| Year |
Citation |
Score |
| 2020 |
Corsi F, Lavery R, Laine E, Carbone A. Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties. Plos Computational Biology. 16: e1007624. PMID 32012150 DOI: 10.1371/journal.pcbi.1007624 |
0.354 |
|
| 2019 |
Dans PD, Balaceanu A, Pasi M, Patelli AS, Petkevičiūtė D, Walther J, Hospital A, Bayarri G, Lavery R, Maddocks JH, Orozco M. The static and dynamic structural heterogeneities of B-DNA: extending Calladine-Dickerson rules. Nucleic Acids Research. PMID 31624840 DOI: 10.1093/Nar/Gkz905 |
0.479 |
|
| 2019 |
Frezza E, Lavery R. Internal Coordinate Normal Mode Analysis: A Strategy to Predict Protein Conformational Transitions. The Journal of Physical Chemistry. B. PMID 30665293 DOI: 10.1021/Acs.Jpcb.8B11913 |
0.306 |
|
| 2018 |
Frezza E, Martin J, Lavery R. A molecular dynamics study of adenylyl cyclase: The impact of ATP and G-protein binding. Plos One. 13: e0196207. PMID 29694437 DOI: 10.1371/Journal.Pone.0196207 |
0.305 |
|
| 2017 |
Reymer A, Zakrzewska K, Lavery R. Sequence-dependent response of DNA to torsional stress: a potential biological regulation mechanism. Nucleic Acids Research. PMID 29267977 DOI: 10.1093/Nar/Gkx1270 |
0.48 |
|
| 2017 |
Etheve L, Martin J, Lavery R. Decomposing protein-DNA binding and recognition using simplified protein models. Nucleic Acids Research. 45: 10270-10283. PMID 28973439 DOI: 10.1093/Nar/Gkx627 |
0.471 |
|
| 2017 |
Bednar J, Garcia-Saez I, Boopathi R, Cutter AR, Papai G, Reymer A, Syed SH, Lone IN, Tonchev O, Crucifix C, Menoni H, Papin C, Skoufias DA, Kurumizaka H, Lavery R, et al. Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1. Molecular Cell. 66: 384-397.e8. PMID 28475873 DOI: 10.1016/J.Molcel.2017.04.012 |
0.307 |
|
| 2017 |
Pasi M, Zakrzewska K, Maddocks JH, Lavery R. Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicircles. Nucleic Acids Research. PMID 28180333 DOI: 10.1093/Nar/Gkx092 |
0.394 |
|
| 2016 |
Balaceanu A, Pasi M, Dans PD, Hospital A, Lavery R, Orozco M. The Role of Unconventional Hydrogen Bonds in Determining BII Propensities in B-DNA. The Journal of Physical Chemistry Letters. 21-28. PMID 27935717 DOI: 10.1021/Acs.Jpclett.6B02451 |
0.519 |
|
| 2016 |
Pasi M, Angelov D, Bednar J, Dimitrov S, Lavery R. Extra views on Structure and dynamics of DNA loops on nucleosomes studied with molecular simulations. Nucleus (Austin, Tex.). 0. PMID 27874316 DOI: 10.1080/19491034.2016.1260800 |
0.472 |
|
| 2016 |
Etheve L, Martin J, Lavery R. Protein-DNA interfaces: a molecular dynamics analysis of time-dependent recognition processes for three transcription factors. Nucleic Acids Research. PMID 27658967 DOI: 10.1093/Nar/Gkw841 |
0.481 |
|
| 2016 |
Pasi M, Mornico D, Volant S, Juchet A, Batisse J, Bouchier C, Parissi V, Ruff M, Lavery R, Lavigne M. DNA minicircles clarify the specific role of DNA structure on retroviral integration. Nucleic Acids Research. PMID 27439712 DOI: 10.1093/Nar/Gkw651 |
0.434 |
|
| 2016 |
Pasi M, Lavery R. Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics. Nucleic Acids Research. PMID 27098037 DOI: 10.1093/Nar/Gkw293 |
0.475 |
|
| 2016 |
Dans PD, Danilāne L, Ivani I, Dršata T, Lankaš F, Hospital A, Walther J, Pujagut RI, Battistini F, Gelpí JL, Lavery R, Orozco M. Long-timescale dynamics of the Drew-Dickerson dodecamer. Nucleic Acids Research. PMID 27084952 DOI: 10.1093/Nar/Gkw264 |
0.414 |
|
| 2015 |
Etheve L, Martin J, Lavery R. Dynamics and recognition within a protein-DNA complex: a molecular dynamics study of the SKN-1/DNA interaction. Nucleic Acids Research. PMID 26721385 DOI: 10.1093/Nar/Gkv1511 |
0.47 |
|
| 2015 |
Pasi M, Maddocks JH, Lavery R. Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics. Nucleic Acids Research. 43: 2412-23. PMID 25662221 DOI: 10.1093/Nar/Gkv080 |
0.392 |
|
| 2014 |
Pasi M, Maddocks JH, Beveridge D, Bishop TC, Case DA, Cheatham T, Dans PD, Jayaram B, Lankas F, Laughton C, Mitchell J, Osman R, Orozco M, Pérez A, Petkevi?i?t? D, ... ... Lavery R, et al. μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA. Nucleic Acids Research. 42: 12272-83. PMID 25260586 DOI: 10.1093/Nar/Gku855 |
0.468 |
|
| 2014 |
Dans PD, Faustino I, Battistini F, Zakrzewska K, Lavery R, Orozco M. Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA. Nucleic Acids Research. 42: 11304-20. PMID 25223784 DOI: 10.1093/Nar/Gku809 |
0.357 |
|
| 2014 |
Lavery R, Maddocks JH, Pasi M, Zakrzewska K. Analyzing ion distributions around DNA. Nucleic Acids Research. 42: 8138-49. PMID 24906882 DOI: 10.1093/Nar/Gku504 |
0.375 |
|
| 2013 |
Pasi M, Lavery R, Ceres N. PaLaCe: A Coarse-Grain Protein Model for Studying Mechanical Properties. Journal of Chemical Theory and Computation. 9: 785-93. PMID 26589071 DOI: 10.1021/Ct3007925 |
0.373 |
|
| 2013 |
Meyer S, Jost D, Theodorakopoulos N, Peyrard M, Lavery R, Everaers R. Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations. Biophysical Journal. 105: 1904-14. PMID 24138866 DOI: 10.1016/J.Bpj.2013.09.004 |
0.426 |
|
| 2012 |
Ceres N, Pasi M, Lavery R. A Protein Solvation Model Based on Residue Burial. Journal of Chemical Theory and Computation. 8: 2141-4. PMID 26593844 DOI: 10.1021/Ct3001552 |
0.339 |
|
| 2012 |
