| Year |
Citation |
Score |
| 2024 |
El Sayyed H, Pambos OJ, Stracy M, Gottesman ME, Kapanidis AN. Single-molecule tracking reveals the functional allocation, in vivo interactions, and spatial organization of universal transcription factor NusG. Molecular Cell. 84: 926-937.e4. PMID 38387461 DOI: 10.1016/j.molcel.2024.01.025 |
0.361 |
|
| 2023 |
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda D, Steffen FD, Cordes T, Magennis S, Lerner E. A new twist on PIFE: photoisomerisation-related fluorescence enhancement. Methods and Applications in Fluorescence. PMID 37726007 DOI: 10.1088/2050-6120/acfb58 |
0.786 |
|
| 2023 |
McMahon A, Andrews R, Groves D, Ghani SV, Cordes T, Kapanidis AN, Robb NC. High-throughput super-resolution analysis of influenza virus pleomorphism reveals insights into viral spatial organization. Plos Pathogens. 19: e1011484. PMID 37390113 DOI: 10.1371/journal.ppat.1011484 |
0.555 |
|
| 2023 |
Kümmerlin M, Mazumder A, Kapanidis AN. Bleaching-resistant, Near-continuous Single-molecule Fluorescence and FRET Based on Fluorogenic and Transient DNA Binding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. e202300175. PMID 37043705 DOI: 10.1002/cphc.202300175 |
0.773 |
|
| 2023 |
Agam G, Gebhardt C, Popara M, Mächtel R, Folz J, Ambrose B, Chamachi N, Chung SY, Craggs TD, de Boer M, Grohmann D, Ha T, Hartmann A, Hendrix J, Hirschfeld V, ... ... Kapanidis AN, et al. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature Methods. PMID 36973549 DOI: 10.1038/s41592-023-01807-0 |
0.777 |
|
| 2023 |
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda D, Steffen FD, Cordes T, Magennis SW, Lerner E. A new twist on PIFE: photoisomerisation-related fluorescence enhancement. Arxiv. PMID 36866225 |
0.786 |
|
| 2021 |
Evans GW, Craggs T, Kapanidis AN. The rate-limiting step of DNA synthesis by DNA polymerase occurs in the fingers-closed conformation. Journal of Molecular Biology. 167410. PMID 34929202 DOI: 10.1016/j.jmb.2021.167410 |
0.309 |
|
| 2021 |
Malinen AM, Bakermans J, Aalto-Setälä E, Blessing M, Bauer DLV, Parilova O, Belogurov GA, Dulin D, Kapanidis AN. Real-Time Single-Molecule Studies of RNA Polymerase-Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway. Journal of Molecular Biology. 434: 167383. PMID 34863780 DOI: 10.1016/j.jmb.2021.167383 |
0.754 |
|
| 2021 |
Mazumder A, Ebright RH, Kapanidis AN. Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism. Elife. 10. PMID 34633286 DOI: 10.7554/eLife.70090 |
0.816 |
|
| 2021 |
Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Jung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, ... ... Kapanidis AN, et al. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. Elife. 10. PMID 33779550 DOI: 10.7554/eLife.60416 |
0.775 |
|
| 2021 |
Mazumder A, Wang A, Uhm H, Ebright RH, Kapanidis AN. RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding. Nucleic Acids Research. PMID 33589919 DOI: 10.1093/nar/gkab074 |
0.803 |
|
| 2020 |
Mazumder A, Lin M, Kapanidis AN, Ebright RH. Closing and opening of the RNA polymerase trigger loop. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571927 DOI: 10.1073/Pnas.1920427117 |
0.824 |
|
| 2020 |
Mazumder A, Ebright RH, Kapanidis AN. Single-molecule Analysis Reveals the Mechanism for DNA Opening in Transcription Initiation Biophysical Journal. 118: 29a. DOI: 10.1016/J.Bpj.2019.11.339 |
0.8 |
|
