Judith Berman - Publications

University of Minnesota, Twin Cities, Minneapolis, MN 
Molecular Biology, Biochemistry

119 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yang F, Todd RT, Selmecki A, Jiang YY, Cao YB, Berman J. The fitness costs and benefits of trisomy of each Candida albicans chromosome. Genetics. PMID 33837402 DOI: 10.1093/genetics/iyab056  0.712
2020 Gale AN, Sakhawala RM, Levitan A, Sharan R, Berman J, Timp W, Cunningham KW. Identification of Essential Genes and Fluconazole Susceptibility Genes in by Profiling Transposon Insertions. G3 (Bethesda, Md.). PMID 32819971 DOI: 10.1534/G3.120.401595  0.385
2020 Tits J, Cools F, De Cremer K, De Brucker K, Berman J, Verbruggen K, Gevaert B, Cos P, Cammue BPA, Thevissen K. Combination of miconazole and domiphen bromide is fungicidal against biofilms of resistant spp. Antimicrobial Agents and Chemotherapy. PMID 32690639 DOI: 10.1128/Aac.01296-20  0.303
2020 Levitan A, Gale AN, Dallon EK, Kozan DW, Cunningham KW, Sharan R, Berman J. Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality. Current Genetics. PMID 32681306 DOI: 10.1007/S00294-020-01096-6  0.351
2019 Price RJ, Weindling E, Berman J, Buscaino A. Chromatin Profiling of the Repetitive and Nonrepetitive Genomes of the Human Fungal Pathogen Candida albicans. Mbio. 10. PMID 31337722 DOI: 10.1128/Mbio.01376-19  0.339
2019 Forche A, Solis NV, Swidergall M, Thomas R, Guyer A, Beach A, Cromie GA, Le GT, Lowell E, Pavelka N, Berman J, Dudley AM, Selmecki A, Filler SG. Selection of Candida albicans trisomy during oropharyngeal infection results in a commensal-like phenotype. Plos Genetics. 15: e1008137. PMID 31091232 DOI: 10.1371/Journal.Pgen.1008137  0.735
2019 Yang F, Teoh F, Tan ASM, Cao Y, Pavelka N, Berman J. Aneuploidy enables cross-adaptation to unrelated drugs. Molecular Biology and Evolution. PMID 31028698 DOI: 10.1093/Molbev/Msz104  0.384
2019 Bijlani S, Thevandavakkam MA, Tsai HJ, Berman J. Autonomously Replicating Linear Plasmids That Facilitate the Analysis of Replication Origin Function in . Msphere. 4. PMID 30842269 DOI: 10.1128/mSphere.00103-19  0.593
2019 Stone NR, Rhodes J, Fisher MC, Mfinanga S, Kivuyo S, Rugemalila J, Segal ES, Needleman L, Molloy SF, Kwon-Chung J, Harrison TS, Hope W, Berman J, Bicanic T. Dynamic ploidy changes drive fluconazole resistance in human cryptococcal meningitis. The Journal of Clinical Investigation. PMID 30688656 DOI: 10.1172/Jci124516  0.305
2018 Segal ES, Gritsenko V, Levitan A, Yadav B, Dror N, Steenwyk JL, Silberberg Y, Mielich K, Rokas A, Gow NAR, Kunze R, Sharan R, Berman J. Gene Essentiality Analyzed by Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of . Mbio. 9. PMID 30377286 DOI: 10.1128/Mbio.02048-18  0.384
2018 Uppuluri P, Acosta Zaldívar M, Anderson MZ, Dunn MJ, Berman J, Lopez Ribot JL, Köhler JR. Dispersed Cells Are Developmentally Distinct from Biofilm and Planktonic Cells. Mbio. 9. PMID 30131358 DOI: 10.1128/Mbio.01338-18  0.772
2018 Rosenberg A, Ene IV, Bibi M, Zakin S, Segal ES, Ziv N, Dahan AM, Colombo AL, Bennett RJ, Berman J. Antifungal tolerance is a subpopulation effect distinct from resistance and is associated with persistent candidemia. Nature Communications. 9: 2470. PMID 29941885 DOI: 10.1038/S41467-018-04926-X  0.578
2018 Forche A, Cromie G, Gerstein AC, Solis NV, Pisithkul T, Srifa W, Jeffery E, Abbey D, Filler SG, Dudley AM, Berman J. Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche in . Genetics. PMID 29724862 DOI: 10.1534/Genetics.118.301019  0.35
