Alex Bateman - Publications

Affiliations: 
 
Website:
http://www.sanger.ac.uk/research/faculty/abateman/

108 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, et al. The Pfam protein families database in 2019. Nucleic Acids Research. PMID 30357350 DOI: 10.1093/nar/gky995  0.4
2017 Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Research. PMID 29112718 DOI: 10.1093/nar/gkx1038  0.4
2017 Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/nar/gkw1008  1
2015 Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research. PMID 26673716 DOI: 10.1093/nar/gkv1344  1
2015 Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, et al. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database : the Journal of Biological Databases and Curation. 2015: bav063. PMID 26284514 DOI: 10.1093/database/bav063  1
2015 Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR. HMMER web server: 2015 update. Nucleic Acids Research. 43: W30-8. PMID 25943547 DOI: 10.1093/nar/gkv397  1
2015 Prakash A, Bateman A. Domain atrophy creates rare cases of functional partial protein domains. Genome Biology. 16: 88. PMID 25924720 DOI: 10.1186/s13059-015-0655-8  1
2015 Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, ... ... Bateman A, et al. Key challenges for the creation and maintenance of specialist protein resources. Proteins. 83: 1005-13. PMID 25820941 DOI: 10.1002/prot.24803  1
2015 Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, et al. The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Research. 43: D213-21. PMID 25428371 DOI: 10.1093/nar/gku1243  1
2015 Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Rfam 12.0: updates to the RNA families database. Nucleic Acids Research. 43: D130-7. PMID 25392425 DOI: 10.1093/nar/gku1063  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/nar/gku991  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093l/narlgku991  1
2015 Bateman A, Martin MJ, O'Donovan C, Magrane M, Apweiler R, Alpi E, Antunes R, Arganiska J, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, Chavali G, Cibrian-Uhalte E, et al. UniProt: A hub for protein information Nucleic Acids Research. 43: D204-D212. DOI: 10.1093/nar/gku989  1
2014 Rawlings ND, Barrett AJ, Bateman A. Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 1.25.1-1.25.33. PMID 25501939 DOI: 10.1002/0471250953.bi0125s48  1
2014 Das D, Murzin AG, Rawlings ND, Finn RD, Coggill P, Bateman A, Godzik A, Aravind L. Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis. Bmc Bioinformatics. 15: 75. PMID 24646163 DOI: 10.1186/1471-2105-15-75  1
2014 Finn RD, Miller BL, Clements J, Bateman A. iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Research. 42: D364-73. PMID 24297255 DOI: 10.1093/nar/gkt1210  1
2014 Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Pfam: the protein families database. Nucleic Acids Research. 42: D222-30. PMID 24288371 DOI: 10.1093/nar/gkt1223  1
2014 Apweiler R, Bateman A, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, Alpi E, Antunes R, Arganiska J, Casanova EB, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, et al. Activities at the Universal Protein Resource (UniProt) Nucleic Acids Research. 42: D191-D198. PMID 24253303 DOI: 10.1093/nar/gkt1140  1
2014 Schreiber F, Patricio M, Muffato M, Pignatelli M, Bateman A. TreeFam v9: a new website, more species and orthology-on-the-fly. Nucleic Acids Research. 42: D922-5. PMID 24194607 DOI: 10.1093/nar/gkt1055  1
2014 Rawlings ND, Waller M, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research. 42: D503-9. PMID 24157837 DOI: 10.1093/nar/gkt953  1
2013 Gaudet P, Munoz-Torres M, Robinson-Rechavi M, Attwood T, Bateman A, Cherry JM, Kania R, O'Donovan C, Yamasaki C. DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. Database : the Journal of Biological Databases and Curation. 2013: bat077. PMID 24319113 DOI: 10.1093/database/bat077  1
