Alex Bateman - Publications

Affiliations: 
 
Website:
http://www.sanger.ac.uk/research/faculty/abateman/

319 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tunyasuvunakool K, Adler J, Wu Z, Green T, Zielinski M, Žídek A, Bridgland A, Cowie A, Meyer C, Laydon A, Velankar S, Kleywegt GJ, Bateman A, Evans R, Pritzel A, et al. Highly accurate protein structure prediction for the human proteome. Nature. PMID 34293799 DOI: 10.1038/s41586-021-03828-1  1
2021 Monzon V, Lafita A, Bateman A. Discovery of fibrillar adhesins across bacterial species. Bmc Genomics. 22: 550. PMID 34275445 DOI: 10.1186/s12864-021-07586-2  1
2021 Whelan F, Lafita A, Gilburt J, Dégut C, Griffiths SC, Jenkins HT, St John AN, Paci E, Moir JWB, Plevin MJ, Baumann CG, Bateman A, Potts JR. Periscope Proteins are variable-length regulators of bacterial cell surface interactions. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34074781 DOI: 10.1073/pnas.2101349118  1
2021 Smyshlyaev G, Bateman A, Barabas O. Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes. Molecular Systems Biology. 17: e9880. PMID 34018328 DOI: 10.15252/msb.20209880  0.01
2021 Girbig M, Misiaszek AD, Vorländer MK, Lafita A, Grötsch H, Baudin F, Bateman A, Müller CW. Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nature Structural & Molecular Biology. 28: 210-219. PMID 33558764 DOI: 10.1038/s41594-020-00555-5  1
2020 Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Research. PMID 33211869 DOI: 10.1093/nar/gkaa1047  1
2020 Blum M, Chang HY, Chuguransky S, Grego T, Kandasaamy S, Mitchell A, Nuka G, Paysan-Lafosse T, Qureshi M, Raj S, Richardson L, Salazar GA, Williams L, Bork P, Bridge A, ... ... Bateman A, et al. The InterPro protein families and domains database: 20 years on. Nucleic Acids Research. PMID 33156333 DOI: 10.1093/nar/gkaa977  1
2020 Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, et al. Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings in Bioinformatics. PMID 33147627 DOI: 10.1093/bib/bbaa232  1
2020 Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar GA, Sonnhammer ELL, Tosatto SCE, Paladin L, Raj S, Richardson LJ, Finn RD, Bateman A. Pfam: The protein families database in 2021. Nucleic Acids Research. PMID 33125078 DOI: 10.1093/nar/gkaa913  1
2020 Rawlings ND, Bateman A. How to use the MEROPS database and website to help understand peptidase specificity. Protein Science : a Publication of the Protein Society. PMID 32920969 DOI: 10.1002/Pro.3948  1
2020 Sweeney BA, Tagmazian AA, Ribas CE, Finn RD, Bateman A, Petrov AI. Exploring Non-Coding RNAs in RNAcentral. Current Protocols in Bioinformatics. 71: e104. PMID 32846052 DOI: 10.1002/Cpbi.104  1
2020 Pearson CR, Tindall SN, Herman R, Jenkins HT, Bateman A, Thomas GH, Potts JR, Van der Woude MW. Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase. Mbio. 11. PMID 32843546 DOI: 10.1128/Mbio.01364-20  1
2020 Walton SJ, Wang H, Quintero-Cadena P, Bateman A, Sternberg PW. AF4/FMR2 Family Homolog Regulates Heat Shock Induced Gene Expression. Genetics. PMID 32518061 DOI: 10.1534/Genetics.120.302923  0.01
2020 Xu ER, Lafita A, Bateman A, Hyvönen M. The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers. Acta Crystallographica. Section D, Structural Biology. 76: 124-134. PMID 32038043 DOI: 10.1107/S2059798319016747  1
2020 Lafita A, Bateman A. Modelling structural rearrangements in proteins using Euclidean distance matrices F1000research. 9: 728. DOI: 10.12688/F1000Research.25235.1  1
2019 Bortnov V, Tonelli M, Lee W, Lin Z, Annis DS, Demerdash ON, Bateman A, Mitchell JC, Ge Y, Markley JL, Mosher DF. Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum. Nature Communications. 10: 5612. PMID 31819058 DOI: 10.1038/S41467-019-13577-5  0.01
2019 Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR. Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection. Proceedings of the National Academy of Sciences of the United States of America. PMID 31818940 DOI: 10.1073/Pnas.1911776116  1
2019 Tørresen OK, Star B, Mier P, Andrade-Navarro MA, Bateman A, Jarnot P, Gruca A, Grynberg M, Kajava AV, Promponas VJ, Anisimova M, Jakobsen KS, Linke D. Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases. Nucleic Acids Research. PMID 31584084 DOI: 10.1093/Nar/Gkz841  0.01
2019 Rawlings ND, Bateman A. Origins of peptidases. Biochimie. PMID 31377195 DOI: 10.1016/J.Biochi.2019.07.026  1
2019 Lafita A, Tian P, Best RB, Bateman A. Tandem domain swapping: determinants of multidomain protein misfolding. Current Opinion in Structural Biology. 58: 97-104. PMID 31260947 DOI: 10.1016/J.Sbi.2019.05.012  1
2019 Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay SJE, Cochrane G, et al. Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] Nucleic Acids Research. 47. PMID 30535383 DOI: 10.1093/Nar/Gky1206  1
2019 Trendel J, Schwarzl T, Horos R, Prakash A, Bateman A, Hentze MW, Krijgsveld J. The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest. Cell. 176: 391-403.e19. PMID 30528433 DOI: 10.1016/J.Cell.2018.11.004  1
2019 Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034  1
2018 Jeffryes M, Bateman A. Rapid identification of novel protein families using similarity searches. F1000research. 7. PMID 30984369 DOI: 10.12688/F1000Research.17315.1  1
2018 Lafita A, Tian P, Best RB, Bateman A. TADOSS: computational estimation of tandem domain swap stability. Bioinformatics (Oxford, England). PMID 30500878 DOI: 10.1093/Bioinformatics/Bty974  1
2018 El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, et al. The Pfam protein families database in 2019. Nucleic Acids Research. PMID 30357350 DOI: 10.1093/Nar/Gky995  1
2018 Kalvari I, Nawrocki EP, Argasinska J, Quinones-Olvera N, Finn RD, Bateman A, Petrov AI. Non-Coding RNA Analysis Using the Rfam Database. Current Protocols in Bioinformatics. e51. PMID 29927072 DOI: 10.1002/Cpbi.51  1
2018 Höps W, Jeffryes M, Bateman A. Gene Unprediction with Spurio: A tool to identify spurious protein sequences. F1000research. 7: 261. PMID 29721311 DOI: 10.12688/F1000Research.14050.1  1
2017 Prakash A, Jeffryes M, Bateman A, Finn RD. The HMMER Web Server for Protein Sequence Similarity Search. Current Protocols in Bioinformatics. 60: 3.15.1-3.15.23. PMID 29220076 DOI: 10.1002/Cpbi.40  1
2017 Rawlings ND, Barrett AJ, Thomas PD, Huang X, Bateman A, Finn RD. The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. Nucleic Acids Research. PMID 29145643 DOI: 10.1093/Nar/Gkx1134  1
2017 Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Research. PMID 29112718 DOI: 10.1093/Nar/Gkx1038  1
2017 Poux S, Arighi CN, Magrane M, Bateman A, Wei CH, Lu Z, Boutet E, Bye-A-Jee H, Famiglietti ML, Roechert B. On expert curation and scalability: UniProtKB/Swiss-Prot as a case study. Bioinformatics (Oxford, England). PMID 29036270 DOI: 10.1093/Bioinformatics/Btx439  0.01
2017 Panni S, Prakash A, Bateman A, Orchard S. Yeast non-coding RNA interaction network. Rna (New York, N.Y.). PMID 28701522 DOI: 10.1261/Rna.060996.117  1
2017 Thomas DC, Clare S, Sowerby JM, Pardo M, Juss JK, Goulding DA, van der Weyden L, Storisteanu D, Prakash A, Espéli M, Flint S, Lee JC, Hoenderdos K, Kane L, Harcourt K, ... ... Bateman A, et al. Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity. The Journal of Experimental Medicine. PMID 28351984 DOI: 10.1084/Jem.20161382  1
2017 Gonzalez G, Hardwick S, Maslen SL, Skehel JM, Holmqvist E, Vogel J, Bateman A, Luisi B, Broadhurst RW. Structure of the Escherichia coli ProQ RNA chaperone protein. Rna (New York, N.Y.). PMID 28193673 DOI: 10.1261/Rna.060343.116  0.01
2017 Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008  1
2017 El-Gebali S, Mistry J, Richardson L, Mitchell A, Bateman A, Finn R. Pfam families and clans: maximizing biocuration effort F1000research. 6. DOI: 10.7490/F1000Research.1113797.1  1
2016 Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Research. PMID 27899635 DOI: 10.1093/Nar/Gkw1107  1
2016 Doğan T, MacDougall A, Saidi R, Bateman A, O'Donovan C, Martin MJ. UniProt-DAAC: Domain Architecture Alignment and Classification, a New Method for Automatic Functional Annotation in UniProtKB. Bioinformatics (Oxford, England). PMID 27153729 DOI: 10.1093/Bioinformatics/Btw114  1
2016 Bousfield D, McEntyre J, Velankar S, Papadatos G, Bateman A, Cochrane G, Kim JH, Graef F, Vartak V, Alako B, Blomberg N. Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. F1000research. 5. PMID 27092246 DOI: 10.12688/F1000Research.7911.1  0.01
