| Year |
Citation |
Score |
| 2022 |
Khemtemourian L, Fatafta H, Davion B, Lecomte S, Castano S, Strodel B. Structural Dissection of the First Events Following Membrane Binding of the Islet Amyloid Polypeptide. Frontiers in Molecular Biosciences. 9: 849979. PMID 35372496 DOI: 10.3389/fmolb.2022.849979 |
0.34 |
|
| 2022 |
Samantray S, Schumann W, Illig AM, Carballo-Pacheco M, Paul A, Barz B, Strodel B. Molecular Dynamics Simulations of Protein Aggregation: Protocols for Simulation Setup and Analysis with Markov State Models and Transition Networks. Methods in Molecular Biology (Clifton, N.J.). 2340: 235-279. PMID 35167078 DOI: 10.1007/978-1-0716-1546-1_12 |
0.776 |
|
| 2021 |
Samantray S, Olubiyi OO, Strodel B. The Influences of Sulphation, Salt Type, and Salt Concentration on the Structural Heterogeneity of Glycosaminoglycans. International Journal of Molecular Sciences. 22. PMID 34768961 DOI: 10.3390/ijms222111529 |
0.723 |
|
| 2021 |
Fatafta H, Samantray S, Sayyed-Ahmad A, Coskuner-Weber O, Strodel B. Molecular simulations of IDPs: From ensemble generation to IDP interactions leading to disorder-to-order transitions. Progress in Molecular Biology and Translational Science. 183: 135-185. PMID 34656328 DOI: 10.1016/bs.pmbts.2021.06.003 |
0.736 |
|
| 2021 |
Fatafta H, Khaled M, Owen MC, Sayyed-Ahmad A, Strodel B. Amyloid-β peptide dimers undergo a random coil to β-sheet transition in the aqueous phase but not at the neuronal membrane. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34544868 DOI: 10.1073/pnas.2106210118 |
0.366 |
|
| 2021 |
Willbold D, Strodel B, Schröder GF, Hoyer W, Heise H. Amyloid-type Protein Aggregation and Prion-like Properties of Amyloids. Chemical Reviews. 121: 8285-8307. PMID 34137605 DOI: 10.1021/acs.chemrev.1c00196 |
0.424 |
|
| 2021 |
Paul A, Samantray S, Anteghini M, Khaled M, Strodel B. Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment. Chemical Science. 12: 6652-6669. PMID 34040740 DOI: 10.1039/d0sc04657d |
0.778 |
|
| 2021 |
Samantray S, Strodel B. The Effects of Different Glycosaminoglycans on the Structure and Aggregation of the Amyloid-β (16-22) Peptide. The Journal of Physical Chemistry. B. 125: 5511-5525. PMID 34027669 DOI: 10.1021/acs.jpcb.1c00868 |
0.766 |
|
| 2020 |
Samantray S, Yin F, Kav B, Strodel B. Different Force Fields Give Rise to Different Amyloid Aggregation Pathways in Molecular Dynamics Simulations. Journal of Chemical Information and Modeling. PMID 33174726 DOI: 10.1021/acs.jcim.0c01063 |
0.777 |
|
| 2020 |
Deike S, Rothemund S, Voigt B, Samantray S, Strodel B, Binder WH. β-Turn mimetic synthetic peptides as amyloid-β aggregation inhibitors. Bioorganic Chemistry. 101: 104012. PMID 32683138 DOI: 10.1016/j.bioorg.2020.104012 |
0.752 |
|
| 2020 |
La Rosa C, Condorelli M, Compagnini G, Lolicato F, Milardi D, Do TN, Karttunen M, Pannuzzo M, Ramamoorthy A, Fraternali F, Collu F, Rezaei H, Strodel B, Raudino A. Symmetry-breaking transitions in the early steps of protein self-assembly. European Biophysics Journal : Ebj. PMID 32123956 DOI: 10.1007/S00249-020-01424-1 |
0.468 |
|
| 2020 |
Fatafta H, Poojari C, Sayyed-Ahmad A, Strodel B, Owen MC. Role of Oxidized Gly25, Gly29, and Gly33 Residues on the Interactions of Aβ with Lipid Membranes. Acs Chemical Neuroscience. PMID 31939658 DOI: 10.1021/Acschemneuro.9B00558 |
0.383 |
|
| 2019 |