2013 Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A. LUD, a new protein domain associated with lactate utilization. Bmc Bioinformatics. 14: 341. PMID 24274019 DOI: 10.1186/1471-2105-14-341  1
2013 Eberhardt RY, Chang Y, Bateman A, Murzin AG, Axelrod HL, Hwang WC, Aravind L. Filling out the structural map of the NTF2-like superfamily. Bmc Bioinformatics. 14: 327. PMID 24246060 DOI: 10.1186/1471-2105-14-327  1
2013 Bateman A, Kelso J, Mietchen D, Macintyre G, Di Domenico T, Abeel T, Logan DW, Radivojac P, Rost B. ISCB computational biology Wikipedia competition. Plos Computational Biology. 9: e1003242. PMID 24068913 DOI: 10.1371/journal.pcbi.1003242  1
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, ... ... Bateman A, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/journal.pbio.1001638  1
2013 Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L, Murzin AG, Bateman A. Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. Bmc Bioinformatics. 14: 265. PMID 24004689 DOI: 10.1186/1471-2105-14-265  1
2013 Buljan M, Chalancon G, Dunker AK, Bateman A, Balaji S, Fuxreiter M, Babu MM. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Current Opinion in Structural Biology. 23: 443-50. PMID 23706950 DOI: 10.1016/j.sbi.2013.03.006  1
2013 Mistry J, Coggill P, Eberhardt RY, Deiana A, Giansanti A, Finn RD, Bateman A, Punta M. The challenge of increasing Pfam coverage of the human proteome. Database : the Journal of Biological Databases and Curation. 2013: bat023. PMID 23603847 DOI: 10.1093/database/bat023  1
2013 Mistry J, Finn RD, Eddy SR, Bateman A, Punta M. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Research. 41: e121. PMID 23598997 DOI: 10.1093/nar/gkt263  1
2013 Barquist L, Langridge GC, Turner DJ, Phan MD, Turner AK, Bateman A, Parkhill J, Wain J, Gardner PP. A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Research. 41: 4549-64. PMID 23470992 DOI: 10.1093/nar/gkt148  1
2013 Eberhardt RY, Bartholdson SJ, Punta M, Bateman A. The SHOCT domain: a widespread domain under-represented in model organisms. Plos One. 8: e57848. PMID 23451277 DOI: 10.1371/journal.pone.0057848  1
2013 Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, ... ... Bateman A, et al. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology. 14: R11. PMID 23375108 DOI: 10.1186/gb-2013-14-2-r11  1
2013 Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Rfam 11.0: 10 years of RNA families. Nucleic Acids Research. 41: D226-32. PMID 23125362 DOI: 10.1093/nar/gks1005  1
2012 Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D'Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, et al. Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference. Database : the Journal of Biological Databases and Curation. 2012: bas036. PMID 23110974 DOI: 10.1093/database/bas036  1
2012 Buljan M, Chalancon G, Eustermann S, Wagner GP, Fuxreiter M, Bateman A, Babu MM. Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks. Molecular Cell. 46: 871-83. PMID 22749400 DOI: 10.1016/j.molcel.2012.05.039  1
2012 Coggill P, Bateman A. The YARHG domain: an extracellular domain in search of a function. Plos One. 7: e35575. PMID 22615736 DOI: 10.1371/journal.pone.0035575  1
2012 Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A. AntiFam: a tool to help identify spurious ORFs in protein annotation. Database : the Journal of Biological Databases and Curation. 2012: bas003. PMID 22434837 DOI: 10.1093/database/bas003  1
2012 Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, O'Donovan C, Xenarios L, Gaudet P. Biocurators and biocuration: surveying the 21st century challenges. Database : the Journal of Biological Databases and Curation. 2012: bar059. PMID 22434828 DOI: 10.1093/database/bar059  1