2016 Sexton JP, Hufford MB, Bateman A, Lowry DB, Meimberg H, Strauss SY, Rice KJ. Climate structures genetic variation across a species' elevation range: a test of range limits hypotheses. Molecular Ecology. PMID 26756973 DOI: 10.1111/Mec.13528  1
2016 Groner ML, Rogers LA, Bateman AW, Connors BM, Frazer LN, Godwin SC, Krkošek M, Lewis MA, Peacock SJ, Rees EE, Revie CW, Schlägel UE. Lessons from sea louse and salmon epidemiology Philosophical Transactions of the Royal Society B: Biological Sciences. 371. DOI: 10.1098/rstb.2015.0203  1
2016 Simblett SK, Ring H, Bateman A. The Dysexecutive Questionnaire Revised (DEX-R): An extended measure of everyday dysexecutive problems after acquired brain injury Neuropsychological Rehabilitation. 1-18. DOI: 10.1080/09602011.2015.1121880  1
2016 Thomas DC, Clare S, Sowerby JM, Pardo M, Juss JK, Goulding DA, Weyden LVd, Storisteanu DML, Prakash A, Espeli M, Flint S, Lee JC, Hoenderdos K, Kane L, Harcourt K, ... ... Bateman A, et al. Role of Eros, a novel transmembrane protein, in regulation of host defence The Lancet. 387. DOI: 10.1016/S0140-6736(16)00399-8  1
2016 Bateman AC, Shaw EC. Breast pathology Surgery (United Kingdom). 34: 1-7. DOI: 10.1016/j.mpsur.2015.10.002  1
2016 DeVore M, Gandhi N, Bateman A. Virtual redundancy for safety assurance in the presence of sensor failures 2016 Aiaa Guidance, Navigation, and Control Conference 1
2015 Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research. PMID 26673716 DOI: 10.1093/Nar/Gkv1344  1
2015 Bateman AW, Neubert MG, Krkošek M, Lewis MA. Generational Spreading Speed and the Dynamics of Population Range Expansion. The American Naturalist. 186: 362-75. PMID 26655354 DOI: 10.1086/682276  1
2015 Horne J, Carr NJ, Bateman AC, Kandala N, Adams J, Silva S, Ryder I. A comparison of formalin and GEWF in fixation of colorectal carcinoma specimens: rates of lymph node retrieval and effect on TNM staging. Journal of Clinical Pathology. PMID 26621110 DOI: 10.1136/jclinpath-2015-203281  1
2015 Goodwin R, Lincoln N, das Nair R, Bateman A. External memory aids for memory problems in people with multiple sclerosis: A systematic review. Neuropsychological Rehabilitation. 1-22. PMID 26609919 DOI: 10.1080/09602011.2015.1113997  1
2015 Li YJ, Liu P, Gong Z, Wang Y, Bateman AP, Bergoend C, Bertram AK, Martin ST. Chemical Reactivity and Liquid/Non-Liquid States of Secondary Organic Material. Environmental Science & Technology. PMID 26465059 DOI: 10.1021/Acs.Est.5B03392  1
2015 Adams RI, Bateman AC, Bik HM, Meadow JF. Microbiota of the indoor environment: a meta-analysis. Microbiome. 3: 49. PMID 26459172 DOI: 10.1186/s40168-015-0108-3  1
2015 Street AJ, Magee WL, Odell-Miller H, Bateman A, Fachner JC. Home-based neurologic music therapy for upper limb rehabilitation with stroke patients at community rehabilitation stage-a feasibility study protocol. Frontiers in Human Neuroscience. 9: 480. PMID 26441586 DOI: 10.3389/fnhum.2015.00480  1
2015 Fonagy P, Luyten P, Bateman A. Translation: Mentalizing as treatment target in borderline personality disorder. Personality Disorders. 6: 380-92. PMID 26436581 DOI: 10.1037/Per0000113  1
2015 Meadow JF, Altrichter AE, Bateman AC, Stenson J, Brown GZ, Green JL, Bohannan BJ. Humans differ in their personal microbial cloud. Peerj. 3: e1258. PMID 26417541 DOI: 10.7717/peerj.1258  1
2015 Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, et al. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database : the Journal of Biological Databases and Curation. 2015: bav063. PMID 26284514 DOI: 10.1093/Database/Bav063  1
2015 Palfree RG, Bennett HP, Bateman A. The Evolution of the Secreted Regulatory Protein Progranulin. Plos One. 10: e0133749. PMID 26248158 DOI: 10.1371/journal.pone.0133749  1
2015 Bateman AC, Katundu K, Mwanahamuntu MH, Kapambwe S, Sahasrabuddhe VV, Hicks ML, Chi BH, Stringer JS, Parham GP, Chibwesha CJ. The burden of cervical pre-cancer and cancer in HIV positive women in Zambia: a modeling study. Bmc Cancer. 15: 541. PMID 26205980 DOI: 10.1186/s12885-015-1558-5  1
2015 Bateman A, Fonagy P. Borderline Personality Disorder and Mood Disorders: Mentalizing as a Framework for Integrated Treatment. Journal of Clinical Psychology. 71: 792-804. PMID 26190067 DOI: 10.1002/Jclp.22206  1
2015 El-Hachem N, Grossmann P, Blanchet-Cohen A, Bateman AR, Bouchard N, Archambault J, Aerts HJ, Haibe-Kains B. Characterization of Conserved Toxicogenomic Responses in Chemically Exposed Hepatocytes across Species and Platforms. Environmental Health Perspectives. PMID 26173225 DOI: 10.1289/Ehp.1409157  1
2015 Katundu K, Bateman AC, Pfaendler KS, Mwanahamuntu MH, Kapambwe S, Vermund SH, Sahasrabuddhe VV, Msadabwe SC, Stringer JS, Parham GP, Chibwesha CJ. The Effect of Cryotherapy on Human Papillomavirus Clearance Among HIV-Positive Women in Lusaka, Zambia. Journal of Lower Genital Tract Disease. PMID 26125097 DOI: 10.1097/Lgt.0000000000000131  1
2015 Zhao C, Bateman A. Progranulin protects against the tissue damage of acute ischaemic stroke. Brain : a Journal of Neurology. 138: 1770-3. PMID 26106095 DOI: 10.1093/brain/awv123  1
2015 Baxevanis AD, Bateman A. The Importance of Biological Databases in Biological Discovery. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 50: 1.1.1-8. PMID 26094768 DOI: 10.1002/0471250953.bi0101s50  1
2015 Cottom H, Mighell AJ, High A, Bateman AC. Are plasma cell-rich inflammatory conditions of the oral mucosa manifestations of IgG4-related disease? Journal of Clinical Pathology. PMID 26056156 DOI: 10.1136/jclinpath-2014-202814  1
2015 Bateman E, Bateman A. Ethical issues relating to trainee publication requirements. The Clinical Teacher. PMID 26037233 DOI: 10.1111/tct.12393  1
2015 Sclafani F, Peckitt C, Cunningham D, Tait D, Giralt J, Glimelius B, Keränen SR, Bateman A, Hickish T, Tabernero J, Thomas J, Brown G, Oates J, Chau I. Short- and Long-Term Quality of Life and Bowel Function in Patients With MRI-Defined, High-Risk, Locally Advanced Rectal Cancer Treated With an Intensified Neoadjuvant Strategy in the Randomized Phase 2 EXPERT-C Trial. International Journal of Radiation Oncology, Biology, Physics. PMID 26031368 DOI: 10.1016/j.ijrobp.2015.03.038  1
2015 Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR. HMMER web server: 2015 update. Nucleic Acids Research. 43: W30-8. PMID 25943547 DOI: 10.1093/Nar/Gkv397  1
2015 Bateman AC, Shepherd NA. UK guidance for the pathological reporting of serrated lesions of the colorectum. Journal of Clinical Pathology. PMID 25934843 DOI: 10.1136/jclinpath-2015-203016  1
2015 Prakash A, Bateman A. Domain atrophy creates rare cases of functional partial protein domains. Genome Biology. 16: 88. PMID 25924720 DOI: 10.1186/S13059-015-0655-8  1
2015 Simusika P, Bateman AC, Theo A, Kwenda G, Mfula C, Chentulo E, Monze M. Identification of viral and bacterial pathogens from hospitalized children with severe acute respiratory illness in Lusaka, Zambia, 2011-2012: a cross-sectional study. Bmc Infectious Diseases. 15: 52. PMID 25888024 DOI: 10.1186/s12879-015-0779-1  1
2015 Parham GP, Mwanahamuntu MH, Kapambwe S, Muwonge R, Bateman AC, Blevins M, Chibwesha CJ, Pfaendler KS, Mudenda V, Shibemba AL, Chisele S, Mkumba G, Vwalika B, Hicks ML, Vermund SH, et al. Population-level scale-up of cervical cancer prevention services in a low-resource setting: development, implementation, and evaluation of the cervical cancer prevention program in Zambia. Plos One. 10: e0122169. PMID 25885821 DOI: 10.1371/Journal.Pone.0122169  1
2015 Mukherjee S, Hurt CN, Gwynne S, Bateman A, Gollins S, Radhakrishna G, Hawkins M, Canham J, Lewis W, Grabsch HI, Sharma RA, Wade W, Maggs R, Tranter B, Roberts A, et al. NEOSCOPE: a randomised Phase II study of induction chemotherapy followed by either oxaliplatin/capecitabine or paclitaxel/carboplatin based chemoradiation as pre-operative regimen for resectable oesophageal adenocarcinoma. Bmc Cancer. 15: 48. PMID 25880814 DOI: 10.1186/s12885-015-1062-y  1
2015 Bateman AH, Way AC. Corpectomy with adjacent-level kyphoplasty to treat metastatic lung cancer in three contiguous cervical vertebrae causing focal neurologic compromise. Global Spine Journal. 5: 140-3. PMID 25844288 DOI: 10.1055/s-0034-1387809  0.01
2015 Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, ... ... Bateman A, et al. Key challenges for the creation and maintenance of specialist protein resources. Proteins. 83: 1005-13. PMID 25820941 DOI: 10.1002/Prot.24803  1
2015 Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, et al. Evolution of the indoor biome. Trends in Ecology & Evolution. 30: 223-32. PMID 25770744 DOI: 10.1016/J.Tree.2015.02.001  1
