| Year |
Citation |
Score |
| 2017 |
Kim M, Kuehn LA, Bono JL, Berry ED, Kalchayanand N, Freetly HC, Benson AK, Wells JE. The impact of the bovine fecal microbiome on Escherichia coli O157:H7 prevalence and enumeration in naturally infected cattle. Journal of Applied Microbiology. PMID 28736954 DOI: 10.1111/jam.13545 |
0.44 |
|
| 2017 |
Zhang X, Mallick H, Tang Z, Zhang L, Cui X, Benson AK, Yi N. Negative binomial mixed models for analyzing microbiome count data. Bmc Bioinformatics. 18: 4. PMID 28049409 DOI: 10.1186/s12859-016-1441-7 |
0.64 |
|
| 2016 |
Benson AK, Floyd AR. Application of gravity and magnetic methods to assess geological hazards and natural resource potential in the Mosida Hills, Utah County, Utah Geophysics. 65: 1514-1526. DOI: 10.1190/1.1444840 |
0.4 |
|
| 2015 |
Ringel-Kulka T, Benson AK, Carroll IM, Kim J, Legge RM, Ringel Y. Molecular Characterization of the Intestinal Microbiota in Patients With and Without Abdominal Bloating. American Journal of Physiology. Gastrointestinal and Liver Physiology. ajpgi.00044.2015. PMID 26702134 DOI: 10.1152/ajpgi.00044.2015 |
0.84 |
|
| 2015 |
Benson AK. Host genetic architecture and the landscape of microbiome composition: humans weigh in. Genome Biology. 16: 203. PMID 26395444 DOI: 10.1186/s13059-015-0775-1 |
0.84 |
|
| 2014 |
Leamy LJ, Kelly SA, Nietfeldt J, Legge RM, Ma F, Hua K, Sinha R, Peterson DA, Walter J, Benson AK, Pomp D. Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice. Genome Biology. 15: 552. PMID 25516416 DOI: 10.1186/s13059-014-0552-6 |
0.84 |
|
| 2014 |
Benson AK, David JR, Gilbreth SE, Smith G, Nietfeldt J, Legge R, Kim J, Sinha R, Duncan CE, Ma J, Singh I. Microbial successions are associated with changes in chemical profiles of a model refrigerated fresh pork sausage during an 80-day shelf life study. Applied and Environmental Microbiology. 80: 5178-94. PMID 24928886 DOI: 10.1128/AEM.00774-14 |
0.84 |
|
| 2014 |
Eyun SI, Wang H, Pauchet Y, Ffrench-Constant RH, Benson AK, Valencia-Jiménez A, Moriyama EN, Siegfried BD. Molecular evolution of glycoside hydrolase genes in the Western corn rootworm (Diabrotica virgifera virgifera). Plos One. 9: e94052. PMID 24718603 DOI: 10.1371/journal.pone.0094052 |
0.84 |
|
| 2014 |
Wells JE, Kim M, Bono JL, Kuehn LA, Benson AK. Meat Science and Muscle Biology Symposium: Escherichia coli O157:H7, diet, and fecal microbiome in beef cattle. Journal of Animal Science. 92: 1345-55. PMID 24492542 DOI: 10.2527/jas.2013-7282 |
0.44 |
|
| 2014 |
Kim M, Kim J, Kuehn LA, Bono JL, Berry ED, Kalchayanand N, Freetly HC, Benson AK, Wells JE. Investigation of bacterial diversity in the feces of cattle fed different diets. Journal of Animal Science. 92: 683-94. PMID 24352967 DOI: 10.2527/jas.2013-6841 |
0.84 |
|
| 2014 |
Wells JE, Kim M, Bono JL, Kuehn LA, Benson AK. Meat science and muscle biology symposium: Escherichia coli o157:H7, diet, and fecal microbiome in beef cattle Journal of Animal Science. 92: 1345-1355. DOI: 10.2527/jas2013-7282 |
0.84 |
|
| 2014 |
Ffrench-constant R, Valencia A, Eyun SI, Wang H, Pauchet Y, Benson AK. Correction: Molecular evolution of glycoside hydrolase genes in the western corn rootworm (Diabrotica virgifera virgifera) (PLoS ONE (2014) 9, 4 (e94052) DOI: 10.1371/journal.pone.0094052) Plos One. 9. DOI: 10.1371/journal.pone.0102818 |