2012 Peng H, Bateman A, Valencia A, Wren JD. Bioimage informatics: a new category in Bioinformatics. Bioinformatics (Oxford, England). 28: 1057. PMID 22399678 DOI: 10.1093/bioinformatics/bts111  1
2012 Finn RD, Gardner PP, Bateman A. Making your database available through Wikipedia: the pros and cons. Nucleic Acids Research. 40: D9-12. PMID 22144683 DOI: 10.1093/nar/gkr1195  1
2012 Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, et al. The Pfam protein families database. Nucleic Acids Research. 40: D290-301. PMID 22127870 DOI: 10.1093/nar/gkr1065  1
2012 Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research. 40: D306-12. PMID 22096229 DOI: 10.1093/nar/gkr948  1
2012 Rawlings ND, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research. 40: D343-50. PMID 22086950 DOI: 10.1093/nar/gkr987  1
2011 Jensen LJ, Bateman A. The rise and fall of supervised machine learning techniques. Bioinformatics (Oxford, England). 27: 3331-2. PMID 22101152 DOI: 10.1093/bioinformatics/btr585  1
2011 Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/rna.2750811  1
2011 Rawlings ND, Barrett AJ, Bateman A. Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes. The Journal of Biological Chemistry. 286: 38321-8. PMID 21832066 DOI: 10.1074/jbc.M111.260026  1
2011 Woodwark C, Bateman A. The characterisation of three types of genes that overlie copy number variable regions. Plos One. 6: e14814. PMID 21637334 DOI: 10.1371/journal.pone.0014814  1
2011 Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z. RNIE: genome-wide prediction of bacterial intrinsic terminators. Nucleic Acids Research. 39: 5845-52. PMID 21478170 DOI: 10.1093/nar/gkr168  1
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Database : the Journal of Biological Databases and Curation. 2011: baq027. PMID 21205783 DOI: 10.1093/database/baq027  1
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research. 39: D7-10. PMID 21097465 DOI: 10.1093/nar/gkq1173  1
2011 Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/nar/gkq1129  1
2010 Bateman A, Logan DW. Time to underpin Wikipedia wisdom. Nature. 468: 765. PMID 21150981 DOI: 10.1038/468765c  1
2010 Tewari R, Straschil U, Bateman A, Böhme U, Cherevach I, Gong P, Pain A, Billker O. The systematic functional analysis of Plasmodium protein kinases identifies essential regulators of mosquito transmission. Cell Host & Microbe. 8: 377-87. PMID 20951971 DOI: 10.1016/j.chom.2010.09.006  1
2010 Bakolitsa C, Bateman A, Jin KK, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chiu HJ, Clayton T, Das D, et al. The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1198-204. PMID 20944211 DOI: 10.1107/S1744309109025196  1
2010 Bateman A, Coggill P, Finn RD. DUFs: families in search of function. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1148-52. PMID 20944204 DOI: 10.1107/S1744309110001685  1
2010 Logan DW, Sandal M, Gardner PP, Manske M, Bateman A. Ten simple rules for editing Wikipedia. Plos Computational Biology. 6. PMID 20941386 DOI: 10.1371/journal.pcbi.1000941  1
2010 Buljan M, Frankish A, Bateman A. Quantifying the mechanisms of domain gain in animal proteins. Genome Biology. 11: R74. PMID 20633280 DOI: 10.1186/gb-2010-11-7-r74  1
2010 Bateman A. Curators of the world unite: the International Society of Biocuration. Bioinformatics (Oxford, England). 26: 991. PMID 20305270 DOI: 10.1093/bioinformatics/btq101  1
2010 Schuster-Böckler B, Conrad D, Bateman A. Dosage sensitivity shapes the evolution of copy-number varied regions. Plos One. 5: e9474. PMID 20224824 DOI: 10.1371/journal.pone.0009474  1
