David A Mills - Publications

Affiliations: 
University of California, Davis, Davis, CA 
Area:
Food Science, Microbiology

198 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ba Z, Lee Y, Meng H, Kris-Etherton PM, Rogers CJ, Lewis ZT, Mills DA, Furumoto EJ, Rolon ML, Fleming JA, Roberts RF. Matrix Effects on the Delivery Efficacy of Bifidobacterium animalis subsp. BB-12 on Fecal Microbiota, Gut Transit Time, and Short-Chain Fatty Acids in Healthy Young Adults. Msphere. e0008421. PMID 34232082 DOI: 10.1128/mSphere.00084-21  0.56
2021 Griggs RG, Steenwerth KL, Mills DA, Cantu D, Bokulich NA. Sources and Assembly of Microbial Communities in Vineyards as a Functional Component of Winegrowing. Frontiers in Microbiology. 12: 673810. PMID 33927711 DOI: 10.3389/fmicb.2021.673810  0.72
2021 Wang H, Simpson JH, Kotra ME, Zhu Y, Wickramasinghe S, Mills DA, Chiu NHL. Epitranscriptomic profile of Lactobacillus agilis and its adaptation to growth on inulin. Bmc Research Notes. 14: 154. PMID 33883017 DOI: 10.1186/s13104-021-05563-2  0.28
2021 Chin N, Méndez-Lagares G, Taft DH, Laleau V, Kieu H, Narayan NR, Roberts SB, Mills DA, Hartigan-O'Connor DJ, Flaherman VJ. Transient Effect of Infant Formula Supplementation on the Intestinal Microbiota. Nutrients. 13. PMID 33804415 DOI: 10.3390/nu13030807  0.24
2021 Kumar S, Khan MA, Beijer E, Liu J, Lowe KK, Young W, Mills DA, Moon CD. Effect of milk replacer allowance on calf faecal bacterial community profiles and fermentation. Animal Microbiome. 3: 27. PMID 33795026 DOI: 10.1186/s42523-021-00088-2  0.28
2020 Ehrlich AM, Pacheco AR, Henrick BM, Taft D, Xu G, Huda MN, Mishchuk D, Goodson ML, Slupsky C, Barile D, Lebrilla CB, Stephensen CB, Mills DA, Raybould HE. Indole-3-lactic acid associated with Bifidobacterium-dominated microbiota significantly decreases inflammation in intestinal epithelial cells. Bmc Microbiology. 20: 357. PMID 33225894 DOI: 10.1186/s12866-020-02023-y  0.72
2020 Depner M, Taft DH, Kirjavainen PV, Kalanetra KM, Karvonen AM, Peschel S, Schmausser-Hechfellner E, Roduit C, Frei R, Lauener R, Divaret-Chauveau A, Dalphin JC, Riedler J, Roponen M, Kabesch M, ... Mills DA, et al. Maturation of the gut microbiome during the first year of life contributes to the protective farm effect on childhood asthma. Nature Medicine. PMID 33139948 DOI: 10.1038/s41591-020-1095-x  0.44
2020 Zhu Y, Liu J, Lopez JM, Mills DA. Inulin fermentation by lactobacilli and bifidobacteria from dairy calves. Applied and Environmental Microbiology. PMID 33008824 DOI: 10.1128/AEM.01738-20  0.28
2020 Hasegawa Y, Chen SY, Sheng L, Jena PK, Kalanetra KM, Mills DA, Wan YY, Slupsky CM. Long-term effects of western diet consumption in male and female mice. Scientific Reports. 10: 14686. PMID 32895402 DOI: 10.1038/s41598-020-71592-9  0.44
2020 Liu J, Yu F, Call DR, Mills DA, Zhang A, Zhao Z. On-farm soil resistome is modified after treating dairy calves with the antibiotic florfenicol. The Science of the Total Environment. 750: 141694. PMID 32871373 DOI: 10.1016/j.scitotenv.2020.141694  0.28
2020 Ozturk G, Shah IM, Mills DA, German JB, de Moura Bell JMLN. The antimicrobial activity of bovine milk xanthine oxidase. International Dairy Journal. 102. PMID 32863603 DOI: 10.1016/j.idairyj.2019.104581  0.72
2020 Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. Mbio. 11. PMID 32843557 DOI: 10.1128/Mbio.01851-20  0.04
2020 Amicucci MJ, Nandita E, Galermo AG, Castillo JJ, Chen S, Park D, Smilowitz JT, German JB, Mills DA, Lebrilla CB. A nonenzymatic method for cleaving polysaccharides to yield oligosaccharides for structural analysis. Nature Communications. 11: 3963. PMID 32770134 DOI: 10.1038/S41467-020-17778-1  0.72
2020 Liu J, Zhu Y, Jay-Russell M, Lemay DG, Mills DA. Reservoirs of antimicrobial resistance genes in retail raw milk. Microbiome. 8: 99. PMID 32591006 DOI: 10.1186/S40168-020-00861-6  0.44
2020 Welker DL, Crowley BL, Evans JB, Welker MH, Broadbent JR, Roberts RF, Mills DA. Transformation of Lactiplantibacillus plantarum and Apilactobacillus kunkeei is influenced by recipient cell growth temperature, vector replicon, and DNA methylation. Journal of Microbiological Methods. 105967. PMID 32512121 DOI: 10.1016/J.Mimet.2020.105967  0.01
2020 Dunne-Castagna VP, Mills DA, Lönnerdal B. Effects of Milk Secretory Immunoglobulin A on the Commensal Microbiota. Nestle Nutrition Institute Workshop Series. 94: 1-11. PMID 32224615 DOI: 10.1159/000505335  0.01
2020 Treiber ML, Taft DH, Korf I, Mills DA, Lemay DG. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. Bmc Bioinformatics. 21: 74. PMID 32093654 DOI: 10.1186/S12859-020-3416-Y  0.44
2020 Weinborn V, Li Y, Shah IM, Yu H, Dallas DC, German JB, Mills DA, Chen X, Barile D. Production of functional mimics of human milk oligosaccharides by enzymatic glycosylation of bovine milk oligosaccharides. International Dairy Journal. 102. PMID 32089591 DOI: 10.1016/j.idairyj.2019.104583  0.72
2020 Westreich ST, Salcedo J, Durbin-Johnson B, Smilowitz JT, Korf I, Mills DA, Barile D, Lemay DG. Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. The Journal of Nutritional Biochemistry. 79: 108340. PMID 32028108 DOI: 10.1016/J.Jnutbio.2020.108340  0.64
2019 Taft DH, Akre S, Madrid N, Knoesen A, Mills DA, Lewis ZT. Resident microbes of lactation rooms and daycares. Peerj. 7: e8168. PMID 31844574 DOI: 10.7717/Peerj.8168  0.56
2019 Liu J, Taft DH, Maldonado-Gomez MX, Johnson D, Treiber ML, Lemay DG, DePeters EJ, Mills DA. The fecal resistome of dairy cattle is associated with diet during nursing. Nature Communications. 10: 4406. PMID 31562300 DOI: 10.1038/s41467-019-12111-x  0.44
2019 Elgin TG, Fricke EM, Gong H, Reese J, Mills DA, Kalantera KM, Underwood MA, McElroy SJ. Fetal exposure to maternal inflammation interrupts murine intestinal development and increases susceptibility to neonatal intestinal injury. Disease Models & Mechanisms. PMID 31537532 DOI: 10.1242/dmm.040808  0.56
2019 Wedgwood S, Warford C, Agvatisiri SR, Thai PN, Chiamvimonvat N, Kalanetra KM, Lakshminrusimha S, Steinhorn RH, Mills DA, Underwood MA. The developing gut-lung axis: postnatal growth restriction, intestinal dysbiosis, and pulmonary hypertension in a rodent model. Pediatric Research. PMID 31537010 DOI: 10.1038/S41390-019-0578-2  0.56
2019 Cremonini E, Daveri E, Mastaloudis A, Adamo AM, Mills D, Kalanetra K, Hester SN, Wood SM, Fraga CG, Oteiza PI. Anthocyanins protect the gastrointestinal tract from high fat diet-induced alterations in redox signaling, barrier integrity and dysbiosis. Redox Biology. 26: 101269. PMID 31330482 DOI: 10.1016/j.redox.2019.101269  0.08