Dans PD, Pérez A, Faustino I, Lavery R, Orozco M. Exploring polymorphisms in B-DNA helical conformations. Nucleic Acids Research. 40: 10668-78. PMID 23012264 DOI: 10.1093/nar/gks884 |
0.408 |
|
| 2012 |
Martin J, Lavery R. Arbitrary protein-protein docking targets biologically relevant interfaces. Bmc Biophysics. 5: 7. PMID 22559010 DOI: 10.1186/2046-1682-5-7 |
0.311 |
|
| 2012 |
Wilhelm M, Mukherjee A, Bouvier B, Zakrzewska K, Hynes JT, Lavery R. Multistep drug intercalation: molecular dynamics and free energy studies of the binding of daunomycin to DNA. Journal of the American Chemical Society. 134: 8588-96. PMID 22548344 DOI: 10.1021/Ja301649K |
0.472 |
|
| 2012 |
Zakrzewska K, Lavery R. Towards a molecular view of transcriptional control. Current Opinion in Structural Biology. 22: 160-7. PMID 22296921 DOI: 10.1016/J.Sbi.2012.01.004 |
0.428 |
|
| 2011 |
Bouvier B, Zakrzewska K, Lavery R. Protein-DNA recognition triggered by a DNA conformational switch. Angewandte Chemie (International Ed. in English). 50: 6516-8. PMID 21626631 DOI: 10.1002/Anie.201101417 |
0.505 |
|
| 2011 |
Blanchet C, Pasi M, Zakrzewska K, Lavery R. CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures. Nucleic Acids Research. 39: W68-73. PMID 21558323 DOI: 10.1093/Nar/Gkr316 |
0.323 |
|
| 2010 |
Lavery R, Zakrzewska K, Beveridge D, Bishop TC, Case DA, Cheatham T, Dixit S, Jayaram B, Lankas F, Laughton C, Maddocks JH, Michon A, Osman R, Orozco M, Perez A, et al. A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. Nucleic Acids Research. 38: 299-313. PMID 19850719 DOI: 10.1093/Nar/Gkp834 |
0.489 |
|
| 2009 |
Zakrzewska K, Bouvier B, Michon A, Blanchet C, Lavery R. Protein-DNA binding specificity: a grid-enabled computational approach applied to single and multiple protein assemblies. Physical Chemistry Chemical Physics : Pccp. 11: 10712-21. PMID 20145815 DOI: 10.1039/B910888M |
0.496 |
|
| 2009 |
Lavery R, Moakher M, Maddocks JH, Petkeviciute D, Zakrzewska K. Conformational analysis of nucleic acids revisited: Curves+. Nucleic Acids Research. 37: 5917-29. PMID 19625494 DOI: 10.1093/Nar/Gkp608 |
0.336 |
|
| 2009 |
Bouvier B, Lavery R. A free energy pathway for the interaction of the SRY protein with its binding site on DNA from atomistic simulations. Journal of the American Chemical Society. 131: 9864-5. PMID 19580270 DOI: 10.1021/Ja901761A |
0.485 |
|
| 2009 |
Prévost C, Takahashi M, Lavery R. Deforming DNA: from physics to biology. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1399-404. PMID 19492398 DOI: 10.1002/Cphc.200900253 |
0.477 |
|
| 2009 |
Curuksu J, Zacharias M, Lavery R, Zakrzewska K. Local and global effects of strong DNA bending induced during molecular dynamics simulations. Nucleic Acids Research. 37: 3766-73. PMID 19380377 DOI: 10.1093/Nar/Gkp234 |
0.495 |
|
| 2009 |
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. Plos Computational Biology. 5: e1000267. PMID 19165315 DOI: 10.1371/Journal.Pcbi.1000267 |
0.349 |
|
| 2009 |
Corbin S, Lavery R, Pullman B. The molecular electrostatic potential of DNA: The effect of countercation screening on various allomorphic forms International Journal of Quantum Chemistry. 22: 103-110. DOI: 10.1002/Qua.560220711 |
0.626 |
|
| 2009 |
Lavery R, Cauchy D, De La Luz Rojas O, Pullman A. Molecular electrostatic potential of the b-dna helix. VII. effect of screening by monovalent cations International Journal of Quantum Chemistry. 18: 323-330. DOI: 10.1002/Qua.560180731 |
0.484 |
|
| 2009 |
Lavery R, Pullman B. A theoretical model study of the mechanism of action of the enzyme glyoxylase I International Journal of Quantum Chemistry. 16: 467-474. DOI: 10.1002/Qua.560160732 |
0.485 |
|
| 2009 |
Lavery R, Oliveira MD, Pullman B. A preliminary theoretical study of the acid catalyzed hydration of glyoxal, methylglyoxal, and other simple aldehydes International Journal of Quantum Chemistry. 16: 459-466. DOI: 10.1002/Qua.560160731 |
0.517 |
|
| 2009 |
Lavery R, Pullman A, Pullman B. Model quantum-chemical studies on the reaction between the candidate proximate carcinogen benzo(a)pyrene-7,8-dihydrodiol-9,10-epoxide and guanine International Journal of Quantum Chemistry. 14: 21-34. DOI: 10.1002/Qua.560140707 |
0.531 |
|
| 2008 |
Sacquin-Mora S, Carbone A, Lavery R. Identification of protein interaction partners and protein-protein interaction sites. Journal of Molecular Biology. 382: 1276-89. PMID 18708070 DOI: 10.1016/J.Jmb.2008.08.002 |
0.317 |
|
| 2008 |
Mukherjee A, Lavery R, Bagchi B, Hynes JT. On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes. Journal of the American Chemical Society. 130: 9747-55. PMID 18611009 DOI: 10.1021/Ja8001666 |
0.49 |
|
| 2008 |
Durrieu MP, Lavery R, Baaden M. Interactions between neuronal fusion proteins explored by molecular dynamics. Biophysical Journal. 94: 3436-46. PMID 18212009 DOI: 10.1529/Biophysj.107.123117 |
0.331 |
|
| 2008 |
Deremble C, Lavery R, Zakrzewska K. Protein-DNA recognition: Breaking the combinatorial barrier Computer Physics Communications. 179: 112-119. DOI: 10.1016/J.Cpc.2008.01.033 |
0.452 |
|
| 2007 |
Lavery R, Sacquin-Mora S. Protein mechanics: a route from structure to function. Journal of Biosciences. 32: 891-8. PMID 17914231 DOI: 10.1007/S12038-007-0089-X |
