Birgit Strodel - Publications

Research Centre Juelich, Germany, Jülich, Nordrhein-Westfalen, Germany 
 Heinrich Heine University Düsseldorf, Düsseldorf, Nordrhein-Westfalen, Germany 

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Khemtemourian L, Fatafta H, Davion B, Lecomte S, Castano S, Strodel B. Structural Dissection of the First Events Following Membrane Binding of the Islet Amyloid Polypeptide. Frontiers in Molecular Biosciences. 9: 849979. PMID 35372496 DOI: 10.3389/fmolb.2022.849979  0.34
2022 Samantray S, Schumann W, Illig AM, Carballo-Pacheco M, Paul A, Barz B, Strodel B. Molecular Dynamics Simulations of Protein Aggregation: Protocols for Simulation Setup and Analysis with Markov State Models and Transition Networks. Methods in Molecular Biology (Clifton, N.J.). 2340: 235-279. PMID 35167078 DOI: 10.1007/978-1-0716-1546-1_12  0.776
2021 Samantray S, Olubiyi OO, Strodel B. The Influences of Sulphation, Salt Type, and Salt Concentration on the Structural Heterogeneity of Glycosaminoglycans. International Journal of Molecular Sciences. 22. PMID 34768961 DOI: 10.3390/ijms222111529  0.723
2021 Fatafta H, Samantray S, Sayyed-Ahmad A, Coskuner-Weber O, Strodel B. Molecular simulations of IDPs: From ensemble generation to IDP interactions leading to disorder-to-order transitions. Progress in Molecular Biology and Translational Science. 183: 135-185. PMID 34656328 DOI: 10.1016/bs.pmbts.2021.06.003  0.736
2021 Fatafta H, Khaled M, Owen MC, Sayyed-Ahmad A, Strodel B. Amyloid-β peptide dimers undergo a random coil to β-sheet transition in the aqueous phase but not at the neuronal membrane. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34544868 DOI: 10.1073/pnas.2106210118  0.366
2021 Willbold D, Strodel B, Schröder GF, Hoyer W, Heise H. Amyloid-type Protein Aggregation and Prion-like Properties of Amyloids. Chemical Reviews. 121: 8285-8307. PMID 34137605 DOI: 10.1021/acs.chemrev.1c00196  0.424
2021 Paul A, Samantray S, Anteghini M, Khaled M, Strodel B. Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment. Chemical Science. 12: 6652-6669. PMID 34040740 DOI: 10.1039/d0sc04657d  0.778
2021 Samantray S, Strodel B. The Effects of Different Glycosaminoglycans on the Structure and Aggregation of the Amyloid-β (16-22) Peptide. The Journal of Physical Chemistry. B. 125: 5511-5525. PMID 34027669 DOI: 10.1021/acs.jpcb.1c00868  0.766
2020 Samantray S, Yin F, Kav B, Strodel B. Different Force Fields Give Rise to Different Amyloid Aggregation Pathways in Molecular Dynamics Simulations. Journal of Chemical Information and Modeling. PMID 33174726 DOI: 10.1021/acs.jcim.0c01063  0.777
2020 Deike S, Rothemund S, Voigt B, Samantray S, Strodel B, Binder WH. β-Turn mimetic synthetic peptides as amyloid-β aggregation inhibitors. Bioorganic Chemistry. 101: 104012. PMID 32683138 DOI: 10.1016/j.bioorg.2020.104012  0.752
2020 La Rosa C, Condorelli M, Compagnini G, Lolicato F, Milardi D, Do TN, Karttunen M, Pannuzzo M, Ramamoorthy A, Fraternali F, Collu F, Rezaei H, Strodel B, Raudino A. Symmetry-breaking transitions in the early steps of protein self-assembly. European Biophysics Journal : Ebj. PMID 32123956 DOI: 10.1007/S00249-020-01424-1  0.468
2020 Fatafta H, Poojari C, Sayyed-Ahmad A, Strodel B, Owen MC. Role of Oxidized Gly25, Gly29, and Gly33 Residues on the Interactions of Aβ with Lipid Membranes. Acs Chemical Neuroscience. PMID 31939658 DOI: 10.1021/Acschemneuro.9B00558  0.383
