598-020-75801-3   
2020 Couture R, Martin LJ. The transcription factors SF-1 and SOX8 cooperate to upregulate expression in mouse TM4 sertoli cells. Biochemistry and Biophysics Reports. 24: 100828. PMID 33088929 DOI: 10.1016/j.bbrep.2020.100828   
2020 Zhao T, Lyu S, Lu G, Juan L, Zeng X, Wei Z, Hao J, Peng J. SC2disease: a manually curated database of single-cell transcriptome for human diseases. Nucleic Acids Research. PMID 33010177 DOI: 10.1093/nar/gkaa838   
2020 Yan P, Lu JY, Niu J, Gao J, Zhang MQ, Yin Y, Shen X. LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency. Journal of Molecular Cell Biology. PMID 33049031 DOI: 10.1093/jmcb/mjaa056   
2020 Peng L, Li EM, Xu LY. From start to end: phase separation and transcriptional regulation. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194641. PMID 33017669 DOI: 10.1016/j.bbagrm.2020.194641   
2020 Li L, Li Y, Timothy Sembiring Meliala I, Kasim V, Wu S. Biological roles of Yin Yang 2: Its implications in physiological and pathological events. Journal of Cellular and Molecular Medicine. PMID 32969187 DOI: 10.1111/jcmm.15919   
2020 Meng C, Kunliu, Lv Z, Zhang Y, Li J, Luo X, Qiang H, Li K, Liu F, Zhang B, Cui F. Inflammation and Immunity Gene Expression Profiling of Macrophages on Mineralized Collagen. Journal of Biomedical Materials Research. Part A. PMID 33089616 DOI: 10.1002/jbm.a.37124   
2020 Robert VJ, Knutson AK, Rechtsteiner A, Garvis S, Yvert G, Strome S, Palladino F. SET1/COMPASS Maintains Germline Identity by Preventing Transcriptional Deregulation Across Generations. Frontiers in Cell and Developmental Biology. 8: 561791. PMID 33072747 DOI: 10.3389/fcell.2020.561791   
2020 Soules KR, LaBrie SD, May BH, Hefty PS. Sigma 54-Regulated Transcription Is Associated with Membrane Reorganization and Type III Secretion Effectors during Conversion to Infectious Forms of Chlamydia trachomatis. Mbio. 11. PMID 32900805 DOI: 10.1128/mBio.01725-20   
2020 Hubbard EL, Catalina MD, Heuer S, Bachali P, Robl R, Geraci NS, Grammer AC, Lipsky PE. Analysis of gene expression from systemic lupus erythematosus synovium reveals myeloid cell-driven pathogenesis of lupus arthritis. Scientific Reports. 10: 17361. PMID 33060686 DOI: 10.1038/s41598-020-74391-4   
2020 Zarnack K, Balasubramanian S, Gantier MP, Kunetsky V, Kracht M, Schmitz ML, Sträßer K. Dynamic mRNP Remodeling in Response to Internal and External Stimuli. Biomolecules. 10. PMID 32932892 DOI: 10.3390/biom10091310   
2020 Lu J, Huang XY, Wang YH, Xie JW, Wang JB, Lin JX, Chen QY, Cao LL, Li P, Huang CM, Zheng CH. POC1A acts as a promising prognostic biomarker associated with high tumor immune cell infiltration in gastric cancer. Aging. 12: 18982-19011. PMID 33052878 DOI: 10.18632/aging.103624   
2020 Kwak M, Erdag G, Slingluff CL. Gene expression analysis in formalin fixed paraffin embedded melanomas is associated with density of corresponding immune cells in those tissues. Scientific Reports. 10: 18336. PMID 33110110 DOI: 10.1038/s41598-020-74996-9   
2020 Aljazi MB, Gao Y, Wu Y, Mias GI, He J. Cell Signaling Coordinates Global PRC2 Recruitment and Developmental Gene Expression in Murine Embryonic Stem Cells. Iscience. 23: 101646. PMID 33103084 DOI: 10.1016/j.isci.2020.101646   
2020 Leszczyński P, Śmiech M, Salam Teeli A, Haque E, Viger R, Ogawa H, Pierzchała M, Taniguchi H. Deletion of the Gene Causes a Neuronal Differentiation Deficiency in P19 Cells. International Journal of Molecular Sciences. 21. PMID 33003409 DOI: 10.3390/ijms21197192   
