| Year |
Citation |
Score |
| 2024 |
Pei J, Andreeva A, Chuguransky S, Lázaro Pinto B, Paysan-Lafosse T, Dustin Schaeffer R, Bateman A, Cong Q, Grishin NV. Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models. Journal of Molecular Biology. 168764. PMID 39197652 DOI: 10.1016/j.jmb.2024.168764 |
0.397 |
|
| 2023 |
Ormazábal A, Carletti MS, Saldaño TE, Gonzalez Buitron M, Marchetti J, Palopoli N, Bateman A. Expanding the repertoire of human tandem repeat RNA-binding proteins. Plos One. 18: e0290890. PMID 37729217 DOI: 10.1371/journal.pone.0290890 |
0.331 |
|
| 2023 |
Durairaj J, Waterhouse AM, Mets T, Brodiazhenko T, Abdullah M, Studer G, Tauriello G, Akdel M, Andreeva A, Bateman A, Tenson T, Hauryliuk V, Schwede T, Pereira J. Uncovering new families and folds in the natural protein universe. Nature. PMID 37704037 DOI: 10.1038/s41586-023-06622-3 |
0.398 |
|
| 2023 |
Miguel Monzon A, Arrías PN, Elofsson A, Mier P, Andrade-Navarro MA, Bevilacqua M, Clementel D, Bateman A, Hirsh L, Silvina Fornasari M, Parisi G, Piovesan D, Kajava AV, Tosatto SCE. A STRP-ed definition of Structured Tandem Repeats in Proteins. Journal of Structural Biology. 108023. PMID 37652396 DOI: 10.1016/j.jsb.2023.108023 |
0.322 |
|
| 2022 |
Monzon V, Haft DH, Bateman A. Folding the unfoldable: using AlphaFold to explore spurious proteins. Bioinformatics Advances. 2: vbab043. PMID 36699409 DOI: 10.1093/bioadv/vbab043 |
0.397 |
|
| 2022 |
Monzon V, Paysan-Lafosse T, Wood V, Bateman A. Reciprocal best structure hits: using AlphaFold models to discover distant homologues. Bioinformatics Advances. 2: vbac072. PMID 36408459 DOI: 10.1093/bioadv/vbac072 |
0.335 |
|
| 2022 |
Paysan-Lafosse T, Blum M, Chuguransky S, Grego T, Pinto BL, Salazar GA, Bileschi ML, Bork P, Bridge A, Colwell L, Gough J, Haft DH, Letunić I, Marchler-Bauer A, Mi H, ... ... Bateman A, et al. InterPro in 2022. Nucleic Acids Research. PMID 36350672 DOI: 10.1093/nar/gkac993 |
0.689 |
|
| 2022 |
Russo ET, Barone F, Bateman A, Cozzini S, Punta M, Laio A. DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets. Plos Computational Biology. 18: e1010610. PMID 36260616 DOI: 10.1371/journal.pcbi.1010610 |
0.364 |
|
| 2022 |
de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, et al. A roadmap for the functional annotation of protein families: a community perspective. Database : the Journal of Biological Databases and Curation. 2022. PMID 35961013 DOI: 10.1093/database/baac062 |
0.36 |
|
| 2022 |
Monzon V, Bateman A. Large-Scale Discovery of Microbial Fibrillar Adhesins and Identification of Novel Members of Adhesive Domain Families. Journal of Bacteriology. 204: e0010722. PMID 35608365 DOI: 10.1128/jb.00107-22 |
0.352 |
|
| 2022 |
Bileschi ML, Belanger D, Bryant DH, Sanderson T, Carter B, Sculley D, Bateman A, DePristo MA, Colwell LJ. Using deep learning to annotate the protein universe. Nature Biotechnology. PMID 35190689 DOI: 10.1038/s41587-021-01179-w |
0.328 |
|
| 2020 |
Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Research. PMID 33211869 DOI: 10.1093/nar/gkaa1047 |
0.646 |
|
| 2020 |
Blum M, Chang HY, Chuguransky S, Grego T, Kandasaamy S, Mitchell A, Nuka G, Paysan-Lafosse T, Qureshi M, Raj S, Richardson L, Salazar GA, Williams L, Bork P, Bridge A, ... ... Bateman A, et al. The InterPro protein families and domains database: 20 years on. Nucleic Acids Research. PMID 33156333 DOI: 10.1093/nar/gkaa977 |
0.712 |
|
| 2020 |
Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar GA, Sonnhammer ELL, Tosatto SCE, Paladin L, Raj S, Richardson LJ, Finn RD, Bateman A. Pfam: The protein families database in 2021. Nucleic Acids Research. PMID 33125078 DOI: 10.1093/nar/gkaa913 |
0.372 |
|
| 2020 |
Rawlings ND, Bateman A. How to use the MEROPS database and website to help understand peptidase specificity. Protein Science : a Publication of the Protein Society. PMID 32920969 DOI: 10.1002/Pro.3948 |
0.457 |
|
| 2020 |
Sweeney BA, Tagmazian AA, Ribas CE, Finn RD, Bateman A, Petrov AI. Exploring Non-Coding RNAs in RNAcentral. Current Protocols in Bioinformatics. 71: e104. PMID 32846052 DOI: 10.1002/Cpbi.104 |
0.391 |
|
| 2020 |
Pearson CR, Tindall SN, Herman R, Jenkins HT, Bateman A, Thomas GH, Potts JR, Van der Woude MW. Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase. Mbio. 11. PMID 32843546 DOI: 10.1128/Mbio.01364-20 |
