L. Lacey Knowles, Ph.D - Publications

Ecology and Evolutionary Biology University of Michigan, Ann Arbor, Ann Arbor, MI 
speciation, phylogeography, phylogenetics, population genetics

116 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Rolland J, Henao-Diaz LF, Doebeli M, Germain R, Harmon LJ, Knowles LL, Liow LH, Mank JE, Machac A, Otto SP, Pennell M, Salamin N, Silvestro D, Sugawara M, Uyeda J, et al. Conceptual and empirical bridges between micro- and macroevolution. Nature Ecology & Evolution. PMID 37429904 DOI: 10.1038/s41559-023-02116-7  0.348
2023 Fiorini CF, de Camargo Smidt E, Knowles LL, Leite Borba E. Hybridization boosters diversification in a Neotropical Bulbophyllum (Orchidaceae) group. Molecular Phylogenetics and Evolution. 186: 107858. PMID 37329930 DOI: 10.1016/j.ympev.2023.107858  0.344
2023 F Fiorini C, Leite Borba E, C Resende-Moreira L, Smidt EC, Knowles LL. Geographic isolation alone does not explain divergence of a group of orchid species across Brazil's campos rupestres sky-islands. Evolution; International Journal of Organic Evolution. PMID 36688535 DOI: 10.1093/evolut/qpad010  0.47
2022 Luna LW, Naka LN, Thom G, Knowles LL, Sawakuchi AO, Aleixo A, Ribas CC. Late Pleistocene landscape changes and habitat specialization as promoters of population genomic divergence in Amazonian floodplain birds. Molecular Ecology. PMID 36261866 DOI: 10.1111/mec.16741  0.417
2022 Auteri GG, Marchán-Rivadeneira MR, Olson DH, Knowles LL. Landscape connectivity among coastal giant salamander (Dicamptodon tenebrosus) populations shows no association with land use, fire frequency, or river drainage but exhibits genetic signatures of potential conservation concern. Plos One. 17: e0268882. PMID 35675274 DOI: 10.1371/journal.pone.0268882  0.328
2022 Ortego J, Knowles LL. Geographical isolation versus dispersal: Relictual alpine grasshoppers support a model of interglacial diversification with limited hybridization. Molecular Ecology. 31: 296-312. PMID 34651368 DOI: 10.1111/mec.16225  0.447
2021 Nazareno AG, Knowles LL. There Is No 'Rule of Thumb': Genomic Filter Settings for a Small Plant Population to Obtain Unbiased Gene Flow Estimates. Frontiers in Plant Science. 12: 677009. PMID 34721447 DOI: 10.3389/fpls.2021.677009  0.331
2021 do Amaral KB, Barragán-Barrera DC, Mesa-Gutiérrez RA, Farías-Curtidor N, Caballero Gaitán SJ, Méndez-Fernandez P, Santos MCO, Rinaldi C, Rinaldi R, Siciliano S, Martín V, Carrillo M, de Meirelles ACO, Franco-Trecu V, Fagundes NJR, ... ... Knowles LL, et al. Seascape genetics of the Atlantic spotted dolphin (Stenella frontalis) based on mitochondrial DNA. The Journal of Heredity. PMID 34453543 DOI: 10.1093/jhered/esab050  0.307
2021 Miralles A, Ducasse J, Brouillet S, Flouri T, Fujisawa T, Kapli P, Knowles LL, Kumari S, Stamatakis A, Sukumaran J, Lutteropp S, Vences M, Puillandre N. SPART: A versatile and standardized data exchange format for species partition information. Molecular Ecology Resources. PMID 34288531 DOI: 10.1111/1755-0998.13470  0.733
2021 Sukumaran J, Holder MT, Knowles LL. Incorporating the speciation process into species delimitation. Plos Computational Biology. 17: e1008924. PMID 33983918 DOI: 10.1371/journal.pcbi.1008924  0.811
2021 Nazareno AG, Knowles LL, Dick CW, Lohmann LG. By Animal, Water, or Wind: Can Dispersal Mode Predict Genetic Connectivity in Riverine Plant Species? Frontiers in Plant Science. 12: 626405. PMID 33643353 DOI: 10.3389/fpls.2021.626405  0.322