2015 Bateman AW, Gunderson J, Mulder R. Treatment of personality disorder. Lancet (London, England). 385: 735-43. PMID 25706219 DOI: 10.1016/S0140-6736(14)61394-5  1
2015 Kayamba V, Bateman AC, Asombang AW, Shibemba A, Zyambo K, Banda T, Soko R, Kelly P. HIV infection and domestic smoke exposure, but not human papillomavirus, are risk factors for esophageal squamous cell carcinoma in Zambia: a case-control study. Cancer Medicine. 4: 588-95. PMID 25641622 DOI: 10.1002/cam4.434  1
2015 Janikashvili N, Trad M, Gautheron A, Samson M, Lamarthée B, Bonnefoy F, Lemaire-Ewing S, Ciudad M, Rekhviashvili K, Seaphanh F, Gaugler B, Perruche S, Bateman A, Martin L, Audia S, et al. Human monocyte-derived suppressor cells control graft-versus-host disease by inducing regulatory forkhead box protein 3-positive CD8(+) T lymphocytes. The Journal of Allergy and Clinical Immunology. 135: 1614-1624.e4. PMID 25630940 DOI: 10.1016/J.Jaci.2014.12.1868  1
2015 Bateman AC, Ashton-Key MR, Jogai S. Lymph node granulomas in immunoglobulin G4-related disease. Histopathology. PMID 25620085 DOI: 10.1111/his.12658  1
2015 Daubney M, Bateman A. Mentalization-based therapy (MBT): an overview. Australasian Psychiatry : Bulletin of Royal Australian and New Zealand College of Psychiatrists. 23: 132-5. PMID 25616313 DOI: 10.1177/1039856214566830  1
2015 Bateman AC, Katundu K, Polepole P, Shibemba A, Mwanahamuntu M, Dittmer DP, Parham GP, Chibwesha CJ. Identification of human papillomaviruses from formalin-fixed, paraffin-embedded pre-cancer and invasive cervical cancer specimens in Zambia: a cross-sectional study. Virology Journal. 12: 2. PMID 25591541 DOI: 10.1186/s12985-014-0234-8  1
2015 Corcoran JP, Culver EL, Psallidas I, Hallifax RJ, Davies SJ, Bateman AC, Barnes E, Rahman NM. A 63-year-old man with a recurrent right-sided pleural effusion. Thorax. 70: 504-7. PMID 25572598 DOI: 10.1136/thoraxjnl-2014-206423  1
2015 Bateman AC, Chibwesha CJ, Parham GP. Minimizing verification bias in cervical cancer screening of HIV-infected women. International Journal of Gynaecology and Obstetrics: the Official Organ of the International Federation of Gynaecology and Obstetrics. 128: 269-70. PMID 25467910 DOI: 10.1016/j.ijgo.2014.09.007  1
2015 Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, et al. The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Research. 43: D213-21. PMID 25428371 DOI: 10.1093/Nar/Gku1243  1
2015 Bateman AP, Bertram AK, Martin ST. Hygroscopic Influence on the Semisolid-to-Liquid Transition of Secondary Organic Materials. The Journal of Physical Chemistry. A. 119: 4386-95. PMID 25397730 DOI: 10.1021/Jp508521C  1
2015 Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Rfam 12.0: updates to the RNA families database. Nucleic Acids Research. 43: D130-7. PMID 25392425 DOI: 10.1093/Nar/Gku1063  1
2015 Shahid M, Mubeen A, Tse J, Kakar S, Bateman AC, Borger D, Rivera MN, Ting DT, Deshpande V. Branched chain in situ hybridization for albumin as a marker of hepatocellular differentiation: evaluation of manual and automated in situ hybridization platforms. The American Journal of Surgical Pathology. 39: 25-34. PMID 25353287 DOI: 10.1097/Pas.0000000000000343  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/Nar/Gku991  1
2015 Zhang Y, Sanchez MS, Douet C, Wang Y, Bateman AP, Gong Z, Kuwata M, Renbaum-Wolff L, Sato BB, Liu PF, Bertram AK, Geiger FM, Martin ST. Changing shapes and implied viscosities of suspended submicron particles Atmospheric Chemistry and Physics. 15: 7819-7829. DOI: 10.5194/Acp-15-7819-2015  1
2015 Peacock SJ, Krkošek M, Bateman AW, Lewis MA. Parasitism and food web dynamics of juvenile Pacific salmon Ecosphere. 6. DOI: 10.1890/Es15-00337.1  1
2015 Bateman AC, Katundu K, Mwanahamuntu MH, Kapambwe S, Sahasrabuddhe VV, Hicks ML, Chi BH, Stringer JSA, Parham GP, Chibwesha CJ. The burden of cervical pre-cancer and cancer in HIV positive women in Zambia: A modeling study Bmc Cancer. 15. DOI: 10.1186/s12885-015-1558-5  1
2015 Bateman AH, Bradford S, Hester TW, Kubelka I, Tremlett J, Morris V, Pendry E, Kavarthapu V, Edmonds ME. Modern Orthopedic Inpatient Care of the Orthopedic Patient With Diabetic Foot Disease International Journal of Lower Extremity Wounds. 14: 384-392. DOI: 10.1177/1534734615596114  1
2015 Niemi K, Bateman A. ‘Cheaters and Stalkers’: Accusations in a classroom Discourse Studies. 17: 83-98. DOI: 10.1177/1461445614557755  1
2015 Ciervo F, Papa MN, Medina V, Bateman A. Simulation of flash floods in ungauged basins using post-event surveys and numerical modelling Journal of Flood Risk Management. 8: 343-355. DOI: 10.1111/jfr3.12103  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093l/narlgku991  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093/nar/gku991  1
2015 Bateman A, Martin MJ, O'Donovan C, Magrane M, Apweiler R, Alpi E, Antunes R, Arganiska J, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, Chavali G, Cibrian-Uhalte E, et al. UniProt: A hub for protein information Nucleic Acids Research. 43: D204-D212. DOI: 10.1093/nar/gku989  1
2015 Waters J, Bateman A. Revealing the interactional features of learning and teaching moments in outdoor activity European Early Childhood Education Research Journal. 23: 264-276. DOI: 10.1080/1350293X.2013.798099  1
2015 Herrero A, Bateman A, Medina V. Water flow and sediment transport in a 90° channel diversion: An experimental study Journal of Hydraulic Research. 53: 253-263. DOI: 10.1080/00221686.2014.989457  1
2015 Mujal-Colilles A, Dalziel SB, Bateman A. Vortex rings impinging on permeable boundaries Physics of Fluids. 27. DOI: 10.1063/1.4906504  1
2015 Bateman AP, Gong Z, Liu P, Sato B, Cirino G, Zhang Y, Artaxo P, Bertram AK, Manzi AO, Rizzo LV, Souza RAF, Zaveri RA, Martin ST. Sub-micrometre particulate matter is primarily in liquid form over Amazon rainforest Nature Geoscience. 9: 34-37. DOI: 10.1038/Ngeo2599  1
2015 Chevalier GG, Medina V, Hürlimann M, Bateman A. Morpho-fluvial analysis of headwater catchments: an example from the Central-Eastern Pyrenees Environmental Earth Sciences. 73: 6495-6509. DOI: 10.1007/s12665-014-3871-8  1
2015 Bregoli F, Medina V, Chevalier G, Hürlimann M, Bateman A. Debris-flow susceptibility assessment at regional scale: Validation on an alpine environment Landslides. 12: 437-454. DOI: 10.1007/s10346-014-0493-x  1
2014 Simblett SK, Gracey F, Ring H, Bateman A. Measuring coping style following acquired brain injury: A modification of the Coping Inventory for Stressful Situations Using Rasch analysis. The British Journal of Clinical Psychology / the British Psychological Society. PMID 25546116 DOI: 10.1111/Bjc.12070  1
2014 Rawlings ND, Barrett AJ, Bateman A. Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 1.25.1-1.25.33. PMID 25501939 DOI: 10.1002/0471250953.Bi0125S48  1
2014 Tao S, Lu X, Levac N, Bateman AP, Nguyen TB, Bones DL, Nizkorodov SA, Laskin J, Laskin A, Yang X. Molecular characterization of organosulfates in organic aerosols from Shanghai and Los Angeles urban areas by nanospray-desorption electrospray ionization high-resolution mass spectrometry. Environmental Science & Technology. 48: 10993-1001. PMID 25184338 DOI: 10.1021/Es5024674  1
2014 Bateman AW, Lewis MA, Gall G, Manser MB, Clutton-Brock TH. Territoriality and home-range dynamics in meerkats, Suricata suricatta: a mechanistic modelling approach. The Journal of Animal Ecology. PMID 24995457 DOI: 10.1111/1365-2656.12267  1
2014 Bateman AC, Parham GP, Sahasrabuddhe VV, Mwanahamuntu MH, Kapambwe S, Katundu K, Nkole T, Mulundika J, Pfaendler KS, Hicks ML, Shibemba A, Vermund SH, Stringer JS, Chibwesha CJ. Clinical performance of digital cervicography and cytology for cervical cancer screening in HIV-infected women in Lusaka, Zambia. Journal of Acquired Immune Deficiency Syndromes (1999). 67: 212-5. PMID 24977474 DOI: 10.1097/Qai.0000000000000270  1
2014 Huchard E, Charmantier A, English S, Bateman A, Nielsen JF, Clutton-Brock T. Additive genetic variance and developmental plasticity in growth trajectories in a wild cooperative mammal. Journal of Evolutionary Biology. 27: 1893-904. PMID 24962704 DOI: 10.1111/Jeb.12440  1
2014 Gwynne S, Wijnhoven BP, Hulshof M, Bateman A. Role of chemoradiotherapy in oesophageal cancer -- adjuvant and neoadjuvant therapy. Clinical Oncology (Royal College of Radiologists (Great Britain)). 26: 522-32. PMID 24947234 DOI: 10.1016/j.clon.2014.05.015  1
2014 Bateman AW, Vos M, Anholt BR. When to defend: antipredator defenses and the predation sequence. The American Naturalist. 183: 847-55. PMID 24823827 DOI: 10.1086/675903  1