0.419 |
|
| 2020 |
Xu ER, Lafita A, Bateman A, Hyvönen M. The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers. Acta Crystallographica. Section D, Structural Biology. 76: 124-134. PMID 32038043 DOI: 10.1107/S2059798319016747 |
0.435 |
|
| 2020 |
Lafita A, Bateman A. Modelling structural rearrangements in proteins using Euclidean distance matrices F1000research. 9: 728. DOI: 10.12688/F1000Research.25235.1 |
0.395 |
|
| 2019 |
Bortnov V, Tonelli M, Lee W, Lin Z, Annis DS, Demerdash ON, Bateman A, Mitchell JC, Ge Y, Markley JL, Mosher DF. Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum. Nature Communications. 10: 5612. PMID 31819058 DOI: 10.1038/S41467-019-13577-5 |
0.376 |
|
| 2019 |
Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR. Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection. Proceedings of the National Academy of Sciences of the United States of America. PMID 31818940 DOI: 10.1073/Pnas.1911776116 |
0.363 |
|
| 2019 |
Tørresen OK, Star B, Mier P, Andrade-Navarro MA, Bateman A, Jarnot P, Gruca A, Grynberg M, Kajava AV, Promponas VJ, Anisimova M, Jakobsen KS, Linke D. Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases. Nucleic Acids Research. PMID 31584084 DOI: 10.1093/Nar/Gkz841 |
0.442 |
|
| 2019 |
Rawlings ND, Bateman A. Origins of peptidases. Biochimie. PMID 31377195 DOI: 10.1016/J.Biochi.2019.07.026 |
0.376 |
|
| 2019 |
Lafita A, Tian P, Best RB, Bateman A. Tandem domain swapping: determinants of multidomain protein misfolding. Current Opinion in Structural Biology. 58: 97-104. PMID 31260947 DOI: 10.1016/J.Sbi.2019.05.012 |
0.398 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay SJE, Cochrane G, et al. Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] Nucleic Acids Research. 47. PMID 30535383 DOI: 10.1093/Nar/Gky1206 |
0.585 |
|
| 2019 |
Trendel J, Schwarzl T, Horos R, Prakash A, Bateman A, Hentze MW, Krijgsveld J. The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest. Cell. 176: 391-403.e19. PMID 30528433 DOI: 10.1016/J.Cell.2018.11.004 |
0.35 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034 |
0.687 |
|
| 2018 |
Jeffryes M, Bateman A. Rapid identification of novel protein families using similarity searches. F1000research. 7. PMID 30984369 DOI: 10.12688/F1000Research.17315.1 |
0.438 |
|
| 2018 |
Lafita A, Tian P, Best RB, Bateman A. TADOSS: computational estimation of tandem domain swap stability. Bioinformatics (Oxford, England). PMID 30500878 DOI: 10.1093/Bioinformatics/Bty974 |
0.359 |
|
| 2018 |
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, et al. The Pfam protein families database in 2019. Nucleic Acids Research. PMID 30357350 DOI: 10.1093/Nar/Gky995 |
0.488 |
|
| 2018 |
Kalvari I, Nawrocki EP, Argasinska J, Quinones-Olvera N, Finn RD, Bateman A, Petrov AI. Non-Coding RNA Analysis Using the Rfam Database. Current Protocols in Bioinformatics. e51. PMID 29927072 DOI: 10.1002/Cpbi.51 |
0.464 |
|
| 2018 |
Höps W, Jeffryes M, Bateman A. Gene Unprediction with Spurio: A tool to identify spurious protein sequences. F1000research. 7: 261. PMID 29721311 DOI: 10.12688/F1000Research.14050.1 |
0.478 |
|
| 2017 |
Prakash A, Jeffryes M, Bateman A, Finn RD. The HMMER Web Server for Protein Sequence Similarity Search. Current Protocols in Bioinformatics. 60: 3.15.1-3.15.23. PMID 29220076 DOI: 10.1002/Cpbi.40 |
0.457 |
|
| 2017 |
Rawlings ND, Barrett AJ, Thomas PD, Huang X, Bateman A, Finn RD. The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. Nucleic Acids Research. PMID 29145643 DOI: 10.1093/Nar/Gkx1134 |
0.51 |
|
| 2017 |
Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Research. PMID 29112718 DOI: 10.1093/Nar/Gkx1038 |
0.46 |
|
| 2017 |
Panni S, Prakash A, Bateman A, Orchard S. Yeast non-coding RNA interaction network. Rna (New York, N.Y.). PMID 28701522 DOI: 10.1261/Rna.060996.117 |
0.348 |
|
| 2017 |
Gonzalez G, Hardwick S, Maslen SL, Skehel JM, Holmqvist E, Vogel J, Bateman A, Luisi B, Broadhurst RW. Structure of the Escherichia coli ProQ RNA chaperone protein. Rna (New York, N.Y.). PMID 28193673 DOI: 10.1261/Rna.060343.116 |
0.425 |
|
| 2017 |
Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008 |