2020 Leszczyński P, Śmiech M, Salam Teeli A, Haque E, Viger R, Ogawa H, Pierzchała M, Taniguchi H. Deletion of the Gene Causes a Neuronal Differentiation Deficiency in P19 Cells. International Journal of Molecular Sciences. 21. PMID 33003409 DOI: 10.3390/ijms21197192   
2020 Assouvie A, Rotival M, Hamroune J, Busso D, Romeo PH, Quintana-Murci L, Rousselet G. A genetic variant controls interferon-β gene expression in human myeloid cells by preventing C/EBP-β binding on a conserved enhancer. Plos Genetics. 16: e1009090. PMID 33147208 DOI: 10.1371/journal.pgen.1009090   
2020 Serizay J, Dong Y, Janes J, Chesney M, Cerrato C, Ahringer J. Distinctive regulatory architectures of germline-active and somatic genes in . Genome Research. PMID 33093068 DOI: 10.1101/gr.265934.120   
2020 Zhang B, Sun T. Transcription Factors That Regulate the Pathogenesis of Ulcerative Colitis. Biomed Research International. 2020: 7402657. PMID 32908909 DOI: 10.1155/2020/7402657   
2020 Terzi Cizmecioglu N, Huang J, Keskin EG, Wang X, Esen I, Chen F, Orkin SH. Arid4b is critical for mouse embryonic stem cell differentiation towards mesoderm and endoderm, linking epigenetics to pluripotency exit. The Journal of Biological Chemistry. PMID 33060200 DOI: 10.1074/jbc.RA120.015534   
2020 Choi WY, Hwang JH, Cho AN, Lee AJ, Lee J, Jung I, Cho SW, Kim LK, Kim YJ. DNA Methylation of Intragenic CpG Islands are Required for Differentiation from iPSC to NPC. Stem Cell Reviews and Reports. PMID 32975781 DOI: 10.1007/s12015-020-10041-6   
2020 Fazal Z, Singh R, Fang F, Bikorimana E, Baldwin H, Corbet A, Tomlin M, Yerby C, Adra N, Albany C, Lee S, Freemantle SJ, Nephew KP, Christensen BC, Spinella MJ. Hypermethylation and global remodelling of DNA methylation is associated with acquired cisplatin resistance in testicular germ cell tumours. Epigenetics. 1-14. PMID 33126827 DOI: 10.1080/15592294.2020.1834926   
2020 Kirtana R, Manna S, Patra SK. Molecular mechanisms of KDM5A in cellular functions: Facets during development and disease. Experimental Cell Research. 112314. PMID 33010254 DOI: 10.1016/j.yexcr.2020.112314   
2020 Kirtana R, Manna S, Patra SK. Molecular mechanisms of KDM5A in cellular functions: Facets during development and disease. Experimental Cell Research. 112314. PMID 33010254 DOI: 10.1016/j.yexcr.2020.112314   
2020 Cai SY, Yu D, Soroka CJ, Wang J, Boyer JL. Hepatic NFAT signaling regulates the expression of inflammatory cytokines in cholestasis. Journal of Hepatology. PMID 33039404 DOI: 10.1016/j.jhep.2020.09.035   
2020 Kang M, Lee S, Lee D, Kim S. Learning Cell-Type-Specific Gene Regulation Mechanisms by Multi-Attention Based Deep Learning With Regulatory Latent Space. Frontiers in Genetics. 11: 869. PMID 33133123 DOI: 10.3389/fgene.2020.00869   
2020 Khundmiri SJ, Chen L, Lederer ED, Yang CR, Knepper MA. Transcriptomes of Major Proximal Tubule Cell Culture Models. Journal of the American Society of Nephrology : Jasn. PMID 33122286 DOI: 10.1681/ASN.2020010009   
2020 Wang Z, Sheng C, Kan G, Yao C, Geng R, Chen S. RNAi Screening Identifies that TEX10 Promotes the Proliferation of Colorectal Cancer Cells by Increasing NF-B Activation. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 7: 2000593. PMID 32995120 DOI: 10.1002/advs.202000593   
2020 Hallikas O, Das Roy R, Christensen MM, Renvoisé E, Sulic AM, Jernvall J. System-level analyses of keystone genes required for mammalian tooth development. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 33128445 DOI: 10.1002/jez.b.23009