| Year |
Citation |
Score |
| 2024 |
Bizarria R, Creagh JW, Badigian TJ, Corrêa Dos Santos RA, Coss SA, Tekle RT, Fredstrom N, Ytreberg FM, Dunham MJ, Rodrigues A, Rowley PA. The Prevalence of Killer Yeasts in the Gardens of Fungus-Growing Ants and the Discovery of Novel Killer Toxin named Ksino. Biorxiv : the Preprint Server For Biology. PMID 39463942 DOI: 10.1101/2024.10.14.618321 |
0.309 |
|
| 2024 |
Brewer BJ, Dunham MJ, Raghuraman MK. A unifying model that explains the origins of human inverted copy number variants. Plos Genetics. 20: e1011091. PMID 38175827 DOI: 10.1371/journal.pgen.1011091 |
0.3 |
|
| 2023 |
Garge RK, Geck RC, Armstrong JO, Dunn B, Boutz DR, Battenhouse A, Leutert M, Dang V, Jiang P, Kwiatkowski D, Peiser T, McElroy H, Marcotte EM, Dunham MJ. Systematic Profiling of Ale Yeast Protein Dynamics across Fermentation and Repitching. G3 (Bethesda, Md.). PMID 38135291 DOI: 10.1093/g3journal/jkad293 |
0.627 |
|
| 2023 |
Garge RK, Geck RC, Armstrong JO, Dunn B, Boutz DR, Battenhouse A, Leutert M, Dang V, Jiang P, Kwiatkowski D, Peiser T, McElroy H, Marcotte EM, Dunham MJ. Systematic Profiling of Ale Yeast Protein Dynamics across Fermentation and Repitching. Biorxiv : the Preprint Server For Biology. PMID 37790497 DOI: 10.1101/2023.09.21.558736 |
0.625 |
|
| 2023 |
Keller A, Gao LL, Witten D, Dunham MJ. Condition-dependent fitness effects of large synthetic chromosome amplifications. Biorxiv : the Preprint Server For Biology. PMID 37333112 DOI: 10.1101/2023.06.08.544269 |
0.307 |
|
| 2023 |
Hoerr RE, Eng A, Payen C, Di Rienzi SC, Raghuraman MK, Dunham MJ, Brewer BJ, Friedman KL. Hotspot of de novo telomere addition stabilizes linear amplicons in yeast grown in sulfate-limiting conditions. Genetics. PMID 36702776 DOI: 10.1093/genetics/iyad010 |
0.363 |
|
| 2022 |
Walker ME, Watson TL, Large CRL, Berkovich Y, Lang TA, Dunham MJ, Formby S, Jiranek V. Directed evolution as an approach to increase fructose utilisation in synthetic grape juice by wine yeast AWRI 796. Fems Yeast Research. PMID 35472090 DOI: 10.1093/femsyr/foac022 |
0.343 |
|
| 2022 |
Saada OA, Tsouris A, Large C, Friedrich A, Dunham MJ, Schacherer J. Phased polyploid genomes provide deeper insight into the multiple origins of domesticated Saccharomyces cerevisiae beer yeasts. Current Biology : Cb. PMID 35180385 DOI: 10.1016/j.cub.2022.01.068 |
0.389 |
|
| 2020 |
Koonthongkaew J, Toyokawa Y, Ohashi M, Large CRL, Dunham MJ, Takagi H. Effect of the Ala234Asp replacement in mitochondrial branched-chain amino acid aminotransferase on the production of BCAAs and fusel alcohols in yeast. Applied Microbiology and Biotechnology. PMID 32776205 DOI: 10.1007/S00253-020-10800-Y |
0.333 |
|
| 2020 |
Terhorst A, Sandikci A, Keller A, Whittaker CA, Dunham MJ, Amon A. The environmental stress response causes ribosome loss in aneuploid yeast cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 32632008 DOI: 10.1073/Pnas.2005648117 |
0.346 |
|
| 2019 |
Lancaster SM, Payen C, Smukowski Heil C, Dunham MJ. Fitness benefits of loss of heterozygosity in hybrids. Genome Research. 29: 1685-1692. PMID 31548357 DOI: 10.1101/Gr.245605.118 |