2019 Liu S, Skory C, Liang X, Mills D, Qureshi N. Increased ethanol tolerance associated with the pntAB locus of Oenococcus oeni and Lactobacillus buchneri. Journal of Industrial Microbiology & Biotechnology. PMID 31289974 DOI: 10.1007/s10295-019-02209-y  0.12
2019 Taft D, Ho S, Tancredi D, Stephensen C, Hinde K, von Mutius E, Kirjavainen P, Dalphin JC, Lauener R, Riedler J, Morrow A, Lewis Z, Mills D. Population Duration of Breastfeeding and Prevalence of Bifidobacterium Longum Subspecies Infantis (OR01-01-19). Current Developments in Nutrition. 3. PMID 31224799 DOI: 10.1093/cdn/nzz040.OR01-01-19  0.04
2019 Cowardin CA, Ahern PP, Kung VL, Hibberd MC, Cheng J, Guruge JL, Sundaresan V, Head RD, Barile D, Mills DA, Barratt MJ, Huq S, Ahmed T, Gordon JI. Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition. Proceedings of the National Academy of Sciences of the United States of America. PMID 31138692 DOI: 10.1073/pnas.1821770116  0.64
2019 Huda MN, Ahmad SM, Kalanetra KM, Taft DH, Alam MJ, Khanam A, Raqib R, Underwood MA, Mills DA, Stephensen CB. Neonatal Vitamin A Supplementation and Vitamin A Status Are Associated with Gut Microbiome Composition in Bangladeshi Infants in Early Infancy and at 2 Years of Age. The Journal of Nutrition. PMID 31006815 DOI: 10.1093/jn/nxz034  0.56
2019 Taft DH, Salinero LK, Vongbhavit K, Kalanetra KM, Masarweh C, Yu A, Underwood MA, Mills DA. Bacterial Colonization and Antimicrobial Resistance Genes in Neonatal Enteral Feeding Tubes. Fems Microbiology Ecology. PMID 30915455 DOI: 10.1093/femsec/fiz039  0.56
2019 Huda MN, Ahmad SM, Alam MJ, Khanam A, Kalanetra KM, Taft DH, Raqib R, Underwood MA, Mills DA, Stephensen CB. Abundance in Early Infancy and Vaccine Response at 2 Years of Age. Pediatrics. PMID 30674610 DOI: 10.1542/peds.2018-1489  0.56
2019 Sanctuary MR, Kain JN, Chen SY, Kalanetra K, Lemay DG, Rose DR, Yang HT, Tancredi DJ, German JB, Slupsky CM, Ashwood P, Mills DA, Smilowitz JT, Angkustsiri K. Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms. Plos One. 14: e0210064. PMID 30625189 DOI: 10.1371/Journal.Pone.0210064  0.72
2018 Lueschow SR, Stumphy J, Gong H, Kern SL, Elgin TG, Underwood MA, Kalanetra KM, Mills DA, Wong MH, Meyerholz DK, Good M, McElroy SJ. Loss of murine Paneth cell function alters the immature intestinal microbiome and mimics changes seen in neonatal necrotizing enterocolitis. Plos One. 13: e0204967. PMID 30273395 DOI: 10.1371/Journal.Pone.0204967  0.56
2018 Taft DH, Liu J, Maldonado-Gomez MX, Akre S, Huda MN, Ahmad SM, Stephensen CB, Mills DA. Bifidobacterial Dominance of the Gut in Early Life and Acquisition of Antimicrobial Resistance. Msphere. 3. PMID 30258040 DOI: 10.1128/mSphere.00441-18  0.28
2018 Jena PK, Sheng L, Nagar N, Wu C, Barile D, Mills DA, Wan YY. The effect of synbiotics and milk oligosaccharides on shaping gut microbiota community structure and NASH treatment. Data in Brief. 19: 1025-1029. PMID 29900399 DOI: 10.1016/j.dib.2018.05.127  0.64
2018 Jena PK, Sheng L, Nagar N, Wu C, Barile D, Mills DA, Wan YY. Synbiotics Bifidobacterium infantis and milk oligosaccharides are effective in reversing cancer-prone nonalcoholic steatohepatitis using western diet-fed FXR knockout mouse models. The Journal of Nutritional Biochemistry. 57: 246-254. PMID 29800811 DOI: 10.1016/j.jnutbio.2018.04.007  0.64
2018 Westreich ST, Treiber ML, Mills DA, Korf I, Lemay DG. SAMSA2: a standalone metatranscriptome analysis pipeline. Bmc Bioinformatics. 19: 175. PMID 29783945 DOI: 10.1186/S12859-018-2189-Z  0.44
2018 Bever CS, Rand AA, Nording M, Taft D, Kalanetra KM, Mills DA, Breck MA, Smilowitz JT, German JB, Hammock BD. Effects of triclosan in breast milk on the infant fecal microbiome. Chemosphere. 203: 467-473. PMID 29635158 DOI: 10.1016/J.Chemosphere.2018.03.186  0.72
2018 Kirmiz N, Robinson RC, Shah IM, Barile D, Mills DA. Milk Glycans and Their Interaction with the Infant-Gut Microbiota. Annual Review of Food Science and Technology. 9: 429-450. PMID 29580136 DOI: 10.1146/annurev-food-030216-030207  0.64
2018 Fricke EM, Elgin TG, Gong H, Reese J, Gibson-Corley KN, Weiss RM, Zimmerman K, Bowdler NC, Kalantera KM, Mills DA, Underwood MA, McElroy SJ. Lipopolysaccharide-induced maternal inflammation induces direct placental injury without alteration in placental blood flow and induces a secondary fetal intestinal injury that persists into adulthood. American Journal of Reproductive Immunology (New York, N.Y. : 1989). PMID 29369434 DOI: 10.1111/aji.12816  0.56
2018 Smilowitz J, Hutton A, Contreras L, Shaw C, Lebrilla C, Frese S, Barile D, German B, Mills D, Underwood MA. Bifidobacterium longum subsp. infantis EVC001 stably restores the infant gut microbiome over the first year of life in breastfed infants. Pediatrics. 142: 163-163. DOI: 10.1542/Peds.142.1_Meetingabstract.163  0.64
2017 Frese SA, Hutton AA, Contreras LN, Shaw CA, Palumbo MC, Casaburi G, Xu G, Davis JCC, Lebrilla CB, Henrick BM, Freeman SL, Barile D, German JB, Mills DA, Smilowitz JT, et al. Persistence of Supplemented Bifidobacterium longum subsp. infantis EVC001 in Breastfed Infants. Msphere. 2. PMID 29242832 DOI: 10.1128/mSphere.00501-17  0.72
2017 Cremonini E, Wang Z, Bettaieb A, Adamo AM, Daveri E, Mills DA, Kalanetra KM, Haj FG, Karakas S, Oteiza PI. (-)-Epicatechin protects the intestinal barrier from high fat diet-induced permeabilization: Implications for steatosis and insulin resistance. Redox Biology. 14: 588-599. PMID 29154190 DOI: 10.1016/j.redox.2017.11.002  0.44
2017 Underwood MA, Davis JCC, Kalanetra KM, Gehlot S, Patole S, Tancredi DJ, Mills DA, Lebrilla CB, Simmer K. Digestion of Human Milk Oligosaccharides by Bifidobacterium breve in the Premature Infant. Journal of Pediatric Gastroenterology and Nutrition. 65: 449-455. PMID 28945208 DOI: 10.1097/Mpg.0000000000001590  0.72
2017 Sheng L, Jena PK, Hu Y, Liu HX, Nagar N, Kalanetra KM, French SW, French SW, Mills DA, Wan YY. Hepatic inflammation caused by dysregulated bile acid synthesis is reversible by butyrate supplementation. The Journal of Pathology. PMID 28892150 DOI: 10.1002/Path.4983  0.44
2017 Garcia-Mazcorro JF, Mills DA, Murphy K, Noratto G. Effect of barley supplementation on the fecal microbiota, caecal biochemistry, and key biomarkers of obesity and inflammation in obese db/db mice. European Journal of Nutrition. PMID 28815303 DOI: 10.1007/S00394-017-1523-Y  0.01
