Jason Cole - Publications

2008-2012 University of California, San Diego, La Jolla, CA 

133 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lovey A, Krel M, Borchardt A, Brady T, Cole JN, Do QQ, Fortier J, Hough G, Jiang W, Noncovich A, Tari L, Zhao Q, Balkovec JM, Zhao Y, Perlin DS. Development of novel immunoprophylactic agents against multidrug resistant Gram-negative bacterial infections. Antimicrobial Agents and Chemotherapy. AAC0098521. PMID 34370589 DOI: 10.1128/AAC.00985-21  1
2021 Tosstorff A, Cole JC, Bartelt R, Kuhn B. Augmenting structure-based design with experimental protein-ligand interaction data: molecular recognition, interactive visualization and rescoring. Chemmedchem. PMID 34342128 DOI: 10.1002/cmdc.202100387  1
2021 Jones CD, Hickman JE, Rumbold ST, Walton J, Lamboll RD, Skeie RB, Fiedler S, Forster PM, Rogelj J, Abe M, Botzet M, Calvin K, Cassou C, Cole JNS, Davini P, et al. The Climate Response to Emissions Reductions Due to COVID-19: Initial Results From CovidMIP. Geophysical Research Letters. 48: e2020GL091883. PMID 34149115 DOI: 10.1029/2020GL091883  1
2021 Stanzione F, Giangreco I, Cole JC. Use of molecular docking computational tools in drug discovery. Progress in Medicinal Chemistry. 60: 273-343. PMID 34147204 DOI: 10.1016/bs.pmch.2021.01.004  1
2021 Fyfe JC, Kharin VV, Santer BD, Cole JNS, Gillett NP. Significant impact of forcing uncertainty in a large ensemble of climate model simulations. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34074753 DOI: 10.1073/pnas.2016549118  0.01
2020 Awan MU, Bath K, Chowdhuri N, Chiranjeevi S, Mumtaz M, Tahir H, Omar B, Cole J. Transcatheter Coil Embolization of Iatrogenic Aorto-Right Atrial Fistula. Journal of Medical Cases. 11: 97-99. PMID 34434374 DOI: 10.14740/jmc3448  1
2020 Widdifield CM, Farrell JD, Cole JC, Howard JAK, Hodgkinson P. Resolving alternative organic crystal structures using density functional theory and NMR chemical shifts. Chemical Science. 11: 2987-2992. PMID 34122800 DOI: 10.1039/c9sc04964a  1
2020 Tosstorff A, Cole JC, Taylor R, Harris SF, Kuhn B. Identification of Noncompetitive Protein-Ligand Interactions for Structural Optimization. Journal of Chemical Information and Modeling. PMID 33085891 DOI: 10.1021/acs.jcim.0c00858  1
2020 Watson C, Barlev A, Cole JC, Trivedi B. Qualitative Findings on the Impact of Disease in Epstein-Barr Virus-Driven Post-Transplant Lymphoproliferative Disease Patients, as Measured by EQ-5D, SF-36, and the FACT-LYM. Oncology and Therapy. PMID 33052502 DOI: 10.1007/s40487-020-00131-3  0.01
2020 Stuijfzand WJ, van Rosendael AR, Lin FY, Chang HJ, van den Hoogen IJ, Gianni U, Choi JH, Doh JH, Her AY, Koo BK, Nam CW, Park HB, Shin SH, Cole J, Gimelli A, et al. Stress Myocardial Perfusion Imaging vs Coronary Computed Tomographic Angiography for Diagnosis of Invasive Vessel-Specific Coronary Physiology: Predictive Modeling Results From the Computed Tomographic Evaluation of Atherosclerotic Determinants of Myocardial Ischemia (CREDENCE) Trial. Jama Cardiology. PMID 32822476 DOI: 10.1001/jamacardio.2020.3409  1
