| Year |
Citation |
Score |
| 2023 |
Vernon TN, Terrell JR, Albrecht AV, Germann MW, Wilson WD, Poon GMK. Dissection of integrated readout reveals the structural thermodynamics of DNA selection by transcription factors. Structure (London, England : 1993). PMID 38042148 DOI: 10.1016/j.str.2023.11.003 |
0.312 |
|
| 2020 |
Xhani S, Lee S, Kim HM, Wang S, Esaki S, Ha VLT, Khanezarrin M, Fernandez GL, Albrecht AV, Aramini JM, Germann MW, Poon GMK. Intrinsic disorder controls two functionally distinct dimers of the master transcription factor PU.1. Science Advances. 6: eaay3178. PMID 32128405 DOI: 10.1126/Sciadv.Aay3178 |
0.398 |
|
| 2019 |
Owens EA, Huynh HT, Stroeva E, Barman A, Ziabrev K, Paul A, Nguyen SV, Laramie MD, Hamelberg D, Germann MW, Wilson WD, Henary M. Second Generation G-Quadruplex Stabilizing Trimethine Cyanines. Bioconjugate Chemistry. PMID 31518105 DOI: 10.1021/Acs.Bioconjchem.9B00571 |
0.387 |
|
| 2019 |
Ferris ZE, Li Q, Germann MW. Substituting Inosine for Guanosine in DNA: Structural and Dynamic Consequences Natural Product Communications. 14: 1934578X1985003. DOI: 10.1177/1934578X19850032 |
0.363 |
|
| 2018 |
Spring-Connell AM, Evich M, Germann MW. NMR Structure Determination for Oligonucleotides. Current Protocols in Nucleic Acid Chemistry. 72: 7.28.1-7.28.39. PMID 29927124 DOI: 10.1002/Cpnc.48 |
0.399 |
|
| 2018 |
Harika NK, Germann MW, Wilson WD. NMR and Restrained Molecular Dynamics Determination of the Structure of an Aza-Benzimidazole Derivative Complex with the DNA Minor Groove of an -AAGATA- Sequence Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb6Asf/Pdb |
0.398 |
|
| 2018 |
Nguyen SV, Stroeva E, Germann MW. Simplifying DNA NMR spectroscopy by silencing GH8 and AH8 resonances Journal of Molecular Structure. 1166: 344-347. DOI: 10.1016/J.Molstruc.2018.04.049 |
0.423 |
|
| 2017 |
Harika NK, Germann MW, Wilson WD. First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA base pair Sequences. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 29044822 DOI: 10.1002/Chem.201704563 |
0.433 |
|
| 2017 |
Esaki S, Evich MG, Erlitzki N, Germann MW, Poon GMK. Multiple DNA-binding modes for the ETS family transcription factor PU.1. The Journal of Biological Chemistry. PMID 28790174 DOI: 10.1074/Jbc.M117.798207 |
0.408 |
|
| 2017 |
Evich M, Spring-Connell AM, Germann MW. Impact of modified ribose sugars on nucleic acid conformation and function Heterocyclic Communications. 23: 155-165. DOI: 10.1515/Hc-2017-0056 |
0.334 |
|
| 2016 |
Zhang J, Pearson JZ, Gorbet GE, Cölfen H, Germann MW, Brinton MA, Demeler B. Spectral and Hydrodynamic Analysis of West Nile Virus RNA-Protein Interactions by Multiwavelength Sedimentation Velocity in the Analytical Ultracentrifuge. Analytical Chemistry. PMID 27977168 DOI: 10.1021/Acs.Analchem.6B03926 |
0.331 |
|
| 2016 |
Spring-Connell AM, Evich MG, Debelak H, Seela F, Germann MW. Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog. Nucleic Acids Research. PMID 27566150 DOI: 10.1093/Nar/Gkw736 |
0.421 |
|
| 2016 |
Evich M, Spring-Connell AM, Storici F, Germann MW. Structural impact of single ribonucleotides in DNA. Chembiochem : a European Journal of Chemical Biology. PMID 27504600 DOI: 10.1002/Cbic.201600385 |
0.422 |
|
| 2016 |
Harika NK, Paul A, Stroeva E, Chai Y, Boykin DW, Germann MW, Wilson WD. Imino proton NMR guides the reprogramming of A•T specific minor groove binders for mixed base pair recognition. Nucleic Acids Research. PMID 27131382 DOI: 10.1093/Nar/Gkw353 |