2021 Vanhove M, Pina-Martins F, Coelho AC, Branquinho C, Costa A, Batista D, Silva A, Sousa P, Henriques A, Marques I, Belkadi B, Knowles LL, Paulo OS. Using gradient Forest to predict climate response and adaptation in Cork oak. Journal of Evolutionary Biology. PMID 33484040 DOI: 10.1111/jeb.13765  0.355
2021 Wan T, Oaks JR, Jiang XL, Huang H, Knowles LL. Differences in Quaternary co-divergence reveals community-wide diversification in the mountains of southwest China varied among species. Proceedings. Biological Sciences. 288: 20202567. PMID 33402075 DOI: 10.1098/rspb.2020.2567  0.752
2021 Hodel RGJ, Massatti R, Bishop SGD, Knowles LL. Testing which axes of species differentiation underlie covariance of phylogeographic similarity among montane sedge species. Evolution; International Journal of Organic Evolution. PMID 33386752 DOI: 10.1111/evo.14159  0.465
2020 Prado JRD, Knowles LL, Percequillo AR. New species boundaries and the diversification history of marsh rat taxa clarify historical connections among ecologically and geographically distinct wetlands of South America. Molecular Phylogenetics and Evolution. 106992. PMID 33096231 DOI: 10.1016/j.ympev.2020.106992  0.46
2020 Barreto SB, Knowles LL, Affonso PRAM, Batalha-Filho H. Riverscape properties contribute to the origin and structure of a hybrid zone in a Neotropical freshwater fish. Journal of Evolutionary Biology. PMID 32862491 DOI: 10.1111/Jeb.13689  0.453
2020 Fischer G, Friedman NR, Huang JP, Narula N, Knowles LL, Fisher BL, Mikheyev AS, Economo EP. Socially Parasitic Ants Evolve a Mosaic of Host-Matching and Parasitic Morphological Traits. Current Biology : Cb. PMID 32707068 DOI: 10.1016/J.Cub.2020.06.078  0.36
2020 Ortego J, Knowles LL. Incorporating interspecific interactions into phylogeographic models: A case study with Californian oaks. Molecular Ecology. PMID 32657460 DOI: 10.1111/Mec.15548  0.463
2020 Auteri GG, Knowles LL. Decimated little brown bats show potential for adaptive change. Scientific Reports. 10: 3023. PMID 32080246 DOI: 10.1038/S41598-020-59797-4  0.407
2020 Becheler A, Knowles LL. Occupancy spectrum distribution: application for coalescence simulation with generic mergers. Bioinformatics (Oxford, England). PMID 32049321 DOI: 10.1093/Bioinformatics/Btaa090  0.313
2020 Thomaz AT, Knowles LL. Common barriers, but temporal dissonance: genomic tests suggest ecological and paleo-landscape sieves structure a coastal riverine fish community. Molecular Ecology. PMID 31958183 DOI: 10.1111/Mec.15357  0.512
2020 Huang J, Hill JVG, Ortego J, Knowles LL. Paraphyletic species no more – genomic data resolve a Pleistocene radiation and validate morphological species of the Melanoplus scudderi complex (Insecta: Orthoptera) Systematic Entomology. 45: 594-605. DOI: 10.1111/Syen.12415  0.462
2020 Massatti R, Knowles LL. The historical context of contemporary climatic adaptation: a case study in the climatically dynamic and environmentally complex southwestern United States Ecography. 43: 735-746. DOI: 10.1111/Ecog.04840  0.428
2019 Rubi TL, Knowles LL, Dantzer B. Museum epigenomics: characterizing cytosine methylation in historic museum specimens. Molecular Ecology Resources. PMID 31682062 DOI: 10.1111/1755-0998.13115  0.332
2019 Bemmels JB, Knowles LL, Dick CW. Genomic evidence of survival near ice sheet margins for some, but not all, North American trees. Proceedings of the National Academy of Sciences of the United States of America. PMID 30962371 DOI: 10.1073/Pnas.1901656116  0.516