| 2019 |
Gilboa B, Jing B, Cui TJ, Sow M, Plochowietz A, Mazumder A, Kapanidis AN. Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules. Biophysical Journal. PMID 31711608 DOI: 10.1016/J.Bpj.2019.10.033 |
0.766 |
|
| 2019 |
Craggs TD, Sustarsic M, Plochowietz A, Mosayebi M, Kaju H, Cuthbert A, Hohlbein J, Domicevica L, Biggin PC, Doye JPK, Kapanidis AN. Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase. Nucleic Acids Research. PMID 31544938 DOI: 10.1093/Nar/Gkz797 |
0.311 |
|
| 2019 |
Mazumder A, Kapanidis AN. Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms. Journal of Molecular Biology. PMID 31082441 DOI: 10.1016/J.Jmb.2019.04.046 |
0.741 |
|
| 2019 |
Robb NC, Te Velthuis AJW, Fodor E, Kapanidis AN. Real-time analysis of single influenza virus replication complexes reveals large promoter-dependent differences in initiation dynamics. Nucleic Acids Research. PMID 31032520 DOI: 10.1093/nar/gkz313 |
0.328 |
|
| 2018 |
Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Kapanidis AN, et al. Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. PMID 30327572 DOI: 10.1038/S41592-018-0193-X |
0.72 |
|
| 2018 |
Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Kapanidis AN, et al. Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. 15: 669-676. PMID 30171252 DOI: 10.1038/S41592-018-0085-0 |
0.753 |
|
| 2018 |
Duchi D, Mazumder A, Malinen AM, Ebright RH, Kapanidis AN. The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp. Nucleic Acids Research. PMID 29878276 DOI: 10.1093/Nar/Gky482 |
0.801 |
|
| 2018 |
Dulin D, Bauer DLV, Malinen AM, Bakermans JJW, Kaller M, Morichaud Z, Petushkov I, Depken M, Brodolin K, Kulbachinskiy A, Kapanidis AN. Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria. Nature Communications. 9: 1478. PMID 29662062 DOI: 10.1038/S41467-018-03902-9 |
0.705 |
|
| 2018 |
Lin W, Das K, Degen D, Mazumder A, Duchi D, Wang D, Ebright YW, Ebright RY, Sineva E, Gigliotti M, Srivastava A, Mandal S, Jiang Y, Liu Y, Yin R, ... ... Kapanidis AN, et al. Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Molecular Cell. PMID 29606590 DOI: 10.1016/J.Molcel.2018.02.026 |
0.78 |
|
| 2018 |
Duchi D, Gryte K, Robb NC, Morichaud Z, Sheppard C, Brodolin K, Wigneshweraraj S, Kapanidis AN. Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes. Nucleic Acids Research. 46: 677-688. PMID 29177430 DOI: 10.1093/nar/gkx1146 |
0.406 |
|
| 2017 |
Garza de Leon F, Sellars L, Stracy M, Busby SJW, Kapanidis AN. Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor. Biophysical Journal. 112: 1316-1327. PMID 28402875 DOI: 10.1016/j.bpj.2017.02.028 |
0.312 |
|
| 2016 |
Plochowietz A, El-Sagheer AH, Brown T, Kapanidis AN. Stable end-sealed DNA as robust nano-rulers for single-molecule fluorescence. Chemical Science. 7: 4418-4422. PMID 30155088 DOI: 10.1039/C6Sc00639F |
0.414 |
|
| 2016 |
Hohlbein J, Kapanidis AN. Probing the Conformational Landscape of DNA Polymerases Using Diffusion-Based Single-Molecule FRET. Methods in Enzymology. 581: 353-378. PMID 27793286 DOI: 10.1016/bs.mie.2016.08.023 |
0.41 |
|
| 2016 |
Robb NC, Te Velthuis AJ, Wieneke R, Tampé R, Cordes T, Fodor E, Kapanidis AN. Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA. Nucleic Acids Research. 44: 10304-10315. PMID 27694620 DOI: 10.1093/Nar/Gkw884 |
0.656 |
|
| 2016 |