0.84 |
|
| 2013 |
Frese SA, Mackenzie DA, Peterson DA, Schmaltz R, Fangman T, Zhou Y, Zhang C, Benson AK, Cody LA, Mulholland F, Juge N, Walter J. Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont. Plos Genetics. 9: e1004057. PMID 24385934 DOI: 10.1371/journal.pgen.1004057 |
0.84 |
|
| 2013 |
Ma J, Benson AK, Kachman SD, Jacobsen DJ, Harshman LG. Drosophila melanogaster Selection for Survival after Infection with Bacillus cereus Spores: Evolutionary Genetic and Phenotypic Investigations of Respiration and Movement. International Journal of Evolutionary Biology. 2013: 576452. PMID 23634317 DOI: 10.1155/2013/576452 |
0.48 |
|
| 2012 |
Ma J, Benson AK, Kachman SD, Hu Z, Harshman LG. Drosophila melanogaster Selection for Survival of Bacillus cereus Infection: Life History Trait Indirect Responses. International Journal of Evolutionary Biology. 2012: 935970. PMID 23094195 DOI: 10.1155/2012/935970 |
0.48 |
|
| 2012 |
McKnite AM, Perez-Munoz ME, Lu L, Williams EG, Brewer S, Andreux PA, Bastiaansen JW, Wang X, Kachman SD, Auwerx J, Williams RW, Benson AK, Peterson DA, Ciobanu DC. Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits. Plos One. 7: e39191. PMID 22723961 DOI: 10.1371/journal.pone.0039191 |
0.84 |
|
| 2012 |
Bokulich NA, Joseph CM, Allen G, Benson AK, Mills DA. Next-generation sequencing reveals significant bacterial diversity of botrytized wine. Plos One. 7: e36357. PMID 22563494 DOI: 10.1371/journal.pone.0036357 |
0.84 |
|
| 2012 |
Russo SE, Legge R, Weber KA, Brodie EL, Goldfarb KC, Benson AK, Tan S. Bacterial community structure of contrasting soils underlying Bornean rain forests: Inferences from microarray and next-generation sequencing methods Soil Biology and Biochemistry. 55: 48-59. DOI: 10.1016/j.soilbio.2012.05.021 |
0.84 |
|
| 2011 |
Kasaikina MV, Kravtsova MA, Lee BC, Seravalli J, Peterson DA, Walter J, Legge R, Benson AK, Hatfield DL, Gladyshev VN. Dietary selenium affects host selenoproteome expression by influencing the gut microbiota. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 25: 2492-9. PMID 21493887 DOI: 10.1096/fj.11-181990 |
0.84 |
|
| 2011 |
Frese SA, Benson AK, Tannock GW, Loach DM, Kim J, Zhang M, Oh PL, Heng NC, Patil PB, Juge N, Mackenzie DA, Pearson BM, Lapidus A, Dalin E, Tice H, et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. Plos Genetics. 7: e1001314. PMID 21379339 DOI: 10.1371/journal.pgen.1001314 |
0.84 |
|
| 2010 |
Russell DJ, Way SF, Benson AK, Sayood K. A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences. Bmc Bioinformatics. 11: 601. PMID 21167044 DOI: 10.1186/1471-2105-11-601 |
0.84 |
|
| 2010 |
Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, Zhang M, Oh PL, Nehrenberg D, Hua K, Kachman SD, Moriyama EN, Walter J, Peterson DA, Pomp D. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proceedings of the National Academy of Sciences of the United States of America. 107: 18933-8. PMID 20937875 DOI: 10.1073/pnas.1007028107 |
0.84 |
|
| 2010 |
Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, Roos S, Walter J. Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. The Isme Journal. 4: 377-87. PMID 19924154 DOI: 10.1038/ismej.2009.123 |
0.84 |
|
| 2009 |
MartÃnez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J. Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota. Applied and Environmental Microbiology. 75: 4175-84. PMID 19411417 DOI: 10.1128/AEM.00380-09 |
