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Alexander D. Johnson - Publications

Microbiology & Immunology University of California, San Francisco, San Francisco, CA 
Molecular Biology of Transcription Circuit Evolution, Candida albicans pathogenesis

181 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lohse MB, Ziv N, Johnson AD. Variation in transcription regulator expression underlies differences in white-opaque switching between the SC5314 reference strain and the majority of Candida albicans clinical isolates. Genetics. 225. PMID 37811798 DOI: 10.1093/genetics/iyad162  0.716
2023 Lohse MB, Laurie MT, Levan S, Ziv N, Ennis CL, Nobile CJ, DeRisi J, Johnson AD. Broad susceptibility of strains to 8-hydroxyquinolines and mechanisms of resistance. Mbio. e0137623. PMID 37493629 DOI: 10.1128/mbio.01376-23  0.663
2023 Fowler KR, Leon F, Johnson AD. Ancient transcriptional regulators can easily evolve new pair-wise cooperativity. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302445120. PMID 37399378 DOI: 10.1073/pnas.2302445120  0.364
2023 Del Frate F, Garber ME, Johnson AD. Evolution of a new form of haploid-specific gene regulation appearing in a limited clade of ascomycete yeast species. Genetics. 224. PMID 37119800 DOI: 10.1093/genetics/iyad053  0.352
2023 Lohse MB, Laurie MT, Levan S, Ziv N, Ennis CL, Nobile CJ, DeRisi J, Johnson AD. Broad sensitivity of strains to quinolones and mechanisms of resistance. Biorxiv : the Preprint Server For Biology. PMID 36824717 DOI: 10.1101/2023.02.16.528905  0.663
2023 Brenes LR, Johnson AD, Lohse MB. Farnesol and phosphorylation of the transcriptional regulator Efg1 affect Candida albicans white-opaque switching rates. Plos One. 18: e0280233. PMID 36662710 DOI: 10.1371/journal.pone.0280233  0.722
2022 Ziv N, Brenes LR, Johnson A. Multiple molecular events underlie stochastic switching between 2 heritable cell states in fungi. Plos Biology. 20: e3001657. PMID 35594297 DOI: 10.1371/journal.pbio.3001657  0.323
2021 Singh-Babak SD, Babak T, Fraser HB, Johnson AD. Lineage-specific selection and the evolution of virulence in the clade. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723044 DOI: 10.1073/pnas.2016818118  0.802
2020 Lohse MB, Ennis CL, Hartooni N, Johnson AD, Nobile CJ. A Screen for Small Molecules to Target Biofilms. Journal of Fungi (Basel, Switzerland). 7. PMID 33375490 DOI: 10.3390/jof7010009  0.669
2020 Lohse MB, Brenes LR, Ziv N, Winter MB, Craik CS, Johnson AD. An Opaque Cell-Specific Expression Program of Secreted Proteases and Transporters Allows Cell-Type Cooperation in . Genetics. PMID 32839241 DOI: 10.1534/Genetics.120.303613  0.745
2020 Lohse MB, Gulati M, Craik CS, Johnson AD, Nobile CJ. Combination of Antifungal Drugs and Protease Inhibitors Prevent Biofilm Formation and Disrupt Mature Biofilms. Frontiers in Microbiology. 11: 1027. PMID 32523574 DOI: 10.3389/Fmicb.2020.01027  0.682
2020 Brenes LR, Lohse MB, Hartooni N, Johnson AD. A Set of Diverse Genes Influence the Frequency of White-Opaque Switching in . G3 (Bethesda, Md.). PMID 32487674 DOI: 10.1534/G3.120.401249  0.766
2020 Nobile CJ, Ennis CL, Hartooni N, Johnson AD, Lohse MB. A Selective Serotonin Reuptake Inhibitor, a Proton Pump Inhibitor, and Two Calcium Channel Blockers Inhibit Biofilms. Microorganisms. 8. PMID 32443498 DOI: 10.3390/microorganisms8050756  0.659
2020 Mancera E, Frazer C, Porman AM, Ruiz-Castro S, Johnson AD, Bennett RJ. Corrigendum: Genetic Modification of Closely Related Candida Species. Frontiers in Microbiology. 11: 713. PMID 32351495 DOI: 10.3389/Fmicb.2020.00713  0.525
2020 Britton CS, Sorrells TR, Johnson AD. Protein-coding changes preceded cis-regulatory gains in a newly evolved transcription circuit. Science (New York, N.Y.). 367: 96-100. PMID 31896718 DOI: 10.1126/Science.Aax5217  0.395
2020 Lohse MB, Gulati M, Craik CS, Johnson AD, Nobile CJ. Combination of Antifungal Drugs and Protease Inhibitors Prevent Candida albicans Biofilm Formation and Disrupt Mature Biofilms Frontiers in Microbiology. 11. DOI: 10.3389/fmicb.2020.01027  0.66
2019 Dalal CK, Zuleta IA, Lohse MB, Zordan RE, El-Samad H, Johnson AD. A population shift between two heritable cell types of the pathogen is based both on switching and selective proliferation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31822605 DOI: 10.1073/Pnas.1908986116  0.802
2019 Takagi J, Singh-Babak SD, Lohse MB, Dalal CK, Johnson AD. Candida albicans white and opaque cells exhibit distinct spectra of organ colonization in mouse models of infection. Plos One. 14: e0218037. PMID 31170229 DOI: 10.1371/Journal.Pone.0218037  0.795
2019 Mancera E, Frazer C, Porman AM, Ruiz-Castro S, Johnson AD, Bennett RJ. Genetic Modification of Closely Related Species. Frontiers in Microbiology. 10: 357. PMID 30941104 DOI: 10.3389/Fmicb.2019.00357  0.582
2018 Sorrells TR, Johnson AN, Howard CJ, Britton CS, Fowler KR, Feigerle JT, Weil PA, Johnson AD. Intrinsic cooperativity potentiates parallel cis-regulatory evolution. Elife. 7. PMID 30198843 DOI: 10.7554/Elife.37563  0.444
2017 Johnson AD. The rewiring of transcription circuits in evolution. Current Opinion in Genetics & Development. 47: 121-127. PMID 29120735 DOI: 10.1016/J.Gde.2017.09.004  0.448