2017 Mills DA. Probiotic nomenclature matters redux: confusion on Bifidobacterium longum subsp. infantis taxonomy persists. Current Medical Research and Opinion. 1. PMID 28812376 DOI: 10.1080/03007995.2017.1359153  0.01
2017 Jena PK, Sheng L, Liu HX, Kalanetra KM, Mirsoian A, Murphy WJ, French SW, Krishnan VV, Mills DA, Wan YY. Western Diet-Induced Dysbiosis in Farnesoid X Receptor Knockout Mice Causes Persistent Hepatic Inflammation after Antibiotic Treatment. The American Journal of Pathology. PMID 28711154 DOI: 10.1016/J.Ajpath.2017.04.019  0.44
2017 Smilowitz JT, Lemay DG, Kalanetra KM, Chin EL, Zivkovic AM, Breck MA, German JB, Mills DA, Slupsky C, Barile D. Tolerability and safety of the intake of bovine milk oligosaccharides extracted from cheese whey in healthy human adults. Journal of Nutritional Science. 6: e6. PMID 28620481 DOI: 10.1017/jns.2017.2  0.72
2017 Sheng L, Jena PK, Liu HX, Kalanetra KM, Gonzalez FJ, French SW, Krishnan VV, Mills DA, Wan YY. Gender Differences in Bile Acids and Microbiota in Relationship with Gender Dissimilarity in Steatosis Induced by Diet and FXR Inactivation. Scientific Reports. 7: 1748. PMID 28496104 DOI: 10.1038/S41598-017-01576-9  0.44
2017 Park D, Xu G, Barboza M, Shah IM, Wong M, Raybould H, Mills DA, Lebrilla CB. Enterocyte glycosylation is responsive to changes in extracellular conditions: Implications for membrane functions. Glycobiology. PMID 28486580 DOI: 10.1093/Glycob/Cwx041  0.72
2017 Lewis ZT, Mills DA. Differential Establishment of Bifidobacteria in the Breastfed Infant Gut. Nestle Nutrition Institute Workshop Series. 88: 149-159. PMID 28346936 DOI: 10.1159/000455399  0.56
2017 Hamilton MK, Ronveaux CC, Rust BM, Newman JW, Hawley M, Barile D, Mills DA, Raybould HE. Prebiotic milk oligosaccharides prevent development of obese phenotype, impairment of gut permeability and microbial dysbiosis in high-fat fed mice. American Journal of Physiology. Gastrointestinal and Liver Physiology. ajpgi.00427.2016. PMID 28280143 DOI: 10.1152/Ajpgi.00427.2016  0.64
2017 Lewis ZT, Sidamonidze K, Tsaturyan V, Tsereteli D, Khachidze N, Pepoyan A, Zhgenti E, Tevzadze L, Manvelyan A, Balayan M, Imnadze P, Torok T, Lemay DG, Mills DA. The Fecal Microbial Community of Breast-fed Infants from Armenia and Georgia. Scientific Reports. 7: 40932. PMID 28150690 DOI: 10.1038/srep40932  0.56
2017 Boudry G, Hamilton MK, Chichlowski M, Wickramasinghe S, Barile D, Kalanetra KM, Mills DA, Raybould HE. Bovine milk oligosaccharides decrease gut permeability and improve inflammation and microbial dysbiosis in diet-induced obese mice. Journal of Dairy Science. PMID 28131576 DOI: 10.3168/Jds.2016-11890  0.64
2017 Davis JC, Lewis ZT, Krishnan S, Bernstein RM, Moore SE, Prentice AM, Mills DA, Lebrilla CB, Zivkovic AM. Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota. Scientific Reports. 7: 40466. PMID 28079170 DOI: 10.1038/Srep40466  0.72
2016 Garrido D, Ruiz-Moyano S, Kirmiz N, Davis JC, Totten SM, Lemay DG, Ugalde JA, German JB, Lebrilla CB, Mills DA. A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596. Scientific Reports. 6: 35045. PMID 27756904 DOI: 10.1038/Srep35045  0.72
2016 Westreich ST, Korf I, Mills DA, Lemay DG. SAMSA: a comprehensive metatranscriptome analysis pipeline. Bmc Bioinformatics. 17: 399. PMID 27687690 DOI: 10.1186/S12859-016-1270-8  0.44
2016 Salcedo J, Frese SA, Mills DA, Barile D. Characterization of porcine milk oligosaccharides during early lactation and their relation to the fecal microbiome. Journal of Dairy Science. PMID 27522435 DOI: 10.3168/Jds.2016-10966  0.64
2016 Awasthi S, Wilken R, Patel F, German JB, Mills DA, Lebrilla CB, Kim K, Freeman SL, Smilowitz JT, Armstrong AW, Maverakis E. Dietary supplementation with Bifidobacterium longum subsp. infantis (B. infantis) in healthy breastfed infants: study protocol for a randomised controlled trial. Trials. 17: 340. PMID 27449926 DOI: 10.1186/S13063-016-1467-1  0.72
2016 Davis JC, Totten SM, Huang JO, Nagshbandi S, Kirmiz N, Garrido DA, Lewis ZT, Wu LD, Smilowitz JT, German JB, Mills DA, Lebrilla CB. Identification of oligosaccharides in feces of breast-fed infants and their correlation with the gut microbial community. Molecular & Cellular Proteomics : McP. PMID 27435585 DOI: 10.1074/Mcp.M116.060665  0.72
2016 Charbonneau MR, Blanton LV, DiGiulio DB, Relman DA, Lebrilla CB, Mills DA, Gordon JI. A microbial perspective of human developmental biology. Nature. 535: 48-55. PMID 27383979 DOI: 10.1038/Nature18845  1
2016 Bokulich NA, Collins TS, Masarweh C, Allen G, Heymann H, Ebeler SE, Mills DA. Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics. Mbio. 7. PMID 27302757 DOI: 10.1128/Mbio.00631-16  0.6
2016 Garcia-Mazcorro JF, Mills D, Noratto G. Molecular exploration of fecal microbiome in quinoa-supplemented obese mice. Fems Microbiology Ecology. PMID 27127197 DOI: 10.1093/Femsec/Fiw089  0.12
2016 Karav S, Le Parc A, Maria Leite Nobrega de Moura Bell J, Frese SA, Kirmiz N, Block DE, Barile D, Mills DA. Oligosaccharides released from milk glycoproteins are selective growth substrates for infant-associated bifidobacteria. Applied and Environmental Microbiology. PMID 27084007 DOI: 10.1128/Aem.00547-16  1
2016 Jeong KH, Israr B, Shoemaker SP, Mills DA, Kim J. Impact of lactic acid and hydrogen ion on the simultaneous fermentation of glucose and xylose by the carbon catabolite derepressed Lactobacillus brevis ATCC 14869. Journal of Microbiology and Biotechnology. PMID 27056470 DOI: 10.4014/jmb.1512.12038  0.72
2016 Garcia-Mazcorro JF, Ivanov I, Mills DA, Noratto G. Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice. Peerj. 4: e1702. PMID 26925326 DOI: 10.7717/Peerj.1702  0.12
2016 Charbonneau MR, O'Donnell D, Blanton LV, Totten SM, Davis JC, Barratt MJ, Cheng J, Guruge J, Talcott M, Bain JR, Muehlbauer MJ, Ilkayeva O, Wu C, Struckmeyer T, Barile D, ... Mills DA, et al. Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition. Cell. PMID 26898329 DOI: 10.1016/J.Cell.2016.01.024  1
2016 Zhao C, Wu Y, Yu H, Shah IM, Li Y, Zeng J, Liu B, Mills DA, Chen X. The one-pot multienzyme (OPME) synthesis of human blood group H antigens and a human milk oligosaccharide (HMOS) with highly active Thermosynechococcus elongatus α1-2-fucosyltransferase. Chemical Communications (Cambridge, England). PMID 26864394 DOI: 10.1039/c5cc10646j  1
2016 Lewis ZT, Davis JC, Smilowitz JT, German JB, Lebrilla CB, Mills DA. The impact of freeze-drying infant fecal samples on measures of their bacterial community profiles and milk-derived oligosaccharide content. Peerj. 4: e1612. PMID 26819854 DOI: 10.7717/Peerj.1612  1