0.84 |
|
| 2009 |
Yang Z, Kim J, Zhang C, Zhang M, Nietfeldt J, Southward CM, Surette MG, Kachman SD, Benson AK. Genomic instability in regions adjacent to a highly conserved pch prophage in Escherichia coli O157:H7 generates diversity in expression patterns of the LEE pathogenicity island. Journal of Bacteriology. 191: 3553-68. PMID 19329643 DOI: 10.1128/JB.01738-08 |
0.84 |
|
| 2008 |
Benson A. Molecular and Population Genetics of Virulence Traits in Escherichia Coli O157: H7 Microbial Food Safety in Animal Agriculture: Current Topics. 155-166. DOI: 10.1002/9780470752616.ch17 |
0.84 |
|
| 2007 |
Dempsey MP, Dobson M, Zhang C, Zhang M, Lion C, Gutiérrez-Martín CB, Iwen PC, Fey PD, Olson ME, Niemeyer D, Francesconi S, Crawford R, Stanley M, Rhodes J, Wagner DM, ... ... Benson AK, et al. Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula. Applied and Environmental Microbiology. 73: 7465-70. PMID 17890329 DOI: 10.1128/AEM.00646-07 |
0.84 |
|
| 2007 |
Zhang Y, Laing C, Steele M, Ziebell K, Johnson R, Benson AK, Taboada E, Gannon VP. Genome evolution in major Escherichia coli O157:H7 lineages. Bmc Genomics. 8: 121. PMID 17506902 DOI: 10.1186/1471-2164-8-121 |
0.84 |
|
| 2006 |
Goh YJ, Zhang C, Benson AK, Schlegel V, Lee JH, Hutkins RW. Identification of a putative operon involved in fructooligosaccharide utilization by Lactobacillus paracasei. Applied and Environmental Microbiology. 72: 7518-30. PMID 17028235 DOI: 10.1128/AEM.00877-06 |
0.84 |
|
| 2006 |
Dempsey MP, Nietfeldt J, Ravel J, Hinrichs S, Crawford R, Benson AK. Paired-end sequence mapping detects extensive genomic rearrangement and translocation during divergence of Francisella tularensis subsp. tularensis and Francisella tularensis subsp. holarctica populations. Journal of Bacteriology. 188: 5904-14. PMID 16885459 DOI: 10.1128/JB.00437-06 |
0.84 |
|
| 2005 |
Zhang C, Nietfeldt J, Zhang M, Benson AK. Functional consequences of genome evolution in Listeria monocytogenes: the lmo0423 and lmo0422 genes encode sigmaC and LstR, a lineage II-specific heat shock system. Journal of Bacteriology. 187: 7243-53. PMID 16237008 DOI: 10.1128/JB.187.21.7243-7253.2005 |
0.84 |
|
| 2004 |
Yang Z, Kovar J, Kim J, Nietfeldt J, Smith DR, Moxley RA, Olson ME, Fey PD, Benson AK. Identification of common subpopulations of non-sorbitol-fermenting, beta-glucuronidase-negative Escherichia coli O157:H7 from bovine production environments and human clinical samples. Applied and Environmental Microbiology. 70: 6846-54. PMID 15528552 DOI: 10.1128/AEM.70.11.6846-6854.2004 |
0.84 |
|
| 2004 |
Gilbreth SE, Benson AK, Hutkins RW. Catabolite repression and virulence gene expression in Listeria monocytogenes. Current Microbiology. 49: 95-8. PMID 15297913 DOI: 10.1007/s00284-004-4204-z |
0.84 |
|
| 2004 |
Giles WP, Benson AK, Olson ME, Hutkins RW, Whichard JM, Winokur PL, Fey PD. DNA sequence analysis of regions surrounding blaCMY-2 from multiple Salmonella plasmid backbones. Antimicrobial Agents and Chemotherapy. 48: 2845-52. PMID 15273090 DOI: 10.1128/AAC.48.8.2845-2852.2004 |
0.84 |
|
| 2004 |