0.347 |
|
| 2007 |
Sacquin-Mora S, Laforet E, Lavery R. Locating the active sites of enzymes using mechanical properties. Proteins. 67: 350-9. PMID 17311346 DOI: 10.1002/Prot.21353 |
0.331 |
|
| 2006 |
Lankas F, Lavery R, Maddocks JH. Kinking occurs during molecular dynamics simulations of small DNA minicircles. Structure (London, England : 1993). 14: 1527-34. PMID 17027501 DOI: 10.1016/J.Str.2006.08.004 |
0.483 |
|
| 2006 |
Cailliez F, Lavery R. Dynamics and stability of E-cadherin dimers. Biophysical Journal. 91: 3964-71. PMID 16980367 DOI: 10.1529/Biophysj.106.087213 |
0.325 |
|
| 2006 |
Lionnet T, Joubaud S, Lavery R, Bensimon D, Croquette V. Wringing out DNA. Physical Review Letters. 96: 178102. PMID 16712339 DOI: 10.1103/Physrevlett.96.178102 |
0.468 |
|
| 2006 |
Sacquin-Mora S, Lavery R. Investigating the local flexibility of functional residues in hemoproteins. Biophysical Journal. 90: 2706-17. PMID 16428284 DOI: 10.1529/Biophysj.105.074997 |
0.352 |
|
| 2005 |
Emanuele E, Zakrzewska K, Markovitsi D, Lavery R, Millié P. Exciton states of dynamic DNA double helices: alternating dCdG sequences. The Journal of Physical Chemistry. B. 109: 16109-18. PMID 16853047 DOI: 10.1021/Jp051833K |
0.345 |
|
| 2005 |
Lavery R. Recognizing DNA. Quarterly Reviews of Biophysics. 38: 339-44. PMID 16515738 DOI: 10.1017/S0033583505004105 |
0.415 |
|
| 2005 |
Dixit SB, Beveridge DL, Case DA, Cheatham TE, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Sklenar H, Thayer KM, Varnai P. Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps. Biophysical Journal. 89: 3721-40. PMID 16169978 DOI: 10.1529/Biophysj.105.067397 |
0.487 |
|
| 2005 |
O'Flanagan RA, Paillard G, Lavery R, Sengupta AM. Non-additivity in protein-DNA binding. Bioinformatics (Oxford, England). 21: 2254-63. PMID 15746285 DOI: 10.1093/bioinformatics/bti361 |
0.333 |
|
| 2005 |
Lavery R. Course 1 DNA structure, dynamics and recognition Les Houches Summer School Proceedings. 82: 1-40. DOI: 10.1016/S0924-8099(05)80028-9 |
0.313 |
|
| 2004 |
Paillard G, Deremble C, Lavery R. Looking into DNA recognition: zinc finger binding specificity. Nucleic Acids Research. 32: 6673-82. PMID 15613596 DOI: 10.1093/Nar/Gkh1003 |
0.461 |
|
| 2004 |
Navizet I, Cailliez F, Lavery R. Probing protein mechanics: residue-level properties and their use in defining domains. Biophysical Journal. 87: 1426-35. PMID 15345525 DOI: 10.1529/Biophysj.104.042085 |
0.684 |
|
| 2004 |
Beveridge DL, Barreiro G, Byun KS, Case DA, Cheatham TE, Dixit SB, Giudice E, Lankas F, Lavery R, Maddocks JH, Osman R, Seibert E, Sklenar H, Stoll G, Thayer KM, et al. Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps. Biophysical Journal. 87: 3799-813. PMID 15326025 DOI: 10.1529/Biophysj.104.045252 |
0.446 |
|
| 2004 |
Navizet I, Lavery R, Jernigan RL. Myosin flexibility: structural domains and collective vibrations. Proteins. 54: 384-93. PMID 14747987 DOI: 10.1002/Prot.10476 |
0.664 |
|
| 2004 |
Paillard G, Lavery R. Analyzing protein-DNA recognition mechanisms. Structure (London, England : 1993). 12: 113-22. PMID 14725771 DOI: 10.1016/J.Str.2003.11.022 |
0.492 |
|
| 2003 |
Bastard K, Thureau A, Lavery R, Prévost C. Docking macromolecules with flexible segments. Journal of Computational Chemistry. 24: 1910-20. PMID 14515373 DOI: 10.1002/Jcc.10329 |
0.408 |
|
| 2003 |
Giudice E, Lavery R. Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations. Journal of the American Chemical Society. 125: 4998-9. PMID 12708848 DOI: 10.1021/Ja034095R |
0.46 |
|
| 2003 |
Giudice E, Várnai P, Lavery R. Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations. Nucleic Acids Research. 31: 1434-43. PMID 12595551 DOI: 10.1093/Nar/Gkg239 |
0.46 |
|
| 2003 |
Harvey SC, Wang C, Teletchea S, Lavery R. Motifs in nucleic acids: molecular mechanics restraints for base pairing and base stacking. Journal of Computational Chemistry. 24: 1-9. PMID 12483670 DOI: 10.1002/Jcc.10173 |
0.413 |
|
| 2003 |
Bouvier B, Dognon JP, Lavery R, Markovitsi D, Millié P, Onidas D, Zakrzewska K. Influence of conformational dynamics on the exciton states of DNA oligomers Journal of Physical Chemistry B. 107: 13512-13522. DOI: 10.1021/Jp036164U |
0.397 |
|
| 2002 |
Várnai P, Djuranovic D, Lavery R, Hartmann B. Alpha/gamma transitions in the B-DNA backbone. Nucleic Acids Research. 30: 5398-406. PMID 12490708 DOI: 10.1093/Nar/Gkf680 |
0.4 |
|
| 2002 |
Várnai P, Lavery R. Base flipping in DNA: pathways and energetics studied with molecular dynamic simulations. Journal of the American Chemical Society. 124: 7272-3. PMID 12071727 DOI: 10.1021/Ja025980X |
0.47 |
|
| 2002 |
Giudice E, Lavery R. Simulations of nucleic acids and their complexes. Accounts of Chemical Research. 35: 350-7. PMID 12069619 DOI: 10.1021/Ar010023Y |
0.367 |
|
| 2002 |
Lavery R, Lebrun A, Allemand JF, Bensimon D, Croquette V. Structure and mechanics of single biomolecules: Experiment and simulation Journal of Physics Condensed Matter. 14: R383-R414. DOI: 10.1088/0953-8984/14/14/202 |
0.377 |
|
| 2001 |