2010 Gardner PP, Bateman A, Poole AM. SnoPatrol: how many snoRNA genes are there? Journal of Biology. 9: 4. PMID 20122292 DOI: 10.1186/jbiol211  1
2010 Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. The Pfam protein families database. Nucleic Acids Research. 38: D211-22. PMID 19920124 DOI: 10.1093/nar/gkp985  1
2010 Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, et al. Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. Journal of Molecular Biology. 396: 31-46. PMID 19913036 DOI: 10.1016/j.jmb.2009.11.006  1
2010 Rawlings ND, Barrett AJ, Bateman A. MEROPS: the peptidase database. Nucleic Acids Research. 38: D227-33. PMID 19892822 DOI: 10.1093/nar/gkp971  1
2009 Chang C, Coggill P, Bateman A, Finn RD, Cymborowski M, Otwinowski Z, Minor W, Volkart L, Joachimiak A. The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes. Bmc Structural Biology. 9: 75. PMID 20017931 DOI: 10.1186/1472-6807-9-75  1
2009 Bateman A, Bourne PE. Ten simple rules for chairing a scientific session. Plos Computational Biology. 5: e1000517. PMID 19779547 DOI: 10.1371/journal.pcbi.1000517  1
2009 Rawlings ND, Bateman A. Pepsin homologues in bacteria. Bmc Genomics. 10: 437. PMID 19758436 DOI: 10.1186/1471-2164-10-437  1
2009 Buljan M, Bateman A. The evolution of protein domain families. Biochemical Society Transactions. 37: 751-5. PMID 19614588 DOI: 10.1042/BST0370751  1
2009 Bateman A, Wood M. Cloud computing. Bioinformatics (Oxford, England). 25: 1475. PMID 19435745 DOI: 10.1093/bioinformatics/btp274  1
2009 Bateman A, Quackenbush J. Bioinformatics for next generation sequencing. Bioinformatics (Oxford, England). 25: 429. PMID 19202193 DOI: 10.1093/bioinformatics/btp037  1
2009 Bateman A, Finn RD, Sims PJ, Wiedmer T, Biegert A, Söding J. Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics (Oxford, England). 25: 159-62. PMID 19010806 DOI: 10.1093/bioinformatics/btn595  1
2009 Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/nar/gkn766  1
2009 Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, et al. InterPro: the integrative protein signature database. Nucleic Acids Research. 37: D211-5. PMID 18940856 DOI: 10.1093/nar/gkn785  1
2009 Gardner PP, Bateman AG. A home for RNA families at RNA Biology Rna Biology. 6: 2.  1
2008 Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. The RNA WikiProject: community annotation of RNA families. Rna (New York, N.Y.). 14: 2462-4. PMID 18945806 DOI: 10.1261/rna.1200508  1
2008 Wren JD, Bateman A. Databases, data tombs and dust in the wind. Bioinformatics (Oxford, England). 24: 2127-8. PMID 18819940 DOI: 10.1093/bioinformatics/btn464  1
2008 Coggill P, Finn RD, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18819075 DOI: 10.1002/0471250953.bi0205s23  1
2008 Edwards CA, Mungall AJ, Matthews L, Ryder E, Gray DJ, Pask AJ, Shaw G, Graves JA, Rogers J, Dunham I, Renfree MB, Ferguson-Smith AC. The evolution of the DLK1-DIO3 imprinted domain in mammals. Plos Biology. 6: e135. PMID 18532878 DOI: 10.1371/journal.pbio.0060135  1
2008 Sammut SJ, Finn RD, Bateman A. Pfam 10 years on: 10,000 families and still growing. Briefings in Bioinformatics. 9: 210-9. PMID 18344544 DOI: 10.1093/bib/bbn010  1
2008 Bushell KM, Söllner C, Schuster-Boeckler B, Bateman A, Wright GJ. Large-scale screening for novel low-affinity extracellular protein interactions. Genome Research. 18: 622-30. PMID 18296487 DOI: 10.1101/gr.7187808  1
2008 Schuster-Böckler B, Bateman A. Protein interactions in human genetic diseases. Genome Biology. 9: R9. PMID 18199329 DOI: 10.1186/gb-2008-9-1-r9  1
2008 Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A. The Pfam protein families database. Nucleic Acids Research. 36: D281-8. PMID 18039703 DOI: 10.1093/nar/gkm960  1
