| Year |
Citation |
Score |
| 2024 |
Sarwal V, Lee S, Yang J, Sankararaman S, Chaisson M, Eskin E, Mangul S. VISTA: an integrated framework for structural variant discovery. Briefings in Bioinformatics. 25. PMID 39297879 DOI: 10.1093/bib/bbae462 |
0.346 |
|
| 2022 |
Taraszka K, Zaitlen N, Eskin E. Leveraging pleiotropy for joint analysis of genome-wide association studies with per trait interpretations. Plos Genetics. 18: e1010447. PMID 36342933 DOI: 10.1371/journal.pgen.1010447 |
0.656 |
|
| 2022 |
Zou J, Zhou J, Faller S, Brown RP, Sankararaman SS, Eskin E. Accurate modeling of replication rates in genome-wide association studies by accounting for Winner's Curse and study-specific heterogeneity. G3 (Bethesda, Md.). PMID 36250793 DOI: 10.1093/g3journal/jkac261 |
0.329 |
|
| 2021 |
LaPierre N, Taraszka K, Huang H, He R, Hormozdiari F, Eskin E. Identifying causal variants by fine mapping across multiple studies. Plos Genetics. 17: e1009733. PMID 34543273 DOI: 10.1371/journal.pgen.1009733 |
0.381 |
|
| 2021 |
Hormozdiari F, Jung J, Eskin E, J Joo JW. MARS: leveraging allelic heterogeneity to increase power of association testing. Genome Biology. 22: 128. PMID 33931127 DOI: 10.1186/s13059-021-02353-8 |
0.351 |
|
| 2020 |
Lee CH, Shi H, Pasaniuc B, Eskin E, Han B. PLEIO: a method to map and interpret pleiotropic loci with GWAS summary statistics. American Journal of Human Genetics. PMID 33352115 DOI: 10.1016/j.ajhg.2020.11.017 |
0.638 |
|
| 2020 |
Bein K, Ganguly K, Martin TM, Concel VJ, Brant KA, Di YP, Upadhyay S, Fabisiak JP, Vuga LJ, Kaminski N, Kostem E, Eskin E, Prows DR, Jang AS, Leikauf GD. Genetic Determinants of Ammonia-Induced Acute Lung Injury in Mice. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 33050709 DOI: 10.1152/ajplung.00276.2020 |
0.794 |
|
| 2020 |
Oliva M, Muñoz-Aguirre M, Kim-Hellmuth S, Wucher V, Gewirtz ADH, Cotter DJ, Parsana P, Kasela S, Balliu B, Viñuela A, Castel SE, Mohammadi P, Aguet F, Zou Y, Khramtsova EA, ... ... Eskin E, et al. The impact of sex on gene expression across human tissues. Science (New York, N.Y.). 369. PMID 32913072 DOI: 10.1126/Science.Aba3066 |
0.399 |
|
| 2020 |
LaPierre N, Alser M, Eskin E, Koslicki D, Mangul S. Metalign: efficient alignment-based metagenomic profiling via containment min hash. Genome Biology. 21: 242. PMID 32912225 DOI: 10.1186/S13059-020-02159-0 |
0.333 |
|
| 2020 |
Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, ... ... Eskin E, et al. Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing. Nature Communications. 11: 4499. PMID 32887888 DOI: 10.1038/S41467-020-18509-2 |
0.554 |
|
| 2020 |
Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, ... ... Eskin E, et al. Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing. Nature Communications. 11: 3126. PMID 32561710 DOI: 10.1038/S41467-020-16857-7 |
0.578 |
|
| 2020 |
Han Y, Jia Q, Jahani PS, Hurrell BP, Pan C, Huang P, Gukasyan J, Woodward NC, Eskin E, Gilliland FD, Akbari O, Hartiala JA, Allayee H. Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma. Nature Communications. 11: 1776. PMID 32296059 DOI: 10.1038/S41467-020-15649-3 |
0.344 |
|
| 2020 |
Loeffler C, Karlsberg A, Martin LS, Eskin E, Koslicki D, Mangul S. Improving the usability and comprehensiveness of microbial databases. Bmc Biology. 18: 37. PMID 32264902 DOI: 10.1186/S12915-020-0756-Z |
0.329 |
|
| 2020 |
Wu Y, Eskin E, Sankararaman S. A Unifying Framework for Imputing Summary Statistics in Genome-Wide Association Studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32053016 DOI: 10.1089/Cmb.2019.0449 |
0.429 |
|
| 2019 |
Maazi H, Hartiala JA, Suzuki Y, Crow AL, Shafiei Jahani P, Lam J, Patel N, Rigas D, Han Y, Huang P, Eskin E, Lusis AJ, Gilliland FD, Akbari O, Allayee H. A GWAS approach identifies Dapp1 as a determinant of air pollution-induced airway hyperreactivity. Plos Genetics. 15: e1008528. PMID 31869344 DOI: 10.1371/Journal.Pgen.1008528 |
0.366 |
|
| 2019 |
Zou J, Hormozdiari F, Jew B, Castel SE, Lappalainen T, Ernst J, Sul JH, Eskin E. Leveraging allelic imbalance to refine fine-mapping for eQTL studies. Plos Genetics. 15: e1008481. PMID 31834882 DOI: 10.1371/Journal.Pgen.1008481 |
0.747 |
|
| 2019 |
Lee C, Kang EY, Gandal MJ, Eskin E, Geschwind DH. Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage. Nature Neuroscience. 22: 1521-1532. PMID 31455884 DOI: 10.1038/S41593-019-0461-9 |
0.621 |
|
| 2019 |
Yao DW, Balanis NG, Eskin E, Graeber TG. A linear mixed model approach to gene expression-tumor aneuploidy association studies. Scientific Reports. 9: 11944. PMID 31420589 DOI: 10.1038/S41598-019-48302-1 |
0.341 |
|
| 2019 |
Rahmani E, Schweiger R, Rhead B, Criswell LA, Barcellos LF, Eskin E, Rosset S, Sankararaman S, Halperin E. Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology. Nature Communications. 10: 3417. PMID 31366909 DOI: 10.1038/S41467-019-11052-9 |
0.306 |
|
| 2019 |
Mangul S, Martin LS, Hill BL, Lam AK, Distler MG, Zelikovsky A, Eskin E, Flint J. Systematic benchmarking of omics computational tools. Nature Communications. 10: 1393. PMID 30918265 DOI: 10.1038/S41467-019-09406-4 |
0.305 |
|
| 2018 |
Sul JH, Martin LS, Eskin E. Population structure in genetic studies: Confounding factors and mixed models. Plos Genetics. 14: e1007309. PMID 30589851 DOI: 10.1371/Journal.Pgen.1007309 |
0.697 |
|
| 2018 |
Duong D, Ahmad WU, Eskin E, Chang KW, Li JJ. Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30383443 DOI: 10.1089/Cmb.2018.0093 |
0.302 |
|
| 2018 |
Wu Y, Hormozdiari F, Joo JWJ, Eskin E. Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30272994 DOI: 10.1089/cmb.2018.0139 |
0.412 |
|
| 2018 |
Gamazon ER, Segrè AV, van de Bunt M, Wen X, Xi HS, Hormozdiari F, Ongen H, Konkashbaev A, Derks EM, Aguet F, Quan J, Nicolae DL, Eskin E, Kellis M, et al. Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation. Nature Genetics. PMID 29955180 DOI: 10.1038/S41588-018-0154-4 |
0.463 |
|
| 2018 |
Gai L, Eskin E. Finding associated variants in genome-wide association studies on multiple traits. Bioinformatics (Oxford, England). 34: i467-i474. PMID 29949991 DOI: 10.1093/bioinformatics/bty249 |
0.407 |
|
| 2018 |