Giudice E, Várnai P, Lavery R. Energetic and conformational aspects of A:T base-pair opening within the DNA double helix. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 2: 673-7. PMID 23686902 DOI: 10.1002/1439-7641(20011119)2:11<673::Aid-Cphc673>3.0.Co;2-S |
0.426 |
|
| 2001 |
Lafontaine I, Lavery R. High-speed molecular mechanics searches for optimal DNA interaction sites. Combinatorial Chemistry & High Throughput Screening. 4: 707-17. PMID 11812263 DOI: 10.2174/1386207013330698 |
0.435 |
|
| 2001 |
Lebrun A, Lavery R, Weinstein H. Modeling multi-component protein-DNA complexes: the role of bending and dimerization in the complex of p53 dimers with DNA. Protein Engineering. 14: 233-43. PMID 11391015 DOI: 10.1093/Protein/14.4.233 |
0.479 |
|
| 2000 |
Bertucat G, Lavery R, Prévost C. A Mechanism for RecA-Promoted Sequence Homology Recognition and Strand Exchange Between Single-Stranded DNA and Duplex DNA, via Triple-Helical Intermediates. Journal of Biomolecular Structure & Dynamics. 17: 147-53. PMID 22607418 DOI: 10.1080/07391102.2000.10506615 |
0.499 |
|
| 2000 |
Lafontaine I, Lavery R. ADAPT: a molecular mechanics approach for studying the structural properties of long DNA sequences. Biopolymers. 56: 292-310. PMID 11754342 DOI: 10.1002/1097-0282(2000)56:4<292::Aid-Bip10028>3.0.Co;2-9 |
0.492 |
|
| 2000 |
Lafontaine I, Lavery R. Optimization of nucleic acid sequences Biophysical Journal. 79: 680-685. PMID 10920002 DOI: 10.1016/S0006-3495(00)76326-0 |
0.431 |
|
| 2000 |
Ayadi L, Coulombeau C, Lavery R. The impact of abasic sites on DNA flexibility Journal of Biomolecular Structure and Dynamics. 17: 645-653. PMID 10698102 DOI: 10.1080/07391102.2000.10506555 |
0.466 |
|
| 2000 |
Bertucat G, Lavery R, Prévost C. A mechanism for RecA-promoted sequence homology recognition and strand exchange between single-stranded DNA and duplex DNA, via triple-helical intermediates Journal of Biomolecular Structure and Dynamics. 17: 147-153. DOI: 10.1080/07391102.2000.10506615 |
0.368 |
|
| 2000 |
Rohs R, Sklenar H, Lavery R, Röder B. Methylene blue binding to DNA with alternating GC base sequence: A modeling study Journal of the American Chemical Society. 122: 2860-2866. DOI: 10.1021/ja992966k |
0.336 |
|
| 1999 |
Lavery R, Lebrun A. Modelling DNA stretching for physics and biology Genetica. 106: 75-84. PMID 10710712 DOI: 10.1023/A:1003776827836 |
0.496 |
|
| 1999 |
Ayadi L, Coulombeau C, Lavery R. Abasic sites in duplex DNA: Molecular modeling of sequence-dependent effects on conformation Biophysical Journal. 77: 3218-3226. PMID 10585943 DOI: 10.1016/S0006-3495(99)77152-3 |
0.482 |
|
| 1999 |
Ayadi L, Jourdan M, Coulombeau C, Garcia J, Lavery R. Experimental and theoretical studies of the conformational perturbations induced by an abasic site Journal of Biomolecular Structure and Dynamics. 17: 245-257. PMID 10563574 DOI: 10.1080/07391102.1999.10508357 |
0.424 |
|
| 1999 |
Bruant N, Flatters D, Lavery R, Genest D. From atomic to mesoscopic descriptions of the internal dynamics of DNA Biophysical Journal. 77: 2366-2376. PMID 10545340 DOI: 10.1016/S0006-3495(99)77074-8 |
0.44 |
|
| 1999 |
Bertucat G, Lavery R, Prévost C. A molecular model for RecA-promoted strand exchange via parallel triple- stranded helices Biophysical Journal. 77: 1562-1576. PMID 10465767 DOI: 10.1016/S0006-3495(99)77004-9 |
0.485 |
|
| 1999 |
Lafontaine I, Lavery R. Collective variable modelling of nucleic acids Current Opinion in Structural Biology. 9: 170-176. PMID 10322207 DOI: 10.1016/S0959-440X(99)80024-4 |
0.335 |
|
| 1999 |
Rohs R, Etchebest C, Lavery R. Unraveling proteins: A molecular mechanics study Biophysical Journal. 76: 2760-2768. PMID 10233091 DOI: 10.1016/S0006-3495(99)77429-1 |
0.326 |
|
| 1999 |
Lebrun A, Lavery R. Modeling DNA deformations induced by minor groove binding proteins Biopolymers. 49: 341-353. PMID 10101970 DOI: 10.1002/(Sici)1097-0282(19990415)49:5<341::Aid-Bip1>3.0.Co;2-C |
0.465 |
|
| 1999 |
Zakrzewska K, Lavery R. Chapter 12 Modelling protein-DNA interactions Theoretical and Computational Chemistry. 8: 441-483. DOI: 10.1016/S1380-7323(99)80087-9 |
0.303 |
|
| 1999 |
Strick T, Allemand JF, Bensimon D, Lavery R, Croquette V. Phase coexistence in a single DNA molecule Physica a: Statistical Mechanics and Its Applications. 263: 392-404. DOI: 10.1016/S0378-4371(98)00540-8 |
0.412 |
|
| 1998 |
Lebrun A, Lavery R. Modeling the mechanics of a DNA oligomer Journal of Biomolecular Structure and Dynamics. 16: 593-604. PMID 10052616 DOI: 10.1080/07391102.1998.10508272 |
0.475 |
|
| 1998 |
Bertucat G, Lavery R, Prévost C. A model for parallel triple helix formation by RecA: Single-strand association with a homologous duplex via the minor groove Journal of Biomolecular Structure and Dynamics. 16: 535-546. PMID 10052612 DOI: 10.1080/07391102.1998.10508268 |
0.484 |
|
| 1998 |
Allemand JF, Bensimon D, Lavery R, Croquette V. Stretched and overwound DNA forms a Pauling-like structure with exposed bases Proceedings of the National Academy of Sciences of the United States of America. 95: 14152-14157. PMID 9826669 DOI: 10.1073/Pnas.95.24.14152 |
0.48 |
|
| 1998 |
Flatters D, Lavery R. Sequence-dependent dynamics of TATA-box binding sites Biophysical Journal. 75: 372-381. PMID 9649394 DOI: 10.1016/S0006-3495(98)77521-6 |