Zhang T, Loschwitz J, Strodel B, Nagel-Steger L, Willbold D. Interference with Amyloid-β Nucleation by Transient Ligand Interaction. Molecules (Basel, Switzerland). 24. PMID 31195746 DOI: 10.3390/molecules24112129 |
0.434 |
|
| 2019 |
Owen MC, Gnutt D, Gao M, Wärmländer SKTS, Jarvet J, Gräslund A, Winter R, Ebbinghaus S, Strodel B. Effects of in vivo conditions on amyloid aggregation. Chemical Society Reviews. 48: 3946-3996. PMID 31192324 DOI: 10.1039/C8Cs00034D |
0.416 |
|
| 2018 |
Carballo-Pacheco M, Ismail AE, Strodel B. On the Applicability of Force Fields to Study the Aggregation of Amyloidogenic Peptides Using Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. PMID 30336669 DOI: 10.1021/Acs.Jctc.8B00579 |
0.546 |
|
| 2018 |
Liao Q, Owen MC, Bali S, Barz B, Strodel B. Aβ under stress: the effects of acidosis, Cu-binding, and oxidation on amyloid β-peptide dimers. Chemical Communications (Cambridge, England). PMID 29947363 DOI: 10.1039/C8Cc02263A |
0.352 |
|
| 2018 |
Österlund N, Kulkarni YS, Misiaszek AD, Wallin C, Krüger DM, Liao Q, Mashayekhy Rad F, Jarvet J, Strodel B, Wärmländer SKTS, Ilag LL, Kamerlin SCL, Gräslund A. Amyloid-β peptide interactions with amphiphilic surfactants: electrostatic and hydrophobic effects. Acs Chemical Neuroscience. PMID 29683649 DOI: 10.1021/Acschemneuro.8B00065 |
0.445 |
|
| 2018 |
Uluca B, Viennet T, Petrović D, Shaykhalishahi H, Weirich F, Gönülalan A, Strodel B, Etzkorn M, Hoyer W, Heise H. DNP-Enhanced MAS NMR: A Tool to Snapshot Conformational Ensembles of α-Synuclein in Different States. Biophysical Journal. 114: 1614-1623. PMID 29642031 DOI: 10.1016/J.Bpj.2018.02.011 |
0.322 |
|
| 2018 |
Owen MC, Kulig W, Poojari C, Rog T, Strodel B. Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer. Biochimica Et Biophysica Acta. Biomembranes. 1860: 1709-1720. PMID 29626441 DOI: 10.1016/j.bbamem.2018.03.026 |
0.378 |
|
| 2017 |
Barz B, Liao Q, Strodel B. Pathways of amyloid-β aggregation depend on oligomer shape. Journal of the American Chemical Society. PMID 29235346 DOI: 10.1021/Jacs.7B10343 |
0.519 |
|
| 2017 |
Wolff M, Zhang-Haagen B, Decker C, Barz B, Schneider M, Biehl R, Radulescu A, Strodel B, Willbold D, Nagel-Steger L. Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution. Scientific Reports. 7: 2493. PMID 28559586 DOI: 10.1038/S41598-017-02370-3 |
0.354 |
|
| 2016 |
Owen MC, Strodel B, Csizmadia IG, Viskolcz B. Radical Formation Initiates Solvent-Dependent Unfolding and β-Sheet Formation in a Model Helical Peptide. The Journal of Physical Chemistry. B. PMID 27169334 DOI: 10.1021/Acs.Jpcb.6B00174 |
0.387 |
|
| 2016 |
Barz B, Strodel B. Understanding Amyloid-β Oligomerization at the Molecular Level: the Role of the Fibril Surface. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27135646 DOI: 10.1002/Chem.201601701 |
0.467 |
|
| 2016 |
Wallin C, Kulkarni YS, Abelein A, Jarvet J, Liao Q, Strodel B, Olsson L, Luo J, Abrahams JP, Sholts SB, Roos PM, Kamerlin SC, Gräslund A, Wärmländer SK. Characterization of Mn(II) ion binding to the amyloid-β peptide in Alzheimer's disease. Journal of Trace Elements in Medicine and Biology : Organ of the Society For Minerals and Trace Elements (Gms). PMID 27085215 DOI: 10.1016/J.Jtemb.2016.03.009 |
0.389 |
|
| 2016 |
Nagel-Steger L, Owen MC, Strodel B. An Account of Amyloid Oligomers: Facts and Figures Obtained from Experiments and Simulations. Chembiochem : a European Journal of Chemical Biology. 17: 657-76. PMID 26910367 DOI: 10.1002/cbic.201500623 |
0.411 |
|
| 2015 |