Hormozdiari F, Gazal S, van de Geijn B, Finucane HK, Ju CJ, Loh PR, Schoech A, Reshef Y, Liu X, O'Connor L, Gusev A, Eskin E, Price AL. Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits. Nature Genetics. PMID 29942083 DOI: 10.1038/S41588-018-0148-2 |
0.46 |
|
| 2018 |
Kennedy EM, Goehring GN, Nichols MH, Robins C, Mehta D, Klengel T, Eskin E, Smith AK, Conneely KN. An integrated -omics analysis of the epigenetic landscape of gene expression in human blood cells. Bmc Genomics. 19: 476. PMID 29914364 DOI: 10.1186/S12864-018-4842-3 |
0.316 |
|
| 2018 |
Kang EY, Lee CH, Furlotte NA, Joo JWJ, Kostem E, Zaitlen N, Eskin E, Han B. An Association Mapping Framework To Account for Potential Sex Difference in Genetic Architectures. Genetics. PMID 29752291 DOI: 10.1534/Genetics.117.300501 |
0.808 |
|
| 2018 |
Mangul S, Yang HT, Strauli N, Gruhl F, Porath HT, Hsieh K, Chen L, Daley T, Christenson S, Wesolowska-Andersen A, Spreafico R, Rios C, Eng C, Smith AD, Hernandez RD, ... ... Eskin E, et al. ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues. Genome Biology. 19: 36. PMID 29548336 DOI: 10.1186/S13059-018-1403-7 |
0.564 |
|
| 2018 |
Marschall T, Marz M, Abeel T, Dijkstra L, Dutilh BE, Ghaffaari A, Kersey P, Kloosterman WP, Makinen V, Novak AM, Paten B, Porubsky D, Rivals E, Alkan C, Baaijens JA, ... ... Eskin E, et al. Computational pan-genomics: status, promises and challenges. Briefings in Bioinformatics. 19: 118-135. PMID 27769991 DOI: 10.1093/Bib/Bbw089 |
0.387 |
|
| 2017 |
Park DS, Eskin I, Kang EY, Gamazon ER, Eng C, Gignoux CR, Galanter JM, Burchard E, Ye CJ, Aschard H, Eskin E, Halperin E, Zaitlen N. An ancestry-based approach for detecting interactions. Genetic Epidemiology. PMID 29114909 DOI: 10.1002/Gepi.22087 |
0.771 |
|
| 2017 |
Jasinska AJ, Zelaya I, Service SK, Peterson CB, Cantor RM, Choi OW, DeYoung J, Eskin E, Fairbanks LA, Fears S, Furterer AE, Huang YS, Ramensky V, Schmitt CA, Svardal H, et al. Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate. Nature Genetics. PMID 29083405 DOI: 10.1038/Ng.3959 |
0.446 |
|
| 2017 |
Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, ... ... Eskin E, et al. Loci associated with skin pigmentation identified in African populations. Science (New York, N.Y.). PMID 29025994 DOI: 10.1126/Science.Aan8433 |
0.413 |
|
| 2017 |
Ritchie MD, Davis JR, Aschard H, Battle A, Conti D, Du M, Eskin E, Fallin MD, Hsu L, Kraft P, Moore JH, Pierce BL, Bien SA, Thomas DC, Wei P, et al. Incorporation of Biological Knowledge Into the Study of Gene-Environment Interactions. American Journal of Epidemiology. 186: 771-777. PMID 28978191 DOI: 10.1093/Aje/Kwx229 |
0.397 |
|
| 2017 |
Lee CH, Eskin E, Han B. Increasing the power of meta-analysis of genome-wide association studies to detect heterogeneous effects. Bioinformatics (Oxford, England). 33: i379-i388. PMID 28881976 DOI: 10.1093/Bioinformatics/Btx242 |
0.641 |
|
| 2017 |
Duong D, Gai L, Snir S, Kang EY, Han B, Sul JH, Eskin E. Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes. Bioinformatics (Oxford, England). 33: i67-i74. PMID 28881962 DOI: 10.1093/Bioinformatics/Btx227 |
0.816 |
|
| 2017 |
Hormozdiari F, Zhu A, Kichaev G, Ju CJ, Segrè AV, Joo JWJ, Won H, Sankararaman S, Pasaniuc B, Shifman S, Eskin E. Widespread Allelic Heterogeneity in Complex Traits. American Journal of Human Genetics. 100: 789-802. PMID 28475861 DOI: 10.1016/J.Ajhg.2017.04.005 |
0.484 |
|
| 2017 |
He D, Wang Z, Parida L, Eskin E. IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28368828 DOI: 10.1109/Tcbb.2017.2688439 |
0.477 |
|
| 2017 |
Mangul S, Yang HT, Hormozdiari F, Dainis A, Tseng E, Ashley EA, Zelikovsky A, Eskin E. HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. Ieee Transactions On Nanobioscience. PMID 28328508 DOI: 10.1109/Tnb.2017.2675981 |
0.337 |
|
| 2017 |
Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation. Nature Methods. 14: 218-219. PMID 28245214 DOI: 10.1038/Nmeth.4190 |
0.526 |
|
| 2017 |
Bilow M, Crespo F, Pan Z, Eskin E, Eyheramendy S. Simultaneous Modeling of Disease Status and Clinical Phenotypes to Increase Power in GWAS. Genetics. PMID 28132020 DOI: 10.1534/Genetics.116.198473 |
0.448 |
|
| 2017 |
Duong D, Gai L, Snir S, Kang EY, Han B, Sul JH, Eskin E. Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to find eQTLs and eGenes F1000research. 6. DOI: 10.7490/F1000Research.1114779.1 |
0.732 |
|
| 2016 |
Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27901586 DOI: 10.1089/Cmb.2016.0146 |
0.347 |
|
| 2016 |
Hormozdiari F, van de Bunt M, Segrè AV, Li X, Joo JW, Bilow M, Sul JH, Sankararaman S, Pasaniuc B, Eskin E. Colocalization of GWAS and eQTL Signals Detects Target Genes. American Journal of Human Genetics. PMID 27866706 DOI: 10.1016/J.Ajhg.2016.10.003 |
0.718 |
|
| 2016 |
Joo JW, Kang EY, Org E, Furlotte N, Parks B, Hormozdiari F, Lusis AJ, Eskin E. Efficient and Accurate Multiple-Phenotype Regression Method for High Dimensional Data Considering Population Structure. Genetics. PMID 27770036 DOI: 10.1534/Genetics.116.189712 |
0.693 |
|
| 2016 |
Kang EY, Martin L, Mangul S, Isvilanonda W, Zou J, Ben-David E, Han B, Lusis AJ, Shifman S, Eskin E. Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. Genetics. PMID 27765809 DOI: 10.1534/Genetics.115.177246 |
0.785 |
|
| 2016 |
Won H, de la Torre-Ubieta L, Stein JL, Parikshak NN, Huang J, Opland CK, Gandal MJ, Sutton GJ, Hormozdiari F, Lu D, Lee C, Eskin E, Voineagu I, Ernst J, Geschwind DH. Chromosome conformation elucidates regulatory relationships in developing human brain. Nature. PMID 27760116 DOI: 10.1038/Nature19847 |
0.357 |
|
| 2016 |
Kichaev G, Roytman M, Johnson R, Eskin E, Lindström S, Kraft P, Pasaniuc B. Improved methods for multi-trait fine mapping of pleiotropic risk loci. Bioinformatics (Oxford, England). PMID 27663501 DOI: 10.1093/Bioinformatics/Btw615 |
0.495 |
|
| 2016 |
Main BJ, Lee Y, Ferguson HM, Kreppel KS, Kihonda A, Govella NJ, Collier TC, Cornel AJ, Eskin E, Kang EY, Nieman CC, Weakley AM, Lanzaro GC. The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis. Plos Genetics. 12: e1006303. PMID 27631375 DOI: 10.1371/Journal.Pgen.1006303 |
0.646 |
|
| 2016 |