2020 Baskaran L, Ying X, Xu Z, Al'Aref SJ, Lee BC, Lee SE, Danad I, Park HB, Bathina R, Baggiano A, Beltrama V, Cerci R, Choi EY, Choi JH, Choi SY, ... Cole J, et al. Machine learning insight into the role of imaging and clinical variables for the prediction of obstructive coronary artery disease and revascularization: An exploratory analysis of the CONSERVE study. Plos One. 15: e0233791. PMID 32584909 DOI: 10.1371/journal.pone.0233791  1
2020 Curran PR, Radoux C, Smilova MD, Sykes R, Higueruelo A, Bradley A, Marsden BD, Spring DR, Blundell TL, Leach AR, Pitt WR, Cole JC. Hotspots API: A Python Package for the Detection of Small Molecule Binding Hotspots and Application to Structure-Based Drug Design. Journal of Chemical Information and Modeling. PMID 32207937 DOI: 10.1021/acs.jcim.9b00996  0.01
2019 Kuhn B, Gilberg E, Taylor R, Cole J, Korb O. How Significant Are Unusual Protein-Ligand Interactions? Insights from Database Mining. Journal of Medicinal Chemistry. PMID 31730345 DOI: 10.1021/acs.jmedchem.9b01545  1
2019 Cole JC, Wiggin S, Stanzione F. New insights and innovation from a million crystal structures in the Cambridge Structural Database. Structural Dynamics (Melville, N.Y.). 6: 054301. PMID 31489338 DOI: 10.1063/1.5116878  1
2019 Cole JM, Salavitabar A, Armstrong AK, Berman DP. Use of the Gore Viabahn VBX balloon-expandable endoprosthesis in the congenital heart disease population. Catheterization and Cardiovascular Interventions : Official Journal of the Society For Cardiac Angiography & Interventions. PMID 31276274 DOI: 10.1002/ccd.28389  0.01
2019 Levin J, Borchardt A, Lam T, Jiang W, Chen Z, Fortier J, Akers-Rodriguez S, Amundson K, Donatelli J, Döhrmann S, Cole J, Tari L. 689. Therapeutic Efficacy of CB-012, a Novel Cloudbreak Antiviral Fc-Conjugate (AVC) in Lethal Mouse Models of Influenza A (H1N1) and Influenza B (Victoria) Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz360.757  1
2018 Chang HJ, Lin FY, Gebow D, An HY, Andreini D, Bathina R, Baggiano A, Beltrama V, Cerci R, Choi EY, Choi JH, Choi SY, Chung N, Cole J, Doh JH, et al. Selective Referral Using CCTA Versus Direct Referral for Individuals Referred to Invasive Coronary Angiography for Suspected CAD: A Randomized, Controlled, Open-Label Trial. Jacc. Cardiovascular Imaging. PMID 30553687 DOI: 10.1016/j.jcmg.2018.09.018  1
2018 Patel P, Roberts R, Cole J, Stalling M, Nicol K, Hor K, Bowman J, Setty B. A Rare Case of an Intracardiac Myoepithelial Carcinoma in an Infant. Journal of Pediatric Hematology/Oncology. PMID 30531598 DOI: 10.1097/MPH.0000000000001343  0.01
2018 Tahir H, Ahmad S, Awan MU, Omar B, Glass J, Cole J. Anomalous Origin of Left Anterior Descending Artery and Left Circumflex Artery from Right Coronary Sinus with Malignant Left Anterior Descending Artery Course: Role of Coronary CT Angiography Derived Fractional Flow Reserve in Decision Making. Cureus. 10: e3220. PMID 30405995 DOI: 10.7759/cureus.3220  0.01
2018 Addicoat M, Adjiman CS, Arhangelskis M, Beran GJO, Bowskill D, Brandenburg JG, Braun DE, Burger V, Cole J, Cruz-Cabeza AJ, Day GM, Deringer VL, Guo R, Hare A, Helfferich J, et al. Crystal structure evaluation: calculating relative stabilities and other criteria: general discussion. Faraday Discussions. PMID 30302459 DOI: 10.1039/C8Fd90031K  1
2018 Adjiman CS, Brandenburg JG, Braun DE, Cole J, Collins C, Cooper AI, Cruz-Cabeza AJ, Day GM, Dudek M, Hare A, Iuzzolino L, McKay D, Mitchell JBO, Mohamed S, Neelamraju S, et al. Applications of crystal structure prediction - organic molecular structures: general discussion. Faraday Discussions. PMID 30285020 DOI: 10.1039/C8Fd90032A  1