0.439 |
|
| 2016 |
Spring-Connell A, Evich M, Seela F, Germann M. Universal Base oligonucleotide structure Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2N5O/Pdb |
0.316 |
|
| 2015 |
Thompson RA, Spring AM, Sheng J, Huang Z, Germann MW. The importance of fitting in: conformational preference of selenium 2' modifications in nucleosides and helical structures. Journal of Biomolecular Structure & Dynamics. 33: 289-97. PMID 24558982 DOI: 10.1080/07391102.2014.880944 |
0.647 |
|
| 2014 |
Chiu HC, Koh KD, Evich M, Lesiak AL, Germann MW, Bongiorno A, Riedo E, Storici F. RNA intrusions change DNA elastic properties and structure. Nanoscale. 6: 10009-17. PMID 24992674 DOI: 10.1039/C4Nr01794C |
0.445 |
|
| 2014 |
Maganti N, Moody TD, Truax AD, Thakkar M, Spring AM, Germann MW, Greer SF. Nonproteolytic roles of 19S ATPases in transcription of CIITApIV genes. Plos One. 9: e91200. PMID 24625964 DOI: 10.1371/Journal.Pone.0091200 |
0.636 |
|
| 2014 |
Portella G, Germann MW, Hud NV, Orozco M. MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents. Journal of the American Chemical Society. 136: 3075-86. PMID 24490755 DOI: 10.1021/Ja410698U |
0.416 |
|
| 2013 |
Nanjunda R, Owens EA, Mickelson L, Dost TL, Stroeva EM, Huynh HT, Germann MW, Henary MM, Wilson WD. Selective G-quadruplex DNA recognition by a new class of designed cyanines. Molecules (Basel, Switzerland). 18: 13588-607. PMID 24192912 DOI: 10.3390/Molecules181113588 |
0.416 |
|
| 2013 |
Davis WG, Basu M, Elrod EJ, Germann MW, Brinton MA. Identification of cis-acting nucleotides and a structural feature in West Nile virus 3'-terminus RNA that facilitate viral minus strand RNA synthesis. Journal of Virology. 87: 7622-36. PMID 23637406 DOI: 10.1128/Jvi.00212-13 |
0.387 |
|
| 2013 |
Rettig M, Germann MW, Wang S, Wilson WD. Molecular basis for sequence-dependent induced DNA bending. Chembiochem : a European Journal of Chemical Biology. 14: 323-31. PMID 23355266 DOI: 10.1002/Cbic.201200706 |
0.451 |
|
| 2013 |
Zhang J, Qu X, Covarrubias M, Germann MW. Insight into the modulation of Shaw2 Kv channels by general anesthetics: structural and functional studies of S4-S5 linker and S6 C-terminal peptides in micelles by NMR. Biochimica Et Biophysica Acta. 1828: 595-601. PMID 23031574 DOI: 10.1016/J.Bbamem.2012.09.025 |
0.512 |
|
| 2013 |
Rettig M, Germann M, Wilson WD, Wang S. NMR Structure of the Self-Complementary 10 mer DNA Oligonucleotide 5'-GGATATATCC-3'. Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lwg/Pdb |
0.387 |
|
| 2013 |
Germann MW, Mishra SH, Santoso Y, Spring AM. Designing HIV-RREIIB RNA binding zinc fingers Zinc Fingers: Structure, Properties, and Applications. 81-100. |
0.735 |
|
| 2012 |
Spring AM, Germann MW. Supercooled aqueous nuclear magnetic resonance using agarose gels. Analytical Biochemistry. 427: 79-81. PMID 22609075 DOI: 10.1016/J.Ab.2012.05.003 |
0.652 |
|
| 2012 |
Germann MW, Johnson CN, Spring AM. Recognition of damaged DNA: structure and dynamic markers. Medicinal Research Reviews. 32: 659-83. PMID 22539108 DOI: 10.1002/Med.20226 |
0.671 |
|
| 2012 |
Rettig M, Germann MW, Ismail MA, Batista-Parra A, Munde M, Boykin DW, Wilson WD. Microscopic rearrangement of bound minor groove binders detected by NMR. The Journal of Physical Chemistry. B. 116: 5620-7. PMID 22530735 DOI: 10.1021/Jp301143E |
0.431 |
|
| 2012 |