Hasin-Brumshtein Y, Khan AH, Hormozdiari F, Pan C, Parks BW, Petyuk VA, Piehowski PD, Bruemmer A, Pellegrini M, Xiao X, Eskin E, Smith RD, Lusis AJ, Smith DJ. Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes. Elife. 5. PMID 27623010 DOI: 10.7554/Elife.15614 |
0.461 |
|
| 2016 |
Lavinsky J, Ge M, Crow AL, Pan C, Wang J, Dermanaki PS, Myint A, Eskin E, Allayee H, Lusis AJ, Friedman RA. The Genetic Architecture of Noise-induced Hearing Loss: Evidence for a Gene-by-Environment Interaction. G3 (Bethesda, Md.). PMID 27520957 DOI: 10.1534/G3.116.032516 |
0.419 |
|
| 2016 |
Duong D, Zou J, Hormozdiari F, Sul JH, Ernst J, Han B, Eskin E. Using genomic annotations increases statistical power to detect eGenes. Bioinformatics (Oxford, England). 32: i156-i163. PMID 27307612 DOI: 10.1093/Bioinformatics/Btw272 |
0.776 |
|
| 2016 |
Hormozdiari F, Kang EY, Bilow M, Ben-David E, Vulpe C, McLachlan S, Lusis AJ, Han B, Eskin E. Imputing Phenotypes for Genome-wide Association Studies. American Journal of Human Genetics. PMID 27292110 DOI: 10.1016/J.Ajhg.2016.04.013 |
0.773 |
|
| 2016 |
Schweiger R, Kaufman S, Laaksonen R, Kleber ME, März W, Eskin E, Rosset S, Halperin E. Fast and Accurate Construction of Confidence Intervals for Heritability. American Journal of Human Genetics. 98: 1181-92. PMID 27259052 DOI: 10.1016/J.Ajhg.2016.04.016 |
0.341 |
|
| 2016 |
Kang EY, Park Y, Li X, Segrè AV, Han B, Eskin E. ForestPMPlot: A Flexible Tool for Visualizing Heterogeneity between Studies in Meta-analysis. G3 (Bethesda, Md.). PMID 27194809 DOI: 10.1534/G3.116.029439 |
0.73 |
|
| 2016 |
Peterson CB, Service SK, Jasinska AJ, Gao F, Zelaya I, Teshiba TM, Bearden CE, Cantor RM, Reus VI, Macaya G, López-Jaramillo C, Bogomolov M, Benjamini Y, Eskin E, Coppola G, et al. Characterization of Expression Quantitative Trait Loci in Pedigrees from Colombia and Costa Rica Ascertained for Bipolar Disorder. Plos Genetics. 12: e1006046. PMID 27176483 DOI: 10.1371/Journal.Pgen.1006046 |
0.497 |
|
| 2016 |
Lusis AJ, Seldin M, Allayee H, Bennett BJ, Civelek M, Davis RC, Eskin E, Farber C, Hui ST, Mehrabian M, Norheim F, Pan C, Parks B, Rau C, Smith DJ, et al. The Hybrid Mouse Diversity Panel: A Resource for Systems Genetics Analyses of Metabolic and Cardiovascular Traits. Journal of Lipid Research. PMID 27099397 DOI: 10.1194/Jlr.R066944 |
0.461 |
|
| 2016 |
Joo JW, Hormozdiari F, Han B, Eskin E. Multiple testing correction in linear mixed models. Genome Biology. 17: 62. PMID 27039378 DOI: 10.1186/S13059-016-0903-6 |
0.614 |
|
| 2016 |
Rahmani E, Zaitlen N, Baran Y, Eng C, Hu D, Galanter J, Oh S, Burchard EG, Eskin E, Zou J, Halperin E. Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies. Nature Methods. PMID 27018579 DOI: 10.1038/Nmeth.3809 |
0.586 |
|
| 2016 |
Sul JH, Bilow M, Yang WY, Kostem E, Furlotte N, He D, Eskin E. Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models. Plos Genetics. 12: e1005849. PMID 26943367 DOI: 10.1371/Journal.Pgen.1005849 |
0.813 |
|
| 2016 |
Han B, Duong D, Sul JH, de Bakker PI, Eskin E, Raychaudhuri S. A general framework for meta-analyzing dependent studies with overlapping subjects in association mapping. Human Molecular Genetics. PMID 26908615 DOI: 10.1093/Hmg/Ddw049 |
0.778 |
|
| 2016 |
Hasin-Brumshtein Y, Khan AH, Hormozdiari F, Pan C, Parks BW, Petyuk VA, Piehowski PD, Brümmer A, Pellegrini M, Xiao X, Eskin E, Smith RD, Lusis AJ, Smith DJ. Author response: Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes Elife. DOI: 10.7554/Elife.15614.024 |
0.301 |
|
| 2015 |
Bennett BJ, Davis RC, Civelek M, Orozco L, Wu J, Qi H, Pan C, Packard RR, Eskin E, Yan M, Kirchgessner T, Wang Z, Li X, Gregory JC, Hazen SL, et al. Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains. Plos Genetics. 11: e1005711. PMID 26694027 DOI: 10.1371/Journal.Pgen.1005711 |
0.446 |
|
| 2015 |
Crow AL, Ohmen J, Wang J, Lavinsky J, Hartiala J, Li Q, Li X, Salehide P, Eskin E, Pan C, Lusis AJ, Allayee H, Friedman RA. The Genetic Architecture of Hearing Impairment in Mice: Evidence for Frequency Specific Genetic Determinants. G3 (Bethesda, Md.). PMID 26342000 DOI: 10.1534/G3.115.021592 |
0.43 |
|
| 2015 |
Org E, Parks BW, Joo JW, Emert B, Schwartzman W, Kang EY, Mehrabian M, Pan C, Knight R, Gunsalus R, Drake TA, Eskin E, Lusis AJ. Genetic and environmental control of host-gut microbiota interactions. Genome Research. PMID 26260972 DOI: 10.1101/Gr.194118.115 |
0.652 |
|
| 2015 |
Rau CD, Parks B, Wang Y, Eskin E, Simecek P, Churchill GA, Lusis AJ. High Density Genotypes of Inbred Mouse Strains: Improved Power and Precision of Association Mapping. G3 (Bethesda, Md.). PMID 26224782 DOI: 10.1534/G3.115.020784 |
0.469 |
|
| 2015 |
Hormozdiari F, Kichaev G, Yang WY, Pasaniuc B, Eskin E. Identification of causal genes for complex traits. Bioinformatics (Oxford, England). 31: i206-i213. PMID 26072484 DOI: 10.1093/Bioinformatics/Btv240 |
0.649 |
|
| 2015 |
Zhou X, Crow AL, Hartiala J, Spindler TJ, Ghazalpour A, Barsky LW, Bennett BB, Parks BW, Eskin E, Jain R, Epstein JA, Lusis AJ, Adams GB, Allayee H. The Genetic Landscape of Hematopoietic Stem Cell Frequency in Mice. Stem Cell Reports. PMID 26050929 DOI: 10.1016/J.Stemcr.2015.05.008 |
0.413 |
|
| 2015 |
Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B. Accurate and fast multiple-testing correction in eQTL studies. American Journal of Human Genetics. 96: 857-68. PMID 26027500 DOI: 10.1016/J.Ajhg.2015.04.012 |
0.774 |
|
| 2015 |
Lavinsky J, Crow AL, Pan C, Wang J, Aaron KA, Ho MK, Li Q, Salehide P, Myint A, Monges-Hernadez M, Eskin E, Allayee H, Lusis AJ, Friedman RA. Genome-wide association study identifies nox3 as a critical gene for susceptibility to noise-induced hearing loss. Plos Genetics. 11: e1005094. PMID 25880434 DOI: 10.1371/Journal.Pgen.1005094 |
0.43 |
|
| 2015 |
Wang Z, Sul JH, Snir S, Lozano JA, Eskin E. Gene-Gene Interactions Detection Using a Two-stage Model. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 563-76. PMID 25871811 DOI: 10.1089/Cmb.2014.0163 |
0.7 |
|
| 2015 |
Furlotte NA, Eskin E. Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model. Genetics. 200: 59-68. PMID 25724382 DOI: 10.1534/Genetics.114.171447 |
0.762 |
|
| 2015 |