0.679 |
|
| 2017 |
El-Gebali S, Mistry J, Richardson L, Mitchell A, Bateman A, Finn R. Pfam families and clans: maximizing biocuration effort F1000research. 6. DOI: 10.7490/F1000Research.1113797.1 |
0.344 |
|
| 2016 |
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Research. PMID 27899635 DOI: 10.1093/Nar/Gkw1107 |
0.73 |
|
| 2016 |
Doğan T, MacDougall A, Saidi R, Bateman A, O'Donovan C, Martin MJ. UniProt-DAAC: Domain Architecture Alignment and Classification, a New Method for Automatic Functional Annotation in UniProtKB. Bioinformatics (Oxford, England). PMID 27153729 DOI: 10.1093/Bioinformatics/Btw114 |
0.419 |
|
| 2016 |
Bousfield D, McEntyre J, Velankar S, Papadatos G, Bateman A, Cochrane G, Kim JH, Graef F, Vartak V, Alako B, Blomberg N. Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. F1000research. 5. PMID 27092246 DOI: 10.12688/F1000Research.7911.1 |
0.321 |
|
| 2015 |
Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research. PMID 26673716 DOI: 10.1093/Nar/Gkv1344 |
0.49 |
|
| 2015 |
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, et al. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database : the Journal of Biological Databases and Curation. 2015: bav063. PMID 26284514 DOI: 10.1093/Database/Bav063 |
0.372 |
|
| 2015 |
Palfree RG, Bennett HP, Bateman A. The Evolution of the Secreted Regulatory Protein Progranulin. Plos One. 10: e0133749. PMID 26248158 DOI: 10.1371/journal.pone.0133749 |
0.308 |
|
| 2015 |
Baxevanis AD, Bateman A. The Importance of Biological Databases in Biological Discovery. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 50: 1.1.1-8. PMID 26094768 DOI: 10.1002/0471250953.bi0101s50 |
0.311 |
|
| 2015 |
Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR. HMMER web server: 2015 update. Nucleic Acids Research. 43: W30-8. PMID 25943547 DOI: 10.1093/Nar/Gkv397 |
0.479 |
|
| 2015 |
Prakash A, Bateman A. Domain atrophy creates rare cases of functional partial protein domains. Genome Biology. 16: 88. PMID 25924720 DOI: 10.1186/S13059-015-0655-8 |
0.419 |
|
| 2015 |
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, ... ... Bateman A, et al. Key challenges for the creation and maintenance of specialist protein resources. Proteins. 83: 1005-13. PMID 25820941 DOI: 10.1002/Prot.24803 |
0.442 |
|
| 2015 |
Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, et al. The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Research. 43: D213-21. PMID 25428371 DOI: 10.1093/Nar/Gku1243 |
0.727 |
|
| 2015 |
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Rfam 12.0: updates to the RNA families database. Nucleic Acids Research. 43: D130-7. PMID 25392425 DOI: 10.1093/Nar/Gku1063 |
0.48 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/Nar/Gku991 |
0.675 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093l/narlgku991 |
0.619 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093/nar/gku991 |
0.619 |
|
| 2014 |
Rawlings ND, Barrett AJ, Bateman A. Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 1.25.1-1.25.33. PMID 25501939 DOI: 10.1002/0471250953.Bi0125S48 |
0.397 |
|
| 2014 |
Das D, Murzin AG, Rawlings ND, Finn RD, Coggill P, Bateman A, Godzik A, Aravind L. Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis. Bmc Bioinformatics. 15: 75. PMID 24646163 DOI: 10.1186/1471-2105-15-75 |
0.437 |
|
| 2014 |
Finn RD, Miller BL, Clements J, Bateman A. iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Research. 42: D364-73. PMID 24297255 DOI: 10.1093/Nar/Gkt1210 |
0.429 |
|
| 2014 |
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Pfam: the protein families database. Nucleic Acids Research. 42: D222-30. PMID 24288371 DOI: 10.1093/Nar/Gkt1223 |
0.491 |
|
| 2014 |
Apweiler R, Bateman A, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, Alpi E, Antunes R, Arganiska J, Casanova EB, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, et al. Activities at the Universal Protein Resource (UniProt) Nucleic Acids Research. 42: D191-D198. PMID 24253303 DOI: 10.1093/Nar/Gkt1140 |
0.416 |
|
| 2014 |
Schreiber F, Patricio M, Muffato M, Pignatelli M, Bateman A. TreeFam v9: a new website, more species and orthology-on-the-fly. Nucleic Acids Research. 42: D922-5. PMID 24194607 DOI: 10.1093/Nar/Gkt1055 |
0.415 |