2019 Zhang T, Loschwitz J, Strodel B, Nagel-Steger L, Willbold D. Interference with Amyloid-β Nucleation by Transient Ligand Interaction. Molecules (Basel, Switzerland). 24. PMID 31195746 DOI: 10.3390/molecules24112129  0.434
2019 Owen MC, Gnutt D, Gao M, Wärmländer SKTS, Jarvet J, Gräslund A, Winter R, Ebbinghaus S, Strodel B. Effects of in vivo conditions on amyloid aggregation. Chemical Society Reviews. 48: 3946-3996. PMID 31192324 DOI: 10.1039/C8Cs00034D  0.416
2018 Carballo-Pacheco M, Ismail AE, Strodel B. On the Applicability of Force Fields to Study the Aggregation of Amyloidogenic Peptides Using Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. PMID 30336669 DOI: 10.1021/Acs.Jctc.8B00579  0.546
2018 Liao Q, Owen MC, Bali S, Barz B, Strodel B. Aβ under stress: the effects of acidosis, Cu-binding, and oxidation on amyloid β-peptide dimers. Chemical Communications (Cambridge, England). PMID 29947363 DOI: 10.1039/C8Cc02263A  0.352
2018 Österlund N, Kulkarni YS, Misiaszek AD, Wallin C, Krüger DM, Liao Q, Mashayekhy Rad F, Jarvet J, Strodel B, Wärmländer SKTS, Ilag LL, Kamerlin SCL, Gräslund A. Amyloid-β peptide interactions with amphiphilic surfactants: electrostatic and hydrophobic effects. Acs Chemical Neuroscience. PMID 29683649 DOI: 10.1021/Acschemneuro.8B00065  0.445
2018 Uluca B, Viennet T, Petrović D, Shaykhalishahi H, Weirich F, Gönülalan A, Strodel B, Etzkorn M, Hoyer W, Heise H. DNP-Enhanced MAS NMR: A Tool to Snapshot Conformational Ensembles of α-Synuclein in Different States. Biophysical Journal. 114: 1614-1623. PMID 29642031 DOI: 10.1016/J.Bpj.2018.02.011  0.322
2018 Owen MC, Kulig W, Poojari C, Rog T, Strodel B. Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer. Biochimica Et Biophysica Acta. Biomembranes. 1860: 1709-1720. PMID 29626441 DOI: 10.1016/j.bbamem.2018.03.026  0.378
2017 Barz B, Liao Q, Strodel B. Pathways of amyloid-β aggregation depend on oligomer shape. Journal of the American Chemical Society. PMID 29235346 DOI: 10.1021/Jacs.7B10343  0.519
2017 Wolff M, Zhang-Haagen B, Decker C, Barz B, Schneider M, Biehl R, Radulescu A, Strodel B, Willbold D, Nagel-Steger L. Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution. Scientific Reports. 7: 2493. PMID 28559586 DOI: 10.1038/S41598-017-02370-3  0.354
2016 Owen MC, Strodel B, Csizmadia IG, Viskolcz B. Radical Formation Initiates Solvent-Dependent Unfolding and β-Sheet Formation in a Model Helical Peptide. The Journal of Physical Chemistry. B. PMID 27169334 DOI: 10.1021/Acs.Jpcb.6B00174  0.387
2016 Barz B, Strodel B. Understanding Amyloid-β Oligomerization at the Molecular Level: the Role of the Fibril Surface. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27135646 DOI: 10.1002/Chem.201601701  0.467
2016 Wallin C, Kulkarni YS, Abelein A, Jarvet J, Liao Q, Strodel B, Olsson L, Luo J, Abrahams JP, Sholts SB, Roos PM, Kamerlin SC, Gräslund A, Wärmländer SK. Characterization of Mn(II) ion binding to the amyloid-β peptide in Alzheimer's disease. Journal of Trace Elements in Medicine and Biology : Organ of the Society For Minerals and Trace Elements (Gms). PMID 27085215 DOI: 10.1016/J.Jtemb.2016.03.009  0.389
2016 Nagel-Steger L, Owen MC, Strodel B. An Account of Amyloid Oligomers: Facts and Figures Obtained from Experiments and Simulations. Chembiochem : a European Journal of Chemical Biology. 17: 657-76. PMID 26910367 DOI: 10.1002/cbic.201500623  0.411