Luykx JJ, Bakker SC, Visser WF, Verhoeven-Duif N, Buizer-Voskamp JE, den Heijer JM, Boks MP, Sul JH, Eskin E, Ori AP, Cantor RM, Vorstman J, Strengman E, DeYoung J, Kappen TH, et al. Genome-wide association study of NMDA receptor coagonists in human cerebrospinal fluid and plasma. Molecular Psychiatry. PMID 25666758 DOI: 10.1038/Mp.2014.190 |
0.65 |
|
| 2015 |
Hormozdiari F, Eskin E. Memory efficient assembly of human genome. Journal of Bioinformatics and Computational Biology. 13: 1550008. PMID 25603998 DOI: 10.1142/S0219720015500080 |
0.388 |
|
| 2015 |
Yang WY, Hormozdiari F, Eskin E, Pasaniuc B. A spatial haplotype copying model with applications to genotype imputation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 451-62. PMID 25526526 DOI: 10.1089/Cmb.2014.0151 |
0.603 |
|
| 2015 |
Eskin E. Discovering genes involved in disease and the mystery of missing heritability Communications of the Acm. 58: 80-87. DOI: 10.1145/2817827 |
0.492 |
|
| 2015 |
Joo JWJ, Kang EY, Org E, Furlotte N, Parks B, Lusis AJ, Eskin E. Efficient and accurate multiple-phenotypes regression method for high dimensional data considering population structure Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9029: 136-153. DOI: 10.1007/978-3-319-16706-0_15 |
0.75 |
|
| 2014 |
He D, Eskin E. IPED2X: a robust pedigree reconstruction algorithm for complicated pedigrees. Journal of Bioinformatics and Computational Biology. 12: 1442007. PMID 25553812 DOI: 10.1142/S0219720014420074 |
0.463 |
|
| 2014 |
Yang WY, Platt A, Chiang CW, Eskin E, Novembre J, Pasaniuc B. Spatial localization of recent ancestors for admixed individuals. G3 (Bethesda, Md.). 4: 2505-18. PMID 25371484 DOI: 10.1534/G3.114.014274 |
0.606 |
|
| 2014 |
Kichaev G, Yang WY, Lindstrom S, Hormozdiari F, Eskin E, Price AL, Kraft P, Pasaniuc B. Integrating functional data to prioritize causal variants in statistical fine-mapping studies. Plos Genetics. 10: e1004722. PMID 25357204 DOI: 10.1371/Journal.Pgen.1004722 |
0.66 |
|
| 2014 |
Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E. Identifying causal variants at loci with multiple signals of association. Genetics. 198: 497-508. PMID 25104515 DOI: 10.1534/Genetics.114.167908 |
0.832 |
|
| 2014 |
Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Accurate viral population assembly from ultra-deep sequencing data. Bioinformatics (Oxford, England). 30: i329-37. PMID 24932001 DOI: 10.1093/Bioinformatics/Btu295 |
0.348 |
|
| 2014 |
Hormozdiari F, Joo JW, Wadia A, Guan F, Ostrosky R, Sahai A, Eskin E. Privacy preserving protocol for detecting genetic relatives using rare variants. Bioinformatics (Oxford, England). 30: i204-11. PMID 24931985 DOI: 10.1093/Bioinformatics/Btu294 |
0.461 |
|
| 2014 |
Hasin-Brumshtein Y, Hormozdiari F, Martin L, van Nas A, Eskin E, Lusis AJ, Drake TA. Allele-specific expression and eQTL analysis in mouse adipose tissue. Bmc Genomics. 15: 471. PMID 24927774 DOI: 10.1186/1471-2164-15-471 |
0.404 |
|
| 2014 |
Joo JW, Sul JH, Han B, Ye C, Eskin E. Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies. Genome Biology. 15: r61. PMID 24708878 DOI: 10.1186/Gb-2014-15-4-R61 |
0.8 |
|
| 2014 |
He D, Furlotte NA, Hormozdiari F, Joo JW, Wadia A, Ostrovsky R, Sahai A, Eskin E. Identifying genetic relatives without compromising privacy. Genome Research. 24: 664-72. PMID 24614977 DOI: 10.1101/Gr.153346.112 |
0.767 |
|
| 2014 |
Ohmen J, Kang EY, Li X, Joo JW, Hormozdiari F, Zheng QY, Davis RC, Lusis AJ, Eskin E, Friedman RA. Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis. Journal of the Association For Research in Otolaryngology : Jaro. 15: 335-52. PMID 24570207 DOI: 10.1007/S10162-014-0443-2 |
0.714 |
|
| 2014 |
Zhang K, Huentelman MJ, Rao F, Sun EI, Corneveaux JJ, Schork AJ, Wei Z, Waalen J, Miramontes-Gonzalez JP, Hightower CM, Maihofer AX, Mahata M, Pastinen T, Ehret GB, ... ... Eskin E, et al. Genetic implication of a novel thiamine transporter in human hypertension. Journal of the American College of Cardiology. 63: 1542-55. PMID 24509276 DOI: 10.1016/J.Jacc.2014.01.007 |
0.426 |
|
| 2014 |
Kang EY, Han B, Furlotte N, Joo JW, Shih D, Davis RC, Lusis AJ, Eskin E. Meta-analysis identifies gene-by-environment interactions as demonstrated in a study of 4,965 mice. Plos Genetics. 10: e1004022. PMID 24415945 DOI: 10.1371/Journal.Pgen.1004022 |
0.822 |
|
| 2014 |
Marsden CD, Lee Y, Kreppel K, Weakley A, Cornel A, Ferguson HM, Eskin E, Lanzaro GC. Diversity, differentiation, and linkage disequilibrium: prospects for association mapping in the malaria vector Anopheles arabiensis. G3 (Bethesda, Md.). 4: 121-31. PMID 24281424 DOI: 10.1534/G3.113.008326 |
0.474 |
|
| 2014 |
Han B, Kang EY, Raychaudhuri S, de Bakker PI, Eskin E. Fast pairwise IBD association testing in genome-wide association studies. Bioinformatics (Oxford, England). 30: 206-13. PMID 24158599 DOI: 10.1093/Bioinformatics/Btt609 |
0.778 |
|
| 2014 |
Luykx JJ, Bakker SC, Lentjes E, Neeleman M, Strengman E, Mentink L, DeYoung J, de Jong S, Sul JH, Eskin E, van Eijk K, van Setten J, Buizer-Voskamp JE, Cantor RM, Lu A, et al. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. Molecular Psychiatry. 19: 228-34. PMID 23319000 DOI: 10.1038/Mp.2012.183 |
0.692 |
|
| 2014 |
Hersch M, Peter B, Kang HM, Schüpfer F, Abriel H, Pedrazzini T, Eskin E, Beckmann JS, Bergmann S, Maurer F. Correction: Mapping genetic variants associated with beta-adrenergic responses in inbred mice (PLoS ONE) Plos One. 9. DOI: 10.1371/Annotation/16D5801B-2701-4Ec9-9D8E-278791A8A26A |
0.303 |
|
| 2014 |
He D, Wang Z, Parida L, Eskin E. IPED2: Inheritance path based pedigree reconstruction algorithm for complicated pedigrees Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 202-210. DOI: 10.1145/2649387.2649438 |
0.405 |
|
| 2014 |
Yang WY, Hormozdiari F, Eskin E, Pasaniuc B. A spatial-aware haplotype copying model with applications to genotype imputation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8394: 371-384. DOI: 10.1007/978-3-319-05269-4_30 |
0.462 |
|
| 2013 |
He D, Wang Z, Han B, Parida L, Eskin E. IPED: inheritance path-based pedigree reconstruction algorithm using genotype data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 780-91. PMID 24093229 DOI: 10.1089/Cmb.2013.0080 |