2014 Rathinam C, Bateman A, Peirson J, Skinner J. Observational gait assessment tools in paediatrics--a systematic review. Gait & Posture. 40: 279-85. PMID 24798609 DOI: 10.1016/j.gaitpost.2014.04.187  1
2014 Ozgul A, Bateman AW, English S, Coulson T, Clutton-Brock TH. Linking body mass and group dynamics in an obligate cooperative breeder. The Journal of Animal Ecology. 83: 1357-66. PMID 24749732 DOI: 10.1111/1365-2656.12239  1
2014 Das D, Murzin AG, Rawlings ND, Finn RD, Coggill P, Bateman A, Godzik A, Aravind L. Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis. Bmc Bioinformatics. 15: 75. PMID 24646163 DOI: 10.1186/1471-2105-15-75  1
2014 Hopwood CJ, Swenson C, Bateman A, Yeomans FE, Gunderson JG. Approaches to psychotherapy for borderline personality: demonstrations by four master clinicians. Personality Disorders. 5: 108-16. PMID 24588067 DOI: 10.1037/Per0000055  1
2014 Bateman AC. Pathology of serrated colorectal lesions. Journal of Clinical Pathology. 67: 865-74. PMID 24561317 DOI: 10.1136/jclinpath-2014-202175  1
2014 Robinson P, Barrett B, Bateman A, Hakeem A, Hellier J, Lemonsky F, Rutterford C, Schmidt U, Fonagy P. Study Protocol for a randomized controlled trial of mentalization based therapy against specialist supportive clinical management in patients with both eating disorders and symptoms of borderline personality disorder. Bmc Psychiatry. 14: 51. PMID 24555511 DOI: 10.1186/1471-244X-14-51  1
2014 Bateman AR, El-Hachem N, Beck AH, Aerts HJ, Haibe-Kains B. Importance of collection in gene set enrichment analysis of drug response in cancer cell lines. Scientific Reports. 4: 4092. PMID 24522610 DOI: 10.1038/srep04092  1
2014 Horne J, Bateman AC, Carr NJ, Ryder I. Lymph node revealing solutions in colorectal cancer: should they be used routinely? Journal of Clinical Pathology. 67: 383-8. PMID 24493650 DOI: 10.1136/jclinpath-2013-202146  1
2014 Chetty R, Bateman AC, Torlakovic E, Wang LM, Gill P, Al-Badri A, Arends M, Biddlestone L, Burroughs S, Carey F, Cowlishaw D, Crowther S, Da Costa P, Dada MA, d'Adhemar C, et al. A pathologist's survey on the reporting of sessile serrated adenomas/polyps. Journal of Clinical Pathology. 67: 426-30. PMID 24399034 DOI: 10.1136/Jclinpath-2013-202128  1
2014 Bo S, Abu-Akel A, Kongerslev M, Haahr UH, Bateman A. Mentalizing mediates the relationship between psychopathy and type of aggression in schizophrenia. The Journal of Nervous and Mental Disease. 202: 55-63. PMID 24375213 DOI: 10.1097/NMD.0000000000000067  1
2014 VanWormer JJ, Bateman AC, Irving SA, Kieke BA, Shay DK, Belongia EA. Reply to Fedson. The Journal of Infectious Diseases. 209: 1301-2. PMID 24342987 DOI: 10.1093/Infdis/Jit810  1
2014 Finn RD, Miller BL, Clements J, Bateman A. iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Research. 42: D364-73. PMID 24297255 DOI: 10.1093/Nar/Gkt1210  1
2014 Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Pfam: the protein families database. Nucleic Acids Research. 42: D222-30. PMID 24288371 DOI: 10.1093/Nar/Gkt1223  1
2014 Apweiler R, Bateman A, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, Alpi E, Antunes R, Arganiska J, Casanova EB, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, et al. Activities at the Universal Protein Resource (UniProt) Nucleic Acids Research. 42: D191-D198. PMID 24253303 DOI: 10.1093/Nar/Gkt1140  1
2014 Schreiber F, Patricio M, Muffato M, Pignatelli M, Bateman A. TreeFam v9: a new website, more species and orthology-on-the-fly. Nucleic Acids Research. 42: D922-5. PMID 24194607 DOI: 10.1093/Nar/Gkt1055  1
2014 Rawlings ND, Waller M, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research. 42: D503-9. PMID 24157837 DOI: 10.1093/nar/gkt953  1
2014 Bateman AG, Neilens H, Gericke CA, George J, Freeman RM. Is there a need for postoperative follow-up after routine urogynaecological procedures? Patients will self-present if they have problems. International Urogynecology Journal. 25: 381-6. PMID 24105409 DOI: 10.1007/s00192-013-2229-1  1
2014 English S, Bateman AW, Mares R, Ozgul A, Clutton-Brock TH. Maternal, social and abiotic environmental effects on growth vary across life stages in a cooperative mammal. The Journal of Animal Ecology. 83: 332-42. PMID 24102215 DOI: 10.1111/1365-2656.12149  1
2014 Dogan T, Bateman A, Martin M. UniProt domain architecture alignment: a new approach for protein similarity search using InterPro domain annotation F1000research. 5. DOI: 10.7490/F1000Research.1096836.1  1
2014 Gandhi N, Richards ND, Bateman AJ. Simulator evaluation of an in-cockpit cueing system for upset recovery Aiaa Guidance, Navigation, and Control Conference. DOI: 10.2514/6.2014-0444  1
2014 Gilbert JA, Ball M, Blainey P, Blaser MJ, Bohannan BJM, Bateman A, Bunge J, Dominguez-Bello MG, Epstein S, Fierer N, Gevers D, Grikscheit T, Hamdan LJ, Harvey J, Huttenhower C, et al. Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012 Standards in Genomic Sciences. DOI: 10.1186/1944-3277-9-13  1
2014 Mccarthy TK, Nowak D, Grennan J, Bateman A, Conneely B, Macnamara R. Spawner escapement of European eel (Anguilla anguilla) from the River Erne, Ireland Ecology of Freshwater Fish. 23: 21-32. DOI: 10.1111/eff.12091  1
2014 Boyhan GE, Torrance RL, Riner CM, Cook IV. MJ, Dollar MA, Curry DS, Hill CR, Thigpen DR, Bateman AG. Five-Year Evaluation of Short-Day Onion Varieties International Journal of Vegetable Science. 20: 150-184. DOI: 10.1080/19315260.2013.788595  1
2014 Bateman A. The Political Influence of the Russian Security Services Journal of Slavic Military Studies. 27: 380-403. DOI: 10.1080/13518046.2014.932626  1
2014 Bateman AP, Belassein H, Martin ST. Impactor apparatus for the study of particle rebound: Relative humidity and capillary forces Aerosol Science and Technology. 48: 42-52. DOI: 10.1080/02786826.2013.853866  1
2014 Alanko GA, Jaques B, Bateman A, Butt DP. Mechanochemical synthesis and spark plasma sintering of the cerium silicides Journal of Alloys and Compounds. 616: 306-311. DOI: 10.1016/J.Jallcom.2014.07.129  1
2014 Mares R, Bateman AW, English S, Clutton-Brock TH, Young AJ. Timing of predispersal prospecting is influenced by environmental, social and state-dependent factors in meerkats Animal Behaviour. 88: 185-193. DOI: 10.1016/J.Anbehav.2013.11.025  1
2014 Mujal-Colilles A, Mier JM, Christensen KT, Bateman A, Garcia MH. PIV experiments in rough-wall, laminar-to-turbulent, oscillatory boundary-layer flows Experiments in Fluids. 55. DOI: 10.1007/S00348-013-1633-0  1
2014 Meadow JF, Altrichter AE, Bateman AC, Stenson J, Brown GZ, Green JL, Bohannan BJM. What's in your personal microbial cloud? Indoor Air 2014 - 13th International Conference On Indoor Air Quality and Climate. 652-654.  1
2014 Bateman AJ, Cooper J, Devore M, Wasson K, Knight J, Hocking A. A proposed approach for use of assurance cases in certification of airborne software 52nd Aiaa Aerospace Sciences Meeting - Aiaa Science and Technology Forum and Exposition, Scitech 2014 1
2014 Bateman AJ, Cooper J, Devore M, Wasson K, Knight J, Hocking A. A proposed approach for use of assurance cases in certification of airborne software 52nd Aiaa Aerospace Sciences Meeting - Aiaa Science and Technology Forum and Exposition, Scitech 2014 1
2014 Bateman A. Challenges of converging U.S. gas, power markets Pipeline and Gas Journal. 241.  1
2013 Bateman A, Fonagy P. Mentalization-Based Treatment. Psychoanalytic Inquiry. 33: 595-613. PMID 26157198 DOI: 10.1080/07351690.2013.835170  1
2013 Noble F, Nolan L, Bateman AC, Byrne JP, Kelly JJ, Bailey IS, Sharland DM, Rees CN, Iveson TJ, Underwood TJ, Bateman AR. Refining pathological evaluation of neoadjuvant therapy for adenocarcinoma of the esophagus. World Journal of Gastroenterology : Wjg. 19: 9282-93. PMID 24409055 DOI: 10.3748/wjg.v19.i48.9282  1
2013 Child S, Sheaff R, Boiko O, Bateman A, Gericke CA. Has incentive payment improved venous thrombo-embolism risk assessment and treatment of hospital in-patients? F1000research. 2: 41. PMID 24358864 DOI: 10.12688/f1000research.2-41.v1  1
2013 Child S, Bateman A, Shuttleworth J, Gericke C, Freeman R. Can primary care nurse administered pelvic floor muscle training (PFMT) be implemented for the prevention and treatment of urinary incontinence? A study protocol. F1000research. 2: 47. PMID 24358852 DOI: 10.12688/f1000research.2-47.v1  1
2013 Gaudet P, Munoz-Torres M, Robinson-Rechavi M, Attwood T, Bateman A, Cherry JM, Kania R, O'Donovan C, Yamasaki C. DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. Database : the Journal of Biological Databases and Curation. 2013: bat077. PMID 24319113 DOI: 10.1093/Database/Bat077  1