2019 Bravo GA, Antonelli A, Bacon CD, Bartoszek K, Blom MPK, Huynh S, Jones G, Knowles LL, Lamichhaney S, Marcussen T, Morlon H, Nakhleh LK, Oxelman B, Pfeil B, Schliep A, et al. Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. Peerj. 7: e6399. PMID 30783571 DOI: 10.7717/Peerj.6399  0.435
2019 Prado JR, Percequillo AR, Thomaz AT, Knowles L. Similar but different: Revealing the relative roles of species‐traits versus biome properties structuring genetic variation in South American marsh rats Journal of Biogeography. 46: 770-783. DOI: 10.1111/Jbi.13529  0.317
2019 Resende‐Moreira LC, Knowles LL, Thomaz AT, Prado JR, Souto AP, Lemos‐Filho JP, Lovato MB. Evolving in isolation: Genetic tests reject recent connections of Amazonian savannas with the central Cerrado Journal of Biogeography. 46: 196-211. DOI: 10.1111/Jbi.13468  0.326
2019 Emel SL, Olson DH, Knowles LL, Storfer A. Comparative landscape genetics of two endemic torrent salamander species, Rhyacotriton kezeri and R. variegatus : implications for forest management and species conservation Conservation Genetics. 20: 801-815. DOI: 10.1007/S10592-019-01172-6  0.523
2018 Thomaz AT, Carvalho TP, Malabarba LR, Knowles LL. Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): Insights about diversification among sympatric species pools. Molecular Phylogenetics and Evolution. 132: 265-274. PMID 30528083 DOI: 10.1016/J.Ympev.2018.12.008  0.537
2018 Hodel RGJ, Knowles LL, McDaniel SF, Payton AC, Dunaway JF, Soltis PS, Soltis DE. Terrestrial species adapted to sea dispersal: differences in propagule dispersal of two Caribbean mangroves. Molecular Ecology. PMID 30308703 DOI: 10.1111/Mec.14894  0.529
2018 Li J, Huang JP, Sukumaran J, Knowles LL. Microevolutionary processes impact macroevolutionary patterns. Bmc Evolutionary Biology. 18: 123. PMID 30097006 DOI: 10.1186/S12862-018-1236-8  0.727
2018 Knowles LL, Huang H, Sukumaran J, Smith SA. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories. American Journal of Botany. PMID 29710372 DOI: 10.1002/Ajb2.1064  0.785
2018 Sukumaran J, Knowles LL. Trait-Dependent Biogeography: (Re)Integrating Biology into Probabilistic Historical Biogeographical Models. Trends in Ecology & Evolution. PMID 29685579 DOI: 10.1016/J.Tree.2018.03.010  0.728
2018 Sturaro MJ, Rodrigues MT, Colli GR, Knowles LL, Avila-Pires TC. Integrative taxonomy of the lizards Cercosaura ocellata species complex (Reptilia: Gymnophthalmidae) Zoologischer Anzeiger. 275: 37-65. DOI: 10.1016/J.Jcz.2018.04.004  0.5
2017 Papadopoulou A, Knowles LL. Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification. Evolution; International Journal of Organic Evolution. PMID 29076151 DOI: 10.1111/Evo.13384  0.456
2017 He Q, Prado JR, Knowles LL. Inferring the geographic origin of a range expansion: latitudinal and longitudinal coordinates inferred from genomic data in an ABC framework with the program x-origin. Molecular Ecology. PMID 29044712 DOI: 10.1111/mec.14380  0.326
2017 Thomaz AT, Malabarba LR, Knowles LL. Genomic signatures of paleodrainages in a freshwater fish along the southeastern coast of Brazil: genetic structure reflects past riverine properties. Heredity. 119: 287-294. PMID 28767104 DOI: 10.1038/Hdy.2017.46  0.454
2017 Sukumaran J, Knowles LL. Multispecies coalescent delimits structure, not species. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137871 DOI: 10.1073/Pnas.1607921114  0.76
2017 Knowles LL, Massatti R. Distributional shifts– not geographic isolation – as a probable driver of montane species divergence Ecography. 40: 1475-1485. DOI: 10.1111/Ecog.02893  0.502