2018 Thomas JL, Ridner M, Cole JH, Chambers JW, Bokhari S, Yannopoulos D, Kern M, Wilson RF, Budoff MJ. The clinical evaluation of the CADence device in the acoustic detection of coronary artery disease. The International Journal of Cardiovascular Imaging. PMID 29936668 DOI: 10.1007/s10554-018-1403-4  1
2018 Cole JM, Symes DR, Lopes NC, Wood JC, Poder K, Alatabi S, Botchway SW, Foster PS, Gratton S, Johnson S, Kamperidis C, Kononenko O, De Lazzari M, Palmer CAJ, Rusby D, et al. High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source. Proceedings of the National Academy of Sciences of the United States of America. PMID 29871946 DOI: 10.1073/pnas.1802314115  1
2018 Cole JC, Korb O, McCabe P, Read M, Taylor R. Knowledge-Based Conformer Generation Using the Cambridge Structural Database. Journal of Chemical Information and Modeling. PMID 29425456 DOI: 10.1021/acs.jcim.7b00697  1
2018 Henningham A, Davies MR, Uchiyama S, van Sorge NM, Lund S, Chen KT, Walker MJ, Cole JN, Nizet V. Virulence Role of the GlcNAc Side Chain of the Lancefield Cell Wall Carbohydrate Antigen in Non-M1-Serotype Group A Streptococcus. Mbio. 9. PMID 29382733 DOI: 10.1128/Mbio.02294-17  1
2017 Cole JC, Giangreco I, Groom CR. Using more than 801 296 small-molecule crystal structures to aid in protein structure refinement and analysis. Addendum. Acta Crystallographica. Section D, Structural Biology. 73: 1029. PMID 29199982 DOI: 10.1107/S2059798317016904  1
2017 Tatum NJ, Liebeschuetz JW, Cole JC, Frita R, Herledan A, Baulard AR, Willand N, Pohl E. New active leads for tuberculosis booster drugs by structure-based drug discovery. Organic & Biomolecular Chemistry. 15: 10245-10255. PMID 29182187 DOI: 10.1039/C7Ob00910K  1
2017 Oberdhan D, Cole JC, Krasa HB, Cheng R, Czerwiec FS, Hays RD, Chapman AB, Perrone RD. Development of the Autosomal Dominant Polycystic Kidney Disease Impact Scale: A New Health-Related Quality-of-Life Instrument. American Journal of Kidney Diseases : the Official Journal of the National Kidney Foundation. PMID 29150246 DOI: 10.1053/j.ajkd.2017.08.020  1
2017 Nakanishi R, Osawa K, Ceponiene I, Huth G, Cole J, Kim M, Nezarat N, Rahmani S, Li D, Gupta S, Rogers C, Dailing C, Budoff MJ. The diagnostic performance of SPECT-MPI to predict functional significant coronary artery disease by fractional flow reserve derived from CCTA (FFRCT): sub-analysis from ACCURACY and VCT001 studies. The International Journal of Cardiovascular Imaging. PMID 28699019 DOI: 10.1007/s10554-017-1207-y  1
2017 de Albuquerque Cavalcanti G, Rodrigues LM, Dos Santos L, Zheng X, Gujar A, Cole J, Padilha MC, de Aquino Neto FR. Non-targeted acquisition strategy for screening doping compounds based on GC-EI-hybrid quadrupole-Orbitrap mass spectrometry: focus on exogenous anabolic steroids. Drug Testing and Analysis. PMID 28600878 DOI: 10.1002/dta.2227  0.01
2017 Groom CR, Cole JC. The use of small-molecule structures to complement protein-ligand crystal structures in drug discovery. Acta Crystallographica. Section D, Structural Biology. 73: 240-245. PMID 28291759 DOI: 10.1107/S2059798317000675  1