0.429 |
|
| 2019 |
Dalton R, Lee SB, Claw KG, Prasad B, Phillips BR, Shen DD, Hong Wong L, Fade M, McDonald MG, Dunham MJ, Fowler DM, Rettie AE, Schuetz E, Thornton TA, Nickerson DA, et al. Interrogation of CYP2D6 structural variant alleles improves the correlation between CYP2D6 genotype and CYP2D6-mediated metabolic activity. Clinical and Translational Science. PMID 31536170 DOI: 10.1111/Cts.12695 |
0.323 |
|
| 2019 |
Smukowski Heil CS, Large CRL, Patterson K, Hickey AS, Yeh CC, Dunham MJ. Temperature preference can bias parental genome retention during hybrid evolution. Plos Genetics. 15: e1008383. PMID 31525194 DOI: 10.1371/Journal.Pgen.1008383 |
0.408 |
|
| 2019 |
Sanchez JC, Ollodart A, Large CRL, Clough C, Alvino GM, Tsuchiya M, Crane M, Kwan EX, Kaeberlein M, Dunham MJ, Raghuraman MK, Brewer BJ. Phenotypic and Genotypic Consequences of CRISPR/Cas9 Editing of the Replication Origins in the rDNA of . Genetics. PMID 31292210 DOI: 10.1534/Genetics.119.302351 |
0.445 |
|
| 2019 |
Kim S, Dunham MJ, Shendure J. A combination of transcription factors mediates inducible interchromosomal contacts. Elife. 8. PMID 31081754 DOI: 10.7554/Elife.42499 |
0.336 |
|
| 2019 |
Fay JC, Liu P, Ong GT, Dunham MJ, Cromie GA, Jeffery EW, Ludlow CL, Dudley AM. A polyploid admixed origin of beer yeasts derived from European and Asian wine populations. Plos Biology. 17: e3000147. PMID 30835725 DOI: 10.1371/Journal.Pbio.3000147 |
0.334 |
|
| 2019 |
Sanchez MR, Payen C, Cheong F, Hovde BT, Bissonnette S, Arkin AP, Skerker JM, Brem RB, Caudy AA, Dunham MJ. Transposon insertional mutagenesis in reveals trans-acting effects influencing species-dependent essential genes. Genome Research. PMID 30635343 DOI: 10.1101/Gr.232330.117 |
0.482 |
|
| 2017 |
Heil CS, Burton JN, Liachko I, Friedrich A, Hanson NA, Morris CL, Schacherer J, Shendure J, Thomas JH, Dunham MJ. Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C. Yeast (Chichester, England). PMID 28892574 DOI: 10.1002/Yea.3280 |
0.441 |
|
| 2017 |
Starita LM, Ahituv N, Dunham MJ, Kitzman JO, Roth FP, Seelig G, Shendure J, Fowler DM. Variant Interpretation: Functional Assays to the Rescue. American Journal of Human Genetics. 101: 315-325. PMID 28886340 DOI: 10.1016/J.Ajhg.2017.07.014 |
0.353 |
|
| 2017 |
Dunham MJ, Kerr EO, Miller AW, Payen C. Chemostat Culture for Yeast Physiology and Experimental Evolution. Cold Spring Harbor Protocols. 2017: pdb.top077610. PMID 28679718 DOI: 10.1101/Pdb.Top077610 |
0.328 |
|
| 2017 |
Payen C, Dunham MJ. Chemostat Culture for Yeast Experimental Evolution. Cold Spring Harbor Protocols. 2017: pdb.prot089011. PMID 28679700 DOI: 10.1101/Pdb.Prot089011 |
0.356 |
|
| 2017 |
Kerr EO, Dunham MJ. Chemostat Culture for Yeast Physiology. Cold Spring Harbor Protocols. 2017: pdb.prot089003. PMID 28679699 DOI: 10.1101/Pdb.Prot089003 |
0.348 |
|
| 2017 |
Miller AW, Kerr EO, Dunham MJ. Assembly of a Mini-Chemostat Array. Cold Spring Harbor Protocols. 2017: pdb.prot088997. PMID 28679698 DOI: 10.1101/Pdb.Prot088997 |
0.354 |
|
| 2017 |