Duchi D, Bauer DL, Fernandez L, Evans G, Robb N, Hwang LC, Gryte K, Tomescu A, Zawadzki P, Morichaud Z, Brodolin K, Kapanidis AN. RNA Polymerase Pausing during Initial Transcription. Molecular Cell. PMID 27618490 DOI: 10.1016/J.Molcel.2016.08.011 |
0.403 |
|
| 2016 |
Bauer DL, Duchi D, Kapanidis AN. E. Coli RNA Polymerase Pauses during Initial Transcription Biophysical Journal. 110: 21a. DOI: 10.1016/J.Bpj.2015.11.170 |
0.384 |
|
| 2015 |
Stracy M, Uphoff S, Garza de Leon F, Kapanidis AN. Corrigendum to "In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair" [FEBS Lett. 588 (19) (2014) 3585-3594]. Febs Letters. 589: 787. PMID 26864684 DOI: 10.1016/j.febslet.2015.01.021 |
0.31 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Alternating Laser Excitation for Solution-Based Single-Molecule FRET. Cold Spring Harbor Protocols. 2015: pdb.top086405. PMID 26527772 DOI: 10.1101/Pdb.Top086405 |
0.791 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Sample Preparation and Data Acquisition for μs-ALEX. Cold Spring Harbor Protocols. 2015: pdb.prot086439. PMID 26527767 DOI: 10.1101/Pdb.Prot086439 |
0.734 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Aligning the μs-ALEX Setup. Cold Spring Harbor Protocols. 2015: pdb.prot086421. PMID 26527766 DOI: 10.1101/Pdb.Prot086421 |
0.758 |
|
| 2015 |
Kapanidis A, Majumdar D, Heilemann M, Nir E, Weiss S. Assembling the μs-ALEX Setup. Cold Spring Harbor Protocols. 2015: pdb.prot086413. PMID 26527765 DOI: 10.1101/Pdb.Prot086413 |
0.728 |
|
| 2015 |
Stracy M, Lesterlin C, Garza de Leon F, Uphoff S, Zawadzki P, Kapanidis AN. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid. Proceedings of the National Academy of Sciences of the United States of America. 112: E4390-9. PMID 26224838 DOI: 10.1073/pnas.1507592112 |
0.37 |
|
| 2015 |
Evans GW, Hohlbein J, Craggs T, Aigrain L, Kapanidis AN. Real-time single-molecule studies of the motions of DNA polymerase fingers illuminate DNA synthesis mechanisms. Nucleic Acids Research. 43: 5998-6008. PMID 26013816 DOI: 10.1093/Nar/Gkv547 |
0.366 |
|
| 2015 |
Aigrain L, Sustarsic M, Crawford R, Plochowietz A, Kapanidis AN. Internalization and observation of fluorescent biomolecules in living microorganisms via electroporation. Journal of Visualized Experiments : Jove. PMID 25741968 DOI: 10.3791/52208 |
0.356 |
|
| 2015 |
Plochowietz A, Llumigusin DD, Zawadzki P, El-Sagheer AH, Brown T, Kapanidis AN. Real-Time Transcription Initiation by E. coli RNA Polymerase in vitro and in vivo Biophysical Journal. 108: 115a. DOI: 10.1016/J.Bpj.2014.11.646 |
0.402 |
|
| 2015 |
Sustarsic M, Craggs T, Hohlbein J, Cuthbert A, Taylor N, Kaju H, Mosayebi M, Doye J, Kapanidis AN. Single-Molecule FRET for Dynamic Structural Biology: DNA Polymerase i Structure and Mechanism with Angstrom Precision Biophysical Journal. 108: 14a. DOI: 10.1016/J.Bpj.2014.11.103 |
0.338 |
|
| 2014 |
May PF, Pinkney JN, Zawadzki P, Evans GW, Sherratt DJ, Kapanidis AN. Tethered fluorophore motion: studying large DNA conformational changes by single-fluorophore imaging. Biophysical Journal. 107: 1205-16. PMID 25185556 DOI: 10.1016/j.bpj.2014.07.024 |
0.394 |
|
| 2014 |
Stracy M, Uphoff S, Garza de Leon F, Kapanidis AN. In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair. Febs Letters. 588: 3585-94. PMID 24859634 DOI: 10.1016/j.febslet.2014.05.026 |
0.381 |
|
| 2014 |