Samrakandi MM, Zhang C, Zhang M, Nietfeldt J, Kim J, Iwen PC, Olson ME, Fey PD, Duhamel GE, Hinrichs SH, Cirillo JD, Benson AK. Genome diversity among regional populations of Francisella tularensis subspecies tularensis and Francisella tularensis subspecies holarctica isolated from the US. Fems Microbiology Letters. 237: 9-17. PMID 15268932 DOI: 10.1016/j.femsle.2004.06.008 |
0.84 |
|
| 2004 |
Cetin MS, Zhang C, Hutkins RW, Benson AK. Regulation of transcription of compatible solute transporters by the general stress sigma factor, sigmaB, in Listeria monocytogenes. Journal of Bacteriology. 186: 794-802. PMID 14729706 DOI: 10.1128/JB.186.3.794-802.2004 |
0.84 |
|
| 2003 |
Zhang C, Zhang M, Ju J, Nietfeldt J, Wise J, Terry PM, Olson M, Kachman SD, Wiedmann M, Samadpour M, Benson AK. Genome diversification in phylogenetic lineages I and II of Listeria monocytogenes: identification of segments unique to lineage II populations. Journal of Bacteriology. 185: 5573-84. PMID 12949110 DOI: 10.1128/JB.185.18.5573-5584.2003 |
0.84 |
|
| 2003 |
Byrne CM, Erol I, Call JE, Kaspar CW, Buege DR, Hiemke CJ, Fedorka-Cray PJ, Benson AK, Wallace FM, Luchansky JB. Characterization of Escherichia coli O157:H7 from downer and healthy dairy cattle in the upper Midwest region of the United States. Applied and Environmental Microbiology. 69: 4683-8. PMID 12902258 DOI: 10.1128/AEM.69.8.4683-4688.2003 |
0.84 |
|
| 2001 |
Kim J, Nietfeldt J, Ju J, Wise J, Fegan N, Desmarchelier P, Benson AK. Ancestral divergence, genome diversification, and phylogeographic variation in subpopulations of sorbitol-negative, beta-glucuronidase-negative enterohemorrhagic Escherichia coli O157. Journal of Bacteriology. 183: 6885-97. PMID 11698378 DOI: 10.1128/JB.183.23.6885-6897.2001 |
0.84 |
|
| 2000 |
Becker LA, Evans SN, Hutkins RW, Benson AK. Role of sigma(B) in adaptation of Listeria monocytogenes to growth at low temperature. Journal of Bacteriology. 182: 7083-7. PMID 11092874 DOI: 10.1128/JB.182.24.7083-7087.2000 |
0.84 |
|
| 1999 |
Kim J, Nietfeldt J, Benson AK. Octamer-based genome scanning distinguishes a unique subpopulation of Escherichia coli O157:H7 strains in cattle. Proceedings of the National Academy of Sciences of the United States of America. 96: 13288-93. PMID 10557313 DOI: 10.1073/pnas.96.23.13288 |
0.84 |
|
| 1999 |
Christensen DP, Benson AK, Hutkins RW. Mutational analysis of the role of HPr in Listeria monocytogenes Applied and Environmental Microbiology. 65: 2112-2115. PMID 10224008 |
0.84 |
|
| 1999 |
Benson AK, Wu J. A modeling solution for predicting (a) dry rock bulk modulus, rigidity modulus and (b) seismic velocities and reflection coefficients in porous, fluid-filled rocks with applications to laboratory rock samples and well logs Journal of Applied Geophysics. 41: 49-73. DOI: 10.1016/S0926-9851(98)00049-4 |
0.4 |
|
| 1999 |
Benson AK, Floyd AR. Geophysical investigation of geological hazards associated with building in the Mosida Hills, Utah County, Utah Engineering Geology and Geotechnical Engineering. Proceedings of the 34th Symposium, Logan, April 1999.. 271-286. |
0.4 |
|
| 1999 |
Benson AK, Brown LT. Three-dimensional geophysical analysis of shallow concealed faults in East Provo, Utah- Engineering concerns Engineering Geology and Geotechnical Engineering. Proceedings of the 34th Symposium, Logan, April 1999.. 302-315. |
0.4 |
|
| 1999 |