2017 Cole JC, Giangreco I, Groom CR. Using more than 801 296 small-molecule crystal structures to aid in protein structure refinement and analysis. Acta Crystallographica. Section D, Structural Biology. 73: 234-239. PMID 28291758 DOI: 10.1107/S2059798316014352  1
2017 Döhrmann S, LaRock CN, Anderson EL, Cole JN, Ryali B, Stewart C, Nonejuie P, Pogliano J, Corriden R, Ghosh P, Nizet V. Group A Streptococcal M1 Protein Provides Resistance against the Antimicrobial Activity of Histones. Scientific Reports. 7: 43039. PMID 28220899 DOI: 10.1038/Srep43039  1
2017 Moreland AM, Santa Ana CA, Asplin JR, Kuhn JA, Holmes RP, Cole JA, Odstrcil EA, Van Dinter TG, Martinez JG, Fordtran JS. Steatorrhea and Hyperoxaluria in Severely Obese Patients Before and After Roux-en-Y Gastric Bypass. Gastroenterology. PMID 28089681 DOI: 10.1053/J.Gastro.2017.01.004  1
2016 Budoff MJ, Kalia N, Cole J, Nakanishi R, Nezarat N, Thomas JL. Diagnostic accuracy of Visipaque enhanced coronary computed tomographic angiography: a prospective multicenter trial. Coronary Artery Disease. PMID 27755006 DOI: 10.1097/MCA.0000000000000440  1
2016 Rizvi A, Hartaigh BÓ, Knaapen P, Leipsic J, Shaw LJ, Andreini D, Pontone G, Raman S, Khan MA, Ridner M, Nabi F, Gimelli A, Jang J, Cole J, Nakazato R, et al. Rationale and Design of the CREDENCE Trial: computed TomogRaphic evaluation of atherosclerotic DEtermiNants of myocardial IsChEmia. Bmc Cardiovascular Disorders. 16: 190. PMID 27716131 DOI: 10.1186/S12872-016-0360-X  1
2016 Stewart CM, Buffalo CZ, Valderrama JA, Henningham A, Cole JN, Nizet V, Ghosh P. Coiled-coil destabilizing residues in the group A Streptococcus M1 protein are required for functional interaction. Proceedings of the National Academy of Sciences of the United States of America. PMID 27512043 DOI: 10.1073/Pnas.1606160113  1
2016 Cole JC, Groom CR, Read MG, Giangreco I, McCabe P, Reilly AM, Shields GP. Generation of crystal structures using known crystal structures as analogues. Acta Crystallographica Section B, Structural Science, Crystal Engineering and Materials. 72: 530-41. PMID 27484374 DOI: 10.1107/S2052520616006533  1
2016 Reilly AM, Cooper RI, Adjiman CS, Bhattacharya S, Boese AD, Brandenburg JG, Bygrave PJ, Bylsma R, Campbell JE, Car R, Case DH, Chadha R, Cole JC, Cosburn K, Cuppen HM, et al. Report on the sixth blind test of organic crystal structure prediction methods. Acta Crystallographica Section B, Structural Science, Crystal Engineering and Materials. 72: 439-59. PMID 27484368 DOI: 10.1107/S2052520616007447  1
2016 Döhrmann S, Cole JN, Nizet V. Conquering Neutrophils. Plos Pathogens. 12: e1005682. PMID 27467389 DOI: 10.1371/journal.ppat.1005682  1
2016 Rivera-Hernandez T, Pandey M, Henningham A, Cole J, Choudhury B, Cork AJ, Gillen CM, Ghaffar KA, West NP, Silvestri G, Good MF, Moyle PM, Toth I, Nizet V, Batzloff MR, et al. Differing Efficacies of Lead Group A Streptococcal Vaccine Candidates and Full-Length M Protein in Cutaneous and Invasive Disease Models. Mbio. 7. PMID 27302756 DOI: 10.1128/Mbio.00618-16  1
2016 Cole JN, Nizet V. Bacterial Evasion of Host Antimicrobial Peptide Defenses. Microbiology Spectrum. 4. PMID 26999396 DOI: 10.1128/Microbiolspec.Vmbf-0006-2015  1