2016 Bokulich NA, Lewis ZT, Boundy-Mills K, Mills DA. A new perspective on microbial landscapes within food production. Current Opinion in Biotechnology. 37: 182-189. PMID 26773388 DOI: 10.1016/j.copbio.2015.12.008  1
2016 Dallas DC, Citerne F, Tian T, Silva VL, Kalanetra KM, Frese SA, Robinson RC, Mills DA, Barile D. Peptidomic analysis reveals proteolytic activity of kefir microorganisms on bovine milk proteins. Food Chemistry. 197: 273-84. PMID 26616950 DOI: 10.1016/J.Foodchem.2015.10.116  0.64
2016 Walker GA, Hjelmeland A, Bokulich NA, Mills DA, Ebeler SE, Bisson LF. Impact of the [GAR+] prion on fermentation and bacterial community composition with saccharomyces cerevisiae UCD932 American Journal of Enology and Viticulture. 67: 296-307. DOI: 10.5344/Ajev.2016.15092  1
2015 Sohn K, Kalanetra KM, Mills DA, Underwood MA. Buccal administration of human colostrum: impact on the oral microbiota of premature infants. Journal of Perinatology : Official Journal of the California Perinatal Association. PMID 26658119 DOI: 10.1038/jp.2015.157  0.56
2015 Lewis ZT, Shani G, Masarweh C, Popovic M, Frese SA, Sela DA, Underwood MA, Mills DA. Validating bifidobacterial species and subspecies identity in commercial probiotic products. Pediatric Research. PMID 26571226 DOI: 10.1038/pr.2015.244  1
2015 Pudlo NA, Urs K, Kumar SS, German JB, Mills DA, Martens EC. Symbiotic Human Gut Bacteria with Variable Metabolic Priorities for Host Mucosal Glycans. Mbio. 6. PMID 26556271 DOI: 10.1128/mBio.01282-15  1
2015 Powell WT, Borghese RA, Kalanetra KM, Mirmiran M, Mills DA, Underwood MA. Probiotic Administration in Infants with Gastroschisis: A Pilot Randomized Placebo-Controlled Trial. Journal of Pediatric Gastroenterology and Nutrition. PMID 26545203 DOI: 10.1097/MPG.0000000000001031  0.56
2015 Garrido D, Ruiz-Moyano S, Lemay DG, Sela DA, German JB, Mills DA. Erratum: Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria. Scientific Reports. 5: 15311. PMID 26522826 DOI: 10.1038/srep15311  0.96
2015 Hutkins RW, Krumbeck JA, Bindels LB, Cani PD, Fahey G, Goh YJ, Hamaker B, Martens EC, Mills DA, Rastal RA, Vaughan E, Sanders ME. Prebiotics: why definitions matter. Current Opinion in Biotechnology. 37: 1-7. PMID 26431716 DOI: 10.1016/J.Copbio.2015.09.001  0.08
2015 Garrido D, Ruiz-Moyano S, Lemay DG, Sela DA, German JB, Mills DA. Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria. Scientific Reports. 5: 13517. PMID 26337101 DOI: 10.1038/srep13517  1
2015 Underwood MA, Gaerlan S, De Leoz ML, Dimapasoc L, Kalanetra KM, Lemay DG, German JB, Mills DA, Lebrilla CB. Human milk oligosaccharides in premature infants: absorption, excretion, and influence on the intestinal microbiota. Pediatric Research. PMID 26322410 DOI: 10.1038/Pr.2015.162  1
2015 Wickramasinghe S, Pacheco AR, Lemay DG, Mills DA. Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells. Bmc Microbiology. 15: 172. PMID 26303932 DOI: 10.1186/s12866-015-0508-3  1
2015 Frese SA, Parker K, Calvert CC, Mills DA. Diet shapes the gut microbiome of pigs during nursing and weaning. Microbiome. 3: 28. PMID 26167280 DOI: 10.1186/S40168-015-0091-8  0.56
2015 Karav S, Parc AL, de Moura Bell JM, Rouquié C, Mills DA, Barile D, Block DE. Kinetic characterization of a novel endo-β-N-acetylglucosaminidase on concentrated bovine colostrum whey to release bioactive glycans. Enzyme and Microbial Technology. 77: 46-53. PMID 26138399 DOI: 10.1016/J.Enzmictec.2015.05.007  0.64
2015 Parc AL, Karav S, Maria Leite Nobrega de Moura Bell J, Frese SA, Liu Y, Mills DA, Block DE, Barile D. A novel endo-β-N-acetylglucosaminidase releases specific N-glycans depending on different reaction conditions. Biotechnology Progress. PMID 26101185 DOI: 10.1002/Btpr.2133  1
2015 Karav S, Maria Leite Nobrega de Moura Bell J, Parc AL, Liu Y, Mills DA, Block DE, Barile D. Characterizing the release of bioactive N-glycans from dairy products by a novel endo-β-N-acetylglucosaminidase. Biotechnology Progress. PMID 26097235 DOI: 10.1002/Btpr.2135  1
2015 Frese SA, Mills DA. Should infants cry over spilled milk? Fecal glycomics as an indicator of a healthy infant gut microbiome. Journal of Pediatric Gastroenterology and Nutrition. 60: 695. PMID 26000886 DOI: 10.1097/Mpg.0000000000000798  1
2015 Bokulich NA, Amiranashvili L, Chitchyan K, Ghazanchyan N, Darbinyan K, Gagelidze N, Sadunishvili T, Goginyan V, Kvesitadze G, Torok T, Mills DA. Microbial biogeography of the transnational fermented milk matsoni. Food Microbiology. 50: 12-9. PMID 25998810 DOI: 10.1016/j.fm.2015.01.018  0.72
2015 Frese SA, Mills DA. Birth of the infant gut microbiome: moms deliver twice! Cell Host & Microbe. 17: 543-4. PMID 25974295 DOI: 10.1016/J.Chom.2015.04.014  0.56
2015 Lewis ZT, Totten SM, Smilowitz JT, Popovic M, Parker E, Lemay DG, Van Tassell ML, Miller MJ, Jin YS, German JB, Lebrilla CB, Mills DA. Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants. Microbiome. 3: 13. PMID 25922665 DOI: 10.1186/S40168-015-0071-Z  1
2015 Kim SR, Nguyen TV, Seo NR, Jung S, An HJ, Mills DA, Kim JH. Comparative proteomics: assessment of biological variability and dataset comparability. Bmc Bioinformatics. 16: 121. PMID 25888384 DOI: 10.1186/S12859-015-0561-9  1
2015 Porcellato D, Johnson ME, Houck K, Skeie SB, Mills DA, Kalanetra KM, Steele JL. Potential of Lactobacillus curvatus LFC1 to produce slits in Cheddar cheese. Food Microbiology. 49: 65-73. PMID 25846916 DOI: 10.1016/j.fm.2015.01.015  1
2015 Subramanian S, Blanton LV, Frese SA, Charbonneau M, Mills DA, Gordon JI. Cultivating healthy growth and nutrition through the gut microbiota. Cell. 161: 36-48. PMID 25815983 DOI: 10.1016/J.Cell.2015.03.013  1
2015 Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA. The soil microbiome influences grapevine-associated microbiota. Mbio. 6. PMID 25805735 DOI: 10.1128/Mbio.02527-14  1
2015 Bokulich NA, Bergsveinson J, Ziola B, Mills DA. Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance. Elife. 4. PMID 25756611 DOI: 10.7554/eLife.04634  0.72
2015 McInnis EA, Kalanetra KM, Mills DA, Maga EA. Analysis of raw goat milk microbiota: Impact of stage of lactation and lysozyme on microbial diversity Food Microbiology. 46: 121-131. PMID 25475275 DOI: 10.1016/j.fm.2014.07.021  1
2015 Pacheco AR, Barile D, Underwood MA, Mills DA. The impact of the milk glycobiome on the neonate gut microbiota. Annual Review of Animal Biosciences. 3: 419-45. PMID 25387230 DOI: 10.1146/annurev-animal-022114-111112  1