|
| 2014 |
Rawlings ND, Waller M, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research. 42: D503-9. PMID 24157837 DOI: 10.1093/nar/gkt953 |
0.343 |
|
| 2014 |
Dogan T, Bateman A, Martin M. UniProt domain architecture alignment: a new approach for protein similarity search using InterPro domain annotation F1000research. 5. DOI: 10.7490/F1000Research.1096836.1 |
0.425 |
|
| 2013 |
Gaudet P, Munoz-Torres M, Robinson-Rechavi M, Attwood T, Bateman A, Cherry JM, Kania R, O'Donovan C, Yamasaki C. DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. Database : the Journal of Biological Databases and Curation. 2013: bat077. PMID 24319113 DOI: 10.1093/Database/Bat077 |
0.361 |
|
| 2013 |
Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A. LUD, a new protein domain associated with lactate utilization. Bmc Bioinformatics. 14: 341. PMID 24274019 DOI: 10.1186/1471-2105-14-341 |
0.468 |
|
| 2013 |
Eberhardt RY, Chang Y, Bateman A, Murzin AG, Axelrod HL, Hwang WC, Aravind L. Filling out the structural map of the NTF2-like superfamily. Bmc Bioinformatics. 14: 327. PMID 24246060 DOI: 10.1186/1471-2105-14-327 |
0.425 |
|
| 2013 |
Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, ... ... Bateman A, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/Journal.Pbio.1001638 |
0.514 |
|
| 2013 |
Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L, Murzin AG, Bateman A. Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. Bmc Bioinformatics. 14: 265. PMID 24004689 DOI: 10.1186/1471-2105-14-265 |
0.508 |
|
| 2013 |
Buljan M, Chalancon G, Dunker AK, Bateman A, Balaji S, Fuxreiter M, Babu MM. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Current Opinion in Structural Biology. 23: 443-50. PMID 23706950 DOI: 10.1016/J.Sbi.2013.03.006 |
0.316 |
|
| 2013 |
Mistry J, Coggill P, Eberhardt RY, Deiana A, Giansanti A, Finn RD, Bateman A, Punta M. The challenge of increasing Pfam coverage of the human proteome. Database : the Journal of Biological Databases and Curation. 2013: bat023. PMID 23603847 DOI: 10.1093/Database/Bat023 |
0.462 |
|
| 2013 |
Mistry J, Finn RD, Eddy SR, Bateman A, Punta M. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Research. 41: e121. PMID 23598997 DOI: 10.1093/Nar/Gkt263 |
0.487 |
|
| 2013 |
Barquist L, Langridge GC, Turner DJ, Phan MD, Turner AK, Bateman A, Parkhill J, Wain J, Gardner PP. A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Research. 41: 4549-64. PMID 23470992 DOI: 10.1093/Nar/Gkt148 |
0.399 |
|
| 2013 |
Eberhardt RY, Bartholdson SJ, Punta M, Bateman A. The SHOCT domain: a widespread domain under-represented in model organisms. Plos One. 8: e57848. PMID 23451277 DOI: 10.1371/Journal.Pone.0057848 |
0.37 |
|
| 2013 |
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, ... ... Bateman A, et al. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology. 14: R11. PMID 23375108 DOI: 10.1186/Gb-2013-14-2-R11 |
0.33 |
|
| 2013 |
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Rfam 11.0: 10 years of RNA families. Nucleic Acids Research. 41: D226-32. PMID 23125362 DOI: 10.1093/Nar/Gks1005 |
0.442 |
|
| 2012 |
Buljan M, Chalancon G, Eustermann S, Wagner GP, Fuxreiter M, Bateman A, Babu MM. Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks. Molecular Cell. 46: 871-83. PMID 22749400 DOI: 10.1016/J.Molcel.2012.05.039 |
0.316 |
|
| 2012 |
Coggill P, Bateman A. The YARHG domain: an extracellular domain in search of a function. Plos One. 7: e35575. PMID 22615736 DOI: 10.1371/Journal.Pone.0035575 |
0.404 |
|
| 2012 |
Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A. AntiFam: a tool to help identify spurious ORFs in protein annotation. Database : the Journal of Biological Databases and Curation. 2012: bas003. PMID 22434837 DOI: 10.1093/Database/Bas003 |
0.524 |
|
| 2012 |
Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, O'Donovan C, Xenarios L, Gaudet P. Biocurators and biocuration: surveying the 21st century challenges. Database : the Journal of Biological Databases and Curation. 2012: bar059. PMID 22434828 DOI: 10.1093/Database/Bar059 |
0.307 |
|
| 2012 |
Peng H, Bateman A, Valencia A, Wren JD. Bioimage informatics: a new category in Bioinformatics. Bioinformatics (Oxford, England). 28: 1057. PMID 22399678 DOI: 10.1093/Bioinformatics/Bts111 |