0.42 |
|
| 1997 |
Lebrun A, Lavery R. Unusual DNA conformations Current Opinion in Structural Biology. 7: 348-354. PMID 9204276 DOI: 10.1016/S0959-440X(97)80050-4 |
0.46 |
|
| 1997 |
Flatters D, Young M, Beveridge DL, Lavery R. Conformational properties of the TATA-box binding sequence of DNA. Journal of Biomolecular Structure & Dynamics. 14: 757-65. PMID 9195344 DOI: 10.1080/07391102.1997.10508178 |
0.502 |
|
| 1997 |
Prévost C, Boudvillain M, Beudaert P, Leng M, Lavery R, Vovelle F. Distortions of the DNA double helix induced by 1,3-trans- diamminedichloroplatinum(II)-intrastrand cross-link: An internal coordinate molecular modeling study Journal of Biomolecular Structure and Dynamics. 14: 703-714. PMID 9195339 DOI: 10.1080/07391102.1997.10508173 |
0.405 |
|
| 1997 |
Lebrun A, Shakked Z, Lavery R. Local DNA stretching mimics the distortion caused by the TATA box-binding protein Proceedings of the National Academy of Sciences of the United States of America. 94: 2993-2998. PMID 9096334 DOI: 10.1073/Pnas.94.7.2993 |
0.49 |
|
| 1997 |
Bernet J, Zakrzewska K, Lavery R. Modelling base pair opening: The role of helical twist Journal of Molecular Structure: Theochem. 398: 473-482. DOI: 10.1016/S0166-1280(96)04974-3 |
0.452 |
|
| 1997 |
Gabb HA, Prévost C, Bertucat G, Robert CH, Lavery R. Collective-variable Monte Carlo simulation of DNA Journal of Computational Chemistry. 18: 2001-2011. DOI: 10.1002/(Sici)1096-987X(199712)18:16<2001::Aid-Jcc5>3.0.Co;2-P |
0.37 |
|
| 1997 |
Flatters D, Zakrzewska K, Lavery R. Internal coordinate modeling of DNA: Force field comparisons Journal of Computational Chemistry. 18: 1043-1055. DOI: 10.1002/(Sici)1096-987X(199706)18:8<1043::Aid-Jcc8>3.0.Co;2-T |
0.385 |
|
| 1996 |
Hartmann B, Lavery R. DNA structural forms Quarterly Reviews of Biophysics. 29: 309-368. PMID 9080547 DOI: 10.1017/S0033583500005874 |
0.484 |
|
| 1996 |
Lebrun A, Lavery R. Modelling extreme stretching of DNA Nucleic Acids Research. 24: 2260-2267. PMID 8710494 DOI: 10.1093/Nar/24.12.2260 |
0.471 |
|
| 1996 |
Sanghani SR, Zakrzewska K, Harvey SC, Lavery R. Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature. Nucleic Acids Research. 24: 1632-7. PMID 8649979 DOI: 10.1093/Nar/24.9.1632 |
0.376 |
|
| 1996 |
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy JL, Chatenay D, Caron F. DNA: an extensible molecule. Science (New York, N.Y.). 271: 792-4. PMID 8628993 DOI: 10.1126/Science.271.5250.792 |
0.453 |
|
| 1995 |
Lebrun A, Lavery R. Modeling a strand exchange tetraplex conformation Journal of Biomolecular Structure and Dynamics. 13: 459-464. PMID 8825725 DOI: 10.1080/07391102.1995.10508855 |
0.489 |
|
| 1995 |
Lavery R, Zakrzewska K, Sklenar H. JUMNA (junction minimisation of nucleic acids) Computer Physics Communications. 91: 135-158. DOI: 10.1016/0010-4655(95)00046-I |
0.317 |
|
| 1995 |
Gabb HA, Lavery R, Prévost C. Efficient conformational space sampling for nucleosides using internal coordinate Monte Carlo simulations and a modified furanose description Journal of Computational Chemistry. 16: 667-680. DOI: 10.1002/Jcc.540160603 |
0.32 |
|
| 1994 |
Stofer E, Lavery R. Measuring the geometry of DNA grooves Biopolymers. 34: 337-346. PMID 8161709 DOI: 10.1002/Bip.360340305 |
0.443 |
|
| 1994 |
Tuffery P, Etchebest C, Popot J-, Lavery R. Prediction of the positioning of the seven transmembrane α-helices of bacteriorhodopsin: A molecular simulation study Journal of Molecular Biology. 236: 1105-1122. PMID 8120890 DOI: 10.1016/0022-2836(94)90015-9 |
0.358 |
|
| 1994 |
Lavery R, Hartmann B. Modelling DNA conformational mechanics Biophysical Chemistry. 50: 33-45. PMID 8011939 DOI: 10.1016/0301-4622(94)85018-6 |
0.495 |
|
| 1994 |
Sanghani SR, Lavery R. Theoretical studies of DNA-RNA hybrid conformations. Nucleic Acids Research. 22: 1444-9. PMID 7514787 DOI: 10.1093/Nar/22.8.1444 |
0.357 |
|
| 1993 |
Prévost C, Louise-May S, Ravishanker G, Lavery R, Beveridge DL. Persistence analysis of the static and dynamical helix deformations of DNA oligonucleotides: application to the crystal structure and molecular dynamics simulation of d(CGCGAATTCGCG)2. Biopolymers. 33: 335-50. PMID 8461448 DOI: 10.1016/0263-7855(92)80019-A |
0.4 |
|
| 1993 |
Tufféry P, Lavery R. Packing and recognition of protein structural elements: A new approach applied to the 4‐helix bundle of myohemerythrin Proteins. 15: 413-425. PMID 8460111 DOI: 10.1002/Prot.340150408 |
0.36 |
|
| 1993 |
Ouali M, Letellier R, Adnet F, Liquier J, Sun JS, Lavery R, Taillandier E. A possible family of B-like triple helix structures: Comparison with the Arnott A-like triple helix Biochemistry. 32: 2098-2103. PMID 8448168 DOI: 10.1021/Bi00059A030 |
0.342 |
|
| 1993 |
Hartmann B, Piazzola D, Lavery R. BI - BII transitions in B-DNA Nucleic Acids Research. 21: 561-568. PMID 8441668 DOI: 10.1093/Nar/21.3.561 |
0.464 |
|
| 1993 |
El-Kettani MAE, Zakrzewska K, Durup J, Lavery R. An analysis of the conformational paths of citrate synthase. Proteins. 16: 393-407. PMID 8356034 DOI: 10.1002/Prot.340160408 |
0.319 |
|
| 1993 |
Poltev VI, Smirnov SL, Issarafutdinova OV, Lavery R. Conformations of DNA duplexes containing 8-oxoguanine. Journal of Biomolecular Structure & Dynamics. 11: 293-301. PMID 8286057 DOI: 10.1080/07391102.1993.10508727 |
