Omar N. Demerdash, Ph.D. - Publications

2010 University of Wisconsin, Madison, Madison, WI 
General Biophysics, Molecular Biology

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bortnov V, Tonelli M, Lee W, Lin Z, Annis DS, Demerdash ON, Bateman A, Mitchell JC, Ge Y, Markley JL, Mosher DF. Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum. Nature Communications. 10: 5612. PMID 31819058 DOI: 10.1038/S41467-019-13577-5  0.88
2018 Das AK, Demerdash ON, Head-Gordon T. Improvements to the AMOEBA Force Field by Introducing Anisotropic Atomic Polarizability of the Water Molecule. Journal of Chemical Theory and Computation. PMID 30428257 DOI: 10.1021/Acs.Jctc.8B00978  0.8
2016 Albaugh A, Boateng HA, Bradshaw RT, Demerdash ON, Dziedzic J, Mao Y, Margul DT, Swails JM, Zeng Q, Case DA, Eastman PK, Essex JW, Head-Gordon M, Pande VS, Ponder JW, et al. Advanced Potential Energy Surfaces for Molecular Simulation. The Journal of Physical Chemistry. B. PMID 27513316 DOI: 10.1021/Acs.Jpcb.6B06414  0.88
2016 Demerdash ON, Head-Gordon T. Convergence of the Many-Body Expansion for Energy and Forces for Classical Polarizable Models in the Condensed Phase. Journal of Chemical Theory and Computation. PMID 27405002 DOI: 10.1021/Acs.Jctc.6B00335  0.8
2016 Cimermancic P, Weinkam P, Rettenmaier TJ, Bichmann L, Keedy DA, Woldeyes RA, Schneidmann D, Demerdash ON, Mitchell JC, Wells JA, Fraser JS, Sali A. CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. Journal of Molecular Biology. PMID 26854760 DOI: 10.1016/J.Jmb.2016.01.029  0.88
2013 Zhu X, Ericksen SS, Demerdash ON, Mitchell JC. Data-driven models for protein interaction and design. Proteins. 81: 2221-8. PMID 24038640 DOI: 10.1002/Prot.24405  0.88
2013 Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, ... ... Demerdash ON, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356  0.88
2013 Demerdash ON, Mitchell JC. Using physical potentials and learned models to distinguish native binding interfaces from de novo designed interfaces that do not bind. Proteins. 81: 1919-30. PMID 23760773 DOI: 10.1002/Prot.24337  0.88
2012 Demerdash ON, Mitchell JC. Density-cluster NMA: A new protein decomposition technique for coarse-grained normal mode analysis. Proteins. 80: 1766-79. PMID 22434479 DOI: 10.1002/Prot.24072  0.88
2011 Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of Molecular Biology. 414: 289-302. PMID 22001016 DOI: 10.1016/J.Jmb.2011.09.031  0.88
2011 Hendrickson ML, Rao AJ, Demerdash ON, Kalil RE. Expression of nestin by neural cells in the adult rat and human brain. Plos One. 6: e18535. PMID 21490921 DOI: 10.1371/journal.pone.0018535  0.88
2010 Demerdash ON, Buyan A, Mitchell JC. ReplicOpter: a replicate optimizer for flexible docking. Proteins. 78: 3156-65. PMID 20715288 DOI: 10.1002/Prot.22811  0.88
2009 Demerdash ON, Daily MD, Mitchell JC. Structure-based predictive models for allosteric hot spots. Plos Computational Biology. 5: e1000531. PMID 19816556 DOI: 10.1371/Journal.Pcbi.1000531  0.88
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