0.301 |
|
| 2012 |
Finn RD, Gardner PP, Bateman A. Making your database available through Wikipedia: the pros and cons. Nucleic Acids Research. 40: D9-12. PMID 22144683 DOI: 10.1093/Nar/Gkr1195 |
0.334 |
|
| 2012 |
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, et al. The Pfam protein families database. Nucleic Acids Research. 40: D290-301. PMID 22127870 DOI: 10.1093/Nar/Gkr1065 |
0.439 |
|
| 2012 |
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research. 40: D306-12. PMID 22096229 DOI: 10.1093/Nar/Gkr948 |
0.733 |
|
| 2012 |
Rawlings ND, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research. 40: D343-50. PMID 22086950 DOI: 10.1093/Nar/Gkr987 |
0.388 |
|
| 2011 |
Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/Rna.2750811 |
0.638 |
|
| 2011 |
Rawlings ND, Barrett AJ, Bateman A. Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes. The Journal of Biological Chemistry. 286: 38321-8. PMID 21832066 DOI: 10.1074/Jbc.M111.260026 |
0.359 |
|
| 2011 |
Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z. RNIE: genome-wide prediction of bacterial intrinsic terminators. Nucleic Acids Research. 39: 5845-52. PMID 21478170 DOI: 10.1093/Nar/Gkr168 |
0.393 |
|
| 2011 |
Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Database : the Journal of Biological Databases and Curation. 2011: baq027. PMID 21205783 DOI: 10.1093/Database/Baq027 |
0.348 |
|
| 2011 |
Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research. 39: D7-10. PMID 21097465 DOI: 10.1093/Nar/Gkq1173 |
0.348 |
|
| 2011 |
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/Nar/Gkq1129 |
0.662 |
|
| 2010 |
Bakolitsa C, Bateman A, Jin KK, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chiu HJ, Clayton T, Das D, et al. The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1198-204. PMID 20944211 DOI: 10.1107/S1744309109025196 |
0.419 |
|
| 2010 |
Bateman A, Coggill P, Finn RD. DUFs: families in search of function. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1148-52. PMID 20944204 DOI: 10.1107/S1744309110001685 |
0.438 |
|
| 2010 |
Logan DW, Sandal M, Gardner PP, Manske M, Bateman A. Ten simple rules for editing Wikipedia. Plos Computational Biology. 6. PMID 20941386 DOI: 10.1371/Journal.Pcbi.1000941 |
0.332 |
|
| 2010 |
Buljan M, Frankish A, Bateman A. Quantifying the mechanisms of domain gain in animal proteins. Genome Biology. 11: R74. PMID 20633280 DOI: 10.1186/Gb-2010-11-7-R74 |
0.403 |
|
| 2010 |
Gardner PP, Bateman A, Poole AM. SnoPatrol: how many snoRNA genes are there? Journal of Biology. 9: 4. PMID 20122292 DOI: 10.1186/Jbiol211 |
0.309 |
|
| 2010 |
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. The Pfam protein families database. Nucleic Acids Research. 38: D211-22. PMID 19920124 DOI: 10.1093/nar/gkp985 |
0.347 |
|
| 2010 |
Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, et al. Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. Journal of Molecular Biology. 396: 31-46. PMID 19913036 DOI: 10.1016/J.Jmb.2009.11.006 |
0.405 |
|
| 2010 |
Rawlings ND, Barrett AJ, Bateman A. MEROPS: the peptidase database. Nucleic Acids Research. 38: D227-33. PMID 19892822 DOI: 10.1093/Nar/Gkp971 |
0.321 |
|
| 2009 |
Chang C, Coggill P, Bateman A, Finn RD, Cymborowski M, Otwinowski Z, Minor W, Volkart L, Joachimiak A. The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes. Bmc Structural Biology. 9: 75. PMID 20017931 DOI: 10.1186/1472-6807-9-75 |
0.34 |
|
| 2009 |
Rawlings ND, Bateman A. Pepsin homologues in bacteria. Bmc Genomics. 10: 437. PMID 19758436 DOI: 10.1186/1471-2164-10-437 |
0.371 |
|
| 2009 |
Buljan M, Bateman A. The evolution of protein domain families. Biochemical Society Transactions. 37: 751-5. PMID 19614588 DOI: 10.1042/Bst0370751 |
0.494 |
|
| 2009 |
Bateman A, Quackenbush J. Bioinformatics for next generation sequencing. Bioinformatics (Oxford, England). 25: 429. PMID 19202193 DOI: 10.1093/Bioinformatics/Btp037 |
0.367 |
|
| 2009 |
Bateman A, Finn RD, Sims PJ, Wiedmer T, Biegert A, Söding J. Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics (Oxford, England). 25: 159-62. PMID 19010806 DOI: 10.1093/Bioinformatics/Btn595 |
0.405 |
|
| 2009 |
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/Nar/Gkn766 |
0.69 |