0.645 |
|
| 2013 |
Kostem E, Eskin E. Efficiently identifying significant associations in genome-wide association studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 817-30. PMID 24033261 DOI: 10.1089/Cmb.2013.0087 |
0.822 |
|
| 2013 |
Lagarrigue S, Martin L, Hormozdiari F, Roux PF, Pan C, van Nas A, Demeure O, Cantor R, Ghazalpour A, Eskin E, Lusis AJ. Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage. Genetics. 195: 1157-66. PMID 24026101 DOI: 10.1534/Genetics.113.153882 |
0.354 |
|
| 2013 |
Yang WY, Hormozdiari F, Wang Z, He D, Pasaniuc B, Eskin E. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinformatics (Oxford, England). 29: 2245-52. PMID 23825370 DOI: 10.1093/Bioinformatics/Btt386 |
0.68 |
|
| 2013 |
Sul JH, Han B, Ye C, Choi T, Eskin E. Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches. Plos Genetics. 9: e1003491. PMID 23785294 DOI: 10.1371/Journal.Pgen.1003491 |
0.784 |
|
| 2013 |
Navon O, Sul JH, Han B, Conde L, Bracci PM, Riby J, Skibola CF, Eskin E, Halperin E. Rare variant association testing under low-coverage sequencing. Genetics. 194: 769-79. PMID 23636738 DOI: 10.1534/Genetics.113.150169 |
0.754 |
|
| 2013 |
Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, ... Eskin E, et al. Functional genomic assessment of phosgene-induced acute lung injury in mice. American Journal of Respiratory Cell and Molecular Biology. 49: 368-83. PMID 23590305 DOI: 10.1165/Rcmb.2012-0337Oc |
0.814 |
|
| 2013 |
Kostem E, Eskin E. Improving the accuracy and efficiency of partitioning heritability into the contributions of genomic regions. American Journal of Human Genetics. 92: 558-64. PMID 23561845 DOI: 10.1016/J.Ajhg.2013.03.010 |
0.815 |
|
| 2013 |
Sul JH, Eskin E. Mixed models can correct for population structure for genomic regions under selection. Nature Reviews. Genetics. 14: 300. PMID 23438871 DOI: 10.1038/Nrg2813-C1 |
0.646 |
|
| 2013 |
Wang Z, Hormozdiari F, Yang WY, Halperin E, Eskin E. CNVeM: copy number variation detection using uncertainty of read mapping. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 224-36. PMID 23421794 DOI: 10.1089/Cmb.2012.0258 |
0.602 |
|
| 2013 |
Davis RC, van Nas A, Bennett B, Orozco L, Pan C, Rau CD, Eskin E, Lusis AJ. Genome-wide association mapping of blood cell traits in mice. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 105-18. PMID 23417284 DOI: 10.1007/S00335-013-9448-0 |
0.44 |
|
| 2013 |
Lagarrigue S, Hormozdiari F, Martin LJ, Lecerf F, Hasin Y, Rau C, Hagopian R, Xiao Y, Yan J, Drake TA, Ghazalpour A, Eskin E, Lusis AJ. Limited RNA editing in exons of mouse liver and adipose. Genetics. 193: 1107-15. PMID 23410828 DOI: 10.1534/Genetics.112.149054 |
0.304 |
|
| 2013 |
He D, Han B, Eskin E. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 80-92. PMID 23383995 DOI: 10.1089/Cmb.2012.0091 |
0.695 |
|
| 2013 |
Parrish N, Sudakov B, Eskin E. Genome reassembly with high-throughput sequencing data. Bmc Genomics. 14: S8. PMID 23368744 DOI: 10.1186/1471-2164-14-S1-S8 |
0.403 |
|
| 2013 |
Parks BW, Nam E, Org E, Kostem E, Norheim F, Hui ST, Pan C, Civelek M, Rau CD, Bennett BJ, Mehrabian M, Ursell LK, He A, Castellani LW, Zinker B, ... ... Eskin E, et al. Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. Cell Metabolism. 17: 141-52. PMID 23312289 DOI: 10.1016/J.Cmet.2012.12.007 |
0.776 |
|
| 2013 |
He D, Eskin E. Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data. Gene. 518: 2-6. PMID 23269365 DOI: 10.1016/J.Gene.2012.11.093 |
0.503 |
|
| 2013 |
Scharf JM, Yu D, Mathews CA, Neale BM, Stewart SE, Fagerness JA, Evans P, Gamazon E, Edlund CK, Service SK, Tikhomirov A, Osiecki L, Illmann C, Pluzhnikov A, Konkashbaev A, ... ... Eskin E, et al. Genome-wide association study of Tourette's syndrome. Molecular Psychiatry. 18: 721-8. PMID 22889924 DOI: 10.1038/Mp.2012.69 |
0.6 |
|
| 2013 |
He D, Eskin E. IPEDX: An exact algorithm for pedigree reconstruction using genotype data Proceedings - 2013 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2013. 517-520. DOI: 10.1109/BIBM.2013.6732549 |
0.386 |
|
| 2013 |
He D, Wang Z, Han B, Parida L, Eskin E. IPED: Inheritance path based pedigree reconstruction algorithm using genotype data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7821: 75-87. DOI: 10.1007/978-3-642-37195-0_7 |
0.613 |
|
| 2012 |
Miller MB, Basu S, Cunningham J, Eskin E, Malone SM, Oetting WS, Schork N, Sul JH, Iacono WG, McGue M. The Minnesota Center for Twin and Family Research genome-wide association study. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 15: 767-74. PMID 23363460 DOI: 10.1017/Thg.2012.62 |
0.666 |
|
| 2012 |
Calabrese G, Bennett BJ, Orozco L, Kang HM, Eskin E, Dombret C, De Backer O, Lusis AJ, Farber CR. Systems genetic analysis of osteoblast-lineage cells. Plos Genetics. 8: e1003150. PMID 23300464 DOI: 10.1371/Journal.Pgen.1003150 |
0.349 |
|
| 2012 |
Flint J, Eskin E. Genome-wide association studies in mice. Nature Reviews. Genetics. 13: 807-17. PMID 23044826 DOI: 10.1038/Nrg3335 |
0.44 |
|
| 2012 |
Ghazalpour A, Rau CD, Farber CR, Bennett BJ, Orozco LD, van Nas A, Pan C, Allayee H, Beaven SW, Civelek M, Davis RC, Drake TA, Friedman RA, Furlotte N, Hui ST, ... ... Eskin E, et al. Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 680-92. PMID 22892838 DOI: 10.1007/S00335-012-9411-5 |
0.8 |
|
| 2012 |
Hersch M, Peter B, Kang HM, Schüpfer F, Abriel H, Pedrazzini T, Eskin E, Beckmann JS, Bergmann S, Maurer F. Mapping genetic variants associated with beta-adrenergic responses in inbred mice. Plos One. 7: e41032. PMID 22859963 DOI: 10.1371/Journal.Pone.0041032 |
0.448 |
|
| 2012 |
Weiss JN, Karma A, MacLellan WR, Deng M, Rau CD, Rees CM, Wang J, Wisniewski N, Eskin E, Horvath S, Qu Z, Wang Y, Lusis AJ. "Good enough solutions" and the genetics of complex diseases. Circulation Research. 111: 493-504. PMID 22859671 DOI: 10.1161/Circresaha.112.269084 |
0.427 |
|
| 2012 |
Bennett BJ, Orozco L, Kostem E, Erbilgin A, Dallinga M, Neuhaus I, Guan B, Wang X, Eskin E, Lusis AJ. High-resolution association mapping of atherosclerosis loci in mice. Arteriosclerosis, Thrombosis, and Vascular Biology. 32: 1790-8. PMID 22723443 DOI: 10.1161/Atvbaha.112.253864 |
0.802 |
|
| 2012 |