2018 Dunn MJ, Kinney GM, Washington PM, Berman J, Anderson MZ. Functional diversification accompanies gene family expansion of MED2 homologs in Candida albicans. Plos Genetics. 14: e1007326. PMID 29630599 DOI: 10.1371/Journal.Pgen.1007326  0.771
2018 Mielich K, Shtifman-Segal E, Golz JC, Zeng G, Wang Y, Berman J, Kunze R. Maize Transposable Elements Ac/Ds as Insertion Mutagenesis Tools in Candida albicans. G3 (Bethesda, Md.). PMID 29378819 DOI: 10.1534/G3.117.300388  0.391
2017 Mandelblat M, Frenkel M, Abbey D, Ben Ami R, Berman J, Segal E. Phenotypic and genotypic characteristics of Candida albicans isolates from bloodstream and mucosal infections. Mycoses. PMID 28543785 DOI: 10.1111/Myc.12623  0.365
2017 Gonia S, Berman J, Gale CA. Generation of Fluorescent Protein Fusions in Candida Species. Journal of Visualized Experiments : Jove. PMID 28287596 DOI: 10.3791/55333  0.344
2017 Gerstein AC, Lim H, Berman J, Hickman MA. Ploidy tug-of-war: evolutionary and genetic environments influence the rate of ploidy drive in a human fungal pathogen. Evolution; International Journal of Organic Evolution. PMID 28195309 DOI: 10.1111/Evo.13205  0.34
2017 Berman J, Forche A. Haplotyping a Non-meiotic Diploid Fungal Pathogen Using Induced Aneuploidies and SNP/CGH Microarray Analysis. Methods in Molecular Biology (Clifton, N.J.). 1551: 131-146. PMID 28138844 DOI: 10.1007/978-1-4939-6750-6_7  0.331
2017 Ben-Ami R, Berman J, Novikov A, Bash E, Shachor-Meyouhas Y, Zakin S, Maor Y, Tarabia J, Schechner V, Adler A, Finn T. Multidrug-Resistant Candida haemulonii and C. auris, Tel Aviv, Israel. Emerging Infectious Diseases. 23. PMID 28098529 DOI: 10.3201/Eid2302.161486  0.331
2016 Wertheimer NB, Stone N, Berman J. Ploidy dynamics and evolvability in fungi. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 28080987 DOI: 10.1098/Rstb.2015.0461  0.365
2016 Burrack LS, Hutton HF, Matter KJ, Clancey SA, Liachko I, Plemmons AE, Saha A, Power EA, Turman B, Thevandavakkam MA, Ay F, Dunham MJ, Berman J. Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome. Plos Genetics. 12: e1006317. PMID 27662467 DOI: 10.1371/Journal.Pgen.1006317  0.392
2016 Ben-Ami R, Zimmerman O, Finn T, Amit S, Novikov A, Wertheimer N, Lurie-Weinberger M, Berman J. Heteroresistance to Fluconazole Is a Continuously Distributed Phenotype among Candida glabrata Clinical Strains Associated with In Vivo Persistence. Mbio. 7. PMID 27486188 DOI: 10.1128/Mbio.00655-16  0.371
2016 Freire-Benéitez V, Gourlay S, Berman J, Buscaino A. Sir2 regulates stability of repetitive domains differentially in the human fungal pathogen Candida albicans. Nucleic Acids Research. PMID 27369382 DOI: 10.1093/Nar/Gkw594  0.38
2016 Ciudad T, Hickman M, Bellido A, Berman J, Larriba G. The Phenotypic Consequences of a Spontaneous Loss of Heterozygosity in a Common Laboratory Strain of Candida Albicans. Genetics. PMID 27206717 DOI: 10.1534/Genetics.116.189274  0.372
2016 Gerstein AC, Rosenberg A, Hecht I, Berman JG. diskImageR: Quantification of resistance and tolerance to antimicrobial drugs using disk diffusion assays. Microbiology (Reading, England). PMID 27126388 DOI: 10.1099/Mic.0.000295  0.315
2016 Freire-Benéitez V, Price RJ, Tarrant D, Berman J, Buscaino A. Candida albicans repetitive elements display epigenetic diversity and plasticity. Scientific Reports. 6: 22989. PMID 26971880 DOI: 10.1038/Srep22989  0.369
2016 Berman J. Ploidy plasticity: a rapid and reversible strategy for adaptation to stress. Fems Yeast Research. PMID 26945893 DOI: 10.1093/Femsyr/Fow020  0.412