2015 Underwood MA, German JB, Lebrilla CB, Mills DA. Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut. Pediatric Research. 77: 229-35. PMID 25303277 DOI: 10.1038/Pr.2014.156  0.72
2015 De Leoz ML, Kalanetra KM, Bokulich NA, Strum JS, Underwood MA, German JB, Mills DA, Lebrilla CB. Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study. Journal of Proteome Research. 14: 491-502. PMID 25300177 DOI: 10.1021/Pr500759E  0.72
2015 Bokulich NA, Bergsveinson J, Ziola B, Mills DA. Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance Elife. 2015: e04634. DOI: 10.7554/eLife.04634  1
2015 Bokulich NA, Swadener M, Sakamoto K, Mills DA, Bisson LF. Sulfur dioxide treatment alters wine microbial diversity and fermentation progression in a dose-dependent fashion American Journal of Enology and Viticulture. 66: 73-79. DOI: 10.5344/Ajev.2014.14096  1
2015 Underwood MA, German JB, Lebrilla CB, Mills DA. Bifidobacterium longum subspecies infantis: Champion colonizer of the infant gut Pediatric Research. 77: 229-235. DOI: 10.1038/pr.2014.156  1
2015 De Leoz MLA, Kalanetra KM, Bokulich NA, Strum JS, Underwood MA, German JB, Mills DA, Lebrilla CB. Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: A proof-of-concept study Journal of Proteome Research. 14: 491-502. DOI: 10.1021/pr500759e  1
2015 Bokulich NA, Amiranashvili L, Chitchyan K, Ghazanchyan N, Darbinyan K, Gagelidze N, Sadunishvili T, Goginyan V, Kvesitadze G, Torok T, Mills DA. Microbial biogeography of the transnational fermented milk matsoni Food Microbiology. 50: 12-19. DOI: 10.1016/j.fm.2015.01.018  1
2015 Karav S, Parc AL, Moura Bell JMLNd, Rouquié C, Mills DA, Barile D, Block DE. Kinetic characterization of a novel endo-β-N-acetylglucosaminidase on concentrated bovine colostrum whey to release bioactive glycans Enzyme and Microbial Technology. 77: 46-53. DOI: 10.1016/j.enzmictec.2015.05.007  1
2015 Frese SA, Mills DA. Birth of the infant gut microbiome: Moms deliver twice! Cell Host and Microbe. 17: 543-544. DOI: 10.1016/j.chom.2015.04.014  1
2014 Choy YY, Quifer-Rada P, Holstege DM, Frese SA, Calvert CC, Mills DA, Lamuela-Raventos RM, Waterhouse AL. Phenolic metabolites and substantial microbiome changes in pig feces by ingesting grape seed proanthocyanidins. Food & Function. 5: 2298-308. PMID 25066634 DOI: 10.1039/C4Fo00325J  1
2014 Huda MN, Lewis Z, Kalanetra KM, Rashid M, Ahmad SM, Raqib R, Qadri F, Underwood MA, Mills DA, Stephensen CB. Stool microbiota and vaccine responses of infants. Pediatrics. 134: e362-72. PMID 25002669 DOI: 10.1542/peds.2013-3937  1
2014 Underwood MA, Arriola J, Gerber CW, Kaveti A, Kalanetra KM, Kananurak A, Bevins CL, Mills DA, Dvorak B. Bifidobacterium longum subsp. infantis in experimental necrotizing enterocolitis: alterations in inflammation, innate immune response, and the microbiota. Pediatric Research. 76: 326-33. PMID 25000347 DOI: 10.1038/Pr.2014.102  0.56
2014 Bokulich NA, Ohta M, Lee M, Mills DA. Indigenous bacteria and fungi drive traditional kimoto sake fermentations. Applied and Environmental Microbiology. 80: 5522-9. PMID 24973064 DOI: 10.1128/AEM.00663-14  0.72
2014 Tsuei J, Chau T, Mills D, Wan YJ. Bile acid dysregulation, gut dysbiosis, and gastrointestinal cancer. Experimental Biology and Medicine (Maywood, N.J.). 239: 1489-504. PMID 24951470 DOI: 10.1177/1535370214538743  1
2014 Smilowitz JT, Lebrilla CB, Mills DA, German JB, Freeman SL. Breast milk oligosaccharides: structure-function relationships in the neonate. Annual Review of Nutrition. 34: 143-69. PMID 24850388 DOI: 10.1146/Annurev-Nutr-071813-105721  1
2014 Ozcan S, Kim BJ, Ro G, Kim JH, Bereuter TL, Reiter C, Dimapasoc L, Garrido D, Mills DA, Grimm R, Lebrilla CB, An HJ. Glycosylated proteins preserved over millennia: N-glycan analysis of Tyrolean Iceman, Scythian Princess and Warrior Scientific Reports. 4. PMID 24831691 DOI: 10.1038/Srep04963  1
2014 Lee H, Garrido D, Mills DA, Barile D. Hydrolysis of milk gangliosides by infant-gut associated bifidobacteria determined by microfluidic chips and high-resolution mass spectrometry. Electrophoresis. 35: 1742-50. PMID 24519724 DOI: 10.1002/elps.201300653  0.72
2014 Sela DA, Mills DA. The marriage of nutrigenomics with the microbiome: the case of infant-associated bifidobacteria and milk. The American Journal of Clinical Nutrition. 99: 697S-703S. PMID 24452239 DOI: 10.3945/ajcn.113.071795  0.96
2014 Bokulich NA, Thorngate JH, Richardson PM, Mills DA. Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate. Proceedings of the National Academy of Sciences of the United States of America. 111: E139-48. PMID 24277822 DOI: 10.1073/pnas.1317377110  0.72
2014 Underwood MA, Kalanetra KM, Bokulich NA, Mirmiran M, Barile D, Tancredi DJ, German JB, Lebrilla CB, Mills DA. Prebiotic oligosaccharides in premature infants. Journal of Pediatric Gastroenterology and Nutrition. 58: 352-60. PMID 24135979 DOI: 10.1097/Mpg.0000000000000211  1
2014 Ravel J, Blaser MJ, Braun J, Brown E, Bushman FD, Chang EB, Davies J, Dewey KG, Dinan T, Dominguez-Bello M, Erdman SE, Finlay BB, Garrett WS, Huffnagle GB, Huttenhower C, ... Mills DA, et al. Human microbiome science: Vision for the future, Bethesda, MD, July 24 to 26, 2013 Microbiome. 2. DOI: 10.1186/2049-2618-2-16  1
2013 Peacock KS, Ruhaak LR, Tsui MK, Mills DA, Lebrilla CB. Isomer-specific consumption of galactooligosaccharides by bifidobacterial species. Journal of Agricultural and Food Chemistry. 61: 12612-9. PMID 24313277 DOI: 10.1021/Jf403789R  1
2013 Underwood MA, Kalanetra KM, Bokulich NA, Lewis ZT, Mirmiran M, Tancredi DJ, Mills DA. A comparison of two probiotic strains of bifidobacteria in premature infants. The Journal of Pediatrics. 163: 1585-1591.e9. PMID 23993139 DOI: 10.1016/j.jpeds.2013.07.017  1
2013 Ruiz-Moyano S, Totten SM, Garrido DA, Smilowitz JT, German JB, Lebrilla CB, Mills DA. Variation in consumption of human milk oligosaccharides by infant gut-associated strains of Bifidobacterium breve. Applied and Environmental Microbiology. 79: 6040-9. PMID 23892749 DOI: 10.1128/Aem.01843-13  0.72
2013 Bokulich NA, Ohta M, Richardson PM, Mills DA. Monitoring Seasonal Changes in Winery-Resident Microbiota. Plos One. 8: e66437. PMID 23840468 DOI: 10.1371/journal.pone.0066437  0.72
2013 Bokulich NA, Mills DA. Facility-specific "house" microbiome drives microbial landscapes of artisan cheesemaking plants. Applied and Environmental Microbiology. 79: 5214-23. PMID 23793641 DOI: 10.1128/AEM.00934-13  0.72