Darnell G, Duong D, Han B, Eskin E. Incorporating prior information into association studies. Bioinformatics (Oxford, England). 28: i147-53. PMID 22689754 DOI: 10.1093/Bioinformatics/Bts235 |
0.647 |
|
| 2012 |
Friese RS, Ye C, Nievergelt CM, Schork AJ, Mahapatra NR, Rao F, Napolitan PS, Waalen J, Ehret GB, Munroe PB, Schmid-Schönbein GW, Eskin E, O'Connor DT. Integrated computational and experimental analysis of the neuroendocrine transcriptome in genetic hypertension identifies novel control points for the cardiometabolic syndrome. Circulation. Cardiovascular Genetics. 5: 430-40. PMID 22670052 DOI: 10.1161/Circgenetics.111.962415 |
0.552 |
|
| 2012 |
Listgarten J, Lippert C, Kadie CM, Davidson RI, Eskin E, Heckerman D. Improved linear mixed models for genome-wide association studies. Nature Methods. 9: 525-6. PMID 22669648 DOI: 10.1038/Nmeth.2037 |
0.388 |
|
| 2012 |
Yang WY, Novembre J, Eskin E, Halperin E. A model-based approach for analysis of spatial structure in genetic data Nature Genetics. 44: 725-731. PMID 22610118 DOI: 10.7490/F1000Research.1093100.1 |
0.61 |
|
| 2012 |
Furlotte NA, Eskin E, Eyheramendy S. Genome-wide association mapping with longitudinal data. Genetic Epidemiology. 36: 463-71. PMID 22581622 DOI: 10.1002/Gepi.21640 |
0.756 |
|
| 2012 |
Furlotte NA, Kang EY, Van Nas A, Farber CR, Lusis AJ, Eskin E. Increasing association mapping power and resolution in mouse genetic studies through the use of meta-analysis for structured populations. Genetics. 191: 959-67. PMID 22505625 DOI: 10.1534/Genetics.112.140277 |
0.808 |
|
| 2012 |
Han B, Eskin E. Interpreting meta-analyses of genome-wide association studies. Plos Genetics. 8: e1002555. PMID 22396665 DOI: 10.1371/Journal.Pgen.1002555 |
0.64 |
|
| 2011 |
Parrish N, Hormozdiari F, Eskin E. Assembly of non-unique insertion content using next-generation sequencing. Bmc Bioinformatics. 12: S3. PMID 21989261 DOI: 10.1186/1471-2105-12-S6-S3 |
0.326 |
|
| 2011 |
He D, Zaitlen N, Pasaniuc B, Eskin E, Halperin E. Genotyping common and rare variation using overlapping pool sequencing. Bmc Bioinformatics. 12: S2. PMID 21989232 DOI: 10.1186/1471-2105-12-S6-S2 |
0.686 |
|
| 2011 |
Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, Nellåker C, Whitley H, Cleak J, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 477: 289-94. PMID 21921910 DOI: 10.1038/Nature10413 |
0.742 |
|
| 2011 |
Sul JH, Han B, Eskin E. Increasing power of groupwise association test with likelihood ratio test. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1611-24. PMID 21919745 DOI: 10.1089/Cmb.2011.0161 |
0.777 |
|
| 2011 |
Ghazalpour A, Bennett B, Petyuk VA, Orozco L, Hagopian R, Mungrue IN, Farber CR, Sinsheimer J, Kang HM, Furlotte N, Park CC, Wen PZ, Brewer H, Weitz K, Camp DG, ... ... Eskin E, et al. Comparative analysis of proteome and transcriptome variation in mouse. Plos Genetics. 7: e1001393. PMID 21695224 DOI: 10.1371/Journal.Pgen.1001393 |
0.691 |
|
| 2011 |
Furlotte NA, Kang HM, Ye C, Eskin E. Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity. Bioinformatics (Oxford, England). 27: i288-94. PMID 21685083 DOI: 10.1093/bioinformatics/btr221 |
0.727 |
|
| 2011 |
Han B, Eskin E. Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies. American Journal of Human Genetics. 88: 586-98. PMID 21565292 DOI: 10.1016/J.Ajhg.2011.04.014 |
0.619 |
|
| 2011 |
Van Tyne D, Park DJ, Schaffner SF, Neafsey DE, Angelino E, Cortese JF, Barnes KG, Rosen DM, Lukens AK, Daniels RF, Milner DA, Johnson CA, Shlyakhter I, Grossman SR, Becker JS, ... ... Eskin E, et al. Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. Plos Genetics. 7: e1001383. PMID 21533027 DOI: 10.1371/Journal.Pgen.1001383 |
0.72 |
|
| 2011 |
He D, Hormozdiari F, Furlotte N, Eskin E. Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. Bioinformatics (Oxford, England). 27: 1513-20. PMID 21505028 DOI: 10.1093/Bioinformatics/Btr169 |
0.75 |
|
| 2011 |
Farber CR, Bennett BJ, Orozco L, Zou W, Lira A, Kostem E, Kang HM, Furlotte N, Berberyan A, Ghazalpour A, Suwanwela J, Drake TA, Eskin E, Wang QT, Teitelbaum SL, et al. Mouse genome-wide association and systems genetics identify Asxl2 as a regulator of bone mineral density and osteoclastogenesis. Plos Genetics. 7: e1002038. PMID 21490954 DOI: 10.1371/Journal.Pgen.1002038 |
0.8 |
|
| 2011 |
Kostem E, Lozano JA, Eskin E. Increasing power of genome-wide association studies by collecting additional single-nucleotide polymorphisms. Genetics. 188: 449-60. PMID 21467568 DOI: 10.1534/Genetics.111.128595 |
0.81 |
|
| 2011 |
Park CC, Gale GD, de Jong S, Ghazalpour A, Bennett BJ, Farber CR, Langfelder P, Lin A, Khan AH, Eskin E, Horvath S, Lusis AJ, Ophoff RA, Smith DJ. Gene networks associated with conditional fear in mice identified using a systems genetics approach. Bmc Systems Biology. 5: 43. PMID 21410935 DOI: 10.1186/1752-0509-5-43 |
0.419 |
|
| 2011 |
Sul JH, Han B, He D, Eskin E. An optimal weighted aggregated association test for identification of rare variants involved in common diseases. Genetics. 188: 181-8. PMID 21368279 DOI: 10.1534/Genetics.110.125070 |
0.789 |
|
| 2011 |
Han B, Hackel BM, Eskin E. Postassociation cleaning using linkage disequilibrium information. Genetic Epidemiology. 35: 1-10. PMID 21181893 DOI: 10.1002/Gepi.20544 |
0.646 |
|
| 2011 |
Kenny EE, Kim M, Gusev A, Lowe JK, Salit J, Smith JG, Kovvali S, Kang HM, Newton-Cheh C, Daly MJ, Stoffel M, Altshuler DM, Friedman JM, Eskin E, Breslow JL, et al. Increased power of mixed models facilitates association mapping of 10 loci for metabolic traits in an isolated population. Human Molecular Genetics. 20: 827-39. PMID 21118897 DOI: 10.1093/Hmg/Ddq510 |
0.497 |
|
| 2011 |
McLachlan S, Lee SM, Steele TM, Hawthorne PL, Zapala MA, Eskin E, Schork NJ, Anderson GJ, Vulpe CD. In silico QTL mapping of basal liver iron levels in inbred mouse strains. Physiological Genomics. 43: 136-47. PMID 21062905 DOI: 10.1152/Physiolgenomics.00025.2010 |
0.318 |
|
| 2011 |
He D, Kunwar P, Eskin E, Horton H, Gilbert P, Hertz T. Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 594-601. DOI: 10.1145/2147805.2147907 |
0.348 |
|
| 2010 |