Johnson CN, Spring AM, Desai S, Cunningham RP, Germann MW. DNA sequence context conceals α-anomeric lesions. Journal of Molecular Biology. 416: 425-37. PMID 22227386 DOI: 10.1016/J.Jmb.2011.12.051 |
0.702 |
|
| 2011 |
Herberholz J, Mishra SH, Uma D, Germann MW, Edwards DH, Potter K. Non-invasive imaging of neuroanatomical structures and neural activation with high-resolution MRI. Frontiers in Behavioral Neuroscience. 5: 16. PMID 21503138 DOI: 10.3389/Fnbeh.2011.00016 |
0.55 |
|
| 2011 |
Johnson CN, Spring AM, Sergueev D, Shaw BR, Germann MW. Structural basis of the RNase H1 activity on stereo regular borano phosphonate DNA/RNA hybrids. Biochemistry. 50: 3903-12. PMID 21443203 DOI: 10.1021/Bi200083D |
0.703 |
|
| 2011 |
Johnson C, Spring A, Shaw B, Germann M. DNA / RNA Hybrid containing a central stereo specific Rp borano phosphate linkage Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Lar/Pdb |
0.691 |
|
| 2011 |
Nanjunda RK, Liu Y, Wang L, Kumar A, Farahat A, Germann M, Boykin D, Wilson D. Solution Structure of a Novel Heterocyclic Dication Stacked as a Dimer with a Unique Mixed GC/AT Containing Motif Biophysical Journal. 100: 235a. DOI: 10.1016/J.Bpj.2010.12.1497 |
0.421 |
|
| 2009 |
Khan AM, Mishra SH, Germann MW. Cyclic enzymatic solid phase synthesis of isotopically labeled DNA oligonucleotides. Nucleosides, Nucleotides & Nucleic Acids. 28: 1030-41. PMID 20183571 DOI: 10.1080/15257770903362263 |
0.623 |
|
| 2009 |
Mishra SH, Spring AM, Germann MW. Thermodynamic profiling of HIV RREIIB RNA-zinc finger interactions. Journal of Molecular Biology. 393: 369-82. PMID 19646998 DOI: 10.1016/J.Jmb.2009.07.066 |
0.737 |
|
| 2009 |
Zhang J, Spring A, Germann MW. Facilitated assignment of adenine H2 resonances in oligonucleotides using homonuclear long-range couplings. Journal of the American Chemical Society. 131: 5380-1. PMID 19323530 DOI: 10.1021/Ja900771B |
0.66 |
|
| 2009 |
Horowitz ED, Lilavivat S, Holladay BW, Germann MW, Hud NV. Solution structure and thermodynamics of 2',5' RNA intercalation. Journal of the American Chemical Society. 131: 5831-8. PMID 19309071 DOI: 10.1021/Ja810068E |
0.42 |
|
| 2009 |
Mazurek A, Johnson CN, Germann MW, Fishel R. Sequence context effect for hMSH2-hMSH6 mismatch-dependent activation. Proceedings of the National Academy of Sciences of the United States of America. 106: 4177-82. PMID 19237577 DOI: 10.1073/Pnas.0808572106 |
0.377 |
|
| 2009 |
Germann MW, Johnson CN, Spring AM. Unusual DNA structure and DNA damage recognition: Structure and dynamic markers Chimia. 63: 731-736. DOI: 10.2533/Chimia.2009.731 |
0.689 |
|
| 2006 |
Bhattacharji A, Kaplan B, Harris T, Qu X, Germann MW, Covarrubias M. The concerted contribution of the S4-S5 linker and the S6 segment to the modulation of a Kv channel by 1-alkanols. Molecular Pharmacology. 70: 1542-54. PMID 16887933 DOI: 10.1124/Mol.106.026187 |
0.463 |
|
| 2006 |
Mishra SH, Shelley CM, Barrow DJ, Darby MK, Germann MW. Solution structures and characterization of human immunodeficiency virus Rev responsive element IIB RNA targeting zinc finger proteins. Biopolymers. 83: 352-64. PMID 16826557 DOI: 10.1002/Bip.20565 |
0.646 |
|
| 2005 |
Salon J, Chen G, Portilla Y, Germann MW, Huang Z. Synthesis of a 2'-Se-uridine phosphoramidite and its incorporation into oligonucleotides for structural study. Organic Letters. 7: 5645-8. PMID 16321012 DOI: 10.1021/Ol052270Y |
0.385 |
|
| 2004 |
Vlassiouk I, Krasnoslobodtsev A, Smirnov S, Germann M. “Direct” Detection and Separation of DNA Using Nanoporous Alumina Filters Langmuir. 20: 9913-9915. PMID 15518473 DOI: 10.1021/La047959A |