2015 Carballo-Pacheco M, Ismail AE, Strodel B. Oligomer Formation of Toxic and Functional Amyloid Peptides Studied with Atomistic Simulations. The Journal of Physical Chemistry. B. 119: 9696-705. PMID 26130191 DOI: 10.1021/Acs.Jpcb.5B04822  0.517
2014 Barz B, Olubiyi OO, Strodel B. Early amyloid β-protein aggregation precedes conformational change. Chemical Communications (Cambridge, England). 50: 5373-5. PMID 24471163 DOI: 10.1039/C3Cc48704K  0.456
2014 Barz B, Wales DJ, Strodel B. A kinetic approach to the sequence-aggregation relationship in disease-related protein assembly. The Journal of Physical Chemistry. B. 118: 1003-11. PMID 24401100 DOI: 10.1021/Jp412648U  0.632
2013 Poojari C, Xiao D, Batista VS, Strodel B. Membrane permeation induced by aggregates of human islet amyloid polypeptides. Biophysical Journal. 105: 2323-32. PMID 24268144 DOI: 10.1016/J.Bpj.2013.09.045  0.343
2013 Sharma OP, Vadlamudi Y, Liao Q, Strodel B, Suresh Kumar M. Molecular modeling, dynamics, and an insight into the structural inhibition of cofactor independent phosphoglycerate mutase isoform 1 from Wuchereria bancrofti using cheminformatics and mutational studies. Journal of Biomolecular Structure & Dynamics. 31: 765-78. PMID 22908983 DOI: 10.1080/07391102.2012.709460  0.301
2011 Klenin K, Strodel B, Wales DJ, Wenzel W. Modelling proteins: conformational sampling and reconstruction of folding kinetics. Biochimica Et Biophysica Acta. 1814: 977-1000. PMID 20851219 DOI: 10.1016/J.Bbapap.2010.09.006  0.465
2010 Strodel B, Lee JW, Whittleston CS, Wales DJ. Transmembrane structures for Alzheimer's Aβ(1-42) oligomers. Journal of the American Chemical Society. 132: 13300-12. PMID 20822103 DOI: 10.1021/Ja103725C  0.572
2010 Bauer MS, Strodel B, Fejer SN, Koslover EF, Wales DJ. Interpolation schemes for peptide rearrangements. The Journal of Chemical Physics. 132: 054101. PMID 20136299 DOI: 10.1063/1.3273617  0.449
2010 Ma?olepsza E, Strodel B, Khalili M, Trygubenko S, Fejer SN, Wales DJ. Symmetrization of the AMBER and CHARMM force fields. Journal of Computational Chemistry. 31: 1402-9. PMID 20082393 DOI: 10.1002/Jcc.21425  0.435
2008 Strodel B, Wales DJ. Implicit Solvent Models and the Energy Landscape for Aggregation of the Amyloidogenic KFFE Peptide. Journal of Chemical Theory and Computation. 4: 657-72. PMID 26620941 DOI: 10.1021/Ct700305W  0.63
2008 Strodel B, Fitzpatrick AW, Vendruscolo M, Dobson CM, Wales DJ. Characterizing the first steps of amyloid formation for the ccbeta peptide. The Journal of Physical Chemistry. B. 112: 9998-10004. PMID 18646795 DOI: 10.1021/Jp801222X  0.501
2007 Strodel B, Whittleston CS, Wales DJ. Thermodynamics and kinetics of aggregation for the GNNQQNY peptide. Journal of the American Chemical Society. 129: 16005-14. PMID 18052168 DOI: 10.1021/Ja075346P  0.571
2006 Uspenskiy I, Strodel B, Stock G. Classical Calculation of Transient Absorption Spectra Monitoring Ultrafast Electron Transfer Processes. Journal of Chemical Theory and Computation. 2: 1605-17. PMID 26627031 DOI: 10.1021/Ct6002127  0.504
2006 Strodel B, Stock G. Quantum modeling of transient infrared spectra reflecting photoinduced electron-transfer dynamics. The Journal of Chemical Physics. 124: 114105. PMID 16555872 DOI: 10.1063/1.2166629  0.492
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