2016 Thomson DD, Berman J, Brand AC. High frame-rate resolution of cell division during Candida albicans filamentation. Fungal Genetics and Biology : Fg & B. PMID 26854071 DOI: 10.1016/J.Fgb.2016.02.001  0.373
2015 Hickman MA, Zeng G, Forche A, Hirakawa MP, Abbey D, Harrison BD, Wang YM, Su CH, Bennett RJ, Wang Y, Berman J. Corrigendum: The 'obligate diploid' Candida albicans forms mating-competent haploids. Nature. PMID 26580011 DOI: 10.1038/Nature16134  0.538
2015 Gerstein AC, Fu MS, Mukaremera L, Li Z, Ormerod KL, Fraser JA, Berman J, Nielsen K. Polyploid Titan Cells Produce Haploid and Aneuploid Progeny To Promote Stress Adaptation. Mbio. 6. PMID 26463162 DOI: 10.1128/Mbio.01340-15  0.347
2015 McCoy KM, Tubman ES, Claas A, Tank D, Clancy SA, O'Toole ET, Berman J, Odde DJ. Physical limits on kinesin-5-mediated chromosome congression in the smallest mitotic spindles. Molecular Biology of the Cell. 26: 3999-4014. PMID 26354423 DOI: 10.1091/Mbc.E14-10-1454  0.389
2015 Gerstein AC, Berman J. Shift and adapt: the costs and benefits of karyotype variations. Current Opinion in Microbiology. 26: 130-6. PMID 26321163 DOI: 10.1016/J.Mib.2015.06.010  0.356
2015 Hickman MA, Paulson C, Dudley A, Berman J. Parasexual Ploidy Reduction Drives Population Heterogeneity Through Random and Transient Aneuploidy in Candida albicans. Genetics. 200: 781-94. PMID 25991822 DOI: 10.1534/Genetics.115.178020  0.4
2015 Anderson MZ, Wigen LJ, Burrack LS, Berman J. Real-Time Evolution of a Subtelomeric Gene Family in Candida albicans. Genetics. PMID 25956943 DOI: 10.1534/Genetics.115.177451  0.712
2015 Chen G, Mulla WA, Kucharavy A, Tsai HJ, Rubinstein B, Conkright J, McCroskey S, Bradford WD, Weems L, Haug JS, Seidel CW, Berman J, Li R. Targeting the adaptability of heterogeneous aneuploids. Cell. 160: 771-84. PMID 25679766 DOI: 10.1016/J.Cell.2015.01.026  0.616
2015 Sullivan DJ, Berman J, Myers LC, Moran GP. Telomeric ORFS in Candida albicans: does mediator tail wag the yeast? Plos Pathogens. 11: e1004614. PMID 25675446 DOI: 10.1371/Journal.Ppat.1004614  0.397
2015 Ford CB, Funt JM, Abbey D, Issi L, Guiducci C, Martinez DA, Delorey T, Li BY, White TC, Cuomo C, Rao RP, Berman J, Thompson DA, Regev A. The evolution of drug resistance in clinical isolates of Candida albicans. Elife. 4: e00662. PMID 25646566 DOI: 10.7554/Elife.00662  0.34
2015 Hirakawa MP, Martinez DA, Sakthikumar S, Anderson MZ, Berlin A, Gujja S, Zeng Q, Zisson E, Wang JM, Greenberg JM, Berman J, Bennett RJ, Cuomo CA. Genetic and phenotypic intra-species variation in Candida albicans. Genome Research. 25: 413-25. PMID 25504520 DOI: 10.1101/Gr.174623.114  0.8
2014 Abbey DA, Funt J, Lurie-Weinberger MN, Thompson DA, Regev A, Myers CL, Berman J. YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens. Genome Medicine. 6: 100. PMID 25505934 DOI: 10.1186/S13073-014-0100-8  0.351
2014 Haran J, Boyle H, Hokamp K, Yeomans T, Liu Z, Church M, Fleming AB, Anderson MZ, Berman J, Myers LC, Sullivan DJ, Moran GP. Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits. Plos Genetics. 10: e1004658. PMID 25356803 DOI: 10.1371/Journal.Pgen.1004658  0.718
2014 Tsai HJ, Baller JA, Liachko I, Koren A, Burrack LS, Hickman MA, Thevandavakkam MA, Rusche LN, Berman J. Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres. Mbio. 5: e01703-14. PMID 25182328 DOI: 10.1128/Mbio.01703-14  0.63
2014 Bennett RJ, Forche A, Berman J. Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harbor Perspectives in Medicine. 4. PMID 25081629 DOI: 10.1101/Cshperspect.A019604  0.618
2014 Anderson MZ, Gerstein AC, Wigen L, Baller JA, Berman J. Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2. Plos Genetics. 10: e1004436. PMID 25057900 DOI: 10.1371/Journal.Pgen.1004436  0.697