0.375 |
|
| 2004 |
Aramini JM, Cleaver SH, Pon RT, Cunningham RP, Germann MW. Solution structure of a DNA duplex containing an alpha-anomeric adenosine: insights into substrate recognition by endonuclease IV. Journal of Molecular Biology. 338: 77-91. PMID 15050824 DOI: 10.1016/J.Jmb.2004.02.035 |
0.403 |
|
| 2003 |
Shahidullah M, Harris T, Germann MW, Covarrubias M. Molecular features of an alcohol binding site in a neuronal potassium channel. Biochemistry. 42: 11243-52. PMID 14503874 DOI: 10.1021/Bi034738F |
0.331 |
|
| 2001 |
Malin EL, Alaimo MH, Brown EM, Aramini JM, Germann MW, Farrell HM, McSweeney PL, Fox PF. Solution structures of casein peptides: NMR, FTIR, CD, and molecular modeling studies of alphas1-casein, 1-23. Journal of Protein Chemistry. 20: 391-404. PMID 11732691 DOI: 10.1023/A:1012232804665 |
0.332 |
|
| 2001 |
Germann MW, Aramini JM, Kalisch BW, Van de Sande JH. Structural, dynamic, and enzymatic properties of mixed α/β-oligonucleotides containing polarity reversals Nucleosides, Nucleotides and Nucleic Acids. 20: 493-499. PMID 11563065 DOI: 10.1081/Ncn-100002324 |
0.417 |
|
| 2000 |
Aramini JM, Mujeeb A, Ulyanov NB, Germann MW. Conformational dynamics in mixed α/β-oligonucleotides containing polarity reversals: A molecular dynamics study using time-averaged restraints Journal of Biomolecular Nmr. 18: 287-302. PMID 11200523 DOI: 10.1023/A:1026798010342 |
0.337 |
|
| 1999 |
Aramini JM, Germann MW. Solution structure of a DNA·RNA hybrid containing an α-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-αT-5'-5'-GCTC)·r(gagcaccau) Biochemistry. 38: 15448-15458. PMID 10569927 DOI: 10.1021/Bi9915418 |
0.426 |
|
| 1999 |
Alaimo MH, Farrell HM, Germann MW. Conformational analysis of the hydrophobic peptide α(s1)-casein(136-196) Biochimica Et Biophysica Acta - Protein Structure and Molecular Enzymology. 1431: 410-420. PMID 10350616 DOI: 10.1016/S0167-4838(99)00061-8 |
0.335 |
|
| 1998 |
Aramini JM, Germann MW. NMR studies of DNA duplexes containing α-anomeric nucleotides and polarity reversals Biochemistry and Cell Biology. 76: 403-410. PMID 9923709 DOI: 10.1139/Bcb-76-2-3-403 |
0.361 |
|
| 1998 |
Aramini JM, Mujeeb A, Germann MW. NMR solution structures of [d(GCGAAT-3'-3'-αT-5'-5'-CGC)2] and its unmodified control Nucleic Acids Research. 26: 5644-5654. PMID 9837995 DOI: 10.1093/Nar/26.24.5644 |
0.398 |
|
| 1998 |
Germann MW, Kalisch BW, Van De Sande JH. Structure of d(GT)(n)·d(GA)(n) sequences: Formation of parallel stranded duplex DNA Biochemistry. 37: 12962-12970. PMID 9737876 DOI: 10.1021/Bi9726842 |
0.351 |
|
| 1998 |
Germann MW, Kalisch BW, Varnum JM, Vogel HJ, van de Sande JH. NMR spectroscopic and enzymatic studies of DNA hairpins containing mismatches in the EcoRI recognition site Biochemistry and Cell Biology. 76: 391-402. DOI: 10.1139/O98-031 |
0.416 |
|
| 1997 |
Aramini JM, Van De Sande JH, Germann MW. Spectroscopic and thermodynamic studies of DNA duplexes containing α- anomeric C, A, and G nucleotides and polarity reversals: Coexistence of localized parallel and antiparallel DNA Biochemistry. 36: 9715-9725. PMID 9245403 DOI: 10.1021/Bi9706071 |
0.414 |
|
| 1996 |
Germann MW, Kalisch BW, Van De Sande JH. Homooligomeric dA·dU and dA·dT sequences in parallel and antiparallel strand orientation: Consequence of the 5-methyl groups on stability, structure and interaction with the minor groove binding drug HOECHST 33258 Journal of Biomolecular Structure and Dynamics. 13: 953-963. PMID 8832378 DOI: 10.1080/07391102.1996.10508910 |