2016 Cole JC, Groom CR, Korb O, McCabe P, Shields GP. Knowledge-Based Optimization of Molecular Geometries Using Crystal Structures. Journal of Chemical Information and Modeling. 56: 652-61. PMID 26977906 DOI: 10.1021/acs.jcim.5b00712  1
2016 Korb O, Kuhn B, Hert J, Taylor N, Cole J, Groom C, Stahl M. Interactive and Versatile Navigation of Structural Databases. Journal of Medicinal Chemistry. PMID 26745458 DOI: 10.1021/acs.jmedchem.5b01756  1
2015 Xavier PK, Petch JC, Klingaman NP, Woolnough SJ, Jiang X, Waliser DE, Caian M, Cole J, Hagos SM, Hannay C, Kim D, Miyakawa T, Pritchard MS, Roehrig R, Shindo E, et al. Vertical structure and physical processes of the Madden-Julian Oscillation: Biases and uncertainties at short range. Journal of Geophysical Research. Atmospheres : Jgr. 120: 4749-4763. PMID 27656329 DOI: 10.1002/2014Jd022718  0.01
2015 Pincus R, Mlawer EJ, Oreopoulos L, Ackerman AS, Baek S, Brath M, Buehler SA, Cady-Pereira KE, Cole JN, Dufresne JL, Kelley M, Li J, Manners J, Paynter DJ, Roehrig R, et al. Radiative flux and forcing parameterization error in aerosol-free clear skies. Geophysical Research Letters. 42: 5485-5492. PMID 26937058 DOI: 10.1002/2015Gl064291  0.01
2015 Dang J, Cole JC, Burgess SM, Yang M, Daniels SR, Walt JG. Development and Validation of the Eyelash Satisfaction Questionnaire. Aesthetic Surgery Journal / the American Society For Aesthetic Plastic Surgery. PMID 26691738 DOI: 10.1093/asj/sjv154  1
2015 Betesh AL, Santa Ana CA, Cole JA, Fordtran JS. Reply to R Schiffmann. The American Journal of Clinical Nutrition. 102: 1615-6. PMID 26628571 DOI: 10.3945/ajcn.115.120576  1
2015 Webb MJ, Lock AP, Bretherton CS, Bony S, Cole JN, Idelkadi A, Kang SM, Koshiro T, Kawai H, Ogura T, Roehrig R, Shin Y, Mauritsen T, Sherwood SC, Vial J, et al. The impact of parametrized convection on cloud feedback. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 373. PMID 26438278 DOI: 10.1098/Rsta.2014.0414  1
2015 Barnett TC, Cole JN, Rivera-Hernandez T, Henningham A, Paton JC, Nizet V, Walker MJ. Streptococcal toxins: role in pathogenesis and disease. Cellular Microbiology. PMID 26433203 DOI: 10.1111/Cmi.12531  1
2015 Secundino I, Lizcano A, Roupé KM, Wang X, Cole JN, Olson J, Ali SR, Dahesh S, Amayreh LK, Henningham A, Varki A, Nizet V. Host and pathogen hyaluronan signal through human siglec-9 to suppress neutrophil activation. Journal of Molecular Medicine (Berlin, Germany). PMID 26411873 DOI: 10.1007/S00109-015-1341-8  1
2015 Johnson KD, Birdsey R, Cole J, Swatantran A, O'Neil-Dunne J, Dubayah R, Lister A. Integrating LIDAR and forest inventories to fill the trees outside forests data gap. Environmental Monitoring and Assessment. 187: 623. PMID 26364065 DOI: 10.1007/S10661-015-4839-1  1
2015 Schaefer CP, Cappelleri JC, Cheng R, Cole JC, Guenthner S, Fowler J, Johnson S, Mamolo C. Health care resource use, productivity, and costs among patients with moderate to severe plaque psoriasis in the United States. Journal of the American Academy of Dermatology. 73: 585-593.e3. PMID 26253364 DOI: 10.1016/j.jaad.2015.06.049  1
2015 Kwiecien NW, Bailey DJ, Rush MJ, Cole JS, Ulbrich A, Hebert AS, Westphall MS, Coon JJ. High-Resolution Filtering for Improved Small Molecule Identification via GC/MS. Analytical Chemistry. 87: 8328-35. PMID 26192401 DOI: 10.1021/Acs.Analchem.5B01503  1