2017 Lohse MB, Gulati M, Johnson AD, Nobile CJ. Development and regulation of single- and multi-species Candida albicans biofilms. Nature Reviews. Microbiology. PMID 29062072 DOI: 10.1038/Nrmicro.2017.107  0.717
2017 Dalal CK, Johnson AD. How transcription circuits explore alternative architectures while maintaining overall circuit output. Genes & Development. 31: 1397-1405. PMID 28860157 DOI: 10.1101/Gad.303362.117  0.434
2017 Craik VB, Johnson AD, Lohse MB. Sensitivity of White and Opaque Candida albicans to Antifungal Drugs. Antimicrobial Agents and Chemotherapy. PMID 28507115 DOI: 10.1128/Aac.00166-17  0.706
2017 Nocedal I, Mancera E, Johnson AD. Gene regulatory network plasticity predates a switch in function of a conserved transcription regulator. Elife. 6. PMID 28327289 DOI: 10.7554/Elife.23250  0.413
2017 Lohse MB, Gulati M, Arevalo AV, Fishburn A, Johnson AD, Nobile CJ. Assessment and optimizations of Candida albicans in vitro biofilm assays. Antimicrobial Agents and Chemotherapy. PMID 28289028 DOI: 10.1128/Aac.02749-16  0.698
2017 Nocedal I, Mancera E, Johnson AD. Author response: Gene regulatory network plasticity predates a switch in function of a conserved transcription regulator Elife. DOI: 10.7554/Elife.23250.025  0.405
2016 Ene IV, Lohse MB, Vladu AV, Morschhäuser J, Johnson AD, Bennett RJ. Phenotypic Profiling Reveals that Candida albicans Opaque Cells Represent a Metabolically Specialized Cell State Compared to Default White Cells. Mbio. 7. PMID 27879329 DOI: 10.1128/Mbio.01269-16  0.781
2016 Winter MB, Salcedo EC, Lohse MB, Hartooni N, Gulati M, Sanchez H, Takagi J, Hube B, Andes DR, Johnson AD, Craik CS, Nobile CJ. Global Identification of Biofilm-Specific Proteolysis in Candida albicans. Mbio. 7. PMID 27624133 DOI: 10.1128/Mbio.01514-16  0.717
2016 Dalal CK, Zuleta IA, Mitchell KF, Andes DR, El-Samad H, Johnson AD. Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression. Elife. 5. PMID 27614020 DOI: 10.7554/Elife.18981  0.451
2016 Hanson-Smith V, Johnson A. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories. Plos Computational Biology. 12: e1004976. PMID 27472806 DOI: 10.1371/Journal.Pcbi.1004976  0.749
2016 Lohse MB, Ene IV, Craik VB, Hernday AD, Mancera E, Morschhäuser J, Bennett RJ, Johnson AD. Systematic Genetic Screen for Transcriptional Regulators of the Candida albicans White-Opaque Switch. Genetics. PMID 27280690 DOI: 10.1534/Genetics.116.190645  0.819
2016 Pattaro C, Teumer A, Gorski M, Chu AY, Li M, Mijatovic V, Garnaas M, Tin A, Sorice R, Li Y, Taliun D, Olden M, Foster M, Yang Q, Chen MH, ... ... Johnson AD, et al. Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function. Nature Communications. 7: 10023. PMID 26831199 DOI: 10.1038/Ncomms10023  0.36
2016 Hernday AD, Lohse MB, Nobile CJ, Noiman L, Laksana CN, Johnson AD. Ssn6 Defines a New Level of Regulation of White-Opaque Switching in Candida albicans and Is Required For the Stochasticity of the Switch. Mbio. 7. PMID 26814177 DOI: 10.1128/Mbio.01565-15  0.787
2016 Lohse MB, Johnson AD. Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching. G3 (Bethesda, Md.). PMID 26772749 DOI: 10.1534/G3.115.024885  0.768
2016 Dalal CK, Zuleta IA, Mitchell KF, Andes DR, El-Samad H, Johnson AD. Author response: Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression Elife. DOI: 10.7554/Elife.18981.032  0.353
2015 Nocedal I, Johnson AD. How Transcription Networks Evolve and Produce Biological Novelty. Cold Spring Harbor Symposia On Quantitative Biology. PMID 26657905 DOI: 10.1101/Sqb.2015.80.027557  0.523
2015 Eicher JD, Xue L, Ben-Shlomo Y, Beswick AD, Johnson AD. Replication and hematological characterization of human platelet reactivity genetic associations in men from the Caerphilly Prospective Study (CaPS). Journal of Thrombosis and Thrombolysis. PMID 26519038 DOI: 10.1007/s11239-015-1290-7  0.322
2015 Peters MJ, Joehanes R, Pilling LC, Schurmann C, Conneely KN, Powell J, Reinmaa E, Sutphin GL, Zhernakova A, Schramm K, Wilson YA, Kobes S, Tukiainen T, Ramos YF, ... ... Johnson AD, et al. The transcriptional landscape of age in human peripheral blood. Nature Communications. 6: 8570. PMID 26490707 DOI: 10.1038/Ncomms9570  0.365
2015 Nobile CJ, Johnson AD. Candida albicans Biofilms and Human Disease. Annual Review of Microbiology. 69: 71-92. PMID 26488273 DOI: 10.1146/Annurev-Micro-091014-104330  0.483
2015 Day FR, Ruth KS, Thompson DJ, Lunetta KL, Pervjakova N, Chasman DI, Stolk L, Finucane HK, Sulem P, Bulik-Sullivan B, Esko T, Johnson AD, Elks CE, Franceschini N, He C, et al. Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair. Nature Genetics. PMID 26414677 DOI: 10.1097/01.Ogx.0000473766.71624.99  0.376
2015 Liu X, White S, Peng B, Johnson AD, Brody JA, Li AH, Huang Z, Carroll A, Wei P, Gibbs R, Klein RJ, Boerwinkle E. WGSA: an annotation pipeline for human genome sequencing studies. Journal of Medical Genetics. PMID 26395054 DOI: 10.1136/Jmedgenet-2015-103423  0.406
2015 Eicher JD, Wakabayashi Y, Vitseva O, Esa N, Yang Y, Zhu J, Freedman JE, McManus DD, Johnson AD. Characterization of the platelet transcriptome by RNA sequencing in patients with acute myocardial infarction. Platelets. 1-10. PMID 26367242 DOI: 10.3109/09537104.2015.1083543  0.349