He D, Furlotte N, Eskin E. Detection and reconstruction of tandemly organized de novo copy number variations. Bmc Bioinformatics. 11: S12. PMID 21172047 DOI: 10.1186/1471-2105-11-S11-S12 |
0.75 |
|
| 2010 |
Zaitlen N, Eskin E. Imputation aware meta-analysis of genome-wide association studies. Genetic Epidemiology. 34: 537-42. PMID 20717975 DOI: 10.1002/Gepi.20507 |
0.685 |
|
| 2010 |
Santana R, Mendiburu A, Zaitlen N, Eskin E, Lozano JA. Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms. Artificial Intelligence in Medicine. 50: 193-201. PMID 20650616 DOI: 10.1016/J.Artmed.2010.05.010 |
0.617 |
|
| 2010 |
He D, Choi A, Pipatsrisawat K, Darwiche A, Eskin E. Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics (Oxford, England). 26: i183-90. PMID 20529904 DOI: 10.1093/Bioinformatics/Btq215 |
0.515 |
|
| 2010 |
Kirby A, Kang HM, Wade CM, Cotsapas C, Kostem E, Han B, Furlotte N, Kang EY, Rivas M, Bogue MA, Frazer KA, Johnson FM, Beilharz EJ, Cox DR, Eskin E, et al. Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics. 185: 1081-95. PMID 20439770 DOI: 10.1534/Genetics.110.115014 |
0.807 |
|
| 2010 |
Kang HM, Zaitlen NA, Eskin E. EMINIM: an adaptive and memory-efficient algorithm for genotype imputation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 547-60. PMID 20377463 DOI: 10.1089/Cmb.2009.0199 |
0.689 |
|
| 2010 |
Kang EY, Ye C, Shpitser I, Eskin E. Detecting the presence and absence of causal relationships between expression of yeast genes with very few samples. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 533-46. PMID 20377462 DOI: 10.1089/Cmb.2009.0176 |
0.729 |
|
| 2010 |
Zhang K, Weder AB, Eskin E, O'Connor DT. Genome-wide case/control studies in hypertension: only the 'tip of the iceberg'. Journal of Hypertension. 28: 1115-23. PMID 20216088 DOI: 10.1097/Hjh.0B013E328337F6Bc |
0.428 |
|
| 2010 |
Kang HM, Sul JH, Service SK, Zaitlen NA, Kong SY, Freimer NB, Sabatti C, Eskin E. Variance component model to account for sample structure in genome-wide association studies. Nature Genetics. 42: 348-54. PMID 20208533 DOI: 10.1038/Ng.548 |
0.793 |
|
| 2010 |
Stein JL, Hua X, Morra JH, Lee S, Hibar DP, Ho AJ, Leow AD, Toga AW, Sul JH, Kang HM, Eskin E, Saykin AJ, Shen L, Foroud T, Pankratz N, et al. Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease. Neuroimage. 51: 542-54. PMID 20197096 DOI: 10.1016/J.Neuroimage.2010.02.068 |
0.673 |
|
| 2010 |
Bennett BJ, Farber CR, Orozco L, Kang HM, Ghazalpour A, Siemers N, Neubauer M, Neuhaus I, Yordanova R, Guan B, Truong A, Yang WP, He A, Kayne P, Gargalovic P, ... ... Eskin E, et al. A high-resolution association mapping panel for the dissection of complex traits in mice. Genome Research. 20: 281-90. PMID 20054062 DOI: 10.1101/Gr.099234.109 |
0.813 |
|
| 2010 |
He D, Eskin E. Effective algorithms for fusion gene detection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6293: 312-324. DOI: 10.1007/978-3-642-15294-8_26 |
0.407 |
|
| 2009 |
Yang IV, Wade CM, Kang HM, Alper S, Rutledge H, Lackford B, Eskin E, Daly MJ, Schwartz DA. Identification of novel genes that mediate innate immunity using inbred mice. Genetics. 183: 1535-44. PMID 19805818 DOI: 10.1534/Genetics.109.107540 |
0.339 |
|
| 2009 |
Rana BK, Wessel J, Mahboubi V, Rao F, Haeller J, Gayen JR, Eskin E, Valle AM, Das M, Mahata SK, Taupenot L, Stridsberg M, Talley TT, Ziegler MG, Smith DW, et al. Natural variation within the neuronal nicotinic acetylcholine receptor cluster on human chromosome 15q24: influence on heritable autonomic traits in twin pairs. The Journal of Pharmacology and Experimental Therapeutics. 331: 419-28. PMID 19671882 DOI: 10.1124/Jpet.109.157271 |
0.314 |
|
| 2009 |
Smith EN, Bloss CS, Badner JA, Barrett T, Belmonte PL, Berrettini W, Byerley W, Coryell W, Craig D, Edenberg HJ, Eskin E, Foroud T, Gershon E, Greenwood TA, Hipolito M, et al. Genome-wide association study of bipolar disorder in European American and African American individuals. Molecular Psychiatry. 14: 755-63. PMID 19488044 DOI: 10.1038/Mp.2009.43 |
0.629 |
|
| 2009 |
Han B, Kang HM, Eskin E. Rapid and accurate multiple testing correction and power estimation for millions of correlated markers. Plos Genetics. 5: e1000456. PMID 19381255 DOI: 10.1371/Journal.Pgen.1000456 |
0.631 |
|
| 2009 |
Zaitlen N, Kang HM, Eskin E. Linkage effects and analysis of finite sample errors in the HapMap. Human Heredity. 68: 73-86. PMID 19365134 DOI: 10.1159/000212500 |
0.657 |
|
| 2009 |
Ye C, Galbraith SJ, Liao JC, Eskin E. Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. Plos Computational Biology. 5: e1000311. PMID 19300475 DOI: 10.1371/Journal.Pcbi.1000311 |
0.582 |
|
| 2009 |
Kang HM, Zaitlen NA, Han B, Eskin E. An adaptive and memory efficient algorithm for genotype imputation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5541: 482-495. DOI: 10.1007/978-3-642-02008-7_34 |
0.642 |
|
| 2008 |
Kang HM, Ye C, Eskin E. Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots. Genetics. 180: 1909-25. PMID 18791227 DOI: 10.1534/Genetics.108.094201 |
0.636 |
|
| 2008 |
Han B, Kang HM, Seo MS, Zaitlen N, Eskin E. Efficient association study design via power-optimized tag SNP selection Annals of Human Genetics. 72: 834-847. PMID 18702637 DOI: 10.1111/J.1469-1809.2008.00469.X |
0.745 |
|
| 2008 |
Ghazalpour A, Doss S, Kang H, Farber C, Wen PZ, Brozell A, Castellanos R, Eskin E, Smith DJ, Drake TA, Lusis AJ. High-resolution mapping of gene expression using association in an outbred mouse stock. Plos Genetics. 4: e1000149. PMID 18688273 DOI: 10.1371/Journal.Pgen.1000149 |
0.468 |
|
| 2008 |
Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E. Efficient control of population structure in model organism association mapping. Genetics. 178: 1709-23. PMID 18385116 DOI: 10.1534/Genetics.107.080101 |
0.696 |
|
| 2008 |
Eskin E. Increasing power in association studies by using linkage disequilibrium structure and molecular function as prior information. Genome Research. 18: 653-60. PMID 18353808 DOI: 10.1101/Gr.072785.107 |
0.411 |
|
| 2008 |
Olshen AB, Gold B, Lohmueller KE, Struewing JP, Satagopan J, Stefanov SA, Eskin E, Kirchhoff T, Lautenberger JA, Klein RJ, Friedman E, Norton L, Ellis NA, Viale A, Lee CS, et al. Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping. Bmc Genetics. 9: 14. PMID 18251999 DOI: 10.1186/1471-2156-9-14 |