2016 Muñoz-Ramírez CP, Bitton PP, Doucet SM, Knowles LL. Mimics here and there, but not everywhere: Müllerian mimicry in Ceroglossus ground beetles? Biology Letters. 12. PMID 27677815 DOI: 10.1098/Rsbl.2016.0429  0.511
2016 Bemmels JB, Title PO, Ortego J, Knowles LL. Tests of species-specific models reveal the importance of drought in postglacial range shifts of a Mediterranean-climate tree: insights from iDDC modelling and ABC model selection. Molecular Ecology. PMID 27540890 DOI: 10.1111/Mec.13804  0.505
2016 Papadopoulou A, Knowles LL. Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses. Proceedings of the National Academy of Sciences of the United States of America. 113: 8018-24. PMID 27432974 DOI: 10.1073/Pnas.1601069113  0.472
2016 Massatti R, Knowles LL. Contrasting support for alternative models of genomic variation based on microhabitat preference: species-specific effects of climate change in alpine sedges. Molecular Ecology. PMID 27317885 DOI: 10.1111/Mec.13735  0.533
2016 Wachter GA, Papadopoulou A, Muster C, Arthofer W, Knowles LL, Steiner FM, Schlick-Steiner BC. Glacial refugia, recolonisation patterns, and diversification forces in Alpine-endemic Megabunus harvestmen. Molecular Ecology. PMID 27037513 DOI: 10.1111/Mec.13634  0.444
2016 He Q, Knowles LL. Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions. Molecular Ecology. PMID 26994406 DOI: 10.1111/Mec.13619  0.421
2016 Thomaz AT, Christie MR, Knowles LL. The architecture of river networks can drive the evolutionary dynamics of aquatic populations. Evolution; International Journal of Organic Evolution. PMID 26888211 DOI: 10.1111/Evo.12883  0.422
2016 Massatti R, Reznicek AA, Knowles LL. Utilizing RADseq data for phylogenetic analysis of challenging taxonomic groups: A case study in Carex sect. Racemosae. American Journal of Botany. PMID 26851268 DOI: 10.3732/Ajb.1500315  0.507
2016 Knowles LL, Chappell TM, Marquez EJ, Cohn TJ. Tests of the Role of Sexual Selection in Genitalic Divergence with Mutiple Hybrid Clines Journal of Orthoptera Research. 25: 75-82. DOI: 10.1665/034.025.0206  0.429
2016 Knowles LL, Massatti R, He Q, Olson LE, Lanier HC. Quantifying the similarity between genes and geography across Alaska's alpine small mammals Journal of Biogeography. DOI: 10.1111/Jbi.12728  0.522
2015 Economo EP, Sarnat EM, Janda M, Clouse R, Klimov PB, Fischer G, Blanchard BD, Ramirez LN, Andersen AN, Berman M, Guénard B, Lucky A, Rabeling C, Wilson EO, Knowles LL. Breaking out of biogeographical modules: range expansion and taxon cycles in the hyperdiverse ant genus Pheidole. Journal of Biogeography. 42: 2289-2301. PMID 27660394 DOI: 10.1111/Jbi.12592  0.425
2015 Sukumaran J, Economo EP, Knowles LL. Machine Learning Biogeographic Processes from Biotic Patterns: A New Trait-Dependent Dispersal and Diversification Model with Model Choice By Simulation-Trained Discriminant Analysis. Systematic Biology. PMID 26715585 DOI: 10.1093/Sysbio/Syv121  0.712
2015 Huang JP, Knowles LL. The species versus subspecies conundrum: quantitative delimitation from integrating multiple data types within a single Bayesian approach in Hercules beetles. Systematic Biology. PMID 26681696 DOI: 10.1093/Sysbio/Syv119  0.566
2015 Papadopoulou A, Knowles LL. Species-specific responses to island connectivity cycles: refined models for testing phylogeographic concordance across a Mediterranean Pleistocene Aggregate Island Complex. Molecular Ecology. 24: 4252-68. PMID 26154606 DOI: 10.1111/Mec.13305  0.543