Carballo-Pacheco M, Ismail AE, Strodel B. Oligomer Formation of Toxic and Functional Amyloid Peptides Studied with Atomistic Simulations. The Journal of Physical Chemistry. B. 119: 9696-705. PMID 26130191 DOI: 10.1021/Acs.Jpcb.5B04822 |
0.517 |
|
| 2014 |
Barz B, Olubiyi OO, Strodel B. Early amyloid β-protein aggregation precedes conformational change. Chemical Communications (Cambridge, England). 50: 5373-5. PMID 24471163 DOI: 10.1039/C3Cc48704K |
0.456 |
|
| 2014 |
Barz B, Wales DJ, Strodel B. A kinetic approach to the sequence-aggregation relationship in disease-related protein assembly. The Journal of Physical Chemistry. B. 118: 1003-11. PMID 24401100 DOI: 10.1021/Jp412648U |
0.632 |
|
| 2013 |
Poojari C, Xiao D, Batista VS, Strodel B. Membrane permeation induced by aggregates of human islet amyloid polypeptides. Biophysical Journal. 105: 2323-32. PMID 24268144 DOI: 10.1016/J.Bpj.2013.09.045 |
0.343 |
|
| 2013 |
Sharma OP, Vadlamudi Y, Liao Q, Strodel B, Suresh Kumar M. Molecular modeling, dynamics, and an insight into the structural inhibition of cofactor independent phosphoglycerate mutase isoform 1 from Wuchereria bancrofti using cheminformatics and mutational studies. Journal of Biomolecular Structure & Dynamics. 31: 765-78. PMID 22908983 DOI: 10.1080/07391102.2012.709460 |
0.301 |
|
| 2011 |
Klenin K, Strodel B, Wales DJ, Wenzel W. Modelling proteins: conformational sampling and reconstruction of folding kinetics. Biochimica Et Biophysica Acta. 1814: 977-1000. PMID 20851219 DOI: 10.1016/J.Bbapap.2010.09.006 |
0.465 |
|
| 2010 |
Strodel B, Lee JW, Whittleston CS, Wales DJ. Transmembrane structures for Alzheimer's Aβ(1-42) oligomers. Journal of the American Chemical Society. 132: 13300-12. PMID 20822103 DOI: 10.1021/Ja103725C |
0.572 |
|
| 2010 |
Bauer MS, Strodel B, Fejer SN, Koslover EF, Wales DJ. Interpolation schemes for peptide rearrangements. The Journal of Chemical Physics. 132: 054101. PMID 20136299 DOI: 10.1063/1.3273617 |
0.449 |
|
| 2010 |
Ma?olepsza E, Strodel B, Khalili M, Trygubenko S, Fejer SN, Wales DJ. Symmetrization of the AMBER and CHARMM force fields. Journal of Computational Chemistry. 31: 1402-9. PMID 20082393 DOI: 10.1002/Jcc.21425 |
0.435 |
|
| 2008 |
Strodel B, Wales DJ. Implicit Solvent Models and the Energy Landscape for Aggregation of the Amyloidogenic KFFE Peptide. Journal of Chemical Theory and Computation. 4: 657-72. PMID 26620941 DOI: 10.1021/Ct700305W |
0.63 |
|
| 2008 |
Strodel B, Fitzpatrick AW, Vendruscolo M, Dobson CM, Wales DJ. Characterizing the first steps of amyloid formation for the ccbeta peptide. The Journal of Physical Chemistry. B. 112: 9998-10004. PMID 18646795 DOI: 10.1021/Jp801222X |
0.501 |
|
| 2007 |
Strodel B, Whittleston CS, Wales DJ. Thermodynamics and kinetics of aggregation for the GNNQQNY peptide. Journal of the American Chemical Society. 129: 16005-14. PMID 18052168 DOI: 10.1021/Ja075346P |
0.571 |
|
| 2006 |
Uspenskiy I, Strodel B, Stock G. Classical Calculation of Transient Absorption Spectra Monitoring Ultrafast Electron Transfer Processes. Journal of Chemical Theory and Computation. 2: 1605-17. PMID 26627031 DOI: 10.1021/Ct6002127 |
0.504 |
|
| 2006 |
Strodel B, Stock G. Quantum modeling of transient infrared spectra reflecting photoinduced electron-transfer dynamics. The Journal of Chemical Physics. 124: 114105. PMID 16555872 DOI: 10.1063/1.2166629 |
0.492 |
|
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