2015 Xu D, Olson J, Cole JN, van Wijk XM, Brinkmann V, Zychlinsky A, Nizet V, Esko JD, Chang YC. Heparan Sulfate Modulates Neutrophil and Endothelial Function in Antibacterial Innate Immunity. Infection and Immunity. 83: 3648-56. PMID 26150541 DOI: 10.1128/Iai.00545-15  1
2015 Betesh AL, Santa Ana CA, Cole JA, Fordtran JS. Is achlorhydria a cause of iron deficiency anemia? The American Journal of Clinical Nutrition. 102: 9-19. PMID 25994564 DOI: 10.3945/ajcn.114.097394  1
2015 Budoff MJ, Bloom SA, Chow BJ, Chandler AB, Cole JH. Coronary computed tomography angiography predicts subsequent cardiac outcome events: results of the Visipaque CCTA registry study. Coronary Artery Disease. 26: 301-7. PMID 25831222 DOI: 10.1097/MCA.0000000000000248  1
2015 Douglas PS, Hoffmann U, Patel MR, Mark DB, Al-Khalidi HR, Cavanaugh B, Cole J, Dolor RJ, Fordyce CB, Huang M, Khan MA, Kosinski AS, Krucoff MW, Malhotra V, Picard MH, et al. Outcomes of anatomical versus functional testing for coronary artery disease. The New England Journal of Medicine. 372: 1291-300. PMID 25773919 DOI: 10.1056/Nejmoa1415516  1
2015 Henningham A, Döhrmann S, Nizet V, Cole JN. Mechanisms of group A Streptococcus resistance to reactive oxygen species. Fems Microbiology Reviews. 39: 488-508. PMID 25670736 DOI: 10.1093/Femsre/Fuu009  1
2014 Giangreco I, Olsson TS, Cole JC, Packer MJ. Assessment of a Cambridge Structural Database-driven overlay program. Journal of Chemical Information and Modeling. 54: 3091-8. PMID 25392927 DOI: 10.1021/ci500509y  1
2014 Henningham A, Yamaguchi M, Aziz RK, Kuipers K, Buffalo CZ, Dahesh S, Choudhury B, Van Vleet J, Yamaguchi Y, Seymour LM, Ben Zakour NL, He L, Smith HV, Grimwood K, Beatson SA, ... ... Cole JN, et al. Mutual exclusivity of hyaluronan and hyaluronidase in invasive group A Streptococcus. The Journal of Biological Chemistry. 289: 32303-15. PMID 25266727 DOI: 10.1074/Jbc.M114.602847  0.44
2014 Cole JC, Ito D, Chen YJ, Cheng R, Bolognese J, Li-McLeod J. Impact of Alzheimer's Disease on Caregiver Questionnaire: internal consistency, convergent validity, and test-retest reliability of a new measure for assessing caregiver burden. Health and Quality of Life Outcomes. 12: 114. PMID 25186634 DOI: 10.1186/s12955-014-0114-3  1
2014 Taylor R, Cole J, Korb O, McCabe P. Knowledge-based libraries for predicting the geometric preferences of druglike molecules. Journal of Chemical Information and Modeling. 54: 2500-14. PMID 25111149 DOI: 10.1021/ci500358p  1
2014 van Sorge NM, Cole JN, Kuipers K, Henningham A, Aziz RK, Kasirer-Friede A, Lin L, Berends ET, Davies MR, Dougan G, Zhang F, Dahesh S, Shaw L, Gin J, Cunningham M, et al. The classical lancefield antigen of group a Streptococcus is a virulence determinant with implications for vaccine design. Cell Host & Microbe. 15: 729-40. PMID 24922575 DOI: 10.1016/J.Chom.2014.05.009  1
2014 ElRakaiby M, Dutilh BE, Rizkallah MR, Boleij A, Cole JN, Aziz RK. Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics. Omics : a Journal of Integrative Biology. 18: 402-14. PMID 24785449 DOI: 10.1089/omi.2014.0018  1
2014 McCabe P, Korb O, Cole J. Kernel density estimation applied to bond length, bond angle, and torsion angle distributions. Journal of Chemical Information and Modeling. 54: 1284-8. PMID 24746022 DOI: 10.1021/ci500156d  1
