Naoji Yubuki - Publications

Affiliations: 
University of British Columbia, Vancouver, Vancouver, BC, Canada 

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mazancová E, Zadrobílková E, Yubuki N, Čepička I. Phylogenetic and morphological diversity of free-living diplomonads. European Journal of Protistology. 91: 126024. PMID 37774457 DOI: 10.1016/j.ejop.2023.126024  0.447
2023 Yubuki N, Torruella G, Galindo LJ, Heiss AA, Ciobanu MC, Shiratori T, Ishida KI, Blaz J, Kim E, Moreira D, López-García P, Eme L. Molecular and morphological characterization of four new ancyromonad genera and proposal for an updated taxonomy of the Ancyromonadida. The Journal of Eukaryotic Microbiology. e12997. PMID 37606230 DOI: 10.1111/jeu.12997  0.789
2023 Karnkowska A, Yubuki N, Maruyama M, Yamaguchi A, Kashiyama Y, Suzaki T, Keeling PJ, Hampl V, Leander BS. Euglenozoan kleptoplasty illuminates the early evolution of photoendosymbiosis. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220100120. PMID 36927158 DOI: 10.1073/pnas.2220100120  0.691
2022 Torruella G, Galindo LJ, Moreira D, Ciobanu M, Heiss AA, Yubuki N, Kim E, López-García P. Expanding the molecular and morphological diversity of Apusomonadida, a deep-branching group of gliding bacterivorous protists. The Journal of Eukaryotic Microbiology. e12956. PMID 36453005 DOI: 10.1111/jeu.12956  0.345
2022 Céza V, Kotyk M, Kubánková A, Yubuki N, Šťáhlavský F, Silberman JD, Čepička I. Free-living Trichomonads are Unexpectedly Diverse. Protist. 173: 125883. PMID 35660751 DOI: 10.1016/j.protis.2022.125883  0.457
2019 Yubuki N, Galindo LJ, Reboul G, López-García P, Brown MW, Pollet N, Moreira D. Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina - Blastocystis Stramenopile Lineage. Molecular Biology and Evolution. PMID 31693153 DOI: 10.1093/Molbev/Msz250  0.337
2018 Treitli SC, Kotyk M, Yubuki N, Jirounková E, Vlasáková J, Smejkalová P, Šípek P, Čepička I, Hampl V. Molecular and Morphological Diversity of the Oxymonad Genera Monocercomonoides and Blattamonas gen. nov. Protist. 169: 744-783. PMID 30138782 DOI: 10.1016/J.Protis.2018.06.005  0.531
2018 Yubuki N, Leander BS. Diversity and Evolutionary History of the Symbiontida (Euglenozoa) Frontiers in Ecology and Evolution. 6. DOI: 10.3389/Fevo.2018.00100  0.736
2017 Hoppenrath M, Yubuki N, Stern R, Leander BS. Ultrastructure and molecular phylogenetic position of a new marine sand-dwelling dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae) European Journal of Phycology. 52: 208-224. DOI: 10.1080/09670262.2016.1274788  0.789
2016 Yubuki N, Huang SS, Leander BS. Comparative Ultrastructure of Fornicate Excavates, Including a Novel Free-living Relative of Diplomonads: Aduncisulcus paluster gen. et sp. nov. Protist. 167: 584-596. PMID 27816016 DOI: 10.1016/J.Protis.2016.10.001  0.703
2016 Yubuki N, Zadrobílková E, Čepička I. Ultrastructure and Molecular Phylogeny of Iotanema spirale gen. nov. et sp. nov., a New Lineage of Endobiotic Fornicata with Strikingly Simplified Ultrastructure. The Journal of Eukaryotic Microbiology. PMID 27749017 DOI: 10.1111/jeu.12376  0.467
2016 Yubuki N, Čepička I, Leander BS. Evolution of the microtubular cytoskeleton (flagellar apparatus) in parasitic protists. Molecular and Biochemical Parasitology. PMID 26868980 DOI: 10.1016/J.Molbiopara.2016.02.002  0.626