2008 Bateman A. Editorial Nucleic Acids Research. 36: D1. DOI: 10.1093/nar/gkm1139  1
2007 Schuster-Böckler B, Bateman A. An introduction to hidden Markov models. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Appendix 3A. PMID 18428778 DOI: 10.1002/0471250953.bia03as18  1
2007 Mistry J, Bateman A, Finn RD. Predicting active site residue annotations in the Pfam database. Bmc Bioinformatics. 8: 298. PMID 17688688 DOI: 10.1186/1471-2105-8-298  1
2007 Schuster-Böckler B, Bateman A. Reuse of structural domain-domain interactions in protein networks. Bmc Bioinformatics. 8: 259. PMID 17640363 DOI: 10.1186/1471-2105-8-259  1
2007 Vanholme B, Grunewald W, Bateman A, Kohchi T, Gheysen G. The tify family previously known as ZIM. Trends in Plant Science. 12: 239-44. PMID 17499004 DOI: 10.1016/j.tplants.2007.04.004  1
2007 Bateman A, Finn RD. SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics (Oxford, England). 23: 809-14. PMID 17277330 DOI: 10.1093/bioinformatics/btm034  1
2007 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, et al. New developments in the InterPro database. Nucleic Acids Research. 35: D224-8. PMID 17202162 DOI: 10.1093/nar/gkl841  1
2006 Bateman A, Valencia A. Structural genomics meets computational biology. Bioinformatics (Oxford, England). 22: 2319. PMID 17032684 DOI: 10.1093/bioinformatics/btl426  1
2006 Seitan VC, Banks P, Laval S, Majid NA, Dorsett D, Rana A, Smith J, Bateman A, Krpic S, Hostert A, Rollins RA, Erdjument-Bromage H, Tempst P, Benard CY, Hekimi S, et al. Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance. Plos Biology. 4: e242. PMID 16802858 DOI: 10.1371/journal.pbio.0040242  1
2006 Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/nar/gkj149  1
2006 Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research. 34: D140-4. PMID 16381832 DOI: 10.1093/nar/gkj112  1
2006 Valencia A, Bateman A. Software patents in Bioinformatics Bioinformatics. 22: 1415. DOI: 10.1093/bioinformatics/btl166  1
2006 Bateman A. Bioinformatics - The new home for protein sequence motifs Bioinformatics. 22: 2. DOI: 10.1093/bioinformatics/bti755  1
2005 Schuster-Böckler B, Bateman A. Visualizing profile-profile alignment: pairwise HMM logos. Bioinformatics (Oxford, England). 21: 2912-3. PMID 15827079 DOI: 10.1093/bioinformatics/bti434  1
2005 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/nar/gki106  1
2005 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/nar/gki081  1
2005 Bateman A, Holden MT, Yeats C. The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. Bioinformatics (Oxford, England). 21: 1301-3. PMID 15598841 DOI: 10.1093/bioinformatics/bti206  1
2005 Finn RD, Marshall M, Bateman A. iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics (Oxford, England). 21: 410-2. PMID 15353450 DOI: 10.1093/bioinformatics/bti011  0.4
2005 Bateman A, Valencia A. An update from the Bioinformatics Editors Bioinformatics. 21: 4319. DOI: 10.1093/bioinformatics/bti768  1
2004 Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121  1
2003 Finn R, Griffiths-Jones S, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18428696 DOI: 10.1002/0471250953.bi0205s01  1
2003 Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/nar/gkg006  1
2003 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/nar/gkg046  1
2002 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031  1
2002 Griffiths-Jones S, Bateman A. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics (Oxford, England). 18: 1243-9. PMID 12217916  1
2002 De Camilli P, Chen H, Hyman J, Panepucci E, Bateman A, Brunger AT. The ENTH domain. Febs Letters. 513: 11-8. PMID 11911874 DOI: 10.1016/S0014-5793(01)03306-3  1
2002 Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314  1
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