Kim S, Liachko I, Brickner DG, Cook K, Noble WS, Brickner JH, Shendure J, Dunham MJ. The dynamic three-dimensional organization of the diploid yeast genome. Elife. 6. PMID 28537556 DOI: 10.7554/Elife.23623 |
0.434 |
|
| 2017 |
Hope EA, Amorosi CJ, Miller AW, Dang K, Heil CS, Dunham MJ. Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast. Genetics. PMID 28450459 DOI: 10.1534/Genetics.116.198895 |
0.751 |
|
| 2017 |
Callens C, Coelho NC, Miller AW, Domino Sananes MR, Dunham MJ, Denoual M, Coudreuse D. A multiplex culture system for the long-term growth of fission yeast cells. Yeast (Chichester, England). PMID 28426144 DOI: 10.1002/Yea.3237 |
0.342 |
|
| 2017 |
Smukowski Heil CS, DeSevo CG, Pai DA, Tucker CM, Hoang ML, Dunham MJ. Loss of heterozygosity drives adaptation in hybrid yeast. Molecular Biology and Evolution. PMID 28369610 DOI: 10.1093/Molbev/Msx098 |
0.47 |
|
| 2017 |
Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, ... ... Dunham MJ, et al. Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nature Genetics. PMID 28263316 DOI: 10.1038/Ng.3802 |
0.37 |
|
| 2017 |
Sanchez MR, Miller AW, Liachko I, Sunshine AB, Lynch B, Huang M, Alcantara E, DeSevo CG, Pai DA, Tucker CM, Hoang ML, Dunham MJ. Differential paralog divergence modulates genome evolution across yeast species. Plos Genetics. 13: e1006585. PMID 28196070 DOI: 10.1371/Journal.Pgen.1006585 |
0.43 |
|
| 2017 |
Kim S, Liachko I, Brickner DG, Cook K, Noble WS, Brickner JH, Shendure J, Dunham MJ. Author response: The dynamic three-dimensional organization of the diploid yeast genome Elife. DOI: 10.7554/Elife.23623.031 |
0.357 |
|
| 2016 |
Studer RA, Rodriguez-Mias RA, Haas KM, Hsu JI, Viéitez C, Solé C, Swaney DL, Stanford LB, Liachko I, Böttcher R, Dunham MJ, de Nadal E, Posas F, Beltrao P, Villén J. Evolution of protein phosphorylation across 18 fungal species. Science (New York, N.Y.). 354: 229-232. PMID 27738172 DOI: 10.1126/Science.Aaf2144 |
0.359 |
|
| 2016 |
Payen C, Sunshine AB, Ong GT, Pogachar JL, Zhao W, Dunham MJ. High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations. Plos Genetics. 12: e1006339. PMID 27727276 DOI: 10.1371/Journal.Pgen.1006339 |
0.365 |
|
| 2016 |
Burrack LS, Hutton HF, Matter KJ, Clancey SA, Liachko I, Plemmons AE, Saha A, Power EA, Turman B, Thevandavakkam MA, Ay F, Dunham MJ, Berman J. Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome. Plos Genetics. 12: e1006317. PMID 27662467 DOI: 10.1371/Journal.Pgen.1006317 |
0.36 |
|
| 2016 |
Camattari A, Goh A, Yip LY, Tan AH, Ng SW, Tran A, Liu G, Liachko I, Dunham MJ, Rancati G. Characterization of a panARS-based episomal vector in the methylotrophic yeast Pichia pastoris for recombinant protein production and synthetic biology applications. Microbial Cell Factories. 15: 139. PMID 27515025 DOI: 10.1186/S12934-016-0540-5 |
0.361 |
|
| 2016 |
Hou J, Sigwalt A, Fournier T, Pflieger D, Peter J, de Montigny J, Dunham MJ, Schacherer J. The Hidden Complexity of Mendelian Traits across Natural Yeast Populations. Cell Reports. PMID 27396326 DOI: 10.1016/J.Celrep.2016.06.048 |
0.334 |
|
| 2016 |
Rich MS, Payen C, Rubin AF, Ong GT, Sanchez MR, Yachie N, Dunham MJ, Fields S. The Effects of Cis-Regulatory Mutations in the SUL1 Gene on Sulfate-Limited Fitness in Yeast. Genetics. PMID 26936925 DOI: 10.1534/Genetics.116.188037 |