2015 Yubuki N, Pánek T, Yabuki A, Čepička I, Takishita K, Inagaki Y, Leander BS. Morphological Identities of Two Different Marine Stramenopile Environmental Sequence Clades: Bicosoeca kenaiensis (Hilliard, 1971) and Cantina marsupialis (Larsen and Patterson, 1990) gen. nov., comb. nov. The Journal of Eukaryotic Microbiology. 62: 532-42. PMID 25594562 DOI: 10.1111/Jeu.12207  0.723
2015 Kamikawa R, Yubuki N, Yoshida M, Taira M, Nakamura N, Ishida Ki, Leander BS, Miyashita H, Hashimoto T, Mayama S, Inagaki Y. Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae) Phycological Research. 63: 19-28. DOI: 10.1111/Pre.12072  0.659
2014 Szabová J, Yubuki N, Leander BS, Triemer RE, Hampl V. The evolution of paralogous enzymes MAT and MATX within the Euglenida and beyond. Bmc Evolutionary Biology. 14: 25. PMID 24517416 DOI: 10.1186/1471-2148-14-25  0.587
2014 Heger TJ, Edgcomb VP, Kim E, Lukeš J, Leander BS, Yubuki N. A resurgence in field research is essential to better understand the diversity, ecology, and evolution of microbial eukaryotes. The Journal of Eukaryotic Microbiology. 61: 214-23. PMID 24325268 DOI: 10.1111/Jeu.12095  0.653
2013 Kamikawa R, Brown MW, Nishimura Y, Sako Y, Heiss AA, Yubuki N, Gawryluk R, Simpson AG, Roger AJ, Hashimoto T, Inagaki Y. Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. Bmc Evolutionary Biology. 13: 131. PMID 23800323 DOI: 10.1186/1471-2148-13-131  0.528
2013 Yubuki N, Simpson AG, Leander BS. Comprehensive ultrastructure of Kipferlia bialata provides evidence for character evolution within the Fornicata (Excavata). Protist. 164: 423-39. PMID 23517666 DOI: 10.1016/J.Protis.2013.02.002  0.685
2013 Yubuki N, Leander BS. Evolution of microtubule organizing centers across the tree of eukaryotes. The Plant Journal : For Cell and Molecular Biology. 75: 230-44. PMID 23398214 DOI: 10.1111/Tpj.12145  0.662
2013 Breglia SA, Yubuki N, Leander BS. Ultrastructure and molecular phylogenetic position of Heteronema scaphurum: a eukaryovorous euglenid with a cytoproct. The Journal of Eukaryotic Microbiology. 60: 107-20. PMID 23317460 DOI: 10.1111/Jeu.12014  0.774
2013 Yubuki N, Simpson AG, Leander BS. Reconstruction of the feeding apparatus in Postgaardi mariagerensis provides evidence for character evolution within the Symbiontida (Euglenozoa). European Journal of Protistology. 49: 32-9. PMID 22925570 DOI: 10.1016/J.Ejop.2012.07.001  0.717
2012 Yamaguchi A, Yubuki N, Leander BS. Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida). Bmc Evolutionary Biology. 12: 29. PMID 22401606 DOI: 10.1186/1471-2148-12-29  0.693
2012 Pánek T, Silberman JD, Yubuki N, Leander BS, Cepicka I. Diversity, evolution and molecular systematics of the Psalteriomonadidae, the main lineage of anaerobic/microaerophilic heteroloboseans (excavata: discoba). Protist. 163: 807-31. PMID 22192530 DOI: 10.1016/J.Protis.2011.11.002  0.74
2012 Yubuki N, Leander BS. Reconciling the bizarre inheritance of microtubules in complex (euglenid) microeukaryotes. Protoplasma. 249: 859-69. PMID 22048637 DOI: 10.1007/S00709-011-0340-Z  0.574
2011 Yabuki A, Nakayama T, Yubuki N, Hashimoto T, Ishida K, Inagaki Y. Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba". The Journal of Eukaryotic Microbiology. 58: 319-31. PMID 21569159 DOI: 10.1111/J.1550-7408.2011.00552.X  0.368