2015 Lanier HC, Massatti R, He Q, Olson LE, Knowles LL. Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas (Ochotona collaris). Molecular Ecology. PMID 26096099 DOI: 10.1111/Mec.13270  0.463
2015 Christie MR, Knowles LL. Habitat corridors facilitate genetic resilience irrespective of species dispersal abilities or population sizes. Evolutionary Applications. 8: 454-63. PMID 26029259 DOI: 10.1111/Eva.12255  0.468
2015 Papadopoulou A, Knowles LL. Genomic tests of the species-pump hypothesis: Recent island connectivity cycles drive population divergence but not speciation in Caribbean crickets across the Virgin Islands. Evolution; International Journal of Organic Evolution. 69: 1501-17. PMID 25903255 DOI: 10.1111/Evo.12667  0.512
2015 Solís-Lemus C, Knowles LL, Ané C. Bayesian species delimitation combining multiple genes and traits in a unified framework. Evolution; International Journal of Organic Evolution. 69: 492-507. PMID 25495061 DOI: 10.1111/Evo.12582  0.508
2015 Lanier HC, Knowles LL. Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies. Molecular Phylogenetics and Evolution. 83: 191-9. PMID 25450097 DOI: 10.1016/J.Ympev.2014.10.022  0.579
2015 Economo EP, Klimov P, Sarnat EM, Guénard B, Weiser MD, Lecroq B, Knowles LL. Global phylogenetic structure of the hyperdiverse ant genus Pheidole reveals the repeated evolution of macroecological patterns. Proceedings. Biological Sciences / the Royal Society. 282: 20141416. PMID 25429013 DOI: 10.1098/Rspb.2014.1416  0.405
2015 Thomaz AT, Malabarba LR, Bonatto SL, Knowles LL. Testing the effect of palaeodrainages versus habitat stability on genetic divergence in riverine systems: Study of a Neotropical fish of the Brazilian coastal Atlantic Forest Journal of Biogeography. 42: 2389-2401. DOI: 10.1111/Jbi.12597  0.487
2014 Massatti R, Knowles LL. Microhabitat differences impact phylogeographic concordance of codistributed species: genomic evidence in montane sedges (Carex L.) from the Rocky Mountains. Evolution; International Journal of Organic Evolution. 68: 2833-46. PMID 25041894 DOI: 10.1111/Evo.12491  0.508
2014 Huang H, Knowles LL. Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences. Systematic Biology. PMID 24996413 DOI: 10.1093/Sysbio/Syu046  0.721
2014 Huang H, Tran LA, Knowles LL. Do estimated and actual species phylogenies match? Evaluation of East African cichlid radiations. Molecular Phylogenetics and Evolution. 78: 56-65. PMID 24837624 DOI: 10.1016/J.Ympev.2014.05.010  0.797
2014 Edwards DL, Knowles LL. Species detection and individual assignment in species delimitation: can integrative data increase efficacy? Proceedings. Biological Sciences / the Royal Society. 281: 20132765. PMID 24403337 DOI: 10.1098/Rspb.2013.2765  0.537
2014 Olave M, Solà E, Knowles LL. Upstream analyses create problems with DNA-based species delimitation. Systematic Biology. 63: 263-71. PMID 24361591 DOI: 10.1093/Sysbio/Syt106  0.379
2014 Alvarado-Serrano DF, Knowles LL. Ecological niche models in phylogeographic studies: applications, advances and precautions. Molecular Ecology Resources. 14: 233-48. PMID 24119244 DOI: 10.1111/1755-0998.12184  0.37
2014 Lanier HC, Huang H, Knowles LL. How low can you go? The effects of mutation rate on the accuracy of species-tree estimation. Molecular Phylogenetics and Evolution. 70: 112-9. PMID 24060367 DOI: 10.1016/J.Ympev.2013.09.006  0.793
2013 He Q, Edwards DL, Knowles LL. Integrative testing of how environments from the past to the present shape genetic structure across landscapes. Evolution; International Journal of Organic Evolution. 67: 3386-402. PMID 24299395 DOI: 10.1111/Evo.12159  0.424
