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Ruibing Chen, Ph.D. - Publications

Affiliations: 
2009 University of Wisconsin, Madison, Madison, WI 
Area:
Bioanalytical Chemistry, Mass Spectrometry, Microseparations, Proteomics & Peptidomics, Neurochemistry
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang H, Luo F, Shao X, Gao Y, Jiang N, Jia C, Li H, Chen R. Integrated Proteomics and Single-Cell Mass Cytometry Analysis Dissects the Immune Landscape of Ankylosing Spondylitis. Analytical Chemistry. PMID 37126452 DOI: 10.1021/acs.analchem.3c00809  0.511
2021 Chen R, Liu Y, Zhuang H, Yang B, Hei K, Xiao M, Hou C, Gao H, Zhang X, Jia C, Li L, Li Y, Zhang N. Corrigendum to article "Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation''. Nucleic Acids Research. PMID 33751109 DOI: 10.1093/nar/gkab222  0.526
2020 Zhang P, Wu X, Liang S, Shao X, Wang Q, Chen R, Zhu W, Shao C, Jin F, Jia C. A dynamic mouse peptidome landscape reveals probiotic modulation of the gut-brain axis. Science Signaling. 13. PMID 32723811 DOI: 10.1126/Scisignal.Abb0443  0.513
2018 Wang H, Shao X, He Q, Wang C, Xia L, Yue D, Qin G, Jia C, Chen R. Quantitative proteomics implicates Rictor/mTORC2 in cell adhesion. Journal of Proteome Research. PMID 30156101 DOI: 10.1021/Acs.Jproteome.8B00218  0.539
2018 Shao X, Ma M, Chen R, Jia C. [Identification of mouse brain neuropeptides by high throughput mass spectrometry]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 34: 594-601. PMID 29701033 DOI: 10.13345/J.Cjb.170361  0.595
2017 Chen R, Liu Y, Zhuang H, Yang B, Hei K, Xiao M, Hou C, Gao H, Zhang X, Jia C, Li L, Li Y, Zhang N. Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation. Nucleic Acids Research. 45: 9947-9959. PMID 28973437 DOI: 10.1093/Nar/Gkx600  0.594
2016 Glicksberg BS, Li L, Badgeley MA, Shameer K, Kosoy R, Beckmann ND, Pho N, Hakenberg J, Ma M, Ayers KL, Hoffman GE, Dan Li S, Schadt EE, Patel CJ, Chen R, et al. Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinformatics (Oxford, England). 32: i101-i110. PMID 27307606 DOI: 10.1093/Bioinformatics/Btw282  0.358
2016 Chen R, Xiao M, Gao H, Chen Y, Li Y, Liu Y, Zhang N. Identification of a novel mitochondrial interacting protein of C1QBP using subcellular fractionation coupled with CoIP-MS. Analytical and Bioanalytical Chemistry. PMID 26753982 DOI: 10.1007/S00216-015-9228-7  0.343
2015 Lv Y, Zhang G, Ma Y, Ma M, Liao R, Xiang J, Chen R, Yan X, Bie F, Huang M, Liang S. Shenqi Fuzheng Injection Combined with Chemotherapy for Breast Cancer: A Meta-Analysis of Randomized Controlled Trials. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 635858. PMID 26495018 DOI: 10.1155/2015/635858  0.353
2015 Gao HJ, Chen YJ, Zuo D, Xiao MM, Li Y, Guo H, Zhang N, Chen RB. Quantitative proteomic analysis for high-throughput screening of differential glycoproteins in hepatocellular carcinoma serum. Cancer Biology & Medicine. 12: 246-54. PMID 26487969 DOI: 10.7497/J.Issn.2095-3941.2015.0010  0.315
2015 Chen J, Cao W, Chen R, Ren Y, Li T. Prevalence and determinants of HIV in TB patients in Wuxi City, Jiangsu province, China: a cross-sectional study. International Journal of Std & Aids. PMID 26482328 DOI: 10.1177/0956462415612618  0.378
2015 Wang Y, Li Z, Zheng S, Zhou Y, Zhao L, Ye H, Zhao X, Gao W, Fu Z, Zhou Q, Liu Y, Chen R. Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers. Oncotarget. PMID 26447755 DOI: 10.18632/oncotarget.5533  0.403
2015 Li D, Fu Z, Chen R, Zhao X, Zhou Y, Zeng B, Yu M, Zhou Q, Lin Q, Gao W, Ye H, Zhou J, Li Z, Liu Y, Chen R. Inhibition of glutamine metabolism counteracts pancreatic cancer stem cell features and sensitizes cells to radiotherapy. Oncotarget. PMID 26439804  0.369