2015 Du H, Guan G, Li X, Gulati M, Tao L, Cao C, Johnson AD, Nobile CJ, Huang G. N-Acetylglucosamine-Induced Cell Death in Candida albicans and Its Implications for Adaptive Mechanisms of Nutrient Sensing in Yeasts. Mbio. 6. PMID 26350972 DOI: 10.1128/Mbio.01376-15  0.513
2015 Eleftheriou M, Pascual AJ, Wheldon LM, Perry C, Abakir A, Arora A, Johnson AD, Auer DT, Ellis IO, Madhusudan S, Ruzov A. 5-Carboxylcytosine levels are elevated in human breast cancers and gliomas. Clinical Epigenetics. 7: 88. PMID 26300993 DOI: 10.1186/s13148-015-0117-x  0.334
2015 Brænne I, Civelek M, Vilne B, Di Narzo A, Johnson AD, Zhao Y, Reiz B, Codoni V, Webb TR, Foroughi Asl H, Hamby SE, Zeng L, Trégouët DA, Hao K, Topol EJ, et al. Prediction of Causal Candidate Genes in Coronary Artery Disease Loci. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 26293461 DOI: 10.1161/Atvbaha.115.306108  0.346
2015 Johnson AD, Alberio R. Primordial germ cells: the first cell lineage or the last cells standing? Development (Cambridge, England). 142: 2730-9. PMID 26286941 DOI: 10.1242/dev.113993  0.409
2015 Sorrells TR, Booth LN, Tuch BB, Johnson AD. Intersecting transcription networks constrain gene regulatory evolution. Nature. 523: 361-5. PMID 26153861 DOI: 10.1038/Nature14613  0.816
2015 Handelman SK, Seweryn M, Smith RM, Hartmann K, Wang D, Pietrzak M, Johnson AD, Kloczkowski A, Sadee W. Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs). Bmc Genomics. 16: S8. PMID 26111110 DOI: 10.1186/1471-2164-16-S8-S8  0.379
2015 Huan T, Meng Q, Saleh MA, Norlander AE, Joehanes R, Zhu J, Chen BH, Zhang B, Johnson AD, Ying S, Courchesne P, Raghavachari N, Wang R, Liu P, O'Donnell CJ, et al. Integrative network analysis reveals molecular mechanisms of blood pressure regulation. Molecular Systems Biology. 11: 799. PMID 26043448  0.433
2015 Moxey M, Johnson A, El-Zubir O, Cartron M, Dinachali SS, Hunter CN, Saifullah MS, Chong KS, Leggett GJ. Fabrication of Self-Cleaning, Reusable Titania Templates for Nanometer and Micrometer Scale Protein Patterning. Acs Nano. 9: 6262-70. PMID 26042335 DOI: 10.1021/acsnano.5b01636  0.319
2015 Taylor PN, Porcu E, Chew S, Campbell PJ, Traglia M, Brown SJ, Mullin BH, Shihab HA, Min J, Walter K, Memari Y, Huang J, Barnes MR, Beilby JP, Charoen P, ... ... Johnson AD, et al. Erratum: Whole-genome sequence-based analysis of thyroid function. Nature Communications. 6: 7172. PMID 25989729 DOI: 10.1038/Ncomms8172  0.33
2015 Sorrells TR, Johnson AD. Making sense of transcription networks. Cell. 161: 714-23. PMID 25957680 DOI: 10.1016/J.Cell.2015.04.014  0.489
2015 O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome. Proceedings of the National Academy of Sciences of the United States of America. 112: 7478-83. PMID 25944934 DOI: 10.1073/Pnas.1507082112  0.629
2015 Rodriguez S, Gaunt TR, Guo Y, Zheng J, Barnes MR, Tang W, Danish F, Johnson A, Castillo BA, Li YR, Hakonarson H, Buxbaum SG, Palmer T, Tsai MY, Lange LA, et al. Lipids, obesity and gallbladder disease in women: insights from genetic studies using the cardiovascular gene-centric 50K SNP array. European Journal of Human Genetics : Ejhg. PMID 25920552 DOI: 10.1038/Ejhg.2015.63  0.317
2015 Huan T, Meng Q, Saleh MA, Norlander AE, Joehanes R, Zhu J, Chen BH, Zhang B, Johnson AD, Ying S, Courchesne P, Raghavachari N, Wang R, Liu P, et al. Integrative network analysis reveals molecular mechanisms of blood pressure regulation. Molecular Systems Biology. 11: 799. PMID 25882670 DOI: 10.15252/Msb.20145399  0.433
2015 Fox EP, Bui CK, Nett JE, Hartooni N, Mui MC, Andes DR, Nobile CJ, Johnson AD. An expanded regulatory network temporally controls Candida albicans biofilm formation. Molecular Microbiology. 96: 1226-39. PMID 25784162 DOI: 10.1111/Mmi.13002  0.357
2015 Mancera E, Porman AM, Cuomo CA, Bennett RJ, Johnson AD. Finding a Missing Gene: EFG1 Regulates Morphogenesis in Candida tropicalis. G3 (Bethesda, Md.). 5: 849-56. PMID 25758825 DOI: 10.1534/G3.115.017566  0.661
2015 O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. Correction: Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome (Proceedings of the National Academy of Sciences United State of America (2015) 112, (7478-7483) DOI: 10.1073/pnas.1507082112) Proceedings of the National Academy of Sciences of the United States of America. 112: E3152. DOI: 10.1073/pnas.1509071112  0.302
2014 Kavanaugh NL, Zhang AQ, Nobile CJ, Johnson AD, Ribbeck K. Mucins suppress virulence traits of Candida albicans. Mbio. 5: e01911. PMID 25389175 DOI: 10.1128/Mbio.01911-14  0.359
2014 Howard CJ, Hanson-Smith V, Kennedy KJ, Miller CJ, Lou HJ, Johnson AD, Turk BE, Holt LJ. Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity. Elife. 3. PMID 25310241 DOI: 10.7554/Elife.04126  0.734
2014 Fox EP, Cowley ES, Nobile CJ, Hartooni N, Newman DK, Johnson AD. Anaerobic bacteria grow within Candida albicans biofilms and induce biofilm formation in suspension cultures. Current Biology : Cb. 24: 2411-6. PMID 25308076 DOI: 10.1016/J.Cub.2014.08.057  0.377