2013 Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A. LUD, a new protein domain associated with lactate utilization. Bmc Bioinformatics. 14: 341. PMID 24274019 DOI: 10.1186/1471-2105-14-341  1
2013 Eberhardt RY, Chang Y, Bateman A, Murzin AG, Axelrod HL, Hwang WC, Aravind L. Filling out the structural map of the NTF2-like superfamily. Bmc Bioinformatics. 14: 327. PMID 24246060 DOI: 10.1186/1471-2105-14-327  1
2013 Leroi I, Woolham J, Gathercole R, Howard R, Dunk B, Fox C, O'Brien J, Bateman A, Poland F, Bentham P, Burns A, Davies A, Forsyth K, Gray R, Knapp M, et al. Does telecare prolong community living in dementia? A study protocol for a pragmatic, randomised controlled trial. Trials. 14: 349. PMID 24152600 DOI: 10.1186/1745-6215-14-349  1
2013 Williams S, Bateman A, O'Kelly I. Altered expression of two-pore domain potassium (K2P) channels in cancer. Plos One. 8: e74589. PMID 24116006 DOI: 10.1371/journal.pone.0074589  1
2013 Aravinthan A, Pietrosi G, Hoare M, Jupp J, Marshall A, Verrill C, Davies S, Bateman A, Sheron N, Allison M, Alexander GJ. Hepatocyte expression of the senescence marker p21 is linked to fibrosis and an adverse liver-related outcome in alcohol-related liver disease. Plos One. 8: e72904. PMID 24086266 DOI: 10.1371/journal.pone.0072904  1
2013 Bateman A, Kelso J, Mietchen D, Macintyre G, Di Domenico T, Abeel T, Logan DW, Radivojac P, Rost B. ISCB computational biology Wikipedia competition. Plos Computational Biology. 9: e1003242. PMID 24068913 DOI: 10.1371/Journal.Pcbi.1003242  1
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, ... ... Bateman A, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/Journal.Pbio.1001638  1
2013 Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L, Murzin AG, Bateman A. Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. Bmc Bioinformatics. 14: 265. PMID 24004689 DOI: 10.1186/1471-2105-14-265  1
2013 Pandyan AD, Radford K, Ashford S, Bateman A, Burton C, Connell L, Gibson A, Harris N, Hoffman K, Nair R, Shaw L, Turton A, Tyson SF, van Wijck F. NICE on rehabilitation. New guidelines on rehabilitation likely to restrict practices and stifle innovation. Bmj (Clinical Research Ed.). 347: f4876. PMID 23920259 DOI: 10.1136/bmj.f4876  1
2013 Bateman A, Fonagy P. Impact of clinical severity on outcomes of mentalisation-based treatment for borderline personality disorder. The British Journal of Psychiatry : the Journal of Mental Science. 203: 221-7. PMID 23887998 DOI: 10.1192/Bjp.Bp.112.121129  1
2013 Doyle VJ, Bateman AC, Theaker JM. An unusual breast mass: primary synovial sarcoma. Bmj Case Reports. 2013. PMID 23784772 DOI: 10.1136/bcr-2013-010468  1
2013 Toh H, Cao M, Daniels E, Bateman A. Expression of the growth factor progranulin in endothelial cells influences growth and development of blood vessels: a novel mouse model. Plos One. 8: e64989. PMID 23741441 DOI: 10.1371/journal.pone.0064989  1
2013 Bateman AG, Sheaff R, Child S, Boiko O, Ukoumunne OC, Nokes T, Copplestone A, Gericke CA. The implementation of NICE guidance on venous thromboembolism risk assessment and prophylaxis: a before-after observational study to assess the impact on patient safety across four hospitals in England. Bmc Health Services Research. 13: 203. PMID 23734903 DOI: 10.1186/1472-6963-13-203  1
2013 Buljan M, Chalancon G, Dunker AK, Bateman A, Balaji S, Fuxreiter M, Babu MM. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Current Opinion in Structural Biology. 23: 443-50. PMID 23706950 DOI: 10.1016/J.Sbi.2013.03.006  1
2013 Noble F, Hopkins J, Curtis N, Kelly JJ, Bailey IS, Byrne JP, Bateman AC, Bateman AR, Underwood TJ. The role of systemic inflammatory and nutritional blood-borne markers in predicting response to neoadjuvant chemotherapy and survival in oesophagogastric cancer. Medical Oncology (Northwood, London, England). 30: 596. PMID 23690267 DOI: 10.1007/s12032-013-0596-6  1
2013 Bateman AW, Ozgul A, Nielsen JF, Coulson T, Clutton-Brock TH. Social structure mediates environmental effects on group size in an obligate cooperative breeder, Suricata suricatta. Ecology. 94: 587-97. PMID 23687885 DOI: 10.1890/11-2122.1  1
2013 Meadow JF, Bateman AC, Herkert KM, O'Connor TK, Green JL. Significant changes in the skin microbiome mediated by the sport of roller derby. Peerj. 1: e53. PMID 23638391 DOI: 10.7717/peerj.53  1
2013 Renbaum-Wolff L, Grayson JW, Bateman AP, Kuwata M, Sellier M, Murray BJ, Shilling JE, Martin ST, Bertram AK. Viscosity of α-pinene secondary organic material and implications for particle growth and reactivity. Proceedings of the National Academy of Sciences of the United States of America. 110: 8014-9. PMID 23620520 DOI: 10.1073/Pnas.1219548110  1
2013 Mistry J, Coggill P, Eberhardt RY, Deiana A, Giansanti A, Finn RD, Bateman A, Punta M. The challenge of increasing Pfam coverage of the human proteome. Database : the Journal of Biological Databases and Curation. 2013: bat023. PMID 23603847 DOI: 10.1093/Database/Bat023  1
2013 Mistry J, Finn RD, Eddy SR, Bateman A, Punta M. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Research. 41: e121. PMID 23598997 DOI: 10.1093/Nar/Gkt263  1
2013 Bateman AC, Culver EL, Sommerlad M, Chetty R. Intraduct papillary mucinous neoplasm of the pancreas: a tumour linked with IgG4-related disease? Journal of Clinical Pathology. 66: 671-5. PMID 23596150 DOI: 10.1136/jclinpath-2013-201516  1
2013 Gwynne S, Falk S, Gollins S, Wills L, Bateman A, Cummins S, Grabsch H, Hawkins MA, Maggs R, Mukherjee S, Radhakrishna G, Roy R, Sharma RA, Spezi E, Crosby T. Oesophageal Chemoradiotherapy in the UK--current practice and future directions. Clinical Oncology (Royal College of Radiologists (Great Britain)). 25: 368-77. PMID 23489868 DOI: 10.1016/j.clon.2013.01.006  1
2013 Barquist L, Langridge GC, Turner DJ, Phan MD, Turner AK, Bateman A, Parkhill J, Wain J, Gardner PP. A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Research. 41: 4549-64. PMID 23470992 DOI: 10.1093/Nar/Gkt148  1
2013 Cuberos-Urbano G, Caracuel A, Vilar-López R, Valls-Serrano C, Bateman A, Verdejo-García A. Ecological validity of the Multiple Errands Test using predictive models of dysexecutive problems in everyday life. Journal of Clinical and Experimental Neuropsychology. 35: 329-36. PMID 23458357 DOI: 10.1080/13803395.2013.776011  1
2013 Eberhardt RY, Bartholdson SJ, Punta M, Bateman A. The SHOCT domain: a widespread domain under-represented in model organisms. Plos One. 8: e57848. PMID 23451277 DOI: 10.1371/Journal.Pone.0057848  1
2013 Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, ... ... Bateman A, et al. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology. 14: R11. PMID 23375108 DOI: 10.1186/Gb-2013-14-2-R11  1
2013 Bateman AC, Kieke BA, Irving SA, Meece JK, Shay DK, Belongia EA. Effectiveness of monovalent 2009 pandemic influenza A virus subtype H1N1 and 2010-2011 trivalent inactivated influenza vaccines in Wisconsin during the 2010-2011 influenza season. The Journal of Infectious Diseases. 207: 1262-9. PMID 23341536 DOI: 10.1093/infdis/jit020  1
2013 Tauffenberger A, Chitramuthu BP, Bateman A, Bennett HP, Parker JA. Reduction of polyglutamine toxicity by TDP-43, FUS and progranulin in Huntington's disease models. Human Molecular Genetics. 22: 782-94. PMID 23172908 DOI: 10.1093/hmg/dds485  0.01
2013 Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Rfam 11.0: 10 years of RNA families. Nucleic Acids Research. 41: D226-32. PMID 23125362 DOI: 10.1093/Nar/Gks1005  1
2013 Karterud S, Pedersen G, Engen M, Johansen MS, Johansson PN, Schlüter C, Urnes O, Wilberg T, Bateman AW. The MBT Adherence and Competence Scale (MBT-ACS): development, structure and reliability. Psychotherapy Research : Journal of the Society For Psychotherapy Research. 23: 705-17. PMID 22916991 DOI: 10.1080/10503307.2012.708795  1
2013 Naghibi M, Ahmed A, al Badri AM, Bateman AC, Shepherd HA, Gordon JN. The successful treatment of IgG4-positive colitis with adalimumab in a patient with IgG4-related sclerosing disease--a new subtype of aggressive colitis? Journal of Crohn's & Colitis. 7: e81-4. PMID 22647639 DOI: 10.1016/j.crohns.2012.05.003  1
2013 Bateman AC, Karasin AI, Olsen CW. Differentiated swine airway epithelial cell cultures for the investigation of influenza A virus infection and replication Influenza and Other Respiratory Viruses. 7: 139-150. PMID 22530566 DOI: 10.1111/j.1750-2659.2012.00371.x  1