2014 Harrison BD, Hashemi J, Bibi M, Pulver R, Bavli D, Nahmias Y, Wellington M, Sapiro G, Berman J. A tetraploid intermediate precedes aneuploid formation in yeasts exposed to fluconazole. Plos Biology. 12: e1001815. PMID 24642609 DOI: 10.1371/Journal.Pbio.1001815  0.793
2013 Burrack LS, Applen Clancey SE, Chacón JM, Gardner MK, Berman J. Monopolin recruits condensin to organize centromere DNA and repetitive DNA sequences. Molecular Biology of the Cell. 24: 2807-19. PMID 23885115 DOI: 10.1091/Mbc.E13-05-0229  0.43
2013 Hickman MA, Zeng G, Forche A, Hirakawa MP, Abbey D, Harrison BD, Wang YM, Su CH, Bennett RJ, Wang Y, Berman J. The 'obligate diploid' Candida albicans forms mating-competent haploids. Nature. 494: 55-9. PMID 23364695 DOI: 10.1038/Nature11865  0.648
2013 Gerami-Nejad M, Zacchi LF, McClellan M, Matter K, Berman J. Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans. Microbiology (Reading, England). 159: 565-79. PMID 23306673 DOI: 10.1099/Mic.0.064097-0  0.749
2012 Anderson MZ, Baller JA, Dulmage K, Wigen L, Berman J. The three clades of the telomere-associated TLO gene family of Candida albicans have different splicing, localization, and expression features. Eukaryotic Cell. 11: 1268-75. PMID 22923044 DOI: 10.1128/Ec.00230-12  0.705
2012 Shivaraju M, Unruh JR, Slaughter BD, Mattingly M, Berman J, Gerton JL. Cell-cycle-coupled structural oscillation of centromeric nucleosomes in yeast. Cell. 150: 304-16. PMID 22817893 DOI: 10.1016/J.Cell.2012.05.034  0.338
2012 Gerami-Nejad M, Forche A, McClellan M, Berman J. Analysis of protein function in clinical C. albicans isolates. Yeast (Chichester, England). 29: 303-9. PMID 22777821 DOI: 10.1002/Yea.2910  0.37
2012 Burrack LS, Berman J. Neocentromeres and epigenetically inherited features of centromeres. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 20: 607-19. PMID 22723125 DOI: 10.1007/S10577-012-9296-X  0.387
2012 Burrack LS, Berman J. Flexibility of centromere and kinetochore structures. Trends in Genetics : Tig. 28: 204-12. PMID 22445183 DOI: 10.1016/J.Tig.2012.02.003  0.4
2011 Abbey D, Hickman M, Gresham D, Berman J. High-Resolution SNP/CGH Microarrays Reveal the Accumulation of Loss of Heterozygosity in Commonly Used Candida albicans Strains. G3 (Bethesda, Md.). 1: 523-30. PMID 22384363 DOI: 10.1534/G3.111.000885  0.392
2011 Huang M, McClellan M, Berman J, Kao KC. Evolutionary dynamics of Candida albicans during in vitro evolution. Eukaryotic Cell. 10: 1413-21. PMID 21890821 DOI: 10.1128/Ec.05168-11  0.325
2011 Burrack LS, Applen SE, Berman J. The requirement for the Dam1 complex is dependent upon the number of kinetochore proteins and microtubules. Current Biology : Cb. 21: 889-96. PMID 21549601 DOI: 10.1016/J.Cub.2011.04.002  0.359
2011 Roy B, Burrack LS, Lone MA, Berman J, Sanyal K. CaMtw1, a member of the evolutionarily conserved Mis12 kinetochore protein family, is required for efficient inner kinetochore assembly in the pathogenic yeast Candida albicans. Molecular Microbiology. 80: 14-32. PMID 21276093 DOI: 10.1111/J.1365-2958.2011.07558.X  0.398
2011 Andaluz E, Bellido A, Gómez-Raja J, Selmecki A, Bouchonville K, Calderone R, Berman J, Larriba G. Rad52 function prevents chromosome loss and truncation in Candida albicans Molecular Microbiology. 79: 1462-1482. PMID 21272099 DOI: 10.1111/J.1365-2958.2011.07532.X  0.794
2011 Koren A, Tsai H, Tirosh I, Burrack LS, Barkai N, Berman J. Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase Plos Genetics. 7. DOI: 10.1371/Annotation/2Aba8D24-7A24-4Bbc-91F7-9B9E228Cc84D  0.555