2014 Lohse MB, Rosenberg OS, Cox JS, Stroud RM, Finer-Moore JS, Johnson AD. Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi. Proceedings of the National Academy of Sciences of the United States of America. 111: 10404-10. PMID 24994900 DOI: 10.1073/Pnas.1410110111  0.731
2014 Nobile CJ, Fox EP, Hartooni N, Mitchell KF, Hnisz D, Andes DR, Kuchler K, Johnson AD. A histone deacetylase complex mediates biofilm dispersal and drug resistance in Candida albicans. Mbio. 5: e01201-14. PMID 24917598 DOI: 10.1128/Mbio.01201-14  0.314
2014 Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD. How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes. Genes & Development. 28: 1272-7. PMID 24874988 DOI: 10.1101/Gad.242271.114  0.823
2013 Pérez JC, Johnson AD. Regulatory circuits that enable proliferation of the fungus Candida albicans in a mammalian host. Plos Pathogens. 9: e1003780. PMID 24385896 DOI: 10.1371/Journal.Ppat.1003780  0.333
2013 Baker CR, Hanson-Smith V, Johnson AD. Following gene duplication, paralog interference constrains transcriptional circuit evolution. Science (New York, N.Y.). 342: 104-8. PMID 24092741 DOI: 10.1126/Science.1240810  0.788
2013 Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD. Structure of the transcriptional network controlling white-opaque switching in Candida albicans. Molecular Microbiology. 90: 22-35. PMID 23855748 DOI: 10.1111/Mmi.12329  0.769
2013 Lin CH, Kabrawala S, Fox EP, Nobile CJ, Johnson AD, Bennett RJ. Genetic control of conventional and pheromone-stimulated biofilm formation in Candida albicans. Plos Pathogens. 9: e1003305. PMID 23637598 DOI: 10.1371/Journal.Ppat.1003305  0.629
2013 Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD. Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. Proceedings of the National Academy of Sciences of the United States of America. 110: 7660-5. PMID 23610392 DOI: 10.1073/Pnas.1221734110  0.834
2013 Xie J, Tao L, Nobile CJ, Tong Y, Guan G, Sun Y, Cao C, Hernday AD, Johnson AD, Zhang L, Bai FY, Huang G. White-opaque switching in natural MTLa/α isolates of Candida albicans: evolutionary implications for roles in host adaptation, pathogenesis, and sex. Plos Biology. 11: e1001525. PMID 23555196 DOI: 10.1371/Journal.Pbio.1001525  0.429
2013 Pérez JC, Kumamoto CA, Johnson AD. Candida albicans commensalism and pathogenicity are intertwined traits directed by a tightly knit transcriptional regulatory circuit. Plos Biology. 11: e1001510. PMID 23526879 DOI: 10.1371/Journal.Pbio.1001510  0.458
2013 Si H, Hernday AD, Hirakawa MP, Johnson AD, Bennett RJ. Candida albicans white and opaque cells undergo distinct programs of filamentous growth. Plos Pathogens. 9: e1003210. PMID 23505370 DOI: 10.1371/Journal.Ppat.1003210  0.625
2012 Baker CR, Booth LN, Sorrells TR, Johnson AD. Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification. Cell. 151: 80-95. PMID 23021217 DOI: 10.1016/J.Cell.2012.08.018  0.802
2012 Nobile CJ, Fox EP, Nett JE, Sorrells TR, Mitrovich QM, Hernday AD, Tuch BB, Andes DR, Johnson AD. A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell. 148: 126-38. PMID 22265407 DOI: 10.1016/J.Cell.2011.10.048  0.717
2012 Cain CW, Lohse MB, Homann OR, Sil A, Johnson AD. A conserved transcriptional regulator governs fungal morphology in widely diverged species. Genetics. 190: 511-21. PMID 22095082 DOI: 10.1534/Genetics.111.134080  0.808
2012 Nobile CJ, Fox EP, Nett JE, Mitrovich QM, Hernday AD, Tuch BB, Andes DR, Johnson AD. The transcriptional network controlling biofilm development in Candida albicans F1000research. 3. DOI: 10.7490/F1000Research.1194.1  0.666
2011 Baker CR, Tuch BB, Johnson AD. Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proceedings of the National Academy of Sciences of the United States of America. 108: 7493-8. PMID 21498688 DOI: 10.1073/Pnas.1019177108  0.721
2010 Booth LN, Tuch BB, Johnson AD. Intercalation of a new tier of transcription regulation into an ancient circuit. Nature. 468: 959-63. PMID 21164485 DOI: 10.1038/Nature09560  0.828
2010 Mitrovich QM, Tuch BB, De La Vega FM, Guthrie C, Johnson AD. Evolution of yeast noncoding RNAs reveals an alternative mechanism for widespread intron loss Science. 330: 838-841. PMID 21051641 DOI: 10.1126/Science.1194554  0.671
2010 Hernday AD, Noble SM, Mitrovich QM, Johnson AD. Genetics and molecular biology in Candida albicans. Methods in Enzymology. 470: 737-58. PMID 20946834 DOI: 10.1016/S0076-6879(10)70031-8  0.373
2010 Li H, Johnson AD. Evolution of transcription networks--lessons from yeasts. Current Biology : Cb. 20: R746-53. PMID 20833319 DOI: 10.1016/J.Cub.2010.06.056  0.442
2010 Tuch BB, Mitrovich QM, Homann OR, Hernday AD, Monighetti CK, De La Vega FM, Johnson AD. The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation. Plos Genetics. 6: e1001070. PMID 20808890 DOI: 10.1371/Journal.Pgen.1001070  0.732
2010 Lohse MB, Johnson AD. Temporal anatomy of an epigenetic switch in cell programming: the white-opaque transition of C. albicans. Molecular Microbiology. 78: 331-43. PMID 20735781 DOI: 10.1111/J.1365-2958.2010.07331.X  0.766
2010 Lohse MB, Zordan RE, Cain CW, Johnson AD. Distinct class of DNA-binding domains is exemplified by a master regulator of phenotypic switching in Candida albicans. Proceedings of the National Academy of Sciences of the United States of America. 107: 14105-10. PMID 20660774 DOI: 10.1073/Pnas.1005911107  0.795