2013 Papa MN, Medina V, Ciervo F, Bateman A. Derivation of critical rainfall thresholds for shallow landslides as a tool for debris flow early warning systems Hydrology and Earth System Sciences. 17: 4095-4107. DOI: 10.5194/hess-17-4095-2013  1
2013 Bateman A. Foreword Life After Brain Injury: Survivors' Stories. xii-xiii. DOI: 10.4324/9780203370315  1
2013 Loschiavo-Alvares FQ, Sediyama CYN, Neves FS, Corrêa H, Malloy-Diniz LF, Bateman A. Neuropsychological rehabilitation for bipolar disorder - A single case design Translational Neuroscience. 4: 96-103. DOI: 10.2478/S13380-013-0105-6  1
2013 Bateman A, Danby S. Recovering from the earthquake: Early childhood teachers and children collaboratively telling stories about their experiences Disaster Prevention and Management. 22: 467-479. DOI: 10.1108/DPM-10-2013-0177  1
2013 Riskin SH, Small G, Mikkelsen R, Metson GS, Bateman A, Cooper J, Hanserud OS, Haygarth PM, Laspoumaderes C, McCrackin M, Remington S. Phosphorus in Urban and Agricultural Landscapes: P is for Preservation Phosphorus, Food, and Our Future. DOI: 10.1093/acprof:osobl/9780199916832.003.0005  1
2013 Bateman A. Introduction: Sport, music, identities Sport in Society. 17: 293-302. DOI: 10.1080/17430437.2013.810422  1
2013 Bateman A. Playing Away: The construction and reception of a football opera (interview with the composer Benedict Mason) Sport in Society. 17: 358-370. DOI: 10.1080/17430437.2013.810421  1
2013 Bateman A. Responding to children's answers: questions embedded in the social context of early childhood education Early Years. 33: 275-288. DOI: 10.1080/09575146.2013.800844  1
2013 Culver EL, Bateman AC. General principles of IgG4-related disease Diagnostic Histopathology. 19: 111-118. DOI: 10.1016/j.mpdhp.2013.01.003  1
2013 Luna ACdL, Passos CC, Ferreira AO, Bateman A, Miglino MA, Guerra RR. Expression of progranulin during the first stages of liver development in rat Fischer 344 | Expressão da progranulina durante os primeiros estágios de desenvolvimento hepático em ratos Fischer 344 Brazilian Journal of Veterinary Research and Animal Science. 50: 270-278.  1
2013 Giuzio L, Bateman A, Medina V, Sole A, Sdao F. Experimental studies on propagation and entrainment processes of debris flows Rendiconti Online Societa Geologica Italiana. 24: 158-160.  1
2013 Loschiavo-Alvares FQ, Nogueira Sediyama CY, Gomide Vasconcelos A, Neves F, Corrêa H, Malloy-Diniz LF, Bateman A. Clinical application of DEX-R for patients with bipolar disorder type I and II Clinical Neuropsychiatry. 10: 86-94.  1
2012 Chinnery F, King CA, Elliott T, Bateman AR, James E. Viral antigen mediated NKp46 activation of NK cells results in tumor rejection via NK-DC crosstalk. Oncoimmunology. 1: 874-883. PMID 23162755 DOI: 10.4161/onci.20636  1
2012 Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D'Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, et al. Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference. Database : the Journal of Biological Databases and Curation. 2012: bas036. PMID 23110974 DOI: 10.1093/Database/Bas036  1
2012 Sheron N, Moore M, Ansett S, Parsons C, Bateman A. Developing a 'traffic light' test with potential for rational early diagnosis of liver fibrosis and cirrhosis in the community. The British Journal of General Practice : the Journal of the Royal College of General Practitioners. 62: e616-24. PMID 22947582 DOI: 10.3399/bjgp12X654588  0.01
2012 Chetty R, Gill P, Bateman AC, Driman DK, Govender D, Bateman AR, Chua YJ, Greywoode G, Hemmings C, Imat I, Jaynes E, Lee CS, Locketz M, Rowsell C, Rullier A, et al. Pathological grading of regression: an International Study Group perspective. Journal of Clinical Pathology. 65: 865-6. PMID 22859397 DOI: 10.1136/jclinpath-2012-201054  1
2012 Samson M, Audia S, Fraszczak J, Trad M, Ornetti P, Lakomy D, Ciudad M, Leguy V, Berthier S, Vinit J, Manckoundia P, Maillefert JF, Besancenot JF, Aho-Glele S, Olsson NO, ... ... Bateman A, et al. Th1 and Th17 lymphocytes expressing CD161 are implicated in giant cell arteritis and polymyalgia rheumatica pathogenesis. Arthritis and Rheumatism. 64: 3788-98. PMID 22833233 DOI: 10.1002/Art.34647  1
2012 Simblett SK, Badham R, Greening K, Adlam A, Ring H, Bateman A. Validating independent ratings of executive functioning following acquired brain injury using Rasch analysis. Neuropsychological Rehabilitation. 22: 874-89. PMID 22804712 DOI: 10.1080/09602011.2012.703956  1
2012 Buljan M, Chalancon G, Eustermann S, Wagner GP, Fuxreiter M, Bateman A, Babu MM. Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks. Molecular Cell. 46: 871-83. PMID 22749400 DOI: 10.1016/J.Molcel.2012.05.039  1
2012 Bateman AP, Laskin J, Laskin A, Nizkorodov SA. Applications of high-resolution electrospray ionization mass spectrometry to measurements of average oxygen to carbon ratios in secondary organic aerosols. Environmental Science & Technology. 46: 8315-24. PMID 22747310 DOI: 10.1021/Es3017254  1
2012 Sanders DS, Grabsch H, Harrison R, Bateman A, Going J, Goldin R, Mapstone N, Novelli M, Walker MM, Jankowski J. Comparing virtual with conventional microscopy for the consensus diagnosis of Barrett's neoplasia in the AspECT Barrett's chemoprevention trial pathology audit. Histopathology. 61: 795-800. PMID 22716297 DOI: 10.1111/j.1365-2559.2012.04288.x  1
2012 Boger PC, Shutt JD, Neale JR, Wilson SJ, Bateman AC, Holloway JW, Patel P, Sampson AP. Increased expression of the 5-lipoxygenase pathway and its cellular localization in Barrett's adenocarcinoma. Histopathology. 61: 509-17. PMID 22690932 DOI: 10.1111/j.1365-2559.2012.04258.x  0.01
2012 Culver EL, Bateman AC. IgG4-related disease: can non-classical histopathological features or the examination of clinically uninvolved tissues be helpful in the diagnosis? Journal of Clinical Pathology. 65: 963-9. PMID 22685258 DOI: 10.1136/jclinpath-2012-200932  1
2012 Bateman AW. Treating borderline personality disorder in clinical practice. The American Journal of Psychiatry. 169: 560-3. PMID 22684591 DOI: 10.1176/appi.ajp.2012.12030341  0.01
2012 Coggill P, Bateman A. The YARHG domain: an extracellular domain in search of a function. Plos One. 7: e35575. PMID 22615736 DOI: 10.1371/Journal.Pone.0035575  1
2012 Deshpande V, Zen Y, Chan JK, Yi EE, Sato Y, Yoshino T, Klöppel G, Heathcote JG, Khosroshahi A, Ferry JA, Aalberse RC, Bloch DB, Brugge WR, Bateman AC, Carruthers MN, et al. Consensus statement on the pathology of IgG4-related disease. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 25: 1181-92. PMID 22596100 DOI: 10.1038/Modpathol.2012.72  1
2012 Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A. AntiFam: a tool to help identify spurious ORFs in protein annotation. Database : the Journal of Biological Databases and Curation. 2012: bas003. PMID 22434837 DOI: 10.1093/Database/Bas003  1
2012 Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, O'Donovan C, Xenarios L, Gaudet P. Biocurators and biocuration: surveying the 21st century challenges. Database : the Journal of Biological Databases and Curation. 2012: bar059. PMID 22434828 DOI: 10.1093/Database/Bar059  1
2012 Peng H, Bateman A, Valencia A, Wren JD. Bioimage informatics: a new category in Bioinformatics. Bioinformatics (Oxford, England). 28: 1057. PMID 22399678 DOI: 10.1093/Bioinformatics/Bts111  1
2012 Finn RD, Gardner PP, Bateman A. Making your database available through Wikipedia: the pros and cons. Nucleic Acids Research. 40: D9-12. PMID 22144683 DOI: 10.1093/Nar/Gkr1195  1
2012 Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, et al. The Pfam protein families database. Nucleic Acids Research. 40: D290-301. PMID 22127870 DOI: 10.1093/Nar/Gkr1065  1
2012 Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research. 40: D306-12. PMID 22096229 DOI: 10.1093/Nar/Gkr948  1
2012 Rawlings ND, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Research. 40: D343-50. PMID 22086950 DOI: 10.1093/Nar/Gkr987  1
2011 Jensen LJ, Bateman A. The rise and fall of supervised machine learning techniques. Bioinformatics (Oxford, England). 27: 3331-2. PMID 22101152 DOI: 10.1093/Bioinformatics/Btr585  1
2011 Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/Rna.2750811  1
2011 Rawlings ND, Barrett AJ, Bateman A. Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes. The Journal of Biological Chemistry. 286: 38321-8. PMID 21832066 DOI: 10.1074/Jbc.M111.260026  1
2011 Woodwark C, Bateman A. The characterisation of three types of genes that overlie copy number variable regions. Plos One. 6: e14814. PMID 21637334 DOI: 10.1371/Journal.Pone.0014814  1