|
| 2009 |
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, et al. InterPro: the integrative protein signature database. Nucleic Acids Research. 37: D211-5. PMID 18940856 DOI: 10.1093/Nar/Gkn785 |
0.689 |
|
| 2009 |
Mistry J, Cogghill P, Eddy S, Finn R, Tate J, Bateman A. Broadening Pfam Protein Sequence Annotations Nature Precedings. DOI: 10.1038/Npre.2009.3194.1 |
0.444 |
|
| 2008 |
Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. The RNA WikiProject: community annotation of RNA families. Rna (New York, N.Y.). 14: 2462-4. PMID 18945806 DOI: 10.1261/Rna.1200508 |
0.626 |
|
| 2008 |
Wren JD, Bateman A. Databases, data tombs and dust in the wind. Bioinformatics (Oxford, England). 24: 2127-8. PMID 18819940 DOI: 10.1093/Bioinformatics/Btn464 |
0.343 |
|
| 2008 |
Coggill P, Finn RD, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18819075 DOI: 10.1002/0471250953.bi0205s23 |
0.439 |
|
| 2008 |
Sammut SJ, Finn RD, Bateman A. Pfam 10 years on: 10,000 families and still growing. Briefings in Bioinformatics. 9: 210-9. PMID 18344544 DOI: 10.1093/Bib/Bbn010 |
0.544 |
|
| 2008 |
Schuster-Böckler B, Bateman A. Protein interactions in human genetic diseases. Genome Biology. 9: R9. PMID 18199329 DOI: 10.1186/Gb-2008-9-1-R9 |
0.33 |
|
| 2008 |
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A. The Pfam protein families database. Nucleic Acids Research. 36: D281-8. PMID 18039703 DOI: 10.1093/nar/gkm960 |
0.45 |
|
| 2007 |
Mistry J, Bateman A, Finn RD. Predicting active site residue annotations in the Pfam database. Bmc Bioinformatics. 8: 298. PMID 17688688 DOI: 10.1186/1471-2105-8-298 |
0.37 |
|
| 2007 |
Schuster-Böckler B, Bateman A. Reuse of structural domain-domain interactions in protein networks. Bmc Bioinformatics. 8: 259. PMID 17640363 DOI: 10.1186/1471-2105-8-259 |
0.399 |
|
| 2007 |
Vanholme B, Grunewald W, Bateman A, Kohchi T, Gheysen G. The tify family previously known as ZIM. Trends in Plant Science. 12: 239-44. PMID 17499004 DOI: 10.1016/J.Tplants.2007.04.004 |
0.487 |
|
| 2007 |
Bateman A, Finn RD. SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics (Oxford, England). 23: 809-14. PMID 17277330 DOI: 10.1093/Bioinformatics/Btm034 |
0.503 |
|
| 2007 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, et al. New developments in the InterPro database. Nucleic Acids Research. 35: D224-8. PMID 17202162 DOI: 10.1093/Nar/Gkl841 |
0.699 |
|
| 2006 |
Seitan VC, Banks P, Laval S, Majid NA, Dorsett D, Rana A, Smith J, Bateman A, Krpic S, Hostert A, Rollins RA, Erdjument-Bromage H, Tempst P, Benard CY, Hekimi S, et al. Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance. Plos Biology. 4: e242. PMID 16802858 DOI: 10.1371/Journal.Pbio.0040242 |
0.356 |
|
| 2006 |
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149 |
0.657 |
|
| 2006 |
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research. 34: D140-4. PMID 16381832 DOI: 10.1093/Nar/Gkj112 |
0.621 |
|
| 2006 |
Bateman A. Bioinformatics - The new home for protein sequence motifs Bioinformatics. 22: 2. DOI: 10.1093/Bioinformatics/Bti755 |
0.45 |
|
| 2005 |
Schuster-Böckler B, Bateman A. Visualizing profile-profile alignment: pairwise HMM logos. Bioinformatics (Oxford, England). 21: 2912-3. PMID 15827079 DOI: 10.1093/Bioinformatics/Bti434 |
0.367 |
|
| 2005 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/Nar/Gki106 |
0.707 |
|
| 2005 |
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/Nar/Gki081 |
0.701 |
|
| 2005 |
Bateman A, Holden MT, Yeats C. The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. Bioinformatics (Oxford, England). 21: 1301-3. PMID 15598841 DOI: 10.1093/Bioinformatics/Bti206 |
0.341 |
|
| 2005 |
Finn RD, Marshall M, Bateman A. iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics (Oxford, England). 21: 410-2. PMID 15353450 DOI: 10.1093/Bioinformatics/Bti011 |
0.439 |
|
| 2004 |
Dillon SC, Bateman A. The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. Bmc Bioinformatics. 5: 109. PMID 15307895 DOI: 10.1186/1471-2105-5-109 |
0.303 |
|
| 2004 |
Studholme DJ, Fuerst JA, Bateman A. Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica. Fems Microbiology Letters. 236: 333-40. PMID 15251216 DOI: 10.1016/J.Femsle.2004.06.007 |
0.486 |
|
| 2004 |
