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Timothy D. Craggs - Publications

Affiliations: 
University of Oxford, Oxford, United Kingdom 
Area:
Single-Molecule FRET
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Agam G, Gebhardt C, Popara M, Mächtel R, Folz J, Ambrose B, Chamachi N, Chung SY, Craggs TD, de Boer M, Grohmann D, Ha T, Hartmann A, Hendrix J, Hirschfeld V, et al. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature Methods. PMID 36973549 DOI: 10.1038/s41592-023-01807-0  0.335
2021 Evans GW, Craggs T, Kapanidis AN. The rate-limiting step of DNA synthesis by DNA polymerase occurs in the fingers-closed conformation. Journal of Molecular Biology. 167410. PMID 34929202 DOI: 10.1016/j.jmb.2021.167410  0.395
2020 Abdu K, Aiertza MK, Wilkinson OJ, Senthong P, Craggs TD, Povey AC, Margison GP, Williams DM. Synthesis of oligodeoxyribonucleotides containing a tricyclic thio analogue of -methylguanine and their recognition by MGMT and Atl1. Nucleosides, Nucleotides & Nucleic Acids. 1-14. PMID 32449465 DOI: 10.1080/15257770.2020.1764971  0.414
2020 Ambrose B, Willmott M, Johnston-Wood T, Shaw RA, Hill JG, Craggs TD. Below the FRET Limit: A New Quantitative Single-Molecule Tool for Measuring Short-Range (0-3 NM) Biomolecular Conformations Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.3319  0.344
2020 Ambrose B, Baxter J, Cully J, Willmott M, Bateman BC, Steele E, Cadby AJ, Shewring J, Aaldering M, Craggs TD. Democratizing Single-Molecule FRET: An Open-Source Microscope for Measuring Precise Distances and Biomolecular Dynamics Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.3317  0.332
2019 Craggs TD, Sustarsic M, Plochowietz A, Mosayebi M, Kaju H, Cuthbert A, Hohlbein J, Domicevica L, Biggin PC, Doye JPK, Kapanidis AN. Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase. Nucleic Acids Research. PMID 31544938 DOI: 10.1093/Nar/Gkz797  0.522
2018 Martin E, Williams HEL, Pitoulias M, Stevens D, Winterhalter C, Craggs TD, Murray H, Searle MS, Soultanas P. DNA replication initiation in Bacillus subtilis: structural and functional characterization of the essential DnaA-DnaD interaction. Nucleic Acids Research. PMID 30534966 DOI: 10.1093/Nar/Gky1220  0.459
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Craggs TD, et al. Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. 15: 669-676. PMID 30171252 DOI: 10.1038/S41592-018-0085-0  0.377
2018 Bennet IA, Finger LD, Baxter NJ, Ambrose B, Hounslow AM, Thompson MJ, Exell JC, Shahari NNBM, Craggs TD, Waltho JP, Grasby JA. Regional conformational flexibility couples substrate specificity and scissile phosphate diester selectivity in human flap endonuclease 1. Nucleic Acids Research. PMID 29718417 DOI: 10.1093/Nar/Gky293  0.462
2018 Fisher GLM, Bateman BC, Craggs TD, Dillingham MS. The Conformational Landscape of SMC: A FRET Study Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1169  0.331
2017 Fisher GL, Pastrana CL, Higman VA, Koh A, Taylor JA, Butterer A, Craggs T, Sobott F, Murray H, Crump MP, Moreno-Herrero F, Dillingham MS. The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere. Elife. 6. PMID 29244022 DOI: 10.7554/Elife.28086  0.45
2017 Craggs TD. Cool and dynamic: single-molecule fluorescence-based structural biology Nature Methods. 14: 123-124. PMID 28139670 DOI: 10.1038/Nmeth.4159  0.397
2017 Fisher GL, Pastrana CL, Higman VA, Koh A, Taylor JA, Butterer A, Craggs T, Sobott F, Murray H, Crump MP, Moreno-Herrero F, Dillingham MS. Author response: The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere Elife. DOI: 10.7554/Elife.28086.025  0.422
2016 Meli M, Sustarsic M, Craggs TD, Kapanidis AN, Colombo G. DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations. Frontiers in Molecular Biosciences. 3: 20. PMID 27303671 DOI: 10.3389/Fmolb.2016.00020  0.483
2016 Nott TJ, Craggs TD, Baldwin AJ. Membraneless organelles can melt nucleic acid duplexes and act as biomolecular filters. Nature Chemistry. 8: 569-75. PMID 27219701 DOI: 10.1038/Nchem.2519  0.386
2016 Algasaier SI, Exell JC, Bennet IA, Thompson MJ, Gotham VJ, Shaw SJ, Craggs TD, Finger LD, Grasby JA. DNA and Protein Requirements for Substrate Conformational Changes Necessary for Human Flap Endonuclease-1 Catalyzed Reaction. The Journal of Biological Chemistry. PMID 26884332 DOI: 10.1074/jbc.M115.698993  0.356