2011 Koren A, Tsai H, Tirosh I, Burrack LS, Barkai N, Berman J. Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase Plos Genetics. 7. DOI: 10.1371/annotation/2aba8d24-7a24-4bbc-91f7-9b9e228cc84d  0.527
2010 Berman J. Evolutionary genomics: When abnormality is beneficial. Nature. 468: 183-4. PMID 21068824 DOI: 10.1038/468183A  0.387
2010 Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. Plos Genetics. 6: e1001068. PMID 20808889 DOI: 10.1371/Journal.Pgen.1001068  0.643
2010 Zacchi LF, Selmecki AM, Berman J, Davis DA. Low dosage of histone H4 leads to growth defects and morphological changes in Candida albicans. Plos One. 5: e10629. PMID 20498713 DOI: 10.1371/Journal.Pone.0010629  0.775
2010 Selmecki A, Forche A, Berman J. Genomic plasticity of the human fungal pathogen Candida albicans. Eukaryotic Cell. 9: 991-1008. PMID 20495058 DOI: 10.1128/Ec.00060-10  0.74
2009 Gladfelter A, Berman J. Dancing genomes: fungal nuclear positioning. Nature Reviews. Microbiology. 7: 875-86. PMID 19898490 DOI: 10.1038/Nrmicro2249  0.367
2009 Berman J. Growth and development: eukaryotes. Current Opinion in Microbiology. 12: 589-91. PMID 19889571 DOI: 10.1016/J.Mib.2009.10.001  0.434
2009 Selmecki AM, Dulmage K, Cowen LE, Anderson JB, Berman J. Acquisition of aneuploidy provides increased fitness during the evolution of antifungal drug resistance. Plos Genetics. 5: e1000705. PMID 19876375 DOI: 10.1371/Journal.Pgen.1000705  0.723
2009 Gale CA, Leonard MD, Finley KR, Christensen L, McClellan M, Abbey D, Kurischko C, Bensen E, Tzafrir I, Kauffman S, Becker J, Berman J. SLA2 mutations cause SWE1-mediated cell cycle phenotypes in Candida albicans and Saccharomyces cerevisiae. Microbiology (Reading, England). 155: 3847-59. PMID 19778960 DOI: 10.1099/Mic.0.033233-0  0.804
2009 Bouchonville K, Forche A, Tang KE, Selmecki A, Berman J. Aneuploid chromosomes are highly unstable during DNA transformation of Candida albicans. Eukaryotic Cell. 8: 1554-66. PMID 19700634 DOI: 10.1128/Ec.00209-09  0.79
2009 Forche A, Steinbach M, Berman J. Efficient and rapid identification of Candida albicans allelic status using SNP-RFLP. Fems Yeast Research. 9: 1061-9. PMID 19622074 DOI: 10.1111/J.1567-1364.2009.00542.X  0.359
2009 Gerami-Nejad M, Dulmage K, Berman J. Additional cassettes for epitope and fluorescent fusion proteins in Candida albicans. Yeast (Chichester, England). 26: 399-406. PMID 19504625 DOI: 10.1002/Yea.1674  0.331
2009 Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, ... ... Berman J, et al. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature. 459: 657-62. PMID 19465905 DOI: 10.1038/Nature08064  0.349
2009 Forche A, Magee PT, Selmecki A, Berman J, May G. Evolution in Candida albicans populations during a single passage through a mouse host. Genetics. 182: 799-811. PMID 19414562 DOI: 10.1534/Genetics.109.103325  0.71
2009 Ketel C, Wang HS, McClellan M, Bouchonville K, Selmecki A, Lahav T, Gerami-Nejad M, Berman J. Neocentromeres form efficiently at multiple possible loci in Candida albicans. Plos Genetics. 5: e1000400. PMID 19266018 DOI: 10.1371/Journal.Pgen.1000400  0.803
2008 Joglekar AP, Bouck D, Finley K, Liu X, Wan Y, Berman J, He X, Salmon ED, Bloom KS. Molecular architecture of the kinetochore-microtubule attachment site is conserved between point and regional centromeres. The Journal of Cell Biology. 181: 587-94. PMID 18474626 DOI: 10.1083/Jcb.200803027  0.358