Coin L, Bateman A, Durbin R. Enhanced protein domain discovery using taxonomy. Bmc Bioinformatics. 5: 56. PMID 15137915 DOI: 10.1186/1471-2105-5-56 |
0.435 |
|
| 2004 |
Yeats C, Rawlings ND, Bateman A. The PepSY domain: a regulator of peptidase activity in the microbial environment? Trends in Biochemical Sciences. 29: 169-72. PMID 15124630 DOI: 10.1016/J.Tibs.2004.02.004 |
0.381 |
|
| 2004 |
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121 |
0.692 |
|
| 2003 |
Finn R, Griffiths-Jones S, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18428696 DOI: 10.1002/0471250953.Bi0205S01 |
0.721 |
|
| 2003 |
Yeats C, Bateman A. The BON domain: a putative membrane-binding domain. Trends in Biochemical Sciences. 28: 352-5. PMID 12878000 DOI: 10.1016/S0968-0004(03)00115-4 |
0.442 |
|
| 2003 |
Bateman A, Rawlings ND. The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. Trends in Biochemical Sciences. 28: 234-7. PMID 12765834 DOI: 10.1016/S0968-0004(03)00061-6 |
0.401 |
|
| 2003 |
Studholme DJ, Rawlings ND, Barrett AJ, Bateman A. A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised. Bmc Bioinformatics. 4: 17. PMID 12740029 DOI: 10.1186/1471-2105-4-17 |
0.451 |
|
| 2003 |
Coin L, Bateman A, Durbin R. Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proceedings of the National Academy of Sciences of the United States of America. 100: 4516-20. PMID 12668763 DOI: 10.1073/Pnas.0737502100 |
0.401 |
|
| 2003 |
Yeats C, Bentley S, Bateman A. New knowledge from old: in silico discovery of novel protein domains in Streptomyces coelicolor. Bmc Microbiology. 3: 3. PMID 12625841 DOI: 10.1186/1471-2180-3-3 |
0.503 |
|
| 2003 |
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/Nar/Gkg006 |
0.699 |
|
| 2003 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046 |
0.719 |
|
| 2002 |
Howe K, Bateman A, Durbin R. QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics (Oxford, England). 18: 1546-7. PMID 12424131 DOI: 10.1093/Bioinformatics/18.11.1546 |
0.436 |
|
| 2002 |
Bateman A, Haft DH. HMM-based databases in InterPro. Briefings in Bioinformatics. 3: 236-45. PMID 12230032 DOI: 10.1093/Bib/3.3.236 |
0.462 |
|
| 2002 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031 DOI: 10.1093/Bib/3.3.225 |
0.558 |
|
| 2002 |
Griffiths-Jones S, Bateman A. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics (Oxford, England). 18: 1243-9. PMID 12217916 DOI: 10.1093/Bioinformatics/18.9.1243 |
0.674 |
|
| 2002 |
Yeats C, Finn RD, Bateman A. The PASTA domain: a beta-lactam-binding domain. Trends in Biochemical Sciences. 27: 438. PMID 12217513 DOI: 10.1016/S0968-0004(02)02164-3 |
0.33 |
|
| 2002 |
Bateman A. The SGS3 protein involved in PTGS finds a family. Bmc Bioinformatics. 3: 21. PMID 12162795 DOI: 10.1186/1471-2105-3-21 |
0.471 |
|
| 2002 |
Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature. 417: 141-7. PMID 12000953 DOI: 10.1038/417141A |
0.326 |
|
| 2002 |
De Camilli P, Chen H, Hyman J, Panepucci E, Bateman A, Brunger AT. The ENTH domain. Febs Letters. 513: 11-8. PMID 11911874 DOI: 10.1016/S0014-5793(01)03306-3 |
0.409 |
|
| 2002 |
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314 |
0.725 |
|
| 2001 |
Murzin AG, Bateman A. CASP2 knowledge‐based approach to distant homology recognition and fold prediction in CASP4 Proteins. 45: 76-85. PMID 11835484 DOI: 10.1002/Prot.10037 |
0.393 |
|
| 2001 |
de Bakker PI, Bateman A, Burke DF, Miguel RN, Mizuguchi K, Shi J, Shirai H, Blundell TL. HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinformatics (Oxford, England). 17: 748-9. PMID 11524380 DOI: 10.1093/Bioinformatics/17.8.748 |
0.442 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Bateman A, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062 |
0.366 |
|
| 2001 |
Birney E, Bateman A, Clamp ME, Hubbard TJ. Mining the draft human genome Nature. 409: 827-828. PMID 11236999 DOI: 10.1038/35057004 |
0.336 |
|
| 2001 |
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research. 29: 37-40. PMID 11125043 DOI: 10.1093/Nar/29.1.37 |
0.544 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Bateman A, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627 |
0.35 |
|
| 2000 |
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (Oxford, England). 16: 1145-50. PMID 11159333 DOI: 10.1093/Bioinformatics/16.12.1145 |