2016 Craggs TD, Sustarsic M, Mosayebi M, Kaju H, Hohlbein J, Biggin PC, Doye JPK, Kapanidis AN. How Structure-Specific DNA-Binding Proteins Recognise their Substrates Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2751  0.524
2015 Blouin S, Craggs TD, Lafontaine DA, Penedo JC. Functional studies of DNA-protein interactions using FRET techniques Methods in Molecular Biology. 1334: 115-141. PMID 26404147 DOI: 10.1007/978-1-4939-2877-4_8  0.436
2015 Evans GW, Hohlbein J, Craggs T, Aigrain L, Kapanidis AN. Real-time single-molecule studies of the motions of DNA polymerase fingers illuminate DNA synthesis mechanisms. Nucleic Acids Research. 43: 5998-6008. PMID 26013816 DOI: 10.1093/Nar/Gkv547  0.482
2015 Nott TJ, Petsalaki E, Farber P, Jervis D, Fussner E, Plochowietz A, Craggs TD, Bazett-Jones DP, Pawson T, Forman-Kay JD, Baldwin AJ. Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles. Molecular Cell. 57: 936-47. PMID 25747659 DOI: 10.1016/J.Molcel.2015.01.013  0.398
2015 Sustarsic M, Craggs T, Hohlbein J, Cuthbert A, Taylor N, Kaju H, Mosayebi M, Doye J, Kapanidis AN. Single-Molecule FRET for Dynamic Structural Biology: DNA Polymerase i Structure and Mechanism with Angstrom Precision Biophysical Journal. 108: 14a. DOI: 10.1016/J.Bpj.2014.11.103  0.524
2014 Craggs TD, Hutton RD, Brenlla A, White MF, Penedo JC. Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates. Nucleic Acids Research. 42: 1857-72. PMID 24234453 DOI: 10.1093/Nar/Gkt1116  0.513
2014 Hohlbein J, Craggs TD, Cordes T. Alternating-laser excitation: Single-molecule FRET and beyond Chemical Society Reviews. 43: 1156-1171. PMID 24037326 DOI: 10.1039/C3Cs60233H  0.358
2014 Sustarsic M, Aigrain L, Plochowietz A, Craggs T, Kapanidis A. Optimized Internalization of Fluorescently Labeled Biomolecules into Live Bacteria Biophysical Journal. 106: 458a-459a. DOI: 10.1016/J.Bpj.2013.11.2600  0.399
2014 Craggs TD, Sustarsic M, Hohlbein J, Cuthbert A, Taylor N, Evans G, Kapanidis AN. A Novel FRET-Based Structure of DNA Polymerase Complexed with Kinked Gapped-DNA Biophysical Journal. 106: 274a. DOI: 10.1016/J.Bpj.2013.11.1605  0.517
2013 Hohlbein J, Aigrain L, Craggs TD, Bermek O, Potapova O, Shoolizadeh P, Grindley ND, Joyce CM, Kapanidis AN. Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion. Nature Communications. 4: 2131. PMID 23831915 DOI: 10.1038/Ncomms3131  0.478
2013 Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN. The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: Implications for transcription start-site selection Journal of Molecular Biology. 425: 875-885. PMID 23274143 DOI: 10.1016/J.Jmb.2012.12.015  0.355
2012 Craggs TD, Kapanidis AN. Six steps closer to FRET-driven structural biology Nature Methods. 9: 1157-1159. PMID 23223168 DOI: 10.1038/Nmeth.2257  0.411
2010 Hutton RD, Craggs TD, White MF, Penedo JC. PCNA and XPF cooperate to distort DNA substrates. Nucleic Acids Research. 38: 1664-75. PMID 20008103 DOI: 10.1093/Nar/Gkp1104  0.501
2009 Craggs TD. Green fluorescent protein: Structure, folding and chromophore maturation Chemical Society Reviews. 38: 2865-2875. PMID 19771333 DOI: 10.1039/B903641P  0.361
2009 Blouin S, Craggs TD, Lafontaine DA, Penedo JC. Functional studies of DNA-protein interactions using FRET techniques Methods in Molecular Biology. 543: 475-502. PMID 19378182 DOI: 10.1007/978-1-60327-015-1_28  0.51
2008 Orte A, Craggs TD, White SS, Jackson SE, Klenerman D. Evidence of an intermediate and parallel pathways in protein unfolding from single-molecule fluorescence Journal of the American Chemical Society. 130: 7898-7907. PMID 18507381 DOI: 10.1021/Ja709973M  0.431
2007 Huang Jr, Craggs TD, Christodoulou J, Jackson SE. Stable Intermediate States and High Energy Barriers in the Unfolding of GFP Journal of Molecular Biology. 370: 356-371. PMID 17512539 DOI: 10.1016/J.Jmb.2007.04.039  0.372
2006 Jackson SE, Craggs TD, Huang JR. Understanding the folding of GFP using biophysical techniques Expert Review of Proteomics. 3: 545-559. PMID 17078767 DOI: 10.1586/14789450.3.5.545  0.352
2006 Khan F, Kuprov I, Craggs TD, Hore PJ, Jackson SE. 19F NMR studies of the native and denatured states of green fluorescent protein. Journal of the American Chemical Society. 128: 10729-37. PMID 16910667 DOI: 10.1021/Ja060618U  0.319
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