2013 Bokulich NA, Mills DA, Underwood MA. Surface microbes in the neonatal intensive care unit: changes with routine cleaning and over time. Journal of Clinical Microbiology. 51: 2617-24. PMID 23740726 DOI: 10.1128/JCM.00898-13  1
2013 Ellis CL, Bokulich NA, Kalanetra KM, Mirmiran M, Elumalai J, Haapanen L, Schegg T, Rutledge JC, Raff G, Mills DA, Underwood MA. Probiotic administration in congenital heart disease: A pilot study Journal of Perinatology. 33: 691-697. PMID 23599119 DOI: 10.1038/jp.2013.41  1
2013 Kim JH, An HJ, Garrido D, German JB, Lebrilla CB, Mills DA. Proteomic analysis of Bifidobacterium longum subsp. infantis reveals the metabolic insight on consumption of prebiotics and host glycans. Plos One. 8: e57535. PMID 23469017 DOI: 10.1371/Journal.Pone.0057535  1
2013 De Leoz ML, Wu S, Strum JS, Niñonuevo MR, Gaerlan SC, Mirmiran M, German JB, Mills DA, Lebrilla CB, Underwood MA. A quantitative and comprehensive method to analyze human milk oligosaccharide structures in the urine and feces of infants. Analytical and Bioanalytical Chemistry. 405: 4089-105. PMID 23468138 DOI: 10.1007/S00216-013-6817-1  1
2013 Garrido D, Dallas DC, Mills DA. Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications. Microbiology (Reading, England). 159: 649-64. PMID 23460033 DOI: 10.1099/mic.0.064113-0  0.72
2013 Bokulich NA, Mills DA. Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities. Applied and Environmental Microbiology. 79: 2519-26. PMID 23377949 DOI: 10.1128/AEM.03870-12  0.72
2013 Lewis ZT, Bokulich NA, Kalanetra KM, Ruiz-Moyano S, Underwood MA, Mills DA. Use of bifidobacterial specific terminal restriction fragment length polymorphisms to complement next generation sequence profiling of infant gut communities. Anaerobe. 19: 62-9. PMID 23261904 DOI: 10.1016/j.anaerobe.2012.12.005  1
2013 Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods. 10: 57-9. PMID 23202435 DOI: 10.1038/Nmeth.2276  1
2013 Garrido D, Ruiz-Moyano S, Jimenez-Espinoza R, Eom HJ, Block DE, Mills DA. Utilization of galactooligosaccharides by Bifidobacterium longum subsp. infantis isolates. Food Microbiology. 33: 262-70. PMID 23200660 DOI: 10.1016/J.Fm.2012.10.003  1
2013 Kim J, An HJ, Garrido D, German JB, Lebrilla CB, Mills DA. Schematic diagram of the potential metabolic pathways for different prebiotic consumption in B. infantis. Plos One. DOI: 10.1371/Journal.Pone.0057535.G006  0.72
2012 Ma BW, Bokulich NA, Castillo PA, Kananurak A, Underwood MA, Mills DA, Bevins CL. Routine habitat change: a source of unrecognized transient alteration of intestinal microbiota in laboratory mice. Plos One. 7: e47416. PMID 23082164 DOI: 10.1371/Journal.Pone.0047416  1
2012 De Leoz ML, Gaerlan SC, Strum JS, Dimapasoc LM, Mirmiran M, Tancredi DJ, Smilowitz JT, Kalanetra KM, Mills DA, German JB, Lebrilla CB, Underwood MA. Lacto-N-tetraose, fucosylation, and secretor status are highly variable in human milk oligosaccharides from women delivering preterm. Journal of Proteome Research. 11: 4662-72. PMID 22900748 DOI: 10.1021/Pr3004979  1
2012 Strum JS, Kim J, Wu S, De Leoz ML, Peacock K, Grimm R, German JB, Mills DA, Lebrilla CB. Identification and accurate quantitation of biological oligosaccharide mixtures. Analytical Chemistry. 84: 7793-801. PMID 22897719 DOI: 10.1021/Ac301128S  1
2012 Bokulich NA, Mills DA. Next-generation approaches to the microbial ecology of food fermentations. Bmb Reports. 45: 377-89. PMID 22831972  0.72
2012 Garrido D, Nwosu C, Ruiz-Moyano S, Aldredge D, German JB, Lebrilla CB, Mills DA. Endo-β-N-acetylglucosaminidases from infant gut-associated bifidobacteria release complex N-glycans from human milk glycoproteins. Molecular & Cellular Proteomics : McP. 11: 775-85. PMID 22745059 DOI: 10.1074/Mcp.M112.018119  0.72
2012 Gordon JI, Dewey KG, Mills DA, Medzhitov RM. The human gut microbiota and undernutrition. Science Translational Medicine. 4: 137ps12. PMID 22674549 DOI: 10.1126/Scitranslmed.3004347  1
2012 Garrido D, Barile D, Mills DA. A molecular basis for bifidobacterial enrichment in the infant gastrointestinal tract. Advances in Nutrition (Bethesda, Md.). 3: 415S-21S. PMID 22585920 DOI: 10.3945/an.111.001586  0.72
2012 Garrido D, Ruiz-Moyano S, Mills DA. Release and utilization of N-acetyl-D-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis. Anaerobe. 18: 430-5. PMID 22579845 DOI: 10.1016/j.anaerobe.2012.04.012  0.72
2012 Bokulich NA, Joseph CM, Allen G, Benson AK, Mills DA. Next-generation sequencing reveals significant bacterial diversity of botrytized wine. Plos One. 7: e36357. PMID 22563494 DOI: 10.1371/Journal.Pone.0036357  1
2012 Bokulich NA, Bamforth CW, Mills DA. Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale. Plos One. 7: e35507. PMID 22530036 DOI: 10.1371/journal.pone.0035507  1
2012 Bokulich NA, Mills DA. Differentiation of mixed lactic acid bacteria communities in beverage fermentations using targeted terminal restriction fragment length polymorphism. Food Microbiology. 31: 126-32. PMID 22475950 DOI: 10.1016/j.fm.2012.02.007  0.72
2012 Chichlowski M, De Lartigue G, German JB, Raybould HE, Mills DA. Bifidobacteria isolated from infants and cultured on human milk oligosaccharides affect intestinal epithelial function. Journal of Pediatric Gastroenterology and Nutrition. 55: 321-7. PMID 22383026 DOI: 10.1097/Mpg.0B013E31824Fb899  1
2012 Ruiz-Moyano S, Tao N, Underwood MA, Mills DA. Rapid discrimination of Bifidobacterium animalis subspecies by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Food Microbiology. 30: 432-7. PMID 22365357 DOI: 10.1016/J.Fm.2011.12.012  1
2012 Sela DA, Garrido D, Lerno L, Wu S, Tan K, Eom HJ, Joachimiak A, Lebrilla CB, Mills DA. Bifidobacterium longum subsp. infantis ATCC 15697 α-fucosidases are active on fucosylated human milk oligosaccharides. Applied and Environmental Microbiology. 78: 795-803. PMID 22138995 DOI: 10.1128/Aem.06762-11  0.96
2012 Bokulich NA, Bamforth CW, Mills DA. A review of molecular methods for microbial community profiling of beer and wine Journal of the American Society of Brewing Chemists. 70: 150-162. DOI: 10.1094/ASBCJ-2012-0709-01  1
2011 Chichlowski M, German JB, Lebrilla CB, Mills DA. The influence of milk oligosaccharides on microbiota of infants: opportunities for formulas. Annual Review of Food Science and Technology. 2: 331-51. PMID 22129386 DOI: 10.1146/Annurev-Food-022510-133743  1