2013 Alvarado-Serrano DF, Luna L, Knowles LL. Localized versus generalist phenotypes in a broadly distributed tropical mammal: how is intraspecific variation distributed across disparate environments? Bmc Evolutionary Biology. 13: 160. PMID 23899319 DOI: 10.1186/1471-2148-13-160  0.435
2013 Hovmöller R, Knowles LL, Kubatko LS. Effects of missing data on species tree estimation under the coalescent. Molecular Phylogenetics and Evolution. 69: 1057-62. PMID 23769751 DOI: 10.1016/J.Ympev.2013.06.004  0.561
2013 Oneal E, Knowles LL. Ecological selection as the cause and sexual differentiation as the consequence of species divergence? Proceedings. Biological Sciences / the Royal Society. 280: 20122236. PMID 23173206 DOI: 10.1098/Rspb.2012.2236  0.41
2013 Lanier HC, Edwards DL, Knowles LL. Phylogenetic structure of vertebrate communities across the Australian arid zone Journal of Biogeography. 40: 1059-1070. DOI: 10.1111/Jbi.12077  0.399
2013 Calonje M, Meerow AW, Knowles L, Knowles D, Griffith MP, Nakamura K, Francisco-Ortega J. Cycad biodiversity in the Bahamas Archipelago and conservation genetics of the threatened Zamia lucayana (Zamiaceae) Oryx. 47: 190-198. DOI: 10.1017/S0030605312000129  0.378
2012 Knowles LL, Lanier HC, Klimov PB, He Q. Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy. Molecular Phylogenetics and Evolution. 65: 501-9. PMID 22835380 DOI: 10.1016/J.Ympev.2012.07.004  0.557
2012 Brown JL, Knowles LL. Spatially explicit models of dynamic histories: examination of the genetic consequences of Pleistocene glaciation and recent climate change on the American Pika. Molecular Ecology. 21: 3757-75. PMID 22702844 DOI: 10.1111/J.1365-294X.2012.05640.X  0.492
2012 Edwards DL, Keogh JS, Knowles LL. Effects of vicariant barriers, habitat stability, population isolation and environmental features on species divergence in the south-western Australian coastal reptile community. Molecular Ecology. 21: 3809-22. PMID 22646317 DOI: 10.1111/J.1365-294X.2012.05637.X  0.551
2012 Lanier HC, Knowles LL. Is recombination a problem for species-tree analyses? Systematic Biology. 61: 691-701. PMID 22215721 DOI: 10.1093/Sysbio/Syr128  0.337
2011 Knowles LL, Klimov PB. Estimating phylogenetic relationships despite discordant gene trees across loci: the species tree of a diverse species group of feather mites (Acari: Proctophyllodidae). Parasitology. 138: 1750-9. PMID 21554840 DOI: 10.1017/S003118201100031X  0.58
2011 Klimov PB, Knowles LL. Repeated parallel evolution of minimal rRNAs revealed from detailed comparative analysis. The Journal of Heredity. 102: 283-93. PMID 21422103 DOI: 10.1093/Jhered/Esr005  0.321
2011 McCormack JE, Heled J, Delaney KS, Peterson AT, Knowles LL. Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays. Evolution; International Journal of Organic Evolution. 65: 184-202. PMID 20681982 DOI: 10.1111/J.1558-5646.2010.01097.X  0.456
2010 Carstens BC, Knowles LL. Navigating the unknown: model selection in phylogeography. Models of population structure: tools for thinkers. Molecular Ecology. 19: 4581-2. PMID 20958809 DOI: 10.1111/J.1365-294X.2010.04851.X  0.375
2010 Huang H, He Q, Kubatko LS, Knowles LL. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods. Systematic Biology. 59: 573-83. PMID 20833951 DOI: 10.1093/Sysbio/Syq047  0.766