2010 Noble SM, French S, Kohn LA, Chen V, Johnson AD. Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity. Nature Genetics. 42: 590-8. PMID 20543849 DOI: 10.1038/Ng.605  0.41
2009 Homann OR, Dea J, Noble SM, Johnson AD. A phenotypic profile of the Candida albicans regulatory network. Plos Genetics. 5: e1000783. PMID 20041210 DOI: 10.1371/Journal.Pgen.1000783  0.454
2009 Lohse MB, Johnson AD. White-opaque switching in Candida albicans. Current Opinion in Microbiology. 12: 650-4. PMID 19853498 DOI: 10.1016/J.Mib.2009.09.010  0.749
2009 Elson SL, Noble SM, Solis NV, Filler SG, Johnson AD. An RNA transport system in Candida albicans regulates hyphal morphology and invasive growth. Plos Genetics. 5: e1000664. PMID 19779551 DOI: 10.1371/Journal.Pgen.1000664  0.726
2009 Holt LJ, Tuch BB, Villén J, Johnson AD, Gygi SP, Morgan DO. Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science (New York, N.Y.). 325: 1682-6. PMID 19779198 DOI: 10.1126/Science.1172867  0.648
2009 Nobile CJ, Nett JE, Hernday AD, Homann OR, Deneault JS, Nantel A, Andes DR, Johnson AD, Mitchell AP. Biofilm matrix regulation by Candida albicans Zap1. Plos Biology. 7: e1000133. PMID 19529758 DOI: 10.1371/Journal.Pbio.1000133  0.327
2009 Stroschein-Stevenson SL, Foley E, O'Farrell PH, Johnson AD. Phagocytosis of Candida albicans by RNAi-treated Drosophila S2 cells. Methods in Molecular Biology (Clifton, N.J.). 470: 347-58. PMID 19089394 DOI: 10.1007/978-1-59745-204-5_24  0.546
2009 Elson SL, Noble SM, Solis NV, Filler SG, Johnson AD. Correction: An RNA Transport System in Candida albicans Regulates Hyphal Morphology and Invasive Growth Plos Genetics. 5. DOI: 10.1371/Annotation/17Eb3A67-8F49-454B-Acbf-5Ff2872C27Ff  0.707
2008 Forche A, Alby K, Schaefer D, Johnson AD, Berman J, Bennett RJ. The parasexual cycle in Candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains. Plos Biology. 6: e110. PMID 18462019 DOI: 10.1371/Journal.Pbio.0060110  0.604
2008 Tuch BB, Li H, Johnson AD. Evolution of eukaryotic transcription circuits. Science (New York, N.Y.). 319: 1797-9. PMID 18369141 DOI: 10.1126/Science.1152398  0.715
2008 Tuch BB, Galgoczy DJ, Hernday AD, Li H, Johnson AD. The evolution of combinatorial gene regulation in fungi. Plos Biology. 6: e38. PMID 18303948 DOI: 10.1371/Journal.Pbio.0060038  0.821
2008 Lohse MB, Johnson AD. Differential phagocytosis of white versus opaque Candida albicans by Drosophila and mouse phagocytes. Plos One. 3: e1473. PMID 18213381 DOI: 10.1371/Journal.Pone.0001473  0.739
2007 Zordan RE, Miller MG, Galgoczy DJ, Tuch BB, Johnson AD. Interlocking transcriptional feedback loops control white-opaque switching in Candida albicans. Plos Biology. 5: e256. PMID 17880264 DOI: 10.1371/Journal.Pbio.0050256  0.814
2007 Noble SM, Johnson AD. Genetics of Candida albicans, a diploid human fungal pathogen. Annual Review of Genetics. 41: 193-211. PMID 17614788 DOI: 10.1146/Annurev.Genet.41.042007.170146  0.305
2007 Mitrovich QM, Tuch BB, Guthrie C, Johnson AD. Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans. Genome Research. 17: 492-502. PMID 17351132 DOI: 10.1101/Gr.6111907  0.698
2006 Tsong AE, Tuch BB, Li H, Johnson AD. Evolution of alternative transcriptional circuits with identical logic. Nature. 443: 415-20. PMID 17006507 DOI: 10.1038/Nature05099  0.816
2006 Bennett RJ, Johnson AD. The role of nutrient regulation and the Gpa2 protein in the mating pheromone response of C. albicans. Molecular Microbiology. 62: 100-19. PMID 16987174 DOI: 10.1111/J.1365-2958.2006.05367.X  0.603
2006 Zordan RE, Galgoczy DJ, Johnson AD. Epigenetic properties of white-opaque switching in Candida albicans are based on a self-sustaining transcriptional feedback loop. Proceedings of the National Academy of Sciences of the United States of America. 103: 12807-12. PMID 16899543 DOI: 10.1073/Pnas.0605138103  0.803
2006 Stroschein-Stevenson SL, Foley E, O'Farrell PH, Johnson AD. Identification of Drosophila gene products required for phagocytosis of Candida albicans. Plos Biology. 4: e4. PMID 16336044 DOI: 10.1371/Journal.Pbio.0040004  0.62
2005 Braun BR, van Het Hoog M, d'Enfert C, Martchenko M, Dungan J, Kuo A, Inglis DO, Uhl MA, Hogues H, Berriman M, Lorenz M, Levitin A, Oberholzer U, Bachewich C, Harcus D, ... ... Johnson AD, et al. A human-curated annotation of the Candida albicans genome. Plos Genetics. 1: 36-57. PMID 16103911 DOI: 10.1371/Journal.Pgen.0010001  0.759
2005 Hromatka BS, Noble SM, Johnson AD. Transcriptional response of Candida albicans to nitric oxide and the role of the YHB1 gene in nitrosative stress and virulence. Molecular Biology of the Cell. 16: 4814-26. PMID 16030247 DOI: 10.1091/Mbc.E05-05-0435  0.381
2005 Bennett RJ, Johnson AD. Mating in Candida albicans and the search for a sexual cycle Annual Review of Microbiology. 59: 233-255. PMID 15910278 DOI: 10.1146/Annurev.Micro.59.030804.121310  0.607
2005 Kadosh D, Johnson AD. Induction of the Candida albicans filamentous growth program by relief of transcriptional repression: a genome-wide analysis. Molecular Biology of the Cell. 16: 2903-12. PMID 15814840 DOI: 10.1091/Mbc.E05-01-0073  0.432