0.496 |
|
| 2000 |
Mahon P, Bateman A. The PA domain: a protease-associated domain. Protein Science. 9: 1930-1934. PMID 11106166 DOI: 10.1110/Ps.9.10.1930 |
0.403 |
|
| 2000 |
Cerutti L, Mian N, Bateman A. Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain. Trends in Biochemical Sciences. 25: 481-2. PMID 11050429 DOI: 10.1016/S0968-0004(00)01641-8 |
0.365 |
|
| 2000 |
Bateman A, Bycroft M. The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD). Journal of Molecular Biology. 299: 1113-9. PMID 10843862 DOI: 10.1006/Jmbi.2000.3778 |
0.396 |
|
| 2000 |
Bateman A, Birney E. Searching databases to find protein domain organization. Advances in Protein Chemistry. 54: 137-157. PMID 10829227 DOI: 10.1016/S0065-3233(00)54005-4 |
0.414 |
|
| 1999 |
Bateman A, Sandford R. The PLAT domain: a new piece in the PKD1 puzzle. Current Biology : Cb. 9: R588-90. PMID 10469604 DOI: 10.1016/S0960-9822(99)80380-7 |
0.331 |
|
| 1999 |
Bateman A. The SIS domain: a phosphosugar-binding domain. Trends in Biochemical Sciences. 24: 94-5. PMID 10203754 DOI: 10.1016/S0968-0004(99)01357-2 |
0.305 |
|
| 1999 |
Bycroft M, Bateman A, Clarke J, Hamill SJ, Sandford R, Thomas RL, Chothia C. The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease. The Embo Journal. 18: 297-305. PMID 9889186 DOI: 10.1093/Emboj/18.2.297 |
0.642 |
|
| 1999 |
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer ELL. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins Nucleic Acids Research. 27: 260-262. PMID 9847196 DOI: 10.1093/Nar/27.1.260 |
0.479 |
|
| 1998 |
Bateman A, Murzin AG, Teichmann SA. Structure and distribution of pentapeptide repeats in bacteria Protein Science. 7: 1477-1480. PMID 9655353 DOI: 10.1002/Pro.5560070625 |
0.585 |
|
| 1998 |
Sundaresan V, Roberts I, Bateman A, Bankier A, Sheppard M, Hobbs C, Xiong J, Minna J, Latif F, Lerman M, Rabbitts P. The DUTT1 gene, a novel NCAM family member is expressed in developing murine neural tissues and has an unusually broad pattern of expression. Molecular and Cellular Neurosciences. 11: 29-35. PMID 9608531 DOI: 10.1006/Mcne.1998.0672 |
0.426 |
|
| 1998 |
Sonnhammer ELL, Eddy SR, Birney E, Bateman A, Durbin R. Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic Acids Research. 26: 320-322. PMID 9399864 DOI: 10.1093/Nar/26.1.320 |
0.552 |
|
| 1997 |
Sandford R, Sgotto B, Aparicio S, Brenner S, Vaudin M, Wilson RK, Chissoe S, Pepin K, Bateman A, Chothia C, Hughes J, Harris P. Comparative analysis of the polycystic kidney disease 1 (PKD1) gene reveals an integral membrane glycoprotein with multiple evolutionary conserved domains Human Molecular Genetics. 6: 1483-1489. PMID 9285785 DOI: 10.1093/Hmg/6.9.1483 |
0.667 |
|
| 1997 |
Bateman A, Eddy SR, Mesyanzhinov VV. A member of the immunoglobulin superfamily in bacteriophage T4 Virus Genes. 14: 163-165. PMID 9237357 DOI: 10.1023/A:1007977503658 |
0.438 |
|
| 1997 |
Bateman A. The structure of a domain common to archaebacteria and the homocystinuria disease protein. Trends in Biochemical Sciences. 22: 12-13. PMID 9020585 DOI: 10.1016/S0968-0004(96)30046-7 |
0.383 |
|
| 1997 |
Murzin AG, Bateman A. Distant homology recognition using structural classification of proteins Proteins. 29: 105-112. DOI: 10.1002/(Sici)1097-0134(1997)1+<105::Aid-Prot14>3.0.Co;2-S |
0.419 |
|
| 1996 |
Bateman A, Chothia C. Fibronectin type III domains in yeast detected by a hidden Markov model [2] Current Biology. 6: 1544-1547. PMID 8994808 DOI: 10.1016/S0960-9822(02)70765-3 |
0.666 |
|
| 1996 |
Bateman A, Eddy SR, Chothia C. Members of the immunoglobulin superfamily in bacteria Protein Science. 5: 1939-1941. PMID 8880921 DOI: 10.1002/Pro.5560050923 |
0.673 |
|
| 1996 |
Bateman A, Jouet M, MacFarlane J, Du JS, Kenwrick S, Chothia C. Outline Structure Of The Human L1 Cell Adhesion Molecule And The Sites Where Mutations Cause Neurological Disorders The Embo Journal. 15: 6050-6059. DOI: 10.1002/J.1460-2075.1996.Tb00993.X |
0.593 |
|
| 1995 |
Bateman A, Chothia C. Outline structures for the extracellular domains of the fibroblast growth factor receptors Nature Structural Biology. 2: 1068-1074. PMID 8846218 DOI: 10.1038/Nsb1295-1068 |
0.593 |
|
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