2014 Walker MJ, Barnett TC, McArthur JD, Cole JN, Gillen CM, Henningham A, Sriprakash KS, Sanderson-Smith ML, Nizet V. Disease manifestations and pathogenic mechanisms of group a Streptococcus. Clinical Microbiology Reviews. 27: 264-301. PMID 24696436 DOI: 10.1128/Cmr.00101-13  1
2014 Anderson EL, Cole JN, Olson J, Ryba B, Ghosh P, Nizet V. The fibrinogen-binding M1 protein reduces pharyngeal cell adherence and colonization phenotypes of M1T1 group A Streptococcus. The Journal of Biological Chemistry. 289: 3539-46. PMID 24356958 DOI: 10.1074/Jbc.M113.529537  1
2013 Tsatsaronis JA, Hollands A, Cole JN, Maamary PG, Gillen CM, Ben Zakour NL, Kotb M, Nizet V, Beatson SA, Walker MJ, Sanderson-Smith ML. Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 2633-43. PMID 23531597 DOI: 10.1096/Fj.12-226662  1
2012 Dahesh S, Nizet V, Cole JN. Study of streptococcal hemoprotein receptor (Shr) in iron acquisition and virulence of M1T1 group A streptococcus. Virulence. 3: 566-75. PMID 23076332 DOI: 10.4161/Viru.21933  1
2012 Cole JN, Aziz RK, Kuipers K, Timmer AM, Nizet V, van Sorge NM. A conserved UDP-glucose dehydrogenase encoded outside the hasABC operon contributes to capsule biogenesis in group A Streptococcus. Journal of Bacteriology. 194: 6154-61. PMID 22961854 DOI: 10.1128/Jb.01317-12  1
2012 Min JK, Leipsic J, Pencina MJ, Berman DS, Koo BK, van Mieghem C, Erglis A, Lin FY, Dunning AM, Apruzzese P, Budoff MJ, Cole JH, Jaffer FA, Leon MB, Malpeso J, et al. Diagnostic accuracy of fractional flow reserve from anatomic CT angiography. Jama. 308: 1237-45. PMID 22922562 DOI: 10.1001/2012.Jama.11274  1
2012 Steffer KJ, Santa Ana CA, Cole JA, Fordtran JS. The practical value of comprehensive stool analysis in detecting the cause of idiopathic chronic diarrhea. Gastroenterology Clinics of North America. 41: 539-60. PMID 22917163 DOI: 10.1016/j.gtc.2012.06.001  1
2012 Maamary PG, Ben Zakour NL, Cole JN, Hollands A, Aziz RK, Barnett TC, Cork AJ, Henningham A, Sanderson-Smith M, McArthur JD, Venturini C, Gillen CM, Kirk JK, Johnson DR, Taylor WL, et al. Tracing the evolutionary history of the pandemic group A streptococcal M1T1 clone. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 4675-84. PMID 22878963 DOI: 10.1096/Fj.12-212142  1
2012 Min JK, Koduru S, Dunning AM, Cole JH, Hines JL, Greenwell D, Biga C, Fanning G, LaBounty TM, Gomez M, Horowitz JM, Hadimitzsky M, Hausleiter J, Callister TQ, Rosanski AR, et al. Coronary CT angiography versus myocardial perfusion imaging for near-term quality of life, cost and radiation exposure: a prospective multicenter randomized pilot trial. Journal of Cardiovascular Computed Tomography. 6: 274-83. PMID 22732201 DOI: 10.1016/j.jcct.2012.06.002  1
2012 Taylor R, Cole JC, Cosgrove DA, Gardiner EJ, Gillet VJ, Korb O. Development and validation of an improved algorithm for overlaying flexible molecules Journal of Computer-Aided Molecular Design. 26: 451-472. PMID 22538643 DOI: 10.1007/s10822-012-9573-y  1
2012 Henningham A, Chiarot E, Gillen CM, Cole JN, Rohde M, Fulde M, Ramachandran V, Cork AJ, Hartas J, Magor G, Djordjevic SP, Cordwell SJ, Kobe B, Sriprakash KS, Nizet V, et al. Conserved anchorless surface proteins as group A streptococcal vaccine candidates. Journal of Molecular Medicine (Berlin, Germany). 90: 1197-207. PMID 22527883 DOI: 10.1007/S00109-012-0897-9  1