2005 Green SR, Johnson AD. Genome-wide analysis of the functions of a conserved surface on the corepressor Tup1. Molecular Biology of the Cell. 16: 2605-13. PMID 15788561 DOI: 10.1091/Mbc.E05-02-0126  0.623
2005 Noble SM, Johnson AD. Strains and strategies for large-scale gene deletion studies of the diploid human fungal pathogen Candida albicans. Eukaryotic Cell. 4: 298-309. PMID 15701792 DOI: 10.1128/Ec.4.2.298-309.2005  0.366
2005 Bennett RJ, Miller MG, Chua PR, Maxon ME, Johnson AD. Nuclear fusion occurs during mating in Candida albicans and is dependent on the KAR3 gene. Molecular Microbiology. 55: 1046-59. PMID 15686553 DOI: 10.1111/J.1365-2958.2005.04466.X  0.722
2004 Galgoczy DJ, Cassidy-Stone A, Llinás M, O'Rourke SM, Herskowitz I, DeRisi JL, Johnson AD. Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 101: 18069-74. PMID 15604142 DOI: 10.1073/Pnas.0407611102  0.809
2004 Green SR, Johnson AD. Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae. Molecular Biology of the Cell. 15: 4191-202. PMID 15240822 DOI: 10.1091/Mbc.E04-05-0412  0.62
2003 Johnson A. The biology of mating in Candida albicans Nature Reviews. Microbiology. 1: 106-116. PMID 15035040 DOI: 10.1038/Nrmicro752  0.321
2003 Tsong AE, Miller MG, Raisner RM, Johnson AD. Evolution of a combinatorial transcriptional circuit: a case study in yeasts. Cell. 115: 389-99. PMID 14622594 DOI: 10.1016/S0092-8674(03)00885-7  0.817
2003 Bennett RJ, Uhl MA, Miller MG, Johnson AD. Identification and characterization of a Candida albicans mating pheromone. Molecular and Cellular Biology. 23: 8189-201. PMID 14585977 DOI: 10.1128/Mcb.23.22.8189-8201.2003  0.733
2003 Uhl MA, Biery M, Craig N, Johnson AD. Haploinsufficiency-based large-scale forward genetic analysis of filamentous growth in the diploid human fungal pathogen C.albicans. The Embo Journal. 22: 2668-78. PMID 12773383 DOI: 10.1093/Emboj/Cdg256  0.412
2003 Bennett RJ, Johnson AD. Completion of a parasexual cycle in Candida albicans by induced chromosome loss in tetraploid strains. The Embo Journal. 22: 2505-15. PMID 12743044 DOI: 10.1093/Emboj/Cdg235  0.571
2003 Simic R, Lindstrom DL, Tran HG, Roinick KL, Costa PJ, Johnson AD, Hartzog GA, Arndt KM. Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. The Embo Journal. 22: 1846-56. PMID 12682017 DOI: 10.1093/Emboj/Cdg179  0.709
2003 Johnson A, Ptashne M. Obituary: Ira Herskowitz (1946–2003) Nature. 424: 384. DOI: 10.1038/424384A  0.469
2002 Inglis DO, Johnson AD. Ash1 protein, an asymmetrically localized transcriptional regulator, controls filamentous growth and virulence of Candida albicans. Molecular and Cellular Biology. 22: 8669-80. PMID 12446785 DOI: 10.1128/Mcb.22.24.8669-8680.2002  0.792
2002 Lockhart SR, Pujol C, Daniels KJ, Miller MG, Johnson AD, Pfaller MA, Soll DR. In Candida albicans, white-opaque switchers are homozygous for mating type. Genetics. 162: 737-45. PMID 12399384  0.56
2002 Miller MG, Johnson AD. White-opaque switching in Candida albicans is controlled by mating-type locus homeodomain proteins and allows efficient mating. Cell. 110: 293-302. PMID 12176317 DOI: 10.1016/S0092-8674(02)00837-1  0.652
2001 Braun BR, Kadosh D, Johnson AD. NRG1, a repressor of filamentous growth in C.albicans, is down-regulated during filament induction Embo Journal. 20: 4753-4761. PMID 11532939 DOI: 10.1093/Emboj/20.17.4753  0.416
2001 Uhl MA, Johnson AD. Development of Streptococcus thermophilus lacZ as a reporter gene for Candida albicans Microbiology. 147: 1189-1195. PMID 11320122 DOI: 10.1099/00221287-147-5-1189  0.396
2001 Kadosh D, Johnson AD. Rfg1, a protein related to the Saccharomyces cerevisiae hypoxic regulator Rox1, controls filamentous growth and virulence in Candida albicans Molecular and Cellular Biology. 21: 2496-2505. PMID 11259598 DOI: 10.1128/Mcb.21.7.2496-2505.2001  0.437
2000 Hull CM, Raisner RM, Johnson AD. Evidence for mating of the "asexual" yeast Candida albicans in a mammalian host. Science (New York, N.Y.). 289: 307-10. PMID 10894780 DOI: 10.1126/Science.289.5477.307  0.597
2000 Smith RL, Johnson AD. Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes. Trends in Biochemical Sciences. 25: 325-30. PMID 10871883 DOI: 10.1016/S0968-0004(00)01592-9  0.444
2000 Sprague ER, Redd MJ, Johnson AD, Wolberger C. Structure of the C-terminal domain of Tup1, a corepressor of transcription in yeast. The Embo Journal. 19: 3016-27. PMID 10856245 DOI: 10.1093/Emboj/19.12.3016  0.791
2000 Tran HG, Steger DJ, Iyer VR, Johnson AD. The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. The Embo Journal. 19: 2323-31. PMID 10811623 DOI: 10.1093/Emboj/19.10.2323  0.731
2000 Smith RL, Johnson AD. A sequence resembling a peroxisomal targeting sequence directs the interaction between the tetratricopeptide repeats of Ssn6 and the homeodomain of α2 Proceedings of the National Academy of Sciences of the United States of America. 97: 3901-3906. PMID 10759558 DOI: 10.1073/Pnas.070506797  0.329
1999 Hull CM, Johnson AD. Identification of a mating type-like locus in the asexual pathogenic yeast Candida albicans. Science (New York, N.Y.). 285: 1271-5. PMID 10455055 DOI: 10.1126/Science.285.5431.1271  0.622