0.34 |
|
| 2016 |
Hoggard T, Liachko I, Burt C, Meikle T, Jiang K, Craciun G, Dunham M, Fox CA. High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation. G3 (Bethesda, Md.). PMID 26865697 DOI: 10.1534/G3.116.027904 |
0.386 |
|
| 2016 |
Sunshine AB, Ong GT, Nickerson DP, Carr D, Murakami CJ, Wasko BM, Shemorry A, Merz AJ, Kaeberlein M, Dunham MJ. Aneuploidy shortens replicative lifespan in Saccharomyces cerevisiae. Aging Cell. PMID 26762766 DOI: 10.1111/Acel.12443 |
0.581 |
|
| 2016 |
Payen C, Dunham MJ. Experimental Evolution and Resequencing Analysis of Yeast. Methods in Molecular Biology (Clifton, N.J.). 1361: 361-74. PMID 26483032 DOI: 10.1007/978-1-4939-3079-1_20 |
0.467 |
|
| 2015 |
Brewer BJ, Payen C, Di Rienzi SC, Higgins MM, Ong G, Dunham MJ, Raghuraman MK. Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification. Plos Genetics. 11: e1005699. PMID 26700858 DOI: 10.1371/Journal.Pgen.1005699 |
0.436 |
|
| 2015 |
López-Malo M, García-Rios E, Melgar B, Sanchez MR, Dunham MJ, Guillamón JM. Evolutionary engineering of a wine yeast strain revealed a key role of inositol and mannoprotein metabolism during low-temperature fermentation. Bmc Genomics. 16: 537. PMID 26194190 DOI: 10.1186/S12864-015-1755-2 |
0.393 |
|
| 2015 |
Sunshine AB, Payen C, Ong GT, Liachko I, Tan KM, Dunham MJ. The fitness consequences of aneuploidy are driven by condition-dependent gene effects. Plos Biology. 13: e1002155. PMID 26011532 DOI: 10.1371/Journal.Pbio.1002155 |
0.511 |
|
| 2015 |
Varoquaux N, Liachko I, Ay F, Burton JN, Shendure J, Dunham MJ, Vert JP, Noble WS. Accurate identification of centromere locations in yeast genomes using Hi-C. Nucleic Acids Research. 43: 5331-9. PMID 25940625 DOI: 10.1093/Nar/Gkv424 |
0.429 |
|
| 2015 |
Khakhina S, Johnson SS, Manoharlal R, Russo SB, Blugeon C, Lemoine S, Sunshine AB, Dunham MJ, Cowart LA, Devaux F, Moye-Rowley WS. Control of Plasma Membrane Permeability by ABC Transporters. Eukaryotic Cell. 14: 442-53. PMID 25724885 DOI: 10.1128/Ec.00021-15 |
0.3 |
|
| 2014 |
Gresham D, Dunham MJ. The enduring utility of continuous culturing in experimental evolution. Genomics. 104: 399-405. PMID 25281774 DOI: 10.1016/J.Ygeno.2014.09.015 |
0.328 |
|
| 2014 |
Hope EA, Dunham MJ. Ploidy-regulated variation in biofilm-related phenotypes in natural isolates of Saccharomyces cerevisiae. G3 (Bethesda, Md.). 4: 1773-86. PMID 25060625 DOI: 10.1534/G3.114.013250 |
0.376 |
|
| 2014 |
Burton JN, Liachko I, Dunham MJ, Shendure J. Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps. G3 (Bethesda, Md.). 4: 1339-46. PMID 24855317 DOI: 10.1534/G3.114.011825 |
0.384 |
|
| 2014 |
Liachko I, Youngblood RA, Tsui K, Bubb KL, Queitsch C, Raghuraman MK, Nislow C, Brewer BJ, Dunham MJ. GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris. Plos Genetics. 10: e1004169. PMID 24603708 DOI: 10.1371/Journal.Pgen.1004169 |
0.37 |
|
| 2014 |
Payen C, Di Rienzi SC, Ong GT, Pogachar JL, Sanchez JC, Sunshine AB, Raghuraman MK, Brewer BJ, Dunham MJ. The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection. G3 (Bethesda, Md.). 4: 399-409. PMID 24368781 DOI: 10.1534/G3.113.009365 |