2008 Forche A, Alby K, Schaefer D, Johnson AD, Berman J, Bennett RJ. The parasexual cycle in Candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains. Plos Biology. 6: e110. PMID 18462019 DOI: 10.1371/Journal.Pbio.0060110  0.658
2008 Selmecki A, Gerami-Nejad M, Paulson C, Forche A, Berman J. An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1. Molecular Microbiology. 68: 624-41. PMID 18363649 DOI: 10.1111/J.1365-2958.2008.06176.X  0.717
2008 Finley KR, Bouchonville KJ, Quick A, Berman J. Dynein-dependent nuclear dynamics affect morphogenesis in Candida albicans by means of the Bub2p spindle checkpoint. Journal of Cell Science. 121: 466-76. PMID 18211963 DOI: 10.1242/Jcs.015172  0.776
2008 Legrand M, Forche A, Selmecki A, Chan C, Kirkpatrick DT, Berman J. Haplotype mapping of a diploid non-meiotic organism using existing and induced aneuploidies. Plos Genetics. 4: e1. PMID 18179283 DOI: 10.1371/Journal.Pgen.0040001  0.737
2007 Coste A, Selmecki A, Forche A, Diogo D, Bougnoux ME, d'Enfert C, Berman J, Sanglard D. Genotypic evolution of azole resistance mechanisms in sequential Candida albicans isolates. Eukaryotic Cell. 6: 1889-904. PMID 17693596 DOI: 10.1128/Ec.00151-07  0.721
2007 Tirosh I, Berman J, Barkai N. The pattern and evolution of yeast promoter bendability. Trends in Genetics : Tig. 23: 318-21. PMID 17418911 DOI: 10.1016/J.Tig.2007.03.015  0.309
2006 Berman J. Morphogenesis and cell cycle progression in Candida albicans. Current Opinion in Microbiology. 9: 595-601. PMID 17055773 DOI: 10.1016/J.Mib.2006.10.007  0.366
2006 Oberholzer U, Nantel A, Berman J, Whiteway M. Transcript profiles of Candida albicans cortical actin patch mutants reflect their cellular defects: contribution of the Hog1p and Mkc1p signaling pathways. Eukaryotic Cell. 5: 1252-65. PMID 16896210 DOI: 10.1128/Ec.00385-05  0.37
2006 Selmecki A, Forche A, Berman J. Aneuploidy and isochromosome formation in drug-resistant Candida albicans. Science (New York, N.Y.). 313: 367-70. PMID 16857942 DOI: 10.1126/Science.1128242  0.72
2006 Coste A, Turner V, Ischer F, Morschhäuser J, Forche A, Selmecki A, Berman J, Bille J, Sanglard D. A mutation in Tac1p, a transcription factor regulating CDR1 and CDR2, is coupled with loss of heterozygosity at chromosome 5 to mediate antifungal resistance in Candida albicans. Genetics. 172: 2139-56. PMID 16452151 DOI: 10.1534/Genetics.105.054767  0.716
2005 Ihmels J, Bergmann S, Berman J, Barkai N. Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. Plos Genetics. 1: e39. PMID 16470937 DOI: 10.1371/Journal.Pgen.0010039  0.313
2005 Finley KR, Berman J. Microtubules in Candida albicans hyphae drive nuclear dynamics and connect cell cycle progression to morphogenesis. Eukaryotic Cell. 4: 1697-711. PMID 16215177 DOI: 10.1128/Ec.4.10.1697-1711.2005  0.795
2005 Braun BR, van Het Hoog M, d'Enfert C, Martchenko M, Dungan J, Kuo A, Inglis DO, Uhl MA, Hogues H, Berriman M, Lorenz M, Levitin A, Oberholzer U, Bachewich C, Harcus D, ... ... Berman J, et al. A human-curated annotation of the Candida albicans genome. Plos Genetics. 1: 36-57. PMID 16103911 DOI: 10.1371/Journal.Pgen.0010001  0.335
2005 Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, Barkai N. Rewiring of the yeast transcriptional network through the evolution of motif usage. Science (New York, N.Y.). 309: 938-40. PMID 16081737 DOI: 10.1126/Science.1113833  0.327
2005 Crampin H, Finley K, Gerami-Nejad M, Court H, Gale C, Berman J, Sudbery P. Candida albicans hyphae have a Spitzenkörper that is distinct from the polarisome found in yeast and pseudohyphae. Journal of Cell Science. 118: 2935-47. PMID 15976451 DOI: 10.1242/Jcs.02414  0.796