Plochowietz A, Crawford R, Kapanidis AN. Characterization of organic fluorophores for in vivo FRET studies based on electroporated molecules. Physical Chemistry Chemical Physics : Pccp. 16: 12688-94. PMID 24837080 DOI: 10.1039/c4cp00995a |
0.375 |
|
| 2014 |
Sustarsic M, Plochowietz A, Aigrain L, Yuzenkova Y, Zenkin N, Kapanidis A. Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation. Histochemistry and Cell Biology. 142: 113-24. PMID 24696085 DOI: 10.1007/S00418-014-1213-2 |
0.401 |
|
| 2014 |
Uphoff S, Sherratt DJ, Kapanidis AN. Visualizing protein-DNA interactions in live bacterial cells using photoactivated single-molecule tracking. Journal of Visualized Experiments : Jove. PMID 24638084 DOI: 10.3791/51177 |
0.323 |
|
| 2014 |
Kapanidis A. New FRET Methods for Studying Processing of Nucleic Acids by Protein Machines Biophysical Journal. 106: 44a. DOI: 10.1016/J.Bpj.2013.11.325 |
0.512 |
|
| 2014 |
Sustarsic M, Aigrain L, Plochowietz A, Craggs T, Kapanidis A. Optimized Internalization of Fluorescently Labeled Biomolecules into Live Bacteria Biophysical Journal. 106: 458a-459a. DOI: 10.1016/J.Bpj.2013.11.2600 |
0.42 |
|
| 2014 |
Stracy M, Uphoff S, Garza de Leon F, Kapanidis A. Super-Resolution Imaging of Transcription in Live Bacterial Cells Biophysical Journal. 106: 373a. DOI: 10.1016/J.Bpj.2013.11.2112 |
0.454 |
|
| 2014 |
Craggs TD, Sustarsic M, Hohlbein J, Cuthbert A, Taylor N, Evans G, Kapanidis AN. A Novel FRET-Based Structure of DNA Polymerase Complexed with Kinked Gapped-DNA Biophysical Journal. 106: 274a. DOI: 10.1016/J.Bpj.2013.11.1605 |
0.324 |
|
| 2014 |
Plochowietz A, Crawford R, Aigrain L, Sustarsic M, Kapanidis AN. Combining Accurate FRET and Tracking of Single Protein and DNA Molecules in Live Bacteria Biophysical Journal. 106: 223a-224a. DOI: 10.1016/j.bpj.2013.11.1308 |
0.316 |
|
| 2013 |
Crawford R, Torella JP, Aigrain L, Plochowietz A, Gryte K, Uphoff S, Kapanidis AN. Long-lived intracellular single-molecule fluorescence using electroporated molecules. Biophysical Journal. 105: 2439-50. PMID 24314075 DOI: 10.1016/j.bpj.2013.09.057 |
0.396 |
|
| 2013 |
Hohlbein J, Aigrain L, Craggs TD, Bermek O, Potapova O, Shoolizadeh P, Grindley ND, Joyce CM, Kapanidis AN. Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion. Nature Communications. 4: 2131. PMID 23831915 DOI: 10.1038/Ncomms3131 |
0.314 |
|
| 2013 |
Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN. The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: Implications for transcription start-site selection Journal of Molecular Biology. 425: 875-885. PMID 23274143 DOI: 10.1016/J.Jmb.2012.12.015 |
0.779 |
|
| 2013 |
Crawford R, Aigrain L, Plochowietz A, Torella JP, Uphoff S, Kapanidis AN. Internalization of Fluorescent Biomolecules for Long-Lived Single-Molecule Observation in Living Bacteria Biophysical Journal. 104: 176a. DOI: 10.1016/j.bpj.2012.11.990 |
0.314 |
|
| 2013 |
Tomescu AI, Robb NC, Hengrung N, Fodor E, Kapanidis AN. Characterizing Influenza a RNA Polymerase - Promoter Interaction using Ensemble Fluorescence Spectroscopy Biophysical Journal. 104: 584a. DOI: 10.1016/j.bpj.2012.11.3247 |
0.35 |
|
| 2013 |
Aigrain L, Crawford R, Torella JP, Plochowietz A, Sustarsic M, Kapanidis AN. Single-Molecule Fluorescence and FRET Measurements on Internalized Proteins in Living Bacteria Biophysical Journal. 104: 574a. DOI: 10.1016/j.bpj.2012.11.3188 |
0.325 |
|
| 2012 |