0.392 |
|
| 2014 |
Liachko I, Dunham MJ. An autonomously replicating sequence for use in a wide range of budding yeasts. Fems Yeast Research. 14: 364-7. PMID 24205893 DOI: 10.1111/1567-1364.12123 |
0.408 |
|
| 2013 |
Dunham MJ, Fowler DM. Contemporary, yeast-based approaches to understanding human genetic variation. Current Opinion in Genetics & Development. 23: 658-64. PMID 24252429 DOI: 10.1016/J.Gde.2013.10.001 |
0.389 |
|
| 2013 |
Teng X, Dayhoff-Brannigan M, Cheng WC, Gilbert CE, Sing CN, Diny NL, Wheelan SJ, Dunham MJ, Boeke JD, Pineda FJ, Hardwick JM. Genome-wide consequences of deleting any single gene. Molecular Cell. 52: 485-94. PMID 24211263 DOI: 10.1016/J.Molcel.2013.09.026 |
0.487 |
|
| 2013 |
Caudy AA, Guan Y, Jia Y, Hansen C, DeSevo C, Hayes AP, Agee J, Alvarez-Dominguez JR, Arellano H, Barrett D, Bauerle C, Bisaria N, Bradley PH, Breunig JS, Bush E, ... ... Dunham MJ, et al. A new system for comparative functional genomics of Saccharomyces yeasts. Genetics. 195: 275-87. PMID 23852385 DOI: 10.1534/Genetics.113.152918 |
0.716 |
|
| 2013 |
Tien JF, Fong KK, Umbreit NT, Payen C, Zelter A, Asbury CL, Dunham MJ, Davis TN. Coupling unbiased mutagenesis to high-throughput DNA sequencing uncovers functional domains in the Ndc80 kinetochore protein of Saccharomyces cerevisiae. Genetics. 195: 159-70. PMID 23833183 DOI: 10.1534/Genetics.113.152728 |
0.331 |
|
| 2013 |
Skelly DA, Merrihew GE, Riffle M, Connelly CF, Kerr EO, Johansson M, Jaschob D, Graczyk B, Shulman NJ, Wakefield J, Cooper SJ, Fields S, Noble WS, Muller EG, Davis TN, ... Dunham MJ, et al. Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast. Genome Research. 23: 1496-504. PMID 23720455 DOI: 10.1101/Gr.155762.113 |
0.397 |
|
| 2013 |
Connelly CF, Skelly DA, Dunham MJ, Akey JM. Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains. Molecular Biology and Evolution. 30: 1605-13. PMID 23619145 DOI: 10.1093/Molbev/Mst073 |
0.446 |
|
| 2013 |
Miller AW, Befort C, Kerr EO, Dunham MJ. Design and use of multiplexed chemostat arrays. Journal of Visualized Experiments : Jove. e50262. PMID 23462663 DOI: 10.3791/50262 |
0.405 |
|
| 2013 |
Guan Y, Dunham MJ, Troyanskaya OG, Caudy AA. Comparative gene expression between two yeast species. Bmc Genomics. 14: 33. PMID 23324262 DOI: 10.1186/1471-2164-14-33 |
0.612 |
|
| 2013 |
Liachko I, Youngblood RA, Keich U, Dunham MJ. High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Research. 23: 698-704. PMID 23241746 DOI: 10.1101/Gr.144659.112 |
0.443 |
|
| 2012 |
Kelly MK, Brosnan L, Jauert PA, Dunham MJ, Kirkpatrick DT. Multiple pathways regulate minisatellite stability during stationary phase in yeast. G3 (Bethesda, Md.). 2: 1185-95. PMID 23050229 DOI: 10.1534/G3.112.003673 |
0.335 |
|
| 2012 |
Sheltzer JM, Torres EM, Dunham MJ, Amon A. Transcriptional consequences of aneuploidy. Proceedings of the National Academy of Sciences of the United States of America. 109: 12644-9. PMID 22802626 DOI: 10.1073/Pnas.1209227109 |
0.408 |
|
| 2012 |