2015 Chen R, Wu X, Jin H, Wang B, Ma M, Zhao B. Assessment of Left Atrial Appendage Morphology and Function in Patients with Non-valvular Paroxysmal Atrial Fibrillation with Different Rhythms Using Real-Time 3D Transesophageal Echocardiography. Ultrasound in Medicine & Biology. PMID 26433439 DOI: 10.1016/j.ultrasmedbio.2015.08.011  0.351
2015 Glicksberg BS, Li L, Cheng WY, Shameer K, Hakenberg J, Castellanos R, Ma M, Shi L, Shah H, Dudley JT, Chen R. An integrative pipeline for multi-modal discovery of disease relationships. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 407-18. PMID 25592600  0.35
2015 Wang Y, Yue D, Xiao M, Qi C, Chen Y, Sun D, Zhang N, Chen R. C1QBP negatively regulates the activation of oncoprotein YBX1 in the renal cell carcinoma as revealed by interactomics analysis. Journal of Proteome Research. 14: 804-13. PMID 25497084 DOI: 10.1021/Pr500847P  0.334
2015 Menon MC, Chuang PY, Li Z, Wei C, Zhang W, Luan Y, Yi Z, Xiong H, Woytovich C, Greene I, Overbey J, Rosales I, Bagiella E, Chen R, Ma M, et al. Intronic locus determines SHROOM3 expression and potentiates renal allograft fibrosis. The Journal of Clinical Investigation. 125: 208-21. PMID 25437874 DOI: 10.1172/Jci76902  0.353
2014 Chen R, Ouyang C, Xiao M, Li L. In situ identification and mapping of neuropeptides from the stomatogastric nervous system of Cancer borealis. Rapid Communications in Mass Spectrometry : Rcm. 28: 2437-44. PMID 25303472 DOI: 10.1002/Rcm.7037  0.504
2014 Chen R, Xiao M, Buchberger A, Li L. Quantitative neuropeptidomics study of the effects of temperature change in the crab Cancer borealis. Journal of Proteome Research. 13: 5767-76. PMID 25214466 DOI: 10.1021/Pr500742Q  0.406
2014 Xiao M, Chen Y, Yu H, Wei S, Yu K, Zhao H, Chen R. Analysis of the whole serum proteome using an integrated 2D LC-MS/MS system Analytical Methods. 6: 7157-7160. DOI: 10.1039/C4Ay01274G  0.405
2013 Zhang X, Zhang F, Guo L, Wang Y, Zhang P, Wang R, Zhang N, Chen R. Interactome analysis reveals that C1QBP (complement component 1, q subcomponent binding protein) is associated with cancer cell chemotaxis and metastasis. Molecular & Cellular Proteomics : McP. 12: 3199-209. PMID 23924515 DOI: 10.1074/Mcp.M113.029413  0.354
2013 Ye H, Gemperline E, Venkateshwaran M, Chen R, Delaux PM, Howes-Podoll M, Ané JM, Li L. MALDI mass spectrometry-assisted molecular imaging of metabolites during nitrogen fixation in the Medicago truncatula-Sinorhizobium meliloti symbiosis. The Plant Journal : For Cell and Molecular Biology. 75: 130-45. PMID 23551619 DOI: 10.1111/Tpj.12191  0.601
2013 Sturm RM, Greer T, Chen R, Hensen B, Li L. Comparison of NIMS and MALDI platforms for neuropeptide and lipid mass spectrometric imaging in C. borealis brain tissue. Analytical Methods : Advancing Methods and Applications. 5: 1623-1628. PMID 23544036 DOI: 10.1039/C3Ay26067D  0.723
2013 Chen R, Wang Y, Liu Y, Zhang Q, Zhang X, Zhang F, Shieh CH, Yang D, Zhang N. Quantitative study of the interactome of PKCζ involved in the EGF-induced tumor cell chemotaxis. Journal of Proteome Research. 12: 1478-86. PMID 23402259 DOI: 10.1021/Pr3011292  0.357
2012 Jia C, Hui L, Cao W, Lietz CB, Jiang X, Chen R, Catherman AD, Thomas PM, Ge Y, Kelleher NL, Li L. High-definition de novo sequencing of crustacean hyperglycemic hormone (CHH)-family neuropeptides. Molecular & Cellular Proteomics : McP. 11: 1951-64. PMID 23028060 DOI: 10.1074/Mcp.M112.020537  0.782
2012 Jiang X, Chen R, Wang J, Metzler A, Tlusty M, Li L. Mass spectral charting of neuropeptidomic expression in the stomatogastric ganglion at multiple developmental stages of the lobster Homarus americanus. Acs Chemical Neuroscience. 3: 439-50. PMID 22860213 DOI: 10.1021/Cn200107V  0.676