0.335 |
|
| 1993 |
Chomilier J, Sun JS, Collier DA, Garestier T, Hélène C, Lavery R. A computational and experimental study of the bending induced at a double-triple helix junction. Biophysical Chemistry. 45: 143-52. PMID 1286149 DOI: 10.1016/0301-4622(92)87006-5 |
0.493 |
|
| 1993 |
Zakrzewska K, Poltev VI, Oguey C, Lavery R. Symmetry reduction in homopolymeric DNA: implications for DNA fine structure Journal of Molecular Structure-Theochem. 286: 219-229. DOI: 10.1016/0166-1280(93)87165-A |
0.497 |
|
| 1993 |
Kozelka J, Savinelli R, Berthier G, Flament JP, Lavery R. Force field for platinum binding to adenine Journal of Computational Chemistry. 14: 45-53. DOI: 10.1002/Jcc.540140109 |
0.6 |
|
| 1992 |
Sun JS, Lavery R, Chomilier J, Zakrzewska K, Montenay-Garestier T, Hélène C. Theoretical study of ethidium intercalation in triple-stranded DNA and at triplex-duplex junctions. Journal of Biomolecular Structure & Dynamics. 9: 425-436. PMID 1815636 DOI: 10.1080/07391102.1991.10507926 |
0.475 |
|
| 1992 |
Poncin M, Hartmann B, Lavery R. Conformational sub-states in B-DNA. Journal of Molecular Biology. 226: 775-794. PMID 1507226 DOI: 10.1016/0022-2836(92)90632-T |
0.437 |
|
| 1992 |
Poncin M, Piazzola D, Lavery R. DNA flexibility as a function of allomorphic conformation and of base sequence. Biopolymers. 32: 1077-1103. PMID 1420973 DOI: 10.1002/Bip.360320817 |
0.504 |
|
| 1992 |
Lavery R, Zakrzewska K, Sun JS, Harvey SC. A comprehensive classification of nucleic acid structural families based on strand direction and base pairing. Nucleic Acids Research. 20: 5011-6. PMID 1383936 DOI: 10.1093/Nar/20.19.5011 |
0.396 |
|
| 1992 |
Mauffret O, Hartmann B, Convert O, Lavery R, Fermandjian S. The fine structure of two DNA dodecamers containing the cAMP responsive element sequence and its inverse: Nuclear magnetic resonance and molecular simulation studies Journal of Molecular Biology. 227: 852-875. PMID 1328653 DOI: 10.1016/0022-2836(92)90227-B |
0.405 |
|
| 1992 |
Sun J, Lavery R. Strand orientation of [α]‐oligodeoxynucleotides in triple helix structures: Dependence on nucleotide sequence Journal of Molecular Recognition. 5: 93-98. PMID 1298305 DOI: 10.1002/Jmr.300050304 |
0.387 |
|
| 1991 |
Tuffery P, Etchebest C, Hazout S, Lavery R. A new approach to the rapid determination of protein side chain conformations. Journal of Biomolecular Structure & Dynamics. 8: 1267-1289. PMID 1892586 DOI: 10.1080/07391102.1991.10507882 |
0.331 |
|
| 1991 |
Sun JS, Mergny JL, Garestier TM, Lavery R, Hélène C. Triple helix structures: Sequence dependence, flexibility and mismatch effects Journal of Biomolecular Structure and Dynamics. 9: 411-424. PMID 1815635 DOI: 10.1080/07391102.1991.10507925 |
0.438 |
|
| 1991 |
Briki F, Ramstein J, Lavery R, Genest D. Evidence for the stochastic nature of base pair opening in DNA: a Brownian dynamics simulation Journal of the American Chemical Society. 113: 2490-2493. DOI: 10.1021/Ja00007A023 |
0.421 |
|
| 1990 |
Ramstein J, Lavery R. Base pair opening pathways in B-DNA. Journal of Biomolecular Structure & Dynamics. 7: 915-933. PMID 2310523 DOI: 10.1080/07391102.1990.10508532 |
0.47 |
|
| 1990 |
Swaminathan S, Ravishanker G, Beveridge DL, Lavery R, Etchebest C, Sklenar H. Conformational and helicoidal analysis of the molecular dynamics of proteins: "curves," dials and windows for a 50 psec dynamic trajectory of BPTI. Proteins. 8: 179-93. PMID 2235996 DOI: 10.1002/Prot.340080208 |
0.364 |
|
| 1989 |
Hartmann B, Malfoy B, Lavery R. Theoretical prediction of base sequence effects in DNA. Experimental reactivity of Z-DNA and B-Z transition enthalpies. Journal of Molecular Biology. 207: 433-44. PMID 2754731 DOI: 10.1016/0022-2836(89)90265-9 |
0.389 |
|
| 1989 |
Ravishanker G, Swaminathan S, Beveridge DL, Lavery R, Sklenar H. Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows. Journal of Biomolecular Structure & Dynamics. 6: 669-99. PMID 2619934 DOI: 10.1080/07391102.1989.10507729 |
0.465 |
|
| 1989 |
Lavery R, Sklenar H. Defining the structure of irregular nucleic acids: conventions and principles. Journal of Biomolecular Structure & Dynamics. 6: 655-667. PMID 2619933 DOI: 10.1080/07391102.1989.10507728 |
0.374 |
|
| 1989 |
Hartmann B, Lavery R. The conformation and stability of ribonucleic acids: Modeling base sequence effects in double stranded helices Journal of Biomolecular Structure and Dynamics. 7: 363-380. PMID 2604910 DOI: 10.1080/07391102.1989.10507778 |
0.389 |
|
| 1989 |
Sun JS, François JC, Lavery R, Saison-Behmoaras T, Montenay-Garestier T, Thuong NT, Hélène C. Sequence-targeted cleavage of nucleic acids by oligo-alpha-thymidylate-phenanthroline conjugates: parallel and antiparallel double helices are formed with DNA and RNA, respectively. Biochemistry. 27: 6039-45. PMID 2461219 DOI: 10.1021/Bi00416A032 |
0.341 |
|
| 1988 |
Harvey SC, Luo J, Lavery R. DNA stem-loop structures in oligopurine-oligopyrimidine triplexes. Nucleic Acids Research. 16: 11795-809. PMID 3211749 DOI: 10.1093/Nar/16.24.11795 |
0.37 |
|
| 1988 |