2005 Bensen ES, Clemente-Blanco A, Finley KR, Correa-Bordes J, Berman J. The mitotic cyclins Clb2p and Clb4p affect morphogenesis in Candida albicans. Molecular Biology of the Cell. 16: 3387-400. PMID 15888543 DOI: 10.1091/Mbc.E04-12-1081  0.799
2005 Selmecki A, Bergmann S, Berman J. Comparative genome hybridization reveals widespread aneuploidy in Candida albicans laboratory strains. Molecular Microbiology. 55: 1553-65. PMID 15720560 DOI: 10.1111/J.1365-2958.2005.04492.X  0.742
2004 Sudbery P, Gow N, Berman J. The distinct morphogenic states of Candida albicans. Trends in Microbiology. 12: 317-24. PMID 15223059 DOI: 10.1016/J.Tim.2004.05.008  0.352
2004 Gerami-Nejad M, Hausauer D, McClellan M, Berman J, Gale C. Cassettes for the PCR-mediated construction of regulatable alleles in Candida albicans. Yeast (Chichester, England). 21: 429-36. PMID 15116343 DOI: 10.1002/Yea.1080  0.383
2003 Tseng-Rogenski SSI, Chong JL, Thomas CB, Enomoto S, Berman J, Chang TH. Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes Nucleic Acids Research. 31: 4995-5002. PMID 12930949 DOI: 10.1093/Nar/Gkg712  0.361
2003 Dahlseid JN, Lew-Smith J, Lelivelt MJ, Enomoto S, Ford A, Desruisseaux M, McClellan M, Lue N, Culbertson MR, Berman J. mRNAs encoding telomerase components and regulators are controlled by UPF genes in Saccharomyces cerevisiae Eukaryotic Cell. 2: 134-142. PMID 12582130 DOI: 10.1128/Ec.2.1.134-142.2003  0.37
2002 Berman J, Sudbery PE. Candida Albicans: a molecular revolution built on lessons from budding yeast. Nature Reviews. Genetics. 3: 918-30. PMID 12459722 DOI: 10.1038/Nrg948  0.34
2002 Bensen ES, Filler SG, Berman J. A forkhead transcription factor is important for true hyphal as well as yeast morphogenesis in Candida albicans. Eukaryotic Cell. 1: 787-98. PMID 12455696 DOI: 10.1128/Ec.1.5.787-798.2002  0.408
2002 Enomoto S, Glowczewski L, Berman J. MEC3, MEC1, and DDC2 are essential components of a telomere checkpoint pathway required for cell cycle arrest during senescence in Saccharomyces cerevisiae. Molecular Biology of the Cell. 13: 2626-38. PMID 12181334 DOI: 10.1091/Mbc.02-02-0012  0.376
2002 Gale C, Gerami-Nejad M, McClellan M, Vandoninck S, Longtine MS, Berman J. Candida albicans Int1p interacts with the septin ring in yeast and hyphal cells. Molecular Biology of the Cell. 12: 3538-49. PMID 11694587 DOI: 10.1091/Mbc.12.11.3538  0.398
2002 Gerami-Nejad M, Berman J, Gale CA. Cassettes for PCR-mediated construction of green, yellow, and cyan fluorescent protein fusions in Candida albicans. Yeast (Chichester, England). 18: 859-64. PMID 11427968 DOI: 10.1002/Yea.738  0.33
2001 Asleson CM, Bensen ES, Gale CA, Melms AS, Kurischko C, Berman J. Candida albicans INT1-induced filamentation in Saccharomyces cerevisiae depends on Sla2p. Molecular and Cellular Biology. 21: 1272-84. PMID 11158313 DOI: 10.1128/Mcb.21.4.1272-1284.2001  0.352
2000 Asleson CM, Asleson JC, Malandra E, Johnston S, Berman J. Filamentous growth of Saccharomyces cerevisiae is regulated by manganese. Fungal Genetics and Biology. 30: 155-162. PMID 11017771 DOI: 10.1006/Fgbi.2000.1214  0.323
1998 Lew JE, Enomoto S, Berman J. Telomere length regulation and telomeric chromatin require the nonsense-mediated mRNA decay pathway. Molecular and Cellular Biology. 18: 6121-30. PMID 9742129 DOI: 10.1128/Mcb.18.10.6121  0.374
1998 Qian Z, Huang H, Hong JY, Burck CL, Johnston SD, Berman J, Carol A, Liebman SW. Yeast Ty1 retrotransposition is stimulated by a synergistic interaction between mutations in chromatin assembly factor I and histone regulatory proteins. Molecular and Cellular Biology. 18: 4783-92. PMID 9671488 DOI: 10.1128/Mcb.18.8.4783  0.334