2011 Marcobal A, Barboza M, Sonnenburg ED, Pudlo N, Martens EC, Desai P, Lebrilla CB, Weimer BC, Mills DA, German JB, Sonnenburg JL. Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. Cell Host & Microbe. 10: 507-14. PMID 22036470 DOI: 10.1016/J.Chom.2011.10.007  1
2011 Garrido D, Kim JH, German JB, Raybould HE, Mills DA. Oligosaccharide binding proteins from Bifidobacterium longum subsp. infantis reveal a preference for host glycans. Plos One. 6: e17315. PMID 21423604 DOI: 10.1371/Journal.Pone.0017315  0.88
2011 Sela DA, Li Y, Lerno L, Wu S, Marcobal AM, German JB, Chen X, Lebrilla CB, Mills DA. An infant-associated bacterial commensal utilizes breast milk sialyloligosaccharides. The Journal of Biological Chemistry. 286: 11909-18. PMID 21288901 DOI: 10.1074/Jbc.M110.193359  0.96
2011 Zivkovic AM, German JB, Lebrilla CB, Mills DA. Human milk glycobiome and its impact on the infant gastrointestinal microbiota. Proceedings of the National Academy of Sciences of the United States of America. 108: 4653-8. PMID 20679197 DOI: 10.1073/Pnas.1000083107  0.72
2010 Turroni F, Bottacini F, Foroni E, Mulder I, Kim JH, Zomer A, Sánchez B, Bidossi A, Ferrarini A, Giubellini V, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Fitzgerald GF, ... Mills D, et al. Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging Proceedings of the National Academy of Sciences of the United States of America. 107: 19514-19519. PMID 20974960 DOI: 10.1073/pnas.1011100107  1
2010 Kim JH, Block DE, Mills DA. Simultaneous consumption of pentose and hexose sugars: an optimal microbial phenotype for efficient fermentation of lignocellulosic biomass. Applied Microbiology and Biotechnology. 88: 1077-85. PMID 20838789 DOI: 10.1007/S00253-010-2839-1  1
2010 LoCascio RG, Desai P, Sela DA, Weimer BC, Mills DA. Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. Applied and Environmental Microbiology. 76: 7373-7381. PMID 20802066 DOI: 10.1128/Aem.00675-10  0.96
2010 Kim JH, Block DE, Shoemaker SP, Mills DA. Atypical ethanol production by carbon catabolite derepressed lactobacilli. Bioresource Technology. 101: 8790-7. PMID 20663662 DOI: 10.1016/J.Biortech.2010.06.087  1
2010 Sela DA, Mills DA. Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides. Trends in Microbiology. 18: 298-307. PMID 20409714 DOI: 10.1016/j.tim.2010.03.008  0.96
2010 Marcobal A, Barboza M, Froehlich JW, Block DE, German JB, Lebrilla CB, Mills DA. Consumption of human milk oligosaccharides by gut-related microbes. Journal of Agricultural and Food Chemistry. 58: 5334-40. PMID 20394371 DOI: 10.1021/Jf9044205  1
2010 Kim JH, Block DE, Shoemaker SP, Mills DA. Conversion of rice straw to bio-based chemicals: an integrated process using Lactobacillus brevis. Applied Microbiology and Biotechnology. 86: 1375-85. PMID 20084509 DOI: 10.1007/S00253-009-2407-8  1
2009 Locascio RG, Niñonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla CB, Mills DA. A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides. Microbial Biotechnology. 2: 333-42. PMID 21261928 DOI: 10.1111/J.1751-7915.2008.00072.X  1
2009 Barboza M, Sela DA, Pirim C, Locascio RG, Freeman SL, German JB, Mills DA, Lebrilla CB. Glycoprofiling bifidobacterial consumption of galacto-oligosaccharides by mass spectrometry reveals strain-specific, preferential consumption of glycans. Applied and Environmental Microbiology. 75: 7319-25. PMID 19801485 DOI: 10.1128/Aem.00842-09  1
2009 Ventura M, Turroni F, Lima-Mendez G, Foroni E, Zomer A, Duranti S, Giubellini V, Bottacini F, Horvath P, Barrangou R, Sela DA, Mills DA, van Sinderen D. Comparative analyses of prophage-like elements present in bifidobacterial genomes. Applied and Environmental Microbiology. 75: 6929-36. PMID 19734330 DOI: 10.1128/AEM.01112-09  0.96
2009 Oddone GM, Mills DA, Block DE. A dynamic, genome-scale flux model of Lactococcus lactis to increase specific recombinant protein expression. Metabolic Engineering. 11: 367-81. PMID 19666133 DOI: 10.1016/J.Ymben.2009.07.007  1
2009 Oddone GM, Mills DA, Block DE. Dual inducible expression of recombinant GFP and targeted antisense RNA in Lactococcus lactis. Plasmid. 62: 108-18. PMID 19523486 DOI: 10.1016/J.Plasmid.2009.06.002  1
2009 Kim JH, Shoemaker SP, Mills DA. Relaxed control of sugar utilization in Lactobacillus brevis. Microbiology (Reading, England). 155: 1351-9. PMID 19332836 DOI: 10.1099/mic.0.024653-0  1
2009 Underwood MA, Salzman NH, Bennett SH, Barman M, Mills DA, Marcobal A, Tancredi DJ, Bevins CL, Sherman MP. A randomized placebo-controlled comparison of 2 prebiotic/probiotic combinations in preterm infants: impact on weight gain, intestinal microbiota, and fecal short-chain fatty acids. Journal of Pediatric Gastroenterology and Nutrition. 48: 216-25. PMID 19179885 DOI: 10.1097/Mpg.0B013E31818De195  1
2009 Oddone GM, Mills DA, Block DE. Incorporation of nisI-mediated nisin immunity improves vector-based nisin-controlled gene expression in lactic acid bacteria. Plasmid. 61: 151-8. PMID 19141301 DOI: 10.1016/J.Plasmid.2008.12.001  1
2009 Zhang G, Mills DA, Block DE. Development of chemically defined media supporting high-cell-density growth of lactococci, enterococci, and streptococci. Applied and Environmental Microbiology. 75: 1080-7. PMID 19074601 DOI: 10.1128/Aem.01416-08  1
2008 Sela DA, Chapman J, Adeuya A, Kim JH, Chen F, Whitehead TR, Lapidus A, Rokhsar DS, Lebrilla CB, German JB, Price NP, Richardson PM, Mills DA. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proceedings of the National Academy of Sciences of the United States of America. 105: 18964-9. PMID 19033196 DOI: 10.1073/Pnas.0809584105  1
2008 German JB, Freeman SL, Lebrilla CB, Mills DA. Human milk oligosaccharides: evolution, structures and bioselectivity as substrates for intestinal bacteria. Nestlé Nutrition Workshop Series. Paediatric Programme. 62: 205-18; discussion 2. PMID 18626202 DOI: 10.1159/000146322  0.72
2008 Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, Polouchine NN, Richardson PM, Shakhova VV, Slesarev AI, Weimer B, O'Sullivan DJ. Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth. Bmc Genomics. 9: 247. PMID 18505588 DOI: 10.1186/1471-2164-9-247  1
2008 Marcobal A, Underwood MA, Mills DA. Rapid determination of the bacterial composition of commercial probiotic products by terminal restriction fragment length polymorphism analysis Journal of Pediatric Gastroenterology and Nutrition. 46: 608-611. PMID 18493222 DOI: 10.1097/MPG.0b013e3181660694  1