1999 Pérez-Martín J, Uría JA, Johnson AD. Phenotypic switching in candida albicans is controlled by a SIR2 gene Embo Journal. 18: 2580-2592. PMID 10228170 DOI: 10.1093/Emboj/18.9.2580  0.412
1999 Straight AF, Shou W, Dowd GJ, Turck CW, Deshaies RJ, Johnson AD, Moazed D. Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity. Cell. 97: 245-56. PMID 10219245 DOI: 10.1016/S0092-8674(00)80734-5  0.706
1999 Stark MR, Escher D, Johnson AD. A trans-acting peptide activates the yeast a1 repressor by raising its DNA-binding affinity Embo Journal. 18: 1621-1629. PMID 10075932 DOI: 10.1093/Emboj/18.6.1621  0.36
1998 Wahi M, Komachi K, Johnson AD. Gene regulation by the yeast Ssn6-Tup1 corepressor Cold Spring Harbor Symposia On Quantitative Biology. 63: 447-457. PMID 10384309 DOI: 10.1101/Sqb.1998.63.447  0.4
1998 Pérez-Martín J, Johnson AD. The C-terminal domain of Sin1 interacts with the SWI-SNF complex in yeast Molecular and Cellular Biology. 18: 4157-4164. PMID 9632800 DOI: 10.1128/Mcb.18.7.4157  0.348
1998 Pérez-Martín J, Johnson AD. Mutations in chromatin components suppress a defect of gcn5 protein in Saccharomyces cerevisiae Molecular and Cellular Biology. 18: 1049-1054. PMID 9448002 DOI: 10.1128/Mcb.18.2.1049  0.372
1997 Komachi K, Johnson AD. Residues in the WD repeats of Tup1 required for interaction with α2 Molecular and Cellular Biology. 17: 6023-6028. PMID 9315661 DOI: 10.1128/Mcb.17.10.6023  0.349
1997 Braun BR, Johnson AD. Control of filament formation in Candida albicans by the transcriptional repressor TUP1 Science. 277: 105-109. PMID 9204892 DOI: 10.1126/Science.277.5322.105  0.428
1997 Moazed D, Kistler A, Axelrod A, Rine J, Johnson AD. Silent information regulator protein complexes in Saccharomyces cerevisiae: a SIR2/SIR4 complex and evidence for a regulatory domain in SIR4 that inhibits its interaction with SIR3. Proceedings of the National Academy of Sciences of the United States of America. 94: 2186-91. PMID 9122169 DOI: 10.1073/Pnas.94.6.2186  0.738
1997 Redd MJ, Arnaud MB, Johnson AD. A complex composed of tup1 and ssn6 represses transcription in vitro. The Journal of Biological Chemistry. 272: 11193-7. PMID 9111019 DOI: 10.1074/Jbc.272.17.11193  0.717
1996 Redd MJ, Stark MR, Johnson AD. Accessibility of alpha 2-repressed promoters to the activator Gal4. Molecular and Cellular Biology. 16: 2865-9. PMID 8649396 DOI: 10.1128/MCB.16.6.2865  0.672
1995 Johnson AD. Molecular mechanisms of cell-type determination in budding yeast Current Opinion in Genetics and Development. 5: 552-558. PMID 8664541 DOI: 10.1016/0959-437X(95)80022-0  0.427
1995 Vershon AK, Jin Y, Johnson AD. A homeo domain protein lacking specific side chains of helix 3 can still bind DNA and direct transcriptional repression Genes and Development. 9: 182-192. PMID 7851792 DOI: 10.1101/Gad.9.2.182  0.337
1995 Li T, Stark M, Johnson AD, Wolberger C. Crystallization and preliminary X-ray diffraction studies of an a1/alpha 2/DNA ternary complex. Proteins. 21: 161-4. PMID 7777491 DOI: 10.1002/Prot.340210210  0.571
1995 Smith DL, Desai AB, Johnson AD. DNA bending by the a1 and α2 homeodomain proteins from yeast Nucleic Acids Research. 23: 1239-1243. PMID 7739902 DOI: 10.1093/Nar/23.7.1239  0.302
1995 Forbes DJ, Johnson AD. Nucleus and gene expression Current Opinion in Cell Biology. 7: 299-300. PMID 7662357 DOI: 10.1016/0955-0674(95)80082-4  0.304
1995 Li T, Stark MR, Johnson AD, Wolberger C. Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA. Science (New York, N.Y.). 270: 262-9. PMID 7569974 DOI: 10.1126/Science.270.5234.262  0.611
1995 Smith RL, Redd MJ, Johnson AD. The tetratricopeptide repeats of Ssn6 interact with the homeo domain of alpha 2. Genes & Development. 9: 2903-10. PMID 7498787 DOI: 10.1101/Gad.9.23.2903  0.689
1994 Stark MR, Johnson AD. Interaction between two homeodomain proteins is specified by a short C-terminal tail Nature. 371: 429-432. PMID 8090224 DOI: 10.1038/371429A0  0.328
1994 Phillips CL, Stark MR, Johnson AD, Dahlquist FW. Heterodimerization of the yeast homeodomain transcriptional regulators alpha 2 and a1 induces an interfacial helix in alpha 2. Biochemistry. 33: 9294-302. PMID 8049230 DOI: 10.1021/Bi00197A033  0.32
1994 Herschbach BM, Arnaud MB, Johnson AD. Transcriptional repression directed by the yeast alpha 2 protein in vitro. Nature. 370: 309-11. PMID 8035881 DOI: 10.1038/370309A0  0.407
1994 Komachi K, Redd MJ, Johnson AD. The WD repeats of Tup1 interact with the homeo domain protein alpha 2. Genes & Development. 8: 2857-67. PMID 7995523 DOI: 10.1101/Gad.8.23.2857  0.707
1994 Smith DL, Johnson AD. Operator-constitutive mutations in a DNA sequence recognized by a yeast homeodomain. The Embo Journal. 13: 2378-2387. DOI: 10.1002/J.1460-2075.1994.Tb06521.X  0.388
1994 Goutte C, Johnson A. Recognition of a DNA operator by a dimer composed of two different homeodomain proteins. The Embo Journal. 13: 1434-1442. DOI: 10.1002/J.1460-2075.1994.Tb06397.X  0.31
1993 Vershon AK, Johnson AD. A short, disordered protein region mediates interactions between the homeodomain of the yeast α2 protein and the MCM1 protein Cell. 72: 105-112. PMID 8422672 DOI: 10.1016/0092-8674(93)90054-T  0.35