Ramstein J, Lavery R. Energetic coupling between DNA bending and base pair opening. Proceedings of the National Academy of Sciences of the United States of America. 85: 7231-5. PMID 3174629 DOI: 10.1073/Pnas.85.19.7231 |
0.484 |
|
| 1988 |
Lavery R, Sklenar H. The Definition of Generalized Helicoidal Parameters and of Axis Curvature for Irregular Nucleic Acids Journal of Biomolecular Structure & Dynamics. 6: 63-91. PMID 2482765 DOI: 10.1080/07391102.1988.10506483 |
0.32 |
|
| 1987 |
Zakrzewska K, Lavery R, Pullman B. A theoretical study of the sequence specificity in binding of lexitropsins to B-DNA. Journal of Biomolecular Structure & Dynamics. 4: 833-43. PMID 2855924 DOI: 10.1080/07391102.1987.10507681 |
0.635 |
|
| 1986 |
Zakrzewska K, Lavery R, Pullman B. Theoretical studies on the interaction of proteins and nucleic acid. II. The binding of alpha-helix to B-DNA. Biophysical Chemistry. 25: 201-13. PMID 3814753 DOI: 10.1016/0301-4622(86)87011-9 |
0.611 |
|
| 1986 |
Lavery R, Zakrzewska K, Pullman B. Binding of non-intercalating antibiotics to B-DNA: a theoretical study taking into account nucleic acid flexibility. Journal of Biomolecular Structure & Dynamics. 3: 1155-70. PMID 3271428 DOI: 10.1080/07391102.1986.10508492 |
0.631 |
|
| 1986 |
Lavery R, Sklenar H, Zakrzewska K, Pullman B. The flexibility of the nucleic acids: (II). The calculation of internal energy and applications to mononucleotide repeat DNA. Journal of Biomolecular Structure & Dynamics. 3: 989-1014. PMID 3271422 DOI: 10.1080/07391102.1986.10508478 |
0.613 |
|
| 1986 |
Sklenar H, Lavery R, Pullman B. The flexibility of the nucleic acids: (I). "SIR", a novel approach to the variation of polymer geometry in constrained systems. Journal of Biomolecular Structure & Dynamics. 3: 967-87. PMID 3271421 DOI: 10.1080/07391102.1986.10508477 |
0.515 |
|
| 1986 |
Lavery R, Sklenar H, Pullman B. The flexibility of the nucleic acids: (III). The interaction of an aliphatic diamine, putrescine, with flexible B-DNA. Journal of Biomolecular Structure & Dynamics. 3: 1015-31. PMID 3271411 DOI: 10.1080/07391102.1986.10508479 |
0.642 |
|
| 1985 |
Lavery R, Pullman B. The dependence of the surface electrostatic potential of B-DNA on environmental factors. Journal of Biomolecular Structure & Dynamics. 2: 1021-32. PMID 3916934 DOI: 10.1080/07391102.1985.10507618 |
0.575 |
|
| 1984 |
Zakrzewska K, Lavery R, Pullman B. The solvation contribution to the binding energy of DNA with non-intercalating antibiotics. Nucleic Acids Research. 12: 6559-74. PMID 6089121 DOI: 10.1093/Nar/12.16.6559 |
0.589 |
|
| 1984 |
Furois‐Corbin S, Pullman B, Lavery R. Effect of nucleic acid flexibility upon ASIF (accessible surface integrated field). Possible significance for biochemical reactivity exemplified by aflatoxin B1 binding International Journal of Quantum Chemistry. 26: 273-286. DOI: 10.1002/Qua.560260729 |
0.63 |
|
| 1984 |
Lavery R, Zakrzewska K, Pullman A. Optimized monopole expansions for the representation of the electrostatic properties of the nucleic acids Journal of Computational Chemistry. 5: 363-373. DOI: 10.1002/Jcc.540050414 |
0.379 |
|
| 1983 |
Lavery R, Pullman A, Pullman B. The electrostatic field of the component units of DNA and its relationship to hydration. Biophysical Chemistry. 17: 75-86. PMID 6824764 DOI: 10.1016/0301-4622(83)87016-1 |
0.587 |
|
| 1983 |
Zakrzewska K, Lavery R, Pullman B. Theoretical studies of the selective binding to DNA of two non-intercalating ligands: netropsin and SN 18071. Nucleic Acids Research. 11: 8825-39. PMID 6324104 DOI: 10.1093/Nar/11.24.8825 |
0.62 |
|
| 1983 |
Pullman A, Pullman B, Lavery R. Molecular electrostatic potential versus field. Significance for DNA and its constituents Journal of Molecular Structure-Theochem. 93: 85-91. DOI: 10.1016/0022-2860(83)90389-7 |
0.439 |
|
| 1983 |
Corbin S, Lavery R, Pullman B. Molecular electrotatic potential of a triple stranded helix: Poly(dT)·poly(dA)·poly(dT) International Journal of Quantum Chemistry. 23: 1451-1461. DOI: 10.1002/Qua.560230427 |
0.42 |
|
| 1982 |
Lavery R, Pullman B. The electrostatic field of DNA: the role of the nucleic acid conformation. Nucleic Acids Research. 10: 4383-95. PMID 7122241 DOI: 10.1093/Nar/10.14.4383 |
0.639 |
|
| 1982 |
Lavery R, Pullman B, Zakrzewska K. Intrinsic electrostatic properties and base sequence effects in the structure of oligonucleotides. Biophysical Chemistry. 15: 343-51. PMID 7115887 DOI: 10.1016/0301-4622(82)80017-3 |
0.547 |
|
| 1982 |
Lavery R, Pullman B. The effects of countercation screening on the electrostatic potential of DNA. The rôle of the nucleic acid conformation. Febs Letters. 142: 271-4. PMID 7106290 DOI: 10.1016/0014-5793(82)80150-6 |
0.572 |
|
| 1982 |
Pullman B, Lavery R, Pullman A. Two aspects of DNA polymorphism and microheterogeneity: molecular electrostatic potential and steric accessibility. European Journal of Biochemistry / Febs. 124: 229-38. PMID 7094914 DOI: 10.1111/J.1432-1033.1982.Tb06582.X |
0.649 |
|
| 1982 |
Corbin S, Lavery R, Pullman B. The molecular electrostatic potential and steric accessibility of double-helical A-RNA. Biochimica Et Biophysica Acta. 698: 86-92. PMID 6180767 DOI: 10.1016/0167-4781(82)90188-9 |
0.57 |
|
| 1982 |