Craggs TD, Kapanidis AN. Six steps closer to FRET-driven structural biology Nature Methods. 9: 1157-1159. PMID 23223168 DOI: 10.1038/Nmeth.2257 |
0.306 |
|
| 2012 |
Pinkney JN, Zawadzki P, Mazuryk J, Arciszewska LK, Sherratt DJ, Kapanidis AN. Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence. Proceedings of the National Academy of Sciences of the United States of America. 109: 20871-6. PMID 23184986 DOI: 10.1073/pnas.1211922109 |
0.335 |
|
| 2012 |
Le Reste L, Hohlbein J, Gryte K, Kapanidis AN. Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET. Biophysical Journal. 102: 2658-68. PMID 22713582 DOI: 10.1016/j.bpj.2012.04.028 |
0.41 |
|
| 2012 |
Duchi Llumigusin D, Robb N, Gryte K, Kapanidis AN. Single-Molecule Studies of Transcription Initiation using a Vesicle Approach Biophysical Journal. 102: 485a. DOI: 10.1016/j.bpj.2011.11.2661 |
0.313 |
|
| 2012 |
Periz J, Celma C, Pinkney J, Roy P, Kapanidis A. Detection of Specific mRNA Synthesis in Rotavirus using Single Molecule Hybridization Biophysical Journal. 102: 287a. DOI: 10.1016/J.Bpj.2011.11.1587 |
0.506 |
|
| 2012 |
Pinkney J, Zawadzki P, Sherratt DJ, Kapanidis AN. Single-Molecule Fluorescence Studies of Site-Specific DNA Recombination Biophysical Journal. 102: 283a. DOI: 10.1016/j.bpj.2011.11.1563 |
0.36 |
|
| 2011 |
Torella JP, Holden SJ, Santoso Y, Hohlbein J, Kapanidis AN. Identifying molecular dynamics in single-molecule fret experiments with burst variance analysis Biophysical Journal. 100: 1568-1577. PMID 21402040 DOI: 10.1016/j.bpj.2011.01.066 |
0.338 |
|
| 2011 |
Gryte K, Cordes T, Tomescu A, Hwang L, Kapanidis A. Real-Time Initial Transcription by a Multisubunit RNA Polymerase Biophysical Journal. 100: 65a. DOI: 10.1016/J.Bpj.2010.12.554 |
0.715 |
|
| 2011 |
Hohlbein J, Joyce CM, Shoolizadeh P, Evans G, Potapova O, Bermek O, Duchillumigusin D, Grindley ND, Kapanidis AN. Novel Conformational States in Mutator DNA Polymerases Observed Using Single-Molecule FRET Biophysical Journal. 100: 240a-241a. DOI: 10.1016/J.Bpj.2010.12.1532 |
0.355 |
|
| 2010 |
Cordes T, Santoso Y, Tomescu AI, Gryte K, Hwang LC, Camará B, Wigneshweraraj S, Kapanidis AN. Sensing DNA opening in transcription using quenchable Förster resonance energy transfer Biochemistry. 49: 9171-9180. PMID 20818825 DOI: 10.1021/Bi101184G |
0.709 |
|
| 2010 |
Uphoff S, Holden SJ, Le Reste L, Periz J, Van De Linde S, Heilemann M, Kapanidis AN. Monitoring multiple distances within a single molecule using switchable FRET Nature Methods. 7: 831-836. PMID 20818380 DOI: 10.1038/nmeth.1502 |
0.415 |
|
| 2010 |
Hohlbein J, Gryte K, Heilemann M, Kapanidis AN. Surfing on a new wave of single-molecule fluorescence methods. Physical Biology. 7: 031001. PMID 20686191 DOI: 10.1088/1478-3975/7/3/031001 |
0.366 |
|
| 2010 |
Santoso Y, Torella JP, Kapanidis AN. Characterizing single-molecule FRET dynamics with probability distribution analysis. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 11: 2209-19. PMID 20575136 DOI: 10.1002/cphc.201000129 |
0.308 |
|
| 2010 |
Santoso Y, Joyce CM, Potapova O, Le Reste L, Hohlbein J, Torella JP, Grindley ND, Kapanidis AN. Conformational transitions in DNA polymerase I revealed by single-molecule FRET. Proceedings of the National Academy of Sciences of the United States of America. 107: 715-20. PMID 20080740 DOI: 10.1073/Pnas.0910909107 |
0.405 |
|
| 2010 |