1993 Goutte C, Johnson AD. Yeast a1 and α2 homeodomain proteins form a DNA-binding activity with properties distinct from those of either protein Journal of Molecular Biology. 233: 359-371. PMID 8411150 DOI: 10.1006/Jmbi.1993.1517  0.713
1993 Herschbach BM, Johnson AD. The yeast α2 protein can repress transcription by RNA polymerases I and II but not III Molecular and Cellular Biology. 13: 4029-4038. PMID 8321210 DOI: 10.1128/Mcb.13.7.4029  0.318
1993 Herschbach BM, Johnson AD. Transcriptional repression in eukaryotes Annual Review of Cell Biology. 9: 479-509. PMID 8280469 DOI: 10.1146/Annurev.Cb.09.110193.002403  0.373
1992 Keleher CA, Redd MJ, Schultz J, Carlson M, Johnson AD. Ssn6-Tup1 is a general repressor of transcription in yeast. Cell. 68: 709-19. PMID 1739976 DOI: 10.1016/0092-8674(92)90146-4  0.731
1992 Smith DL, Johnson AD. A molecular mechanism for combinatorial control in yeast: MCM1 protein sets the spacing and orientation of the homeodomains of an α2 dimer Cell. 68: 133-142. PMID 1732062 DOI: 10.1016/0092-8674(92)90212-U  0.34
1992 Vershon AK, Hollingsworth NM, Johnson AD. Meiotic Induction of the Yeast HOP1 Gene Is Controlled by Positive and Negative Regulatory Sites Molecular and Cellular Biology. 12: 3706-3714. PMID 1508177 DOI: 10.1128/Mcb.12.9.3706  0.41
1992 Johnson A. 37 A Combinatorial Regulatory Circuit in Budding Yeast Cold Spring Harbor Monograph Archive. 975-1006. DOI: 10.1101/087969425.22B.975  0.409
1991 Wolberger C, Pabo CO, Vershon AK, Johnson AD. Crystallization and preliminary X-ray diffraction studies of a MAT alpha 2-DNA complex. Journal of Molecular Biology. 217: 11-3. PMID 1988673 DOI: 10.1016/0022-2836(91)90605-6  0.717
1991 Wolberger C, Vershon AK, Liu B, Johnson AD, Pabo CO. Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions. Cell. 67: 517-28. PMID 1682054 DOI: 10.1016/0092-8674(91)90526-5  0.73
1991 Phillips CL, Vershon AK, Johnson AD, Dahlquist FW. Secondary structure of the homeo domain of yeast alpha 2 repressor determined by NMR spectroscopy. Genes & Development. 5: 764-72. PMID 1673952 DOI: 10.1101/Gad.5.5.764  0.312
1989 Keleher CA, Passmore S, Johnson AD. Yeast repressor α2 binds to its operator cooperatively with yeast protein Mcm1 Molecular and Cellular Biology. 9: 5228-5230. PMID 2689875 DOI: 10.1128/Mcb.9.11.5228  0.424
1988 Keleher CA, Goutte C, Johnson AD. The yeast cell-type-specific repressor α2 acts cooperatively with a non-cell-type-specific protein Cell. 53: 927-936. PMID 3289753 DOI: 10.1016/S0092-8674(88)90449-7  0.725
1988 Goutte C, Johnson AD. a1 Protein alters the dna binding specificity of α2 repressor Cell. 52: 875-882. PMID 3127056 DOI: 10.1016/0092-8674(88)90429-1  0.719
1988 Sauer RT, Smith DL, Johnson AD. Flexibility of the yeast alpha 2 repressor enables it to occupy the ends of its operator, leaving the center free Genes &Amp; Development. 2: 807-816. PMID 3061876 DOI: 10.1101/Gad.2.7.807  0.543
1987 Hall MN, Johnson AD. Homeo domain of the yeast repressor α2 is a sequence-specific DNA-binding domain but is not sufficient for repression Science. 237: 1007-1012. PMID 2887035 DOI: 10.1126/Science.2887035  0.418
1985 Johnson AD, Herskowitz I. A repressor (MAT alpha 2 Product) and its operator control expression of a set of cell type specific genes in yeast. Cell. 42: 237-47. PMID 3893743 DOI: 10.1016/S0092-8674(85)80119-7  0.622
1983 Gussin GN, Johnson AD, Pabo CO, Sauer RT. Repressor and Cro Protein: Structure, Function, and Role in Lysogenization Cold Spring Harbor Monograph Archive. 13: 93-121. DOI: 10.1101/087969150.13.93  0.557
1982 Ackers GK, Johnson AD, Shea MA. Quantitative model for gene regulation by lambda phage repressor. Proceedings of the National Academy of Sciences of the United States of America. 79: 1129-33. PMID 6461856 DOI: 10.1073/Pnas.79.4.1129  0.356
1982 Ptashne M, Johnson AD, Pabo CO. A genetic switch in a bacterial virus. Scientific American. 247: 128-30, 132, 134-40. PMID 6216590 DOI: 10.1038/Scientificamerican1182-128  0.689
1981 Johnson AD, Poteete AR, Lauer G, Sauer RT, Ackers GK, Ptashne M. lambda Repressor and cro--components of an efficient molecular switch. Nature. 294: 217-23. PMID 6457992 DOI: 10.1038/294217A0  0.66
1980 Johnson AD, Pabo CO, Sauer RT. Bacteriophage lambda repressor and cro protein: interactions with operator DNA. Methods in Enzymology. 65: 839-56. PMID 6445470 DOI: 10.1016/S0076-6879(80)65078-2  0.715
1980 Ptashne M, Jeffrey A, Johnson AD, Maurer R, Meyer BJ, Pabo CO, Roberts TM, Sauer RT. How the lambda repressor and cro work. Cell. 19: 1-11. PMID 6444544 DOI: 10.1016/0092-8674(80)90383-9  0.735
1979 Johnson AD, Meyer BJ, Ptashne M. Interactions between DNA-bound repressors govern regulation by the lambda phage repressor. Proceedings of the National Academy of Sciences of the United States of America. 76: 5061-5. PMID 159452 DOI: 10.1073/Pnas.76.10.5061  0.619
1978 Johnson A, Meyer BJ, Ptashne M. Mechanism of action of the cro protein of bacteriophage lambda. Proceedings of the National Academy of Sciences of the United States of America. 75: 1783-7. PMID 273909 DOI: 10.1073/Pnas.75.4.1783  0.67
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