0.395 |
|
| 1996 |
Aramini JM, Kalisch BW, Pon RT, Van de Sande JH, Germann MW. Structure of a DNA duplex that contains α-anomeric nucleotides and 3'- 3' and 5'-5' phosphodiester linkages: Coexistence of parallel and antiparallel DNA Biochemistry. 35: 9355-9365. PMID 8755713 DOI: 10.1021/Bi960612P |
0.383 |
|
| 1996 |
Kotani H, Germann MW, Andrus A, Vinayak R, Mullah B, Kmiec EB. RNA facilitates RecA-mediated DNA pairing and strand transfer between molecules bearing limited regions of homology Molecular and General Genetics. 250: 626-634. PMID 8676865 DOI: 10.1007/Bf02174450 |
0.445 |
|
| 1995 |
Germann MW, Zhou N, Van de Sande JH, Vogel HJ. [9] Parallel-stranded duplex DNA: An NMR perspective Methods in Enzymology. 261: 207-225. PMID 8569496 DOI: 10.1016/S0076-6879(95)61011-1 |
0.439 |
|
| 1993 |
Zhou N, Germann MW, Van De Sande JH, Pattabiraman N, Vogel HJ. Solution structure of the parallel-stranded hairpin d(T8〈〉C4A8) as determined by two-dimensional NMR Biochemistry. 32: 646-656. PMID 8380706 DOI: 10.1021/Bi00053A033 |
0.412 |
|
| 1990 |
Germann MW, Kalisch BW, Lundberg P, Vogel HJ, van de Sande JH. Perturbation of DNA hairpins containing the EcoRI recognition site by hairpin loops of varying size and composition: Physical (NMR and UV) and enzymatic (EcoRI) studies Nucleic Acids Research. 18: 1489-1498. PMID 2326190 DOI: 10.1093/Nar/18.6.1489 |
0.381 |
|
| 1990 |
Germann MW, Kalisch BW, Pon RT, Van De Sande JH. Length-dependent formation of parallel-stranded DNA in alternating AT segments Biochemistry®. 29: 9426-9432. PMID 2248956 DOI: 10.1021/Bi00492A017 |
0.433 |
|
| 1990 |
Baleja JD, Germann MW, Van de Sande JH, Sykes BD. Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and NOE-based refinement Journal of Molecular Biology. 215: 411-428. PMID 2231713 DOI: 10.1016/S0022-2836(05)80361-4 |
0.396 |
|
| 1990 |
McIntyre DD, Germann MW, Vogel HJ. Conformational analysis and complete assignment of the proton and carbon NMR spectra of ouabain and ouabagenin Canadian Journal of Chemistry. 68: 1263-1270. DOI: 10.1139/V90-195 |
0.327 |
|
| 1989 |
Germann MW, Vogel HJ, Pon RT, Van De Sande JH. Characterization of a parallel-stranded DNA hairpin Biochemistry. 28: 6220-6228. PMID 2789997 DOI: 10.1021/Bi00441A013 |
0.432 |
|
| 1988 |
Van De Sande JH, Ramsing NB, Germann MW, Elhorst W, Kalisch BW, v. Kitzing E, Pon RT, Clegg RC, Jovin TM. Parallel stranded DNA Science. 241: 551-557. PMID 3399890 DOI: 10.1126/Science.3399890 |
0.402 |
|
| 1988 |
Germann MW, Kalisch BW, Van De Sande JH. Relative stability of parallel- and antiparallel-stranded duplex DNA Biochemistry. 27: 8302-8306. PMID 2468357 DOI: 10.1021/Bi00422A002 |
0.437 |
|
| 1987 |
Germann MW, Pon RT, van de Sande JH. A general method for the purification of synthetic oligodeoxyribonucleotides containing strong secondary structure by reversed-phase high-performance liquid chromatography on PRP-1 resin Analytical Biochemistry. 165: 399-405. PMID 3425910 DOI: 10.1016/0003-2697(87)90288-0 |
0.313 |
|
| 1985 |
Germann MW, Schoenwaelder KH, Van De Sande JH. Right- and left-handed (Z) helical conformations of the hairpin d(C-G)5T4(C-G)5 monomer and dimer Biochemistry. 24: 5698-5702. PMID 4084487 DOI: 10.1021/Bi00342A002 |
0.304 |
|
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