2011 Szabo TM, Chen R, Goeritz ML, Maloney RT, Tang LS, Li L, Marder E. Distribution and physiological effects of B-type allatostatins (myoinhibitory peptides, MIPs) in the stomatogastric nervous system of the crab Cancer borealis. The Journal of Comparative Neurology. 519: 2658-76. PMID 21491432 DOI: 10.1002/Cne.22654  0.482
2010 Chen R, Cape SS, Sturm RM, Li L. Mass spectrometric imaging of neuropeptides in decapod crustacean neuronal tissues. Methods in Molecular Biology (Clifton, N.J.). 656: 451-63. PMID 20680607 DOI: 10.1007/978-1-60761-746-4_26  0.712
2010 Chen R, Li L. Mass spectral imaging and profiling of neuropeptides at the organ and cellular domains. Analytical and Bioanalytical Chemistry. 397: 3185-93. PMID 20419488 DOI: 10.1007/S00216-010-3723-7  0.602
2010 Chen R, Hui L, Cape SS, Wang J, Li L. Comparative Neuropeptidomic Analysis of Food Intake via a Multi-faceted Mass Spectrometric Approach. Acs Chemical Neuroscience. 1: 204-214. PMID 20368756 DOI: 10.1021/Cn900028S  0.696
2010 Xiang F, Ye H, Chen R, Fu Q, Li L. N,N-dimethyl leucines as novel isobaric tandem mass tags for quantitative proteomics and peptidomics. Analytical Chemistry. 82: 2817-25. PMID 20218596 DOI: 10.1021/Ac902778D  0.731
2010 Chen R, Jiang X, Conaway MC, Mohtashemi I, Hui L, Viner R, Li L. Mass spectral analysis of neuropeptide expression and distribution in the nervous system of the lobster Homarus americanus. Journal of Proteome Research. 9: 818-32. PMID 20025296 DOI: 10.1021/Pr900736T  0.742
2009 Chen R, Hui L, Sturm RM, Li L. Three dimensional mapping of neuropeptides and lipids in crustacean brain by mass spectral imaging. Journal of the American Society For Mass Spectrometry. 20: 1068-77. PMID 19264504 DOI: 10.1016/J.Jasms.2009.01.017  0.77
2009 Ma M, Wang J, Chen R, Li L. Expanding the Crustacean neuropeptidome using a multifaceted mass spectrometric approach. Journal of Proteome Research. 8: 2426-37. PMID 19222238 DOI: 10.1021/Pr801047V  0.697
2009 Thomas-Virnig CL, Centanni JM, Johnston CE, He LK, Schlosser SJ, Van Winkle KF, Chen R, Gibson AL, Szilagyi A, Li L, Shankar R, Allen-Hoffmann BL. Inhibition of multidrug-resistant Acinetobacter baumannii by nonviral expression of hCAP-18 in a bioengineered human skin tissue. Molecular Therapy : the Journal of the American Society of Gene Therapy. 17: 562-9. PMID 19190595 DOI: 10.1038/Mt.2008.289  0.444
2009 Chen R, Ma M, Hui L, Zhang J, Li L. Measurement of neuropeptides in crustacean hemolymph via MALDI mass spectrometry. Journal of the American Society For Mass Spectrometry. 20: 708-18. PMID 19185513 DOI: 10.1016/J.Jasms.2008.12.007  0.761
2009 Ma M, Chen R, Ge Y, He H, Marshall AG, Li L. Combining bottom-up and top-down mass spectrometric strategies for de novo sequencing of the crustacean hyperglycemic hormone from Cancer borealis. Analytical Chemistry. 81: 240-7. PMID 19046072 DOI: 10.1021/Ac801910G  0.674
2008 Behrens HL, Chen R, Li L. Combining microdialysis, NanoLC-MS, and MALDI-TOF/TOF to detect neuropeptides secreted in the crab, Cancer borealis. Analytical Chemistry. 80: 6949-58. PMID 18700782 DOI: 10.1021/Ac800798H  0.763
2008 Wang J, Ma M, Chen R, Li L. Enhanced neuropeptide profiling via capillary electrophoresis off-line coupled with MALDI FTMS. Analytical Chemistry. 80: 6168-77. PMID 18642879 DOI: 10.1021/Ac800382T  0.646
2008 Ma M, Chen R, Sousa GL, Bors EK, Kwiatkowski MA, Goiney CC, Goy MF, Christie AE, Li L. Mass spectral characterization of peptide transmitters/hormones in the nervous system and neuroendocrine organs of the American lobster Homarus americanus. General and Comparative Endocrinology. 156: 395-409. PMID 18304551 DOI: 10.1016/J.Ygcen.2008.01.009  0.673
2008 Wang J, Chen R, Ma M, Li L. MALDI MS sample preparation by using paraffin wax film: systematic study and application for peptide analysis. Analytical Chemistry. 80: 491-500. PMID 18189446 DOI: 10.1021/Ac701614F  0.648
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