Lavery R, Etchebest C, Pullman A. Calculation of the molecular electrostatic potential from a multipole expansion based on localized orbitals Chemical Physics Letters. 85: 266-270. DOI: 10.1016/0009-2614(82)80290-X |
0.314 |
|
| 1982 |
Lavery R, Pullman A, Pullman B. The electrostatic field of B-DNA Theoretica Chimica Acta. 62: 93-106. DOI: 10.1007/Bf00581476 |
0.591 |
|
| 1982 |
Etchebest C, Lavery R, Pullman A. The calculation of molecular electrostatic potential from a multipole expansion based on localized orbitals and developed at their centroids: Accuracy and applicability for macromolecular computations Theoretica Chimica Acta. 62: 17-28. DOI: 10.1007/Bf00551050 |
0.352 |
|
| 1981 |
Lavery R, Pullman B. The molecular electrostatic potential and steric accessibility of poly (dI.dC). Comparison with poly (dG.dC). Nucleic Acids Research. 9: 7041-51. PMID 7335499 DOI: 10.1093/Nar/9.24.7041 |
0.588 |
|
| 1981 |
Lavery R, Pullman B, Corbin S. The molecular electrostatic potential and steric accessibility of poly (dA-dT). poly (dA-dT) in various conformations: B-DNA, D-DNA and 'alternating-B' DNA. Nucleic Acids Research. 9: 6539-52. PMID 7322922 DOI: 10.1093/Nar/9.23.6539 |
0.641 |
|
| 1981 |
Lavery R, Pullman B. The molecular electrostatic potential and steric accessibility of A-DNA. Nucleic Acids Research. 9: 4677-88. PMID 7301586 DOI: 10.1007/Bf00549607 |
0.65 |
|
| 1981 |
Lavery R, Pullman B. The molecular electrostatic potential, steric accessibility and hydration of Dickerson's B-DNA dodecamer d(CpGpCpGpApApTpTpCpGpCpG). Nucleic Acids Research. 9: 3765-77. PMID 7279672 DOI: 10.1093/Nar/9.15.3765 |
0.643 |
|
| 1981 |
Lavery R, Corbin S, Pullman A. The electrostatic molecular potential of tRNAPhe. V. The influence of counterion binding on the potential and the steric accessibility International Journal of Quantum Chemistry. 20: 171-183. DOI: 10.1002/Qua.560200715 |
0.308 |
|
| 1981 |
Zakrzewska K, Lavery R, Pullman B. The electrostatic potential of a model phospholipid monolayer International Journal of Quantum Chemistry. 20: 161-170. DOI: 10.1002/Qua.560200714 |
0.54 |
|
| 1981 |
Lavery R, Pullman B. Molecular electrostatic potential on the surface envelopes of macromolecules: B-DNA International Journal of Quantum Chemistry. 20: 259-272. DOI: 10.1002/Qua.560200123 |
0.464 |
|
| 1981 |
Lavery R, Pullman A, Pullman B. Steric accessibility of reactive centers in B-DNA International Journal of Quantum Chemistry. 20: 49-62. DOI: 10.1002/Qua.560200106 |
0.464 |
|
| 1980 |
Zakrzewska K, Lavery R, Pullman A, Pullman B. The electrostatic potential and steric accessibility of reactive sites within Z-DNA. Nucleic Acids Research. 8: 3917-32. PMID 7443517 DOI: 10.1093/Nar/8.17.3917 |
0.64 |
|
| 1980 |
Lavery R, Pullman A, Pullman B. The electrostatic molecular potential of yeast tRNAPhe. (I). The potential due to the phosphate backbone. Nucleic Acids Research. 8: 1061-79. PMID 7003554 DOI: 10.1093/Nar/8.5.1061 |
0.553 |
|
| 1980 |
Lavery R, Pullman A, Pullman B, de Oliveira M. The electrostatic molecular potential of tRNAPhe. IV. The potentials and steric accessibilities of sites associated with the bases. Nucleic Acids Research. 8: 5095-111. PMID 7003548 DOI: 10.1093/Nar/8.21.5095 |
0.557 |
|
| 1980 |
Lavery R, Pullman A, Pullman B. The electrostatic molecular potential of yeast tRNA. (I). The potential due to the phosphate backbone Nucleic Acids Research. 8: 1061-1079. DOI: 10.1093/nar/8.5.1061 |
0.487 |
|
| 1980 |
Lavery R, Pullman A, Pullman B. The electrostatic molecular potential of yeast tRNAPhe. III. The molecular potential and the steric acessibility associated with the phosphate groups Theoretica Chimica Acta. 57: 233-243. DOI: 10.1007/Bf00554104 |
0.552 |
|
| 1980 |
Cauchy D, Lavery R, Pullman B. The effect of screening the electrostatic potentials of reactive sites within B-DNA by metal cations Theoretica Chimica Acta. 57: 323-327. DOI: 10.1007/Bf00552744 |
0.596 |
|
| 1980 |
Lavery R, Oliveira MD, Pullman B. The electrostatic potential of yeast tRNAPhe. II. The potentials of the phosphate groups in their various conformational states Journal of Computational Chemistry. 1: 301-306. DOI: 10.1002/Jcc.540010314 |
0.547 |
|
| 1979 |
Lavery R, Pullman B. The molecular electrostatic potential of the B-DNA helix - IV. C8 and amino sites of purines and the binding of carcinogenic acetylaminofluorene to DNA Theoretica Chimica Acta. 53: 175-181. DOI: 10.1007/Bf00548830 |
0.647 |
|
| 1979 |
Lavery R, Pullman B. Theoretical model study of the reactivity of benzo(a)pyrene diol epoxide with the amino groups of the nucleic acid bases International Journal of Quantum Chemistry. 16: 175-188. DOI: 10.1002/Qua.560160119 |
0.615 |
|
| 1979 |
Lavery R, Pullman B. Model quantum chemical studies of the electronic structure and aspects of reactivity of diol epoxides of aromatic hydrocarbons International Journal of Quantum Chemistry. 15: 271-280. DOI: 10.1002/Qua.560150303 |
0.525 |
|
| 1978 |
Lavery R, Pullman A, Pullman B. On the relative acidity and basicity of the amino groups of the nucleic acid bases Theoretica Chimica Acta. 50: 67-73. DOI: 10.1007/Bf00552495 |
0.538 |
|
| Show low-probability matches. |