2011 Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z. RNIE: genome-wide prediction of bacterial intrinsic terminators. Nucleic Acids Research. 39: 5845-52. PMID 21478170 DOI: 10.1093/Nar/Gkr168  1
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Database : the Journal of Biological Databases and Curation. 2011: baq027. PMID 21205783 DOI: 10.1093/Database/Baq027  1
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research. 39: D7-10. PMID 21097465 DOI: 10.1093/Nar/Gkq1173  1
2011 Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/Nar/Gkq1129  1
2010 Bateman A, Logan DW. Time to underpin Wikipedia wisdom. Nature. 468: 765. PMID 21150981 DOI: 10.1038/468765C  1
2010 Tewari R, Straschil U, Bateman A, Böhme U, Cherevach I, Gong P, Pain A, Billker O. The systematic functional analysis of Plasmodium protein kinases identifies essential regulators of mosquito transmission. Cell Host & Microbe. 8: 377-87. PMID 20951971 DOI: 10.1016/J.Chom.2010.09.006  1
2010 Bakolitsa C, Bateman A, Jin KK, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chiu HJ, Clayton T, Das D, et al. The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1198-204. PMID 20944211 DOI: 10.1107/S1744309109025196  1
2010 Bateman A, Coggill P, Finn RD. DUFs: families in search of function. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1148-52. PMID 20944204 DOI: 10.1107/S1744309110001685  1
2010 Logan DW, Sandal M, Gardner PP, Manske M, Bateman A. Ten simple rules for editing Wikipedia. Plos Computational Biology. 6. PMID 20941386 DOI: 10.1371/Journal.Pcbi.1000941  1
2010 Buljan M, Frankish A, Bateman A. Quantifying the mechanisms of domain gain in animal proteins. Genome Biology. 11: R74. PMID 20633280 DOI: 10.1186/Gb-2010-11-7-R74  1
2010 Wang J, Cetindil I, Ji S, Li C, Xie X, Li G, Feng J. Interactive and fuzzy search: a dynamic way to explore MEDLINE. Bioinformatics (Oxford, England). 26: 2321-7. PMID 20624778 DOI: 10.1093/bioinformatics/btq414  1
2010 Bateman A. Curators of the world unite: the International Society of Biocuration. Bioinformatics (Oxford, England). 26: 991. PMID 20305270 DOI: 10.1093/Bioinformatics/Btq101  1
2010 Schuster-Böckler B, Conrad D, Bateman A. Dosage sensitivity shapes the evolution of copy-number varied regions. Plos One. 5: e9474. PMID 20224824 DOI: 10.1371/Journal.Pone.0009474  1
2010 Gardner PP, Bateman A, Poole AM. SnoPatrol: how many snoRNA genes are there? Journal of Biology. 9: 4. PMID 20122292 DOI: 10.1186/Jbiol211  1
2010 Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. The Pfam protein families database. Nucleic Acids Research. 38: D211-22. PMID 19920124 DOI: 10.1093/nar/gkp985  1
2010 Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, et al. Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. Journal of Molecular Biology. 396: 31-46. PMID 19913036 DOI: 10.1016/J.Jmb.2009.11.006  1
2010 Rawlings ND, Barrett AJ, Bateman A. MEROPS: the peptidase database. Nucleic Acids Research. 38: D227-33. PMID 19892822 DOI: 10.1093/Nar/Gkp971  1
2009 Chang C, Coggill P, Bateman A, Finn RD, Cymborowski M, Otwinowski Z, Minor W, Volkart L, Joachimiak A. The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes. Bmc Structural Biology. 9: 75. PMID 20017931 DOI: 10.1186/1472-6807-9-75  1
2009 Bateman A, Bourne PE. Ten simple rules for chairing a scientific session. Plos Computational Biology. 5: e1000517. PMID 19779547 DOI: 10.1371/Journal.Pcbi.1000517  1
2009 Rawlings ND, Bateman A. Pepsin homologues in bacteria. Bmc Genomics. 10: 437. PMID 19758436 DOI: 10.1186/1471-2164-10-437  1
2009 Buljan M, Bateman A. The evolution of protein domain families. Biochemical Society Transactions. 37: 751-5. PMID 19614588 DOI: 10.1042/Bst0370751  1
2009 Bateman A, Wood M. Cloud computing. Bioinformatics (Oxford, England). 25: 1475. PMID 19435745 DOI: 10.1093/Bioinformatics/Btp274  1
2009 Bateman A, Quackenbush J. Bioinformatics for next generation sequencing. Bioinformatics (Oxford, England). 25: 429. PMID 19202193 DOI: 10.1093/Bioinformatics/Btp037  1
2009 Bateman A, Finn RD, Sims PJ, Wiedmer T, Biegert A, Söding J. Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics (Oxford, England). 25: 159-62. PMID 19010806 DOI: 10.1093/Bioinformatics/Btn595  1
2009 Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/Nar/Gkn766  1
2009 Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, et al. InterPro: the integrative protein signature database. Nucleic Acids Research. 37: D211-5. PMID 18940856 DOI: 10.1093/Nar/Gkn785  1
2009 Mistry J, Cogghill P, Eddy S, Finn R, Tate J, Bateman A. Broadening Pfam Protein Sequence Annotations Nature Precedings. DOI: 10.1038/Npre.2009.3194.1  1
2009 Gardner PP, Bateman AG. A home for RNA families at RNA Biology Rna Biology. 6: 2.  1
2008 Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. The RNA WikiProject: community annotation of RNA families. Rna (New York, N.Y.). 14: 2462-4. PMID 18945806 DOI: 10.1261/Rna.1200508  1
2008 Wren JD, Bateman A. Databases, data tombs and dust in the wind. Bioinformatics (Oxford, England). 24: 2127-8. PMID 18819940 DOI: 10.1093/Bioinformatics/Btn464  1
2008 Coggill P, Finn RD, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18819075 DOI: 10.1002/0471250953.bi0205s23  1
2008 Edwards CA, Mungall AJ, Matthews L, Ryder E, Gray DJ, Pask AJ, Shaw G, Graves JA, Rogers J, Dunham I, Renfree MB, Ferguson-Smith AC. The evolution of the DLK1-DIO3 imprinted domain in mammals. Plos Biology. 6: e135. PMID 18532878 DOI: 10.1371/Journal.Pbio.0060135  1
2008 Sammut SJ, Finn RD, Bateman A. Pfam 10 years on: 10,000 families and still growing. Briefings in Bioinformatics. 9: 210-9. PMID 18344544 DOI: 10.1093/Bib/Bbn010  1
2008 Bushell KM, Söllner C, Schuster-Boeckler B, Bateman A, Wright GJ. Large-scale screening for novel low-affinity extracellular protein interactions. Genome Research. 18: 622-30. PMID 18296487 DOI: 10.1101/gr.7187808  1
2008 Schuster-Böckler B, Bateman A. Protein interactions in human genetic diseases. Genome Biology. 9: R9. PMID 18199329 DOI: 10.1186/Gb-2008-9-1-R9  1
2008 Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A. The Pfam protein families database. Nucleic Acids Research. 36: D281-8. PMID 18039703 DOI: 10.1093/nar/gkm960  1
2008 Bateman A. Editorial Nucleic Acids Research. 36: D1. DOI: 10.1093/nar/gkm1139  1
2007 Schuster-Böckler B, Bateman A. An introduction to hidden Markov models. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Appendix 3A. PMID 18428778 DOI: 10.1002/0471250953.Bia03As18  1
2007 Mistry J, Bateman A, Finn RD. Predicting active site residue annotations in the Pfam database. Bmc Bioinformatics. 8: 298. PMID 17688688 DOI: 10.1186/1471-2105-8-298  1
2007 Schuster-Böckler B, Bateman A. Reuse of structural domain-domain interactions in protein networks. Bmc Bioinformatics. 8: 259. PMID 17640363 DOI: 10.1186/1471-2105-8-259  1
2007 Vanholme B, Grunewald W, Bateman A, Kohchi T, Gheysen G. The tify family previously known as ZIM. Trends in Plant Science. 12: 239-44. PMID 17499004 DOI: 10.1016/J.Tplants.2007.04.004  1
2007 Bateman A, Finn RD. SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics (Oxford, England). 23: 809-14. PMID 17277330 DOI: 10.1093/Bioinformatics/Btm034  1
2007 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, et al. New developments in the InterPro database. Nucleic Acids Research. 35: D224-8. PMID 17202162 DOI: 10.1093/Nar/Gkl841  1
2006 Bateman A, Valencia A. Structural genomics meets computational biology. Bioinformatics (Oxford, England). 22: 2319. PMID 17032684 DOI: 10.1093/Bioinformatics/Btl426  1
2006 Seitan VC, Banks P, Laval S, Majid NA, Dorsett D, Rana A, Smith J, Bateman A, Krpic S, Hostert A, Rollins RA, Erdjument-Bromage H, Tempst P, Benard CY, Hekimi S, et al. Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance. Plos Biology. 4: e242. PMID 16802858 DOI: 10.1371/Journal.Pbio.0040242  1
2006 Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149  1
2006 Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research. 34: D140-4. PMID 16381832 DOI: 10.1093/Nar/Gkj112  1
2006 Valencia A, Bateman A. Software patents in Bioinformatics Bioinformatics. 22: 1415. DOI: 10.1093/Bioinformatics/Btl166  1
2006 Bateman A. Bioinformatics - The new home for protein sequence motifs Bioinformatics. 22: 2. DOI: 10.1093/Bioinformatics/Bti755  1
2005 Schuster-Böckler B, Bateman A. Visualizing profile-profile alignment: pairwise HMM logos. Bioinformatics (Oxford, England). 21: 2912-3. PMID 15827079 DOI: 10.1093/Bioinformatics/Bti434  1
2005 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/Nar/Gki106  1
2005 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/Nar/Gki081  1