2010 Knowles LL, Alvarado-Serrano DF. Exploring the population genetic consequences of the colonization process with spatio-temporally explicit models: insights from coupled ecological, demographic and genetic models in montane grasshoppers. Molecular Ecology. 19: 3727-45. PMID 20723059 DOI: 10.1111/j.1365-294X.2010.04702.x  0.402
2010 McCormack JE, Zellmer AJ, Knowles LL. Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests with niche models. Evolution; International Journal of Organic Evolution. 64: 1231-44. PMID 19922442 DOI: 10.1111/J.1558-5646.2009.00900.X  0.461
2010 Oneal E, Otte D, Knowles LL. Testing for biogeographic mechanisms promoting divergence in Caribbean crickets (genus Amphiacusta) Journal of Biogeography. 37: 530-540. DOI: 10.1111/J.1365-2699.2009.02231.X  0.494
2009 Huang H, Knowles LL. What is the danger of the anomaly zone for empirical phylogenetics? Systematic Biology. 58: 527-36. PMID 20525606 DOI: 10.1093/Sysbio/Syp047  0.786
2009 McCormack JE, Huang H, Knowles LL. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design. Systematic Biology. 58: 501-8. PMID 20525604 DOI: 10.1093/Sysbio/Syp045  0.794
2009 Knowles LL. Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Systematic Biology. 58: 463-7. PMID 20525600 DOI: 10.1093/sysbio/syp061  0.414
2009 Zellmer AJ, Knowles LL. Disentangling the effects of historic vs. contemporary landscape structure on population genetic divergence. Molecular Ecology. 18: 3593-602. PMID 19674302 DOI: 10.1111/J.1365-294X.2009.04305.X  0.414
2009 Kubatko LS, Carstens BC, Knowles LL. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics (Oxford, England). 25: 971-3. PMID 19211573 DOI: 10.1093/Bioinformatics/Btp079  0.391
2008 Knowles LL. Why does a method that fails continue to be used? Evolution; International Journal of Organic Evolution. 62: 2713-7. PMID 18973487 DOI: 10.1111/J.1558-5646.2008.00481.X  0.396
2008 Gray DA, Huang H, Knowles LL. Molecular evidence of a peripatric origin for two sympatric species of field crickets (Gryllus rubens and G. texensis) revealed from coalescent simulations and population genetic tests. Molecular Ecology. 17: 3836-55. PMID 18647239 DOI: 10.1111/J.1365-294X.2008.03827.X  0.774
2008 Knowles LL, Chan YH. Resolving species phylogenies of recent evolutionary radiations Annals of the Missouri Botanical Garden. 95: 224-231. DOI: 10.3417/2006102  0.323
2007 Connallon T, Knowles LL. Recombination rate and protein evolution in yeast. Bmc Evolutionary Biology. 7: 235. PMID 18042299 DOI: 10.1186/1471-2148-7-235  0.693
2007 Knowles LL, Carstens BC. Delimiting species without monophyletic gene trees. Systematic Biology. 56: 887-95. PMID 18027282 DOI: 10.1080/10635150701701091  0.517
2007 Márquez EJ, Knowles LL. Correlated evolution of multivariate traits: detecting co-divergence across multiple dimensions. Journal of Evolutionary Biology. 20: 2334-48. PMID 17956395 DOI: 10.1111/J.1420-9101.2007.01415.X  0.495
2007 Richards CL, Knowles LL. Tests of phenotypic and genetic concordance and their application to the conservation of Panamanian golden frogs (Anura, Bufonidae). Molecular Ecology. 16: 3119-33. PMID 17651191 DOI: 10.1111/j.1365-294X.2007.03369.x  0.389
2007 Klimov PB, O'Connor BM, Knowles LL. Museum specimens and phylogenies elucidate ecology's role in coevolutionary associations between mites and their bee hosts. Evolution; International Journal of Organic Evolution. 61: 1368-79. PMID 17542846 DOI: 10.1111/J.1558-5646.2007.00119.X  0.356
2007 Carstens BC, Knowles LL. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers. Systematic Biology. 56: 400-11. PMID 17520504 DOI: 10.1080/10635150701405560  0.487