Benson AK, Mustoe NB. Mapping shallow subsurface geology, water table, and soil and groundwater contamination in northeastern Arizona using electromagnetic surveys-Environmental and engineering applications Engineering Geology and Geotechnical Engineering. Proceedings of the 34th Symposium, Logan, April 1999.. 257-269. |
0.4 |
|
| 1998 |
Christensen DP, Benson AK, Hutkins RW. Cloning and expression of the Listeria monocytogenes Scott A ptsH and ptsI genes, coding for HPr and enzyme I, respectively, of the phosphotransferase system Applied and Environmental Microbiology. 64: 3147-3152. PMID 9726852 |
0.84 |
|
| 1998 |
Becker LA, Cetin MS, Hutkins RW, Benson AK. Identification of the gene encoding the alternative sigma factor sigmaB from Listeria monocytogenes and its role in osmotolerance. Journal of Bacteriology. 180: 4547-54. PMID 9721294 |
0.84 |
|
| 1998 |
Benson AK, Hash ST. Integrated three-dimensional interpretation of major concealed faults beneath Mapleton, Utah County, Utah using gravity data, supported with magnetic data Engineering Geology. 51: 109-130. DOI: 10.1016/S0013-7952(98)00045-3 |
0.4 |
|
| 1997 |
Wu J, Ohta N, Benson AK, Ninfa AJ, Newton A. Purification, characterization, and reconstitution of DNA-dependent RNA polymerases from Caulobacter crescentus Journal of Biological Chemistry. 272: 21558-21564. PMID 9261176 DOI: 10.1074/jbc.272.34.21558 |
0.84 |
|
| 1997 |
Benson AK, Payne KL, Stubben MA. Mapping groundwater contamination using dc resistivity and VLF geophysical methods - A case study Geophysics. 62: 80-86. |
0.4 |
|
| 1995 |
Wu J, Benson AK, Newton A. Global regulation of a σ54-dependent flagellar gene family in Caulobacter crescentus by the transcriptional activator FlbD Journal of Bacteriology. 177: 3241-3250. PMID 7768824 |
0.84 |
|
| 1995 |
Benson AK. Applications of ground penetrating radar in assessing some geological hazards: examples of groundwater contamination, faults, cavities Journal of Applied Geophysics. 33: 177-193. DOI: 10.1016/0926-9851(95)90040-3 |
0.4 |
|
| 1995 |
Benson AK, Mustoe NB. Analyzing shallow faulting at a site in the Wasatch fault zone, Utah, USA, by integrating seismic, gravity, magnetic, and trench data Engineering Geology. 40: 139-156. DOI: 10.1016/0013-7952(95)00060-7 |
0.4 |
|
| 1995 |
Benson AK. Decomposition and inversion of elastic reflection data; first-order angular dependence and applications Journal of Computational Physics. 121: 102-114. DOI: 10.1006/jcph.1995.1182 |
0.4 |
|
| 1995 |
Benson AK. An integration of geophysical methods and geochemical analysis to map acid mine drainage - a case study Exploration &Amp; Mining Geology. 4: 411-419. |
0.4 |
|
| 1995 |
Benson AK. Phase-shift migration with a variable-length spatial transform - an algorithm for moderately varying lateral velocities Geophysical Prospecting. 43: 729-741. |
0.4 |
|
| 1995 |
Benson AK, Stubben MA. Interval resistivities and very low frequency electromagnetic induction - An aid to detecting groundwater contamination in space and time: A case study Environmental Geosciences. 2: 74-84. |
0.4 |
|
| 1994 |
Benson AK, Ramakrishnan G, Ohta N, Feng J, Ninfa AJ, Newton A. The Caulobacter crescentus FlbD protein acts at ftr sequence elements both to activate and to repress transcription of cell cycle-regulated flagellar genes Proceedings of the National Academy of Sciences of the United States of America. 91: 4989-4993. PMID 8197169 DOI: 10.1073/pnas.91.11.4989 |