Lymperopoulos K, Crawford R, Torella JP, Heilemann M, Hwang LC, Holden SJ, Kapanidis AN. Single-molecule DNA biosensors for protein and ligand detection Angewandte Chemie - International Edition. 49: 1316-1320. PMID 20077444 DOI: 10.1002/anie.200904597 |
0.372 |
|
| 2010 |
Endesfelder U, Finan K, Cook P, Kapanidis A, Heilemann M. Quantitative Studies of Transcription in E.coli With Subdiffraction Fluorescence Microscopy Biophysical Journal. 98: 69a-70a. DOI: 10.1016/J.Bpj.2009.12.395 |
0.448 |
|
| 2010 |
Hohlbein J, Le Reste L, Potapova O, Joyce C, El-Sagheer AH, Brown T, Kapanidis AN. Towards Dark Quencher Based Real Time DNA Sequencing Biophysical Journal. 98: 611a-612a. DOI: 10.1016/J.Bpj.2009.12.3336 |
0.406 |
|
| 2010 |
Crawford R, Lymperopoulos K, Torella JP, Heilemann M, Hwang LC, Holden SJ, Kapanidis A. Single-Molecule DNA Biosensors for Quantitative Transcription Factor Detection Biophysical Journal. 98: 611a. DOI: 10.1016/J.Bpj.2009.12.3333 |
0.455 |
|
| 2010 |
Santoso Y, Joyce CM, Potapova O, Le Reste L, Hohlbein J, Torella JP, Grindley ND, Kapanidis AN. Conformational Changes in DNA Polymerase I Revealed by Single-Molecule FRET Biophysical Journal. 98: 436a-437a. DOI: 10.1016/J.Bpj.2009.12.2370 |
0.399 |
|
| 2009 |
Santoso Y, Kapanidis AN. Probing biomolecular structures and dynamics of single molecules using in-gel alternating-laser excitation. Analytical Chemistry. 81: 9561-70. PMID 19863108 DOI: 10.1021/ac901423e |
0.37 |
|
| 2009 |
Heilemann M, Hwang LC, Lymperopoulos K, Kapanidis AN. Single-molecule FRET analysis of protein-DNA complexes. Methods in Molecular Biology (Clifton, N.J.). 543: 503-21. PMID 19378183 DOI: 10.1007/978-1-60327-015-1_29 |
0.435 |
|
| 2009 |
Kapanidis AN, Strick T. Biology, one molecule at a time. Trends in Biochemical Sciences. 34: 234-43. PMID 19362843 DOI: 10.1016/j.tibs.2009.01.008 |
0.306 |
|
| 2009 |
Ebright R, Weiss S, Chakraborty A, Wang D, Korlann Y, Kapanidis A, Margeat E. Single-Molecule Analysis of Transcription Biophysical Journal. 96: 202a. DOI: 10.1016/J.Bpj.2008.12.1085 |
0.812 |
|
| 2008 |
Santoso Y, Hwang LC, Le Reste L, Kapanidis AN. Red light, green light: probing single molecules using alternating-laser excitation. Biochemical Society Transactions. 36: 738-44. PMID 18631150 DOI: 10.1042/BST0360738 |
0.38 |
|
| 2007 |
Doose S, Heilemann M, Michalet X, Weiss S, Kapanidis AN. Periodic acceptor excitation spectroscopy of single molecules. European Biophysics Journal : Ebj. 36: 669-74. PMID 17279362 DOI: 10.1007/S00249-007-0133-7 |
0.523 |
|
| 2007 |
Lee NK, Kapanidis AN, Koh HR, Korlann Y, Ho SO, Kim Y, Gassman N, Kim SK, Weiss S. Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances. Biophysical Journal. 92: 303-12. PMID 17040983 DOI: 10.1529/Biophysj.106.093211 |
0.807 |
|
| 2006 |
Kapanidis AN, Margeat E, Ho SO, Kortkhonjia E, Weiss S, Ebright RH. Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science (New York, N.Y.). 314: 1144-7. PMID 17110578 DOI: 10.1126/Science.1131399 |
0.805 |
|
| 2006 |
Margeat E, Kapanidis AN, Tinnefeld P, Wang Y, Mukhopadhyay J, Ebright RH, Weiss S. Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophysical Journal. 90: 1419-31. PMID 16299085 DOI: 10.1529/Biophysj.105.069252 |
0.851 |
|
| 2005 |
Kapanidis AN, Margeat E, Laurence TA, Doose S, Ho SO, Mukhopadhyay J, Kortkhonjia E, Mekler V, Ebright RH, Weiss S. Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis. Molecular Cell. 20: 347-56. PMID 16285917 DOI: 10.1016/J.Molcel.2005.10.012 |