2007 Knowles LL, Carstens BC, Keat ML. Coupling genetic and ecological-niche models to examine how past population distributions contribute to divergence. Current Biology : Cb. 17: 940-6. PMID 17475496 DOI: 10.1016/J.Cub.2007.04.033  0.397
2007 Onealt E, Connallon T, Knowles LL. Conflict between direct and indirect benefits of female choice in desert Drosophila. Biology Letters. 3: 29-32. PMID 17443958 DOI: 10.1098/Rsbl.2006.0565  0.641
2007 Knowles LL, Carstens BC. Estimating a geographically explicit model of population divergence. Evolution; International Journal of Organic Evolution. 61: 477-93. PMID 17348914 DOI: 10.1111/J.1558-5646.2007.00043.X  0.435
2007 Carstens BC, Knowles LL. Shifting distributions and speciation: species divergence during rapid climate change. Molecular Ecology. 16: 619-27. PMID 17257117 DOI: 10.1111/J.1365-294X.2006.03167.X  0.523
2006 Connallon T, Knowles LL. Evidence for overdominant selection maintaining X-linked fitness variation in Drosophila melanogaster. Evolution; International Journal of Organic Evolution. 60: 1445-53. PMID 16929661 DOI: 10.1554/06-119.1  0.659
2006 Maddison WP, Knowles LL. Inferring phylogeny despite incomplete lineage sorting. Systematic Biology. 55: 21-30. PMID 16507521 DOI: 10.1080/10635150500354928  0.462
2005 Knowles LL, Richards CL. Importance of genetic drift during Pleistocene divergence as revealed by analyses of genomic variation. Molecular Ecology. 14: 4023-32. PMID 16262856 DOI: 10.1111/J.1365-294X.2005.02711.X  0.565
2005 Connallon T, Knowles LL. Intergenomic conflict revealed by patterns of sex-biased gene expression. Trends in Genetics : Tig. 21: 495-9. PMID 16039005 DOI: 10.1016/J.Tig.2005.07.006  0.641
2004 Knowles LL, Hernandez BB, Markow TA. Exploring the consequences of postmating-prezygotic interactions between the sexes. Proceedings. Biological Sciences / the Royal Society. 271: S357-9. PMID 15504017 DOI: 10.1098/Rsbl.2004.0192  0.324
2004 Knowles LL. The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology. 17: 1-10. PMID 15000642 DOI: 10.1046/j.1420-9101.2003.00644.x  0.4
2002 Knowles LL, Maddison WP. Statistical phylogeography. Molecular Ecology. 11: 2623-35. PMID 12453245 DOI: 10.1046/j.1365-294X.2002.01637.x  0.313
2001 Knowles LL. An evolutionary slant on species-area curves. Trends in Ecology & Evolution. 16: 174-175. PMID 11245935  0.371
2001 Knowles LL. Genealogical portraits of speciation in montane grasshoppers (genus Melanoplus) from the sky islands of the Rocky Mountains. Proceedings. Biological Sciences / the Royal Society. 268: 319-24. PMID 11217904 DOI: 10.1098/rspb.2000.1364  0.49
1999 Knowles LL, Futuyma DJ, Eanes WF, Rannala B. INSIGHT INTO SPECIATION FROM HISTORICAL DEMOGRAPHY IN THE PHYTOPHAGOUS BEETLE GENUS OPHRAELLA. Evolution; International Journal of Organic Evolution. 53: 1846-1856. PMID 28565438 DOI: 10.1111/j.1558-5646.1999.tb04567.x  0.63
1999 Knowles LL, Levy A, McNellis JM, Greene KP, Futuyma DJ. TESTS OF INBREEDING EFFECTS ON HOST-SHIFT POTENTIAL IN THE PHYTOPHAGOUS BEETLE OPHRAELLA COMMUNA. Evolution; International Journal of Organic Evolution. 53: 561-567. PMID 28565413 DOI: 10.1111/j.1558-5646.1999.tb03791.x  0.558
1996 Meyer A, Knowles LL, Verheyen E. Widespread geographical distribution of mitochondrial haplotypes in rock-dwelling cichlid fishes from Lake Tanganyika. Molecular Ecology. 5: 341-50. PMID 8688956 DOI: 10.1111/J.1365-294X.1996.Tb00325.X  0.37
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