2011 Edgcomb VP, Breglia SA, Yubuki N, Beaudoin D, Patterson DJ, Leander BS, Bernhard JM. Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution. The Isme Journal. 5: 231-43. PMID 20686514 DOI: 10.1038/Ismej.2010.121  0.754
2010 Yubuki N, Céza V, Cepicka I, Yabuki A, Inagaki Y, Nakayama T, Inouye I, Leander BS. Cryptic diversity of free-living parabasalids, Pseudotrichomonas keilini and Lacusteria cypriaca n. g., n. sp., as inferred from small subunit rDNA sequences. The Journal of Eukaryotic Microbiology. 57: 554-61. PMID 20880033 DOI: 10.1111/J.1550-7408.2010.00509.X  0.708
2010 Breglia SA, Yubuki N, Hoppenrath M, Leander BS. Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida). Bmc Microbiology. 10: 145. PMID 20482870 DOI: 10.1186/1471-2180-10-145  0.745
2010 Kolisko M, Silberman JD, Cepicka I, Yubuki N, Takishita K, Yabuki A, Leander BS, Inouye I, Inagaki Y, Roger AJ, Simpson AG. A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environmental Microbiology. 12: 2700-10. PMID 20482740 DOI: 10.1111/J.1462-2920.2010.02239.X  0.767
2010 Yubuki N, Leander BS, Silberman JD. Ultrastructure and molecular phylogenetic position of a novel phagotrophic stramenopile from low oxygen environments: Rictus lutensis gen. et sp. nov. (Bicosoecida, incertae sedis). Protist. 161: 264-78. PMID 20034852 DOI: 10.1016/J.Protis.2009.10.004  0.688
2010 Kim E, Yubuki N, Leander BS, Graham LE. Ultrastructure and 18S rDNA phylogeny of Apoikia lindahlii comb. nov. (Chrysophyceae) and its epibiontic protists, Filos agilis gen. et sp. nov. (Bicosoecida) and Nanos amicus gen. et sp. nov. (Bicosoecida). Protist. 161: 177-96. PMID 20022300 DOI: 10.1016/J.Protis.2009.09.003  0.642
2010 Hoppenrath M, Yubuki N, Bachvaroff TR, Leander BS. Re-classification of Pheopolykrikos hartmannii as Polykrikos (Dinophyceae) based partly on the ultrastructure of complex extrusomes. European Journal of Protistology. 46: 29-37. PMID 19767184 DOI: 10.1016/J.Ejop.2009.08.003  0.767
2009 Yubuki N, Edgcomb VP, Bernhard JM, Leander BS. Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria. Bmc Microbiology. 9: 16. PMID 19173734 DOI: 10.1186/1471-2180-9-16  0.695
2008 Yubuki N, Nakayama T, Inouye I. A UNIQUE LIFE CYCLE AND PERENNATION IN A COLORLESS CHRYSOPHYTE SPUMELLA SP.(1). Journal of Phycology. 44: 164-72. PMID 27041053 DOI: 10.1111/J.1529-8817.2007.00441.X  0.345
2008 Yubuki N, Leander BS. Ultrastructure and molecular phylogeny of Stephanopogon minuta: an enigmatic microeukaryote from marine interstitial environments. European Journal of Protistology. 44: 241-53. PMID 18403188 DOI: 10.1016/J.Ejop.2007.12.001  0.718
2007 Takishita K, Yubuki N, Kakizoe N, Inagaki Y, Maruyama T. Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures. Extremophiles : Life Under Extreme Conditions. 11: 563-76. PMID 17426921 DOI: 10.1007/S00792-007-0068-Z  0.419
2007 Yubuki N, Inagaki Y, Nakayama T, Inouye I. Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n. gen., n. sp., a new member of the Fornicata. The Journal of Eukaryotic Microbiology. 54: 191-200. PMID 17403160 DOI: 10.1111/J.1550-7408.2007.00252.X  0.404
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