1998 Schnell JR, Berman J, Bloomfield VA. Insertion of telomere repeat sequence decreases plasmid DNA condensation by cobalt (III) hexaammine. Biophysical Journal. 74: 1484-91. PMID 9512044 DOI: 10.1016/S0006-3495(98)77860-9  0.346
1998 Gale CA, Bendel CM, McClellan M, Hauser M, Becker JM, Berman J, Hostetter MK. Linkage of adhesion, filamentous growth, and virulence in Candida albicans to a single gene, INT1 Science. 279: 1355-1358. PMID 9478896 DOI: 10.1126/Science.279.5355.1355  0.365
1998 Enomoto S, Berman J. Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci. Genes & Development. 12: 219-32. PMID 9436982 DOI: 10.1101/Gad.12.2.219  0.367
1997 Enomoto S, McCune-Zierath PD, Gerami-Nejad M, Sanders MA, Berman J. RLF2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatm function in vivo Genes and Development. 11: 358-370. PMID 9030688 DOI: 10.1101/Gad.11.3.358  0.412
1995 Enomoto S, Longtine MS, Berman J. TEL+CEN antagonism on plasmids involves telomere repeat sequences tracts and gene products that interact with chromosomal telomeres. Chromosoma. 103: 237-50. PMID 7988285 DOI: 10.1007/Bf00352248  0.421
1995 Konkel LM, Enomoto S, Chamberlain EM, McCune-Zierath P, Iyadurai SJ, Berman J. A class of single-stranded telomeric DNA-binding proteins required for Rap1p localization in yeast nuclei. Proceedings of the National Academy of Sciences of the United States of America. 92: 5558-62. PMID 7777547 DOI: 10.1073/Pnas.92.12.5558  0.778
1994 Petracek ME, Konkel LM, Kable ML, Berman J. A Chlamydomonas protein that binds single-stranded G-strand telomere DNA. The Embo Journal. 13: 3648-58. PMID 8062839 DOI: 10.1002/J.1460-2075.1994.Tb06672.X  0.753
1992 Petracek ME, Berman J. Chlamydomonas reinhardtii telomere repeats form unstable structures involving guanine-guanine base pairs. Nucleic Acids Research. 20: 89-95. PMID 1738609 DOI: 10.1093/Nar/20.1.89  0.315
1992 Longtine MS, Enomoto S, Finstad SL, Berman J. Yeast telomere repeat sequence (TRS) improves circular plasmid segregation, and TRS plasmid segregation involves the RAP1 gene product. Molecular and Cellular Biology. 12: 1997-2009. PMID 1569937 DOI: 10.1128/Mcb.12.5.1997  0.379
1990 Petracek ME, Lefebvre PA, Silflow CD, Berman J. Chlamydomonas telomere sequences are A+T-rich but contain three consecutive G-C base pairs. Proceedings of the National Academy of Sciences of the United States of America. 87: 8222-6. PMID 2236035 DOI: 10.1073/Pnas.87.21.8222  0.346
1987 Berman J, Eisenberg S, Tye BK. [32] An agarose gel electrophoresis assay for the detection of DNA-binding activities in yeast cell extracts Methods in Enzymology. 155: 528-537. PMID 3323822 DOI: 10.1016/0076-6879(87)55034-0  0.602
1986 Berman J, Tachibana CY, Tye BK. Identification of a telomere-binding activity from yeast Proceedings of the National Academy of Sciences of the United States of America. 83: 3713-3717. PMID 3520552 DOI: 10.1073/Pnas.83.11.3713  0.611
1985 Berman J, Zilberstein A, Salomon D, Zamir A. Expression of a nitrogen-fixation gene encoding a nitrogenase subunit in yeast. Gene. 35: 1-9. PMID 3896931 DOI: 10.1016/0378-1119(85)90151-9  0.338
1983 Bitoun R, Berman J, Zilberstein A, Holland D, Cohen JB, Givol D, Zamir A. Promoter mutations that allow nifA-independent expression of the nitrogen fixation nifHDKY operon. Proceedings of the National Academy of Sciences of the United States of America. 80: 5812-6. PMID 6310592 DOI: 10.1073/Pnas.80.19.5812  0.321
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