Ilya Soifer, Ph.D. - Publications

Affiliations: 
2012 Weizmann Institute of Science, Rehovot, Israel 
Area:
Cell Biology

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 McDaniel JH, Patel V, Olson ND, He HJ, He Z, Schmitt A, Sikkink K, Sedlazeck FJ, Doddapaneni H, Jhangiani SN, Muzny DM, Gingras MC, Mehta H, Paulin LF, Hastie AR, ... ... Soifer I, et al. Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair for somatic benchmarks. Biorxiv : the Preprint Server For Biology. PMID 39345378 DOI: 10.1101/2024.09.18.613544  0.371
2020 Soifer I, Fong NL, Yi N, Ireland AT, Lam I, Sooknah M, Paw JS, Peluso P, Concepcion GT, Rank D, Hastie AR, Jojic V, Ruby JG, Botstein D, Roy MA. Fully Phased Sequence of a Diploid Human Genome Determined from the DNA of a Single Individual. G3 (Bethesda, Md.). PMID 32631951 DOI: 10.1534/G3.119.400995  0.401
2018 Jonas F, Soifer I, Barkai N. A Visual Framework for Classifying Determinants of Cell Size. Cell Reports. 25: 3519-3529.e2. PMID 30566874 DOI: 10.1016/J.Celrep.2018.11.087  0.563
2018 Hendrickson DG, Soifer I, Wranik BJ, Botstein D, Scott McIsaac R. Simultaneous Profiling of DNA Accessibility and Gene Expression Dynamics with ATAC-Seq and RNA-Seq. Methods in Molecular Biology (Clifton, N.J.). 1819: 317-333. PMID 30421411 DOI: 10.1007/978-1-4939-8618-7_15  0.399
2018 Hendrickson DG, Soifer I, Wranik BJ, Kim G, Robles M, Gibney PA, McIsaac RS. A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast. Elife. 7. PMID 30334737 DOI: 10.7554/Elife.39911  0.303
2018 Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, ... ... Soifer I, et al. The maize W22 genome provides a foundation for functional genomics and transposon biology. Nature Genetics. PMID 30061736 DOI: 10.1038/S41588-018-0158-0  0.694
2017 Cao J, Packer J, Waterston R, Trapnell C, Shendure J, Rajaram S, Wu LF, Altschuler SJ, Liang J, O'Brien LE, Eizenberg-Magar I, Rimer J, Friedman N, Metzl-Raz E, Kafri M, ... ... Soifer I, et al. Principles of Systems Biology, No. 21 : Editorial Cell Systems. 5: 158-160. PMID 28957648 DOI: 10.1016/J.Cels.2017.09.005  0.51
2017 Metzl-Raz E, Kafri M, Yaakov G, Soifer I, Gurvich Y, Barkai N. Principles of cellular resource allocation revealed by condition-dependent proteome profiling. Elife. 6. PMID 28857745 DOI: 10.7554/Elife.28034  0.542
2017 Herbst RH, Bar-Zvi D, Reikhav S, Soifer I, Breker M, Jona G, Shimoni E, Schuldiner M, Levy AA, Barkai N. Heterosis as a consequence of regulatory incompatibility. Bmc Biology. 15: 38. PMID 28494792 DOI: 10.1186/S12915-017-0373-7  0.609
2017 Metzl-Raz E, Kafri M, Yaakov G, Soifer I, Gurvich Y, Barkai N. Author response: Principles of cellular resource allocation revealed by condition-dependent proteome profiling Elife. DOI: 10.7554/Elife.28034.022  0.524
2016 Hirsch C, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler ES, et al. Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. The Plant Cell. PMID 27803309 DOI: 10.1105/Tpc.16.00353  0.682
2016 Lewis KN, Soifer I, Melamud E, Roy M, McIsaac RS, Hibbs M, Buffenstein R. Unraveling the message: insights into comparative genomics of the naked mole-rat. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 27364349 DOI: 10.1007/S00335-016-9648-5  0.434
2016 Soifer I, Robert L, Amir A. Single-Cell Analysis of Growth in Budding Yeast and Bacteria Reveals a Common Size Regulation Strategy. Current Biology : Cb. 26: 356-61. PMID 26776734 DOI: 10.1016/J.Cub.2015.11.067  0.353
2015 Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES. High-resolution genetic mapping of maize pan-genome sequence anchors. Nature Communications. 6: 6914. PMID 25881062 DOI: 10.1038/Ncomms7914  0.686
2014 Soifer I, Barkai N. Systematic identification of cell size regulators in budding yeast. Molecular Systems Biology. 10: 761. PMID 25411401 DOI: 10.15252/Msb.20145345  0.552
2013 Avraham N, Soifer I, Carmi M, Barkai N. Increasing population growth by asymmetric segregation of a limiting resource during cell division. Molecular Systems Biology. 9: 656. PMID 23591772 DOI: 10.1038/Msb.2013.13  0.554
2010 Koren A, Soifer I, Barkai N. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Research. 20: 781-90. PMID 20219942 DOI: 10.1101/Gr.102764.109  0.618
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