Dunham MJ. Two flavors of bulk segregant analysis in yeast. Methods in Molecular Biology (Clifton, N.J.). 871: 41-54. PMID 22565832 DOI: 10.1007/978-1-61779-785-9_4 |
0.396 |
|
| 2012 |
Stirling PC, Crisp MJ, Basrai MA, Tucker CM, Dunham MJ, Spencer FA, Hieter P. Mutability and mutational spectrum of chromosome transmission fidelity genes. Chromosoma. 121: 263-75. PMID 22198145 DOI: 10.1007/S00412-011-0356-3 |
0.412 |
|
| 2011 |
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, Rine J, Johnston M, Hittinger CT. The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus. G3 (Bethesda, Md.). 1: 11-25. PMID 22384314 DOI: 10.1534/G3.111.000273 |
0.73 |
|
| 2011 |
Guan Y, Yao V, Tsui K, Gebbia M, Dunham MJ, Nislow C, Troyanskaya OG. Nucleosome-coupled expression differences in closely-related species. Bmc Genomics. 12: 466. PMID 21942931 DOI: 10.1186/1471-2164-12-466 |
0.591 |
|
| 2011 |
Calahan D, Dunham M, DeSevo C, Koshland DE. Genetic analysis of desiccation tolerance in Sachharomyces cerevisiae. Genetics. 189: 507-19. PMID 21840858 DOI: 10.1534/Genetics.111.130369 |
0.609 |
|
| 2011 |
Brewer BJ, Payen C, Raghuraman MK, Dunham MJ. Origin-dependent inverted-repeat amplification: a replication-based model for generating palindromic amplicons. Plos Genetics. 7: e1002016. PMID 21437266 DOI: 10.1371/Journal.Pgen.1002016 |
0.396 |
|
| 2011 |
Dunham MJ, Louis EJ. Yeast evolution and ecology meet genomics. Embo Reports. 12: 8-10. PMID 21151040 DOI: 10.1038/Embor.2010.204 |
0.416 |
|
| 2010 |
Hoang ML, Tan FJ, Lai DC, Celniker SE, Hoskins RA, Dunham MJ, Zheng Y, Koshland D. Competitive repair by naturally dispersed repetitive DNA during non-allelic homologous recombination. Plos Genetics. 6: e1001228. PMID 21151956 DOI: 10.1371/Journal.Pgen.1001228 |
0.657 |
|
| 2010 |
Dunham MJ. Experimental evolution in yeast: a practical guide. Methods in Enzymology. 470: 487-507. PMID 20946822 DOI: 10.1016/S0076-6879(10)70019-7 |
0.31 |
|
| 2010 |
Torres EM, Dephoure N, Panneerselvam A, Tucker CM, Whittaker CA, Gygi SP, Dunham MJ, Amon A. Identification of aneuploidy-tolerating mutations. Cell. 143: 71-83. PMID 20850176 DOI: 10.1016/J.Cell.2010.08.038 |
0.397 |
|
| 2010 |
Guan Y, Dunham M, Caudy A, Troyanskaya O. Systematic planning of genome-scale experiments in poorly studied species Plos Computational Biology. 6. PMID 20221257 DOI: 10.1371/Journal.Pcbi.1000698 |
0.603 |
|
| 2010 |
Araya CL, Payen C, Dunham MJ, Fields S. Whole-genome sequencing of a laboratory-evolved yeast strain. Bmc Genomics. 11: 88. PMID 20128923 DOI: 10.1186/1471-2164-11-88 |
0.491 |
|
| 2009 |
Martin OC, DeSevo CG, Guo BZ, Koshland DE, Dunham MJ, Zheng Y. Telomere behavior in a hybrid yeast. Cell Research. 19: 910-2. PMID 19506581 DOI: 10.1038/Cr.2009.65 |
0.559 |
|
| 2009 |
Fiumera HL, Dunham MJ, Saracco SA, Butler CA, Kelly JA, Fox TD. Translocation and assembly of mitochondrially coded Saccharomyces cerevisiae cytochrome c oxidase subunit Cox2 by Oxa1 and Yme1 in the absence of Cox18. Genetics. 182: 519-28. PMID 19307606 DOI: 10.1534/Genetics.109.101196 |
0.32 |
|
| 2009 |
Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, Troyanskaya OG. Predicting cellular growth from gene expression signatures. Plos Computational Biology. 5: e1000257. PMID 19119411 DOI: 10.1371/Journal.Pcbi.1000257 |
0.709 |
|
| 2008 |
Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham MJ. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. Plos Genetics. 4: e1000303. PMID 19079573 DOI: 10.1371/Journal.Pgen.1000303 |
0.58 |
|
| 2008 |
Cheng WC, Teng X, Park HK, Tucker CM, Dunham MJ, Hardwick JM. Fis1 deficiency selects for compensatory mutations responsible for cell death and growth control defects. Cell Death and Differentiation. 15: 1838-46. PMID 18756280 DOI: 10.1038/Cdd.2008.117 |
0.351 |
|
| 2008 |
Gresham D, Dunham MJ, Botstein D. Comparing whole genomes using DNA microarrays. Nature Reviews. Genetics. 9: 291-302. PMID 18347592 DOI: 10.1038/Nrg2335 |
0.595 |
|
| 2007 |
Torres EM, Sokolsky T, Tucker CM, Chan LY, Boselli M, Dunham MJ, Amon A. Effects of aneuploidy on cellular physiology and cell division in haploid yeast. Science (New York, N.Y.). 317: 916-24. PMID 17702937 DOI: 10.1126/Science.1142210 |
0.407 |
|
| 2007 |
Dunham MJ. Synthetic ecology: a model system for cooperation. Proceedings of the National Academy of Sciences of the United States of America. 104: 1741-2. PMID 17267618 DOI: 10.1073/Pnas.0611067104 |
0.318 |
|
| 2007 |
Guan Y, Dunham MJ, Troyanskaya OG. Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics. 175: 933-43. PMID 17151249 DOI: 10.1534/Genetics.106.064329 |
0.64 |
|
| 2007 |
Hibbs M, Wallace G, Dunham M, Li K, Troyanskaya O. Viewing the larger context of genomic data through horizontal integration Proceedings of the International Conference On Information Visualisation. 326-332. DOI: 10.1109/IV.2007.120 |
0.548 |
|
| 2007 |
Wallace G, Hibbs M, Dunham M, Sealfon R, Troyanskaya O, Li K. Scalable, dynamic analysis and visualization for genomic datasets Proceedings - 21st International Parallel and Distributed Processing Symposium, Ipdps 2007; Abstracts and Cd-Rom. DOI: 10.1109/IPDPS.2007.370529 |
0.513 |
|
| 2006 |
Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt SC, Dunham MJ. Global mapping of transposon location. Plos Genetics. 2: e212. PMID 17173485 DOI: 10.1371/Journal.Pgen.0020212 |
0.478 |
|
| 2006 |
Gresham D, Ruderfer DM, Pratt SC, Schacherer J, Dunham MJ, Botstein D, Kruglyak L. Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science (New York, N.Y.). 311: 1932-6. PMID 16527929 DOI: 10.1126/Science.1123726 |
0.595 |
|
| 2004 |
Myers CL, Dunham MJ, Kung SY, Troyanskaya OG. Accurate detection of aneuploidies in array CGH and gene expression microarray data. Bioinformatics (Oxford, England). 20: 3533-43. PMID 15284100 DOI: 10.1093/Bioinformatics/Bth440 |
0.622 |
|
| 2002 |
Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig F, Botstein D. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 16144-9. PMID 12446845 DOI: 10.1073/Pnas.242624799 |
0.605 |
|
| 2000 |
Byrne ME, Barley R, Curtis M, Arroyo JM, Dunham M, Hudson A, Martienssen RA. Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature. 408: 967-71. PMID 11140682 DOI: 10.1038/35050091 |
0.347 |
|
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