0.84 |
|
| 1994 |
Benson AK, Wu J, Newton A. The role of FlbD in regulation of flagellar gene transcription in Caulobacter crescentus Research in Microbiology. 145: 420-430. PMID 7855428 DOI: 10.1016/0923-2508(94)90090-6 |
0.84 |
|
| 1994 |
Benson AK. Effects of shale and contaminants on (Vs/Vp) ratios in transversely - isotropic geology Hydrogeology, Waste Disposal, Science and Politics. Proc. 30th Symposium On Engineering Geology and Geotechnical Engineering, Idaho, 1994. 305-319. |
0.4 |
|
| 1994 |
Benson AK. Environmental geophysics: locating and evaluating subsurface geology, geologic hazards, groundwater contamination, etc Hydrogeology, Waste Disposal, Science and Politics. Proc. 30th Symposium On Engineering Geology and Geotechnical Engineering, Idaho, 1994. 285-303. |
0.4 |
|
| 1993 |
Benson AK, Haldenwang WG. Regulation of sigma B levels and activity in Bacillus subtilis. Journal of Bacteriology. 175: 2347-56. PMID 8468294 |
0.84 |
|
| 1993 |
Benson AK, Haldenwang WG. Bacillus subtilis sigma B is regulated by a binding protein (RsbW) that blocks its association with core RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 90: 2330-4. PMID 8460143 |
0.84 |
|
| 1993 |
Benson AK, Haldenwang WG. The sigma B-dependent promoter of the Bacillus subtilis sigB operon is induced by heat shock. Journal of Bacteriology. 175: 1929-35. PMID 8458834 |
0.84 |
|
| 1992 |
Benson AK, Haldenwang WG. Characterization of a regulatory network that controls sigma B expression in Bacillus subtilis. Journal of Bacteriology. 174: 749-57. PMID 1732211 |
0.84 |
|
| 1992 |
Benson AK. An anti -spatial -aliasing filter for explicit modeling and imaging in inhomogeneous media Journal of Computational Physics. 99: 183-189. DOI: 10.1016/0021-9991(92)90199-9 |
0.4 |
|
| 1992 |
Benson AK. Integrating ground penetrating radar and electrical resistivity data to delineate groundwater contamination Special Paper - Geological Survey of Finland. 16: 197-203. |
0.4 |
|
| 1991 |
Benson AK, Mustoe NB. Delineating concealed faults and shallow subsurface geology along the Wasatch Front, Utah, USA, by integrating geophysical and trench data Quarterly Journal of Engineering Geology. 24: 375-387. DOI: 10.1144/GSL.QJEG.1991.024.04.05 |
0.4 |
|
| 1991 |
Benson AK. An explicit, unconditionally stable, 15-degree depth migration and modeling algorithm implemented in poststack, directional, and prestack modes Geophysics. 56: 1412-1422. |
0.4 |
|
| 1990 |
Benson AK. An explicit finite-difference solution to the wave equation with variable velocity Journal of Computational Physics. 87: 47-60. DOI: 10.1016/0021-9991(90)90224-O |
0.4 |
|
| 1989 |
Luchansky JB, Benson AK, Atherly AG. Construction, transfer and properties of a novel temperature-sensitive integrable plasmid for genomic analysis of Staphylococcus aureus Molecular Microbiology. 3: 65-78. PMID 2541309 |
0.84 |
|
| 1989 |
Benson AK. Residual depth-migration: enhancing dips Geophysical Prospecting. 37: 771-779. |
0.4 |
|
| 1987 |
Kaspar CW, Hartman PA, Benson AK. Coagglutination and enzyme capture tests for detection of Escherichia coli β-galactosidase, β-glucuronidase, and glutamate decarboxylase Applied and Environmental Microbiology. 53: 1073-1077. PMID 3111364 |
0.84 |
|
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