0.775 |
|
| 2005 |
Kapanidis AN, Laurence TA, Lee NK, Margeat E, Kong X, Weiss S. Alternating-laser excitation of single molecules. Accounts of Chemical Research. 38: 523-33. PMID 16028886 DOI: 10.1021/Ar0401348 |
0.693 |
|
| 2005 |
Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophysical Journal. 88: 2939-53. PMID 15653725 DOI: 10.1529/Biophysj.104.054114 |
0.805 |
|
| 2004 |
Kapanidis AN, Lee NK, Laurence TA, Doose S, Margeat E, Weiss S. Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proceedings of the National Academy of Sciences of the United States of America. 101: 8936-41. PMID 15175430 DOI: 10.1073/Pnas.0401690101 |
0.586 |
|
| 2004 |
Laurence TA, Kapanidis AN, Kong X, Chemla DS, Weiss S. Photon arrival-time interval distribution (PAID): A novel tool for analyzing molecular interactions Journal of Physical Chemistry B. 108: 3051-3067. |
0.606 |
|
| 2003 |
Mukhopadhyay J, Mekler V, Kortkhonjia E, Kapanidis AN, Ebright YW, Ebright RH. Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. Methods in Enzymology. 371: 144-59. PMID 14712697 DOI: 10.1016/S0076-6879(03)71010-6 |
0.826 |
|
| 2003 |
Michalet X, Kapanidis AN, Laurence T, Pinaud F, Doose S, Pflughoefft M, Weiss S. The power and prospects of fluorescence microscopies and spectroscopies. Annual Review of Biophysics and Biomolecular Structure. 32: 161-82. PMID 12598370 DOI: 10.1146/Annurev.Biophys.32.110601.142525 |
0.704 |
|
| 2002 |
Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell. 108: 599-614. PMID 11893332 DOI: 10.1016/S0092-8674(02)00667-0 |
0.805 |
|
| 2002 |
Kapanidis AN, Weiss S. Fluorescent probes and bioconjugation chemistries for single-molecule fluorescence analysis of biomolecules The Journal of Chemical Physics. 117: 10953-10964. DOI: 10.1063/1.1521158 |
0.535 |
|
| 2001 |
Kapanidis AN, Ebright YW, Ebright RH. Site-specific incorporation of fluorescent probes into protein: Hexahistidine-tag-mediated fluorescent labeling with (Ni2+:Nitrilotriacetic Acid)n - Fluorochrome conjugates [20] Journal of the American Chemical Society. 123: 12123-12125. PMID 11724636 DOI: 10.1021/Ja017074A |
0.545 |
|
| 2001 |
Kapanidis AN, Ebright YW, Ludescher RD, Chan S, Ebright RH. Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution Journal of Molecular Biology. 312: 453-468. PMID 11563909 DOI: 10.1006/Jmbi.2001.4976 |
0.563 |
|
| 2001 |
Mukhopadhyay J, Kapanidis AN, Mekler V, Kortkhonjia E, Ebright YW, Ebright RH. Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell. 106: 453-63. PMID 11525731 DOI: 10.1016/S0092-8674(01)00464-0 |
0.813 |
|
| 1998 |
Lagrange T, Kapanidis AN, Tang H, Reinberg D, Ebright RH. New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB Genes and Development. 12: 34-44. PMID 9420329 DOI: 10.1101/Gad.12.1.34 |
0.613 |
|
| 1996 |
Kapanidis AN, Lee T. Novel Method for the Production of Color-Compatible Ferrous Sulfate-Fortified Simulated Rice through Extrusion Journal of Agricultural and Food Chemistry. 44: 522-525. DOI: 10.1021/Jf950368T |
0.55 |
|
| 1995 |
KAPANIDIS AN, LEE T. Heating Cruciferous Vegetables Increases in Vitro Dialyzability of Intrinsic and Extrinsic Iron Journal of Food Science. 60: 128-131. DOI: 10.1111/J.1365-2621.1995.Tb05621.X |
0.56 |
|
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