2005 Bateman A, Holden MT, Yeats C. The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. Bioinformatics (Oxford, England). 21: 1301-3. PMID 15598841 DOI: 10.1093/Bioinformatics/Bti206  1
2005 Finn RD, Marshall M, Bateman A. iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics (Oxford, England). 21: 410-2. PMID 15353450 DOI: 10.1093/Bioinformatics/Bti011  1
2005 Bateman A, Valencia A. An update from the Bioinformatics Editors Bioinformatics. 21: 4319. DOI: 10.1093/Bioinformatics/Bti768  1
2005 Valencia A, Bateman A. Increasing the impact of Bioinformatics Bioinformatics. 21: 1. DOI: 10.1093/Bioinformatics/Bti185  1
2004 Dillon SC, Bateman A. The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. Bmc Bioinformatics. 5: 109. PMID 15307895 DOI: 10.1186/1471-2105-5-109  0.01
2004 Studholme DJ, Fuerst JA, Bateman A. Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica. Fems Microbiology Letters. 236: 333-40. PMID 15251216 DOI: 10.1016/J.Femsle.2004.06.007  1
2004 Coin L, Bateman A, Durbin R. Enhanced protein domain discovery using taxonomy. Bmc Bioinformatics. 5: 56. PMID 15137915 DOI: 10.1186/1471-2105-5-56  1
2004 Yeats C, Rawlings ND, Bateman A. The PepSY domain: a regulator of peptidase activity in the microbial environment? Trends in Biochemical Sciences. 29: 169-72. PMID 15124630 DOI: 10.1016/J.Tibs.2004.02.004  1
2004 Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121  1
2004 Bateman A, Valencia A. New leadership for Bioinformatics Bioinformatics. 20: 1821. DOI: 10.1093/Bioinformatics/Bth403  1
2003 Finn R, Griffiths-Jones S, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18428696 DOI: 10.1002/0471250953.Bi0205S01  1
2003 Bateman A, Kickhoefer V. The TROVE module: a common element in Telomerase, Ro and Vault ribonucleoproteins. Bmc Bioinformatics. 4: 49. PMID 14563212 DOI: 10.1186/1471-2105-4-49  0.01
2003 Yeats C, Bateman A. The BON domain: a putative membrane-binding domain. Trends in Biochemical Sciences. 28: 352-5. PMID 12878000 DOI: 10.1016/S0968-0004(03)00115-4  1
2003 Bateman A, Rawlings ND. The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. Trends in Biochemical Sciences. 28: 234-7. PMID 12765834 DOI: 10.1016/S0968-0004(03)00061-6  1
2003 Studholme DJ, Rawlings ND, Barrett AJ, Bateman A. A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised. Bmc Bioinformatics. 4: 17. PMID 12740029 DOI: 10.1186/1471-2105-4-17  1
2003 Coin L, Bateman A, Durbin R. Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proceedings of the National Academy of Sciences of the United States of America. 100: 4516-20. PMID 12668763 DOI: 10.1073/Pnas.0737502100  1
2003 Yeats C, Bentley S, Bateman A. New knowledge from old: in silico discovery of novel protein domains in Streptomyces coelicolor. Bmc Microbiology. 3: 3. PMID 12625841 DOI: 10.1186/1471-2180-3-3  1
2003 Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/Nar/Gkg006  1
2003 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046  1
2002 Mifsud W, Bateman A. Membrane-bound progesterone receptors contain a cytochrome b5-like ligand-binding domain. Genome Biology. 3: RESEARCH0068. PMID 12537557 DOI: 10.1186/Gb-2002-3-12-Research0068  0.01
2002 Howe K, Bateman A, Durbin R. QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics (Oxford, England). 18: 1546-7. PMID 12424131 DOI: 10.1093/Bioinformatics/18.11.1546  1
2002 Bateman A, Haft DH. HMM-based databases in InterPro. Briefings in Bioinformatics. 3: 236-45. PMID 12230032 DOI: 10.1093/Bib/3.3.236  1
2002 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031 DOI: 10.1093/Bib/3.3.225  1
2002 Griffiths-Jones S, Bateman A. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics (Oxford, England). 18: 1243-9. PMID 12217916 DOI: 10.1093/Bioinformatics/18.9.1243  1
2002 Yeats C, Finn RD, Bateman A. The PASTA domain: a beta-lactam-binding domain. Trends in Biochemical Sciences. 27: 438. PMID 12217513 DOI: 10.1016/S0968-0004(02)02164-3  1
2002 Bateman A. The SGS3 protein involved in PTGS finds a family. Bmc Bioinformatics. 3: 21. PMID 12162795 DOI: 10.1186/1471-2105-3-21  0.01
2002 Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature. 417: 141-7. PMID 12000953 DOI: 10.1038/417141A  1
2002 De Camilli P, Chen H, Hyman J, Panepucci E, Bateman A, Brunger AT. The ENTH domain. Febs Letters. 513: 11-8. PMID 11911874 DOI: 10.1016/S0014-5793(01)03306-3  1
2002 Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314  1
2001 Murzin AG, Bateman A. CASP2 knowledge‐based approach to distant homology recognition and fold prediction in CASP4 Proteins. 45: 76-85. PMID 11835484 DOI: 10.1002/Prot.10037  1
2001 Birney E, Bateman A, Clamp ME, Hubbard TJ. Mining the draft human genome Nature. 409: 827-828. PMID 11236999 DOI: 10.1038/35057004  1
2001 Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research. 29: 37-40. PMID 11125043 DOI: 10.1093/Nar/29.1.37  1
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Bateman A, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627  1
2000 Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (Oxford, England). 16: 1145-50. PMID 11159333 DOI: 10.1093/Bioinformatics/16.12.1145  1
2000 Mahon P, Bateman A. The PA domain: a protease-associated domain. Protein Science. 9: 1930-1934. PMID 11106166 DOI: 10.1110/Ps.9.10.1930  0.01
2000 Bateman A, Birney E. Searching databases to find protein domain organization. Advances in Protein Chemistry. 54: 137-157. PMID 10829227 DOI: 10.1016/S0065-3233(00)54005-4  1
1999 Bateman A, Sandford R. The PLAT domain: a new piece in the PKD1 puzzle. Current Biology : Cb. 9: R588-90. PMID 10469604 DOI: 10.1016/S0960-9822(99)80380-7  1
1999 Bycroft M, Bateman A, Clarke J, Hamill SJ, Sandford R, Thomas RL, Chothia C. The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease. The Embo Journal. 18: 297-305. PMID 9889186 DOI: 10.1093/Emboj/18.2.297  1
1999 Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer ELL. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins Nucleic Acids Research. 27: 260-262. PMID 9847196 DOI: 10.1093/Nar/27.1.260  1
1998 Bateman A, Murzin AG, Teichmann SA. Structure and distribution of pentapeptide repeats in bacteria Protein Science. 7: 1477-1480. PMID 9655353 DOI: 10.1002/Pro.5560070625  1
1998 Sundaresan V, Roberts I, Bateman A, Bankier A, Sheppard M, Hobbs C, Xiong J, Minna J, Latif F, Lerman M, Rabbitts P. The DUTT1 gene, a novel NCAM family member is expressed in developing murine neural tissues and has an unusually broad pattern of expression. Molecular and Cellular Neurosciences. 11: 29-35. PMID 9608531 DOI: 10.1006/Mcne.1998.0672  1
1998 Sonnhammer ELL, Eddy SR, Birney E, Bateman A, Durbin R. Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic Acids Research. 26: 320-322. PMID 9399864 DOI: 10.1093/Nar/26.1.320  1
1997 Sandford R, Sgotto B, Aparicio S, Brenner S, Vaudin M, Wilson RK, Chissoe S, Pepin K, Bateman A, Chothia C, Hughes J, Harris P. Comparative analysis of the polycystic kidney disease 1 (PKD1) gene reveals an integral membrane glycoprotein with multiple evolutionary conserved domains Human Molecular Genetics. 6: 1483-1489. PMID 9285785 DOI: 10.1093/Hmg/6.9.1483  1
1997 Bateman A, Eddy SR, Mesyanzhinov VV. A member of the immunoglobulin superfamily in bacteriophage T4 Virus Genes. 14: 163-165. PMID 9237357 DOI: 10.1023/A:1007977503658  1
1997 Bateman A. The structure of a domain common to archaebacteria and the homocystinuria disease protein. Trends in Biochemical Sciences. 22: 12-13. PMID 9020585 DOI: 10.1016/S0968-0004(96)30046-7  0.01
1997 Murzin AG, Bateman A. Distant homology recognition using structural classification of proteins Proteins. 29: 105-112. DOI: 10.1002/(Sici)1097-0134(1997)1+<105::Aid-Prot14>3.0.Co;2-S  1
1996 Bateman A, Chothia C. Fibronectin type III domains in yeast detected by a hidden Markov model [2] Current Biology. 6: 1544-1547. PMID 8994808 DOI: 10.1016/S0960-9822(02)70765-3  1
1996 Bateman A, Eddy SR, Chothia C. Members of the immunoglobulin superfamily in bacteria Protein Science. 5: 1939-1941. PMID 8880921 DOI: 10.1002/Pro.5560050923  1
1996 Bateman A, Jouet M, MacFarlane J, Du JS, Kenwrick S, Chothia C. Outline Structure Of The Human L1 Cell Adhesion Molecule And The Sites Where Mutations Cause Neurological Disorders The Embo Journal. 15: 6050-6059. DOI: 10.1002/J.1460-2075.1996.Tb00993.X  1
1995 Bateman A, Chothia C. Outline structures for the extracellular domains of the fibroblast growth factor receptors Nature Structural Biology. 2: 1068-1074. PMID 8846218 DOI: 10.1038/Nsb1295-1068  1
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