2008 Niñonuevo MR, Perkins PD, Francis J, Lamotte LM, LoCascio RG, Freeman SL, Mills DA, German JB, Grimm R, Lebrilla CB. Daily variations in oligosaccharides of human milk determined by microfluidic chips and mass spectrometry. Journal of Agricultural and Food Chemistry. 56: 618-26. PMID 18088092 DOI: 10.1021/Jf071972U  1
2008 Seipert RR, Barboza M, Niñonuevo MR, LoCascio RG, Mills DA, Freeman SL, German JB, Lebrilla CB. Analysis and quantitation of fructooligosaccharides using matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 80: 159-65. PMID 18044961 DOI: 10.1021/Ac7017298  1
2008 Marcobal AM, Sela DA, Wolf YI, Makarova KS, Mills DA. Role of hypermutability in the evolution of the genus Oenococcus. Journal of Bacteriology. 190: 564-70. PMID 17993526 DOI: 10.1128/JB.01457-07  0.96
2008 Niñonuevo MR, Perkins PD, Francis J, Lamotte LM, LoCascio RG, Freeman SL, Mills DA, German JB, Grimm R, Lebrilla CB. Dally variations in oligosaccharides of human milk determined by microfluidic chips and mass spectrometry (Journal of the Agricultural and Food Chemistry (2008) 56, (618)) Journal of Agricultural and Food Chemistry. 56: 4854. DOI: 10.1021/Jf800912V  1
2007 Ward RE, Niñonuevo M, Mills DA, Lebrilla CB, German JB. In vitro fermentability of human milk oligosaccharides by several strains of bifidobacteria. Molecular Nutrition & Food Research. 51: 1398-405. PMID 17966141 DOI: 10.1002/Mnfr.200700150  1
2007 LoCascio RG, Ninonuevo MR, Freeman SL, Sela DA, Grimm R, Lebrilla CB, Mills DA, German JB. Glycoprofiling of bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation. Journal of Agricultural and Food Chemistry. 55: 8914-9. PMID 17915960 DOI: 10.1021/Jf0710480  1
2007 Kim JH, Mills DA. Improvement of a nisin-inducible expression vector for use in lactic acid bacteria. Plasmid. 58: 275-83. PMID 17624430 DOI: 10.1016/j.plasmid.2007.05.004  0.88
2007 Sela DA, Rawsthorne H, Mills DA. Characterization of the lactococcal group II intron target site in its native host. Plasmid. 58: 127-39. PMID 17408740 DOI: 10.1016/j.plasmid.2007.02.003  0.96
2007 Ninonuevo MR, Ward RE, LoCascio RG, German JB, Freeman SL, Barboza M, Mills DA, Lebrilla CB. Methods for the quantitation of human milk oligosaccharides in bacterial fermentation by mass spectrometry. Analytical Biochemistry. 361: 15-23. PMID 17181994 DOI: 10.1016/J.Ab.2006.11.010  1
2007 Oddone GM, Lan CQ, Rawsthorne H, Mills DA, Block DE. Optimization of fed-batch production of the model recombinant protein GFP in Lactococcus lactis. Biotechnology and Bioengineering. 96: 1127-38. PMID 17117427 DOI: 10.1002/Bit.21192  1
2006 Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, ... ... Mills D, et al. Comparative genomics of the lactic acid bacteria. Proceedings of the National Academy of Sciences of the United States of America. 103: 15611-6. PMID 17030793 DOI: 10.1073/Pnas.0607117103  1
2006 Rawsthorne H, Turner KN, Mills DA. Multicopy integration of heterologous genes, using the lactococcal group II intron targeted to bacterial insertion sequences Applied and Environmental Microbiology. 72: 6088-6093. PMID 16957233 DOI: 10.1128/AEM.02992-05  1
2006 Lan CQ, Oddone G, Mills DA, Block DE. Kinetics of Lactococcus lactis growth and metabolite formation under aerobic and anaerobic conditions in the presence or absence of hemin. Biotechnology and Bioengineering. 95: 1070-80. PMID 16807924 DOI: 10.1002/Bit.21070  1
2006 Ward RE, Niñonuevo M, Mills DA, Lebrilla CB, German JB. In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri. Applied and Environmental Microbiology. 72: 4497-9. PMID 16751577 DOI: 10.1128/Aem.02515-05  1
2006 LoCascio RG, Mills DA, Waterhouse AL. Reduction of catechin, rutin, and quercetin levels by interaction with food-related microorganisms in a resting state Journal of the Science of Food and Agriculture. 86: 2105-2112. DOI: 10.1002/Jsfa.2583  1
2005 Neeley ET, Phister TG, Mills DA. Differential real-time PCR assay for enumeration of lactic acid bacteria in wine. Applied and Environmental Microbiology. 71: 8954-7. PMID 16332898 DOI: 10.1128/Aem.71.12.8954-8957.2005  1
2003 Phister TG, Mills DA. Real-time PCR assay for detection and enumeration of Dekkera bruxellensis in wine. Applied and Environmental Microbiology. 69: 7430-4. PMID 14660395 DOI: 10.1128/Aem.69.12.7430-7434.2003  1
2003 Marshall MN, Cocolin L, Mills DA, VanderGheynst JS. Evaluation of PCR primers for denaturing gradient gel electrophoresis analysis of fungal communities in compost Journal of Applied Microbiology. 95: 934-948. PMID 14633021 DOI: 10.1046/J.1365-2672.2003.02062.X  1
2003 Frazier CL, San Filippo J, Lambowitz AM, Mills DA. Genetic manipulation of Lactococcus lactis by using targeted group II introns: generation of stable insertions without selection. Applied and Environmental Microbiology. 69: 1121-8. PMID 12571038 DOI: 10.1128/Aem.69.2.1121-1128.2003  1
2001 Guilhabert MR, Hoffman LM, Mills DA, Kirkpatrick BC. Transposon mutagenesis of Xylella fastidiosa by electroporation of Tn5 synaptic complexes. Molecular Plant-Microbe Interactions : Mpmi. 14: 701-6. PMID 11386365 DOI: 10.1094/Mpmi.2001.14.6.701  1
2000 Cocolin L, Bisson LF, Mills DA. Direct profiling of the yeast dynamics in wine fermentations Fems Microbiology Letters. 189: 81-87. PMID 10913870 DOI: 10.1111/J.1574-6968.2000.Tb09210.X  1
1998 Cousineau B, Smith D, Lawrence-Cavanagh S, Mueller JE, Yang J, Mills D, Manias D, Dunny G, Lambowitz AM, Belfort M. Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous DNA recombination Cell. 94: 451-462. PMID 9727488 DOI: 10.1016/S0092-8674(00)81586-X  1
1998 Mills DA, Phister TG, Dunny GM, McKay LL. An origin of transfer (oriT) on the conjugative element pRS01 from Lactococcus lactis subsp. lactis ML3. Applied and Environmental Microbiology. 64: 1541-4. PMID 9546191 DOI: 10.1128/Aem.64.4.1541-1544.1998  1
1997 Mills DA, Manias DA, McKay LL, Dunny GM. Homing of a group II intron from Lactococcus lactis subsp. lactis ML3 Journal of Bacteriology. 179: 6107-6111. PMID 9324259 DOI: 10.1128/Jb.179.19.6107-6111.1997  1
1996 Mills DA, Mckay LL, Dunny GM. Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci Journal of Bacteriology. 178: 3531-3538. PMID 8655550 DOI: 10.1128/Jb.178.12.3531-3538.1996  1
1994 Mills DA, Choi CK, Dunny GM, McKay LL. Genetic analysis of regions of the Lactococcus lactis subsp. lactis plasmid pRS01 involved in conjugative transfer. Applied and Environmental Microbiology. 60: 4413-20. PMID 7811081 DOI: 10.1128/Aem.60.12.4413-4420.1994  1
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