0.473 |
|
| 2008 |
Choi A, Zaitlen N, Han B, Pipatsrisawat K, Darwiche A, Eskin E. Efficient genome wide tagging by reduction to SAT Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5251: 135-147. DOI: 10.1007/978-3-540-87361-7_12 |
0.693 |
|
| 2007 |
Barrett TB, Emberton JE, Nievergelt CM, Liang SG, Hauger RL, Eskin E, Schork NJ, Kelsoe JR. Further evidence for association of GRK3 to bipolar disorder suggests a second disease mutation. Psychiatric Genetics. 17: 315-22. PMID 18075471 DOI: 10.1097/Ypg.0B013E3282Efeeb4 |
0.367 |
|
| 2007 |
Frazer KA, Eskin E, Kang HM, Bogue MA, Hinds DA, Beilharz EJ, Gupta RV, Montgomery J, Morenzoni MM, Nilsen GB, Pethiyagoda CL, Stuve LL, Johnson FM, Daly MJ, Wade CM, et al. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature. 448: 1050-3. PMID 17660834 DOI: 10.1038/Nature06067 |
0.409 |
|
| 2007 |
Rao F, Wen G, Gayen JR, Das M, Vaingankar SM, Rana BK, Mahata M, Kennedy BP, Salem RM, Stridsberg M, Abel K, Smith DW, Eskin E, Schork NJ, Hamilton BA, et al. Catecholamine release-inhibitory peptide catestatin (chromogranin A(352-372)): naturally occurring amino acid variant Gly364Ser causes profound changes in human autonomic activity and alters risk for hypertension. Circulation. 115: 2271-81. PMID 17438154 DOI: 10.1161/Circulationaha.106.628859 |
0.313 |
|
| 2007 |
Zaitlen N, Kang HM, Eskin E, Halperin E. Leveraging the HapMap correlation structure in association studies. American Journal of Human Genetics. 80: 683-91. PMID 17357074 DOI: 10.1086/513109 |
0.653 |
|
| 2007 |
Ye C, Eskin E. Discovering tightly regulated and differentially expressed gene sets in whole genome expression data. Bioinformatics (Oxford, England). 23: e84-90. PMID 17237110 DOI: 10.1093/Bioinformatics/Btl315 |
0.587 |
|
| 2007 |
O'Rourke S, Zaitlen N, Jojic N, Eskin E. Reconstructing the phylogeny of mobile elements Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 196-210. |
0.523 |
|
| 2007 |
Corona E, Raphael B, Eskin E. Identification of deletion polymorphisms from haplotypes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 354-365. |
0.341 |
|
| 2006 |
Eskin E, Sharan R, Halperin E. A note on phasing long genomic regions using local haplotype predictions. Journal of Bioinformatics and Computational Biology. 4: 639-47. PMID 16960967 DOI: 10.1142/S0219720006002272 |
0.351 |
|
| 2006 |
Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P. A comparison of phasing algorithms for trios and unrelated individuals. American Journal of Human Genetics. 78: 437-50. PMID 16465620 DOI: 10.1086/500808 |
0.38 |
|
| 2006 |
Riddle EL, Rana BK, Murthy KK, Rao F, Eskin E, O'Connor DT, Insel PA. Polymorphisms and haplotypes of the regulator of G protein signaling-2 gene in normotensives and hypertensives. Hypertension. 47: 415-20. PMID 16432041 DOI: 10.1161/01.Hyp.0000200714.81990.61 |
0.353 |
|
| 2006 |
Greenwood TA, Schork NJ, Eskin E, Kelsoe JR. Identification of additional variants within the human dopamine transporter gene provides further evidence for an association with bipolar disorder in two independent samples. Molecular Psychiatry. 11: 125-33, 115. PMID 16261167 DOI: 10.1038/Sj.Mp.4001764 |
0.349 |
|
| 2005 |
Zhang S, Haas B, Eskin E, Bafna V. Searching genomes for noncoding RNA using FastR. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 2: 366-79. PMID 17044173 DOI: 10.1109/Tcbb.2005.57 |
0.35 |
|
| 2005 |
Zaitlen NA, Kang HM, Feolo ML, Sherry ST, Halperin E, Eskin E. Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP. Genome Research. 15: 1594-600. PMID 16251470 DOI: 10.1101/Gr.4297805 |
0.654 |
|
| 2005 |
Hinds DA, Stuve LL, Nilsen GB, Halperin E, Eskin E, Ballinger DG, Frazer KA, Cox DR. Whole-genome patterns of common DNA variation in three human populations. Science (New York, N.Y.). 307: 1072-9. PMID 15718463 DOI: 10.1126/Science.1105436 |
0.428 |
|
| 2005 |
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, et al. Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology. 23: 137-44. PMID 15637633 DOI: 10.1038/Nbt1053 |
0.476 |
|
| 2005 |
Stolfo SJ, Apap F, Eskin E, Heller K, Hershkop S, Honig A, Svore K. A comparative evaluation of two algorithms for Windows Registry Anomaly Detection Journal of Computer Security. 13: 659-693. DOI: 10.3233/Jcs-2005-13403 |
0.768 |
|
| 2004 |
Price AL, Eskin E, Pevzner PA. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history. Genome Research. 14: 2245-52. PMID 15520288 DOI: 10.1101/Gr.2693004 |
0.396 |
|
| 2004 |
Halperin E, Eskin E. Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinformatics (Oxford, England). 20: 1842-9. PMID 14988101 DOI: 10.1093/Bioinformatics/Bth149 |
0.458 |
|
| 2003 |
Eskin E, Halperin E, Karp RM. Efficient reconstruction of haplotype structure via perfect phylogeny. Journal of Bioinformatics and Computational Biology. 1: 1-20. PMID 15290779 DOI: 10.1142/S0219720003000174 |
0.438 |
|
| 2002 |
Apap F, Honig A, Hershkop S, Eskin E, Stolfo S. Detecting malicious software by monitoring anomalous windows registry accesses Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2516: 36-53. DOI: 10.1007/3-540-36084-0_3 |
0.758 |
|
| 2002 |
Bhattacharyya M, Hershkop S, Eskin E. MET: An experimental system for Malicious Email Tracking Proceedings New Security Paradigms Workshop. 3-10. |
0.703 |
|
| 2001 |
Eskin E, Lee W, Stolfo SJ. Modeling system calls for intrusion detection with dynamic window sizes Proceedings - Darpa Information Survivability Conference and Exposition Ii, Discex 2001. 1: 165-175. DOI: 10.1109/DISCEX.2001.932213 |
0.556 |
|
| 2001 |
Lee W, Stolfo SJ, Chan PK, Eskin E, Fan W, Miller M, Hershkop S, Zhang J. Real time data mining-based intrusion detection Proceedings - Darpa Information Survivability Conference and Exposition Ii, Discex 2001. 1: 89-100. DOI: 10.1109/DISCEX.2001.932195 |
0.777 |
|
| 2001 |
Schultz MG, Eskin E, Zadok E, Stolfo SJ. Data mining methods for detection of new malicious executables Proceedings of the Ieee Computer Society Symposium On Research in Security and Privacy. 38-49. |
0.55 |
|
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