2012 Korb O, Olsson TS, Bowden SJ, Hall RJ, Verdonk ML, Liebeschuetz JW, Cole JC. Potential and limitations of ensemble docking. Journal of Chemical Information and Modeling. 52: 1262-74. PMID 22482774 DOI: 10.1021/ci2005934  1
2012 Cottrell SJ, Olsson TS, Taylor R, Cole JC, Liebeschuetz JW. Validating and understanding ring conformations using small molecule crystallographic data. Journal of Chemical Information and Modeling. 52: 956-62. PMID 22372622 DOI: 10.1021/ci200439d  1
2012 Liebeschuetz JW, Cole JC, Korb O. Pose prediction and virtual screening performance of GOLD scoring functions in a standardized test Journal of Computer-Aided Molecular Design. 26: 737-748. PMID 22371207 DOI: 10.1007/s10822-012-9551-4  1
2011 Korb O, McCabe P, Cole J. The ensemble performance index: an improved measure for assessing ensemble pose prediction performance. Journal of Chemical Information and Modeling. 51: 2915-9. PMID 21962010 DOI: 10.1021/ci2002796  1
2011 Cole JN, Barnett TC, Nizet V, Walker MJ. Molecular insight into invasive group A streptococcal disease. Nature Reviews. Microbiology. 9: 724-36. PMID 21921933 DOI: 10.1038/Nrmicro2648  1
2011 Amelung S, Nerlich A, Rohde M, Spellerberg B, Cole JN, Nizet V, Chhatwal GS, Talay SR. The FbaB-type fibronectin-binding protein of Streptococcus pyogenes promotes specific invasion into endothelial cells. Cellular Microbiology. 13: 1200-11. PMID 21615663 DOI: 10.1111/J.1462-5822.2011.01610.X  1
2011 Macheboeuf P, Buffalo C, Fu CY, Zinkernagel AS, Cole JN, Johnson JE, Nizet V, Ghosh P. Streptococcal M1 protein constructs a pathological host fibrinogen network. Nature. 472: 64-8. PMID 21475196 DOI: 10.1038/Nature09967  1
2011 Koch O, Cole J. An automated method for consistent helix assignment using turn information. Proteins. 79: 1416-26. PMID 21365674 DOI: 10.1002/prot.22968  1
2010 Thomas IR, Bruno IJ, Cole JC, Macrae CF, Pidcock E, Wood PA. WebCSD: the online portal to the Cambridge Structural Database. Journal of Applied Crystallography. 43: 362-366. PMID 22477776 DOI: 10.1107/S0021889810000452  1
2010 Cole JN, Pence MA, von Köckritz-Blickwede M, Hollands A, Gallo RL, Walker MJ, Nizet V. M protein and hyaluronic acid capsule are essential for in vivo selection of covRS mutations characteristic of invasive serotype M1T1 group A Streptococcus. Mbio. 1. PMID 20827373 DOI: 10.1128/Mbio.00191-10  1
2010 Pence MA, Rooijakkers SH, Cogen AL, Cole JN, Hollands A, Gallo RL, Nizet V. Streptococcal inhibitor of complement promotes innate immune resistance phenotypes of invasive M1T1 group A Streptococcus. Journal of Innate Immunity. 2: 587-95. PMID 20814187 DOI: 10.1159/000317672  1
2010 Maamary PG, Sanderson-Smith ML, Aziz RK, Hollands A, Cole JN, McKay FC, McArthur JD, Kirk JK, Cork AJ, Keefe RJ, Kansal RG, Sun H, Taylor WL, Chhatwal GS, Ginsburg D, et al. Parameters governing invasive disease propensity of non-M1 serotype group A streptococci. Journal of Innate Immunity. 2: 596-606. PMID 20814186 DOI: 10.1159/000317640  1
2009 Koch O, Cole J, Block P, Klebe G. Secbase: database module to retrieve secondary structure elements with ligand binding motifs. Journal of Chemical Information and Modeling. 49: 2388-402. PMID 19807134 DOI: 10.1021/ci900202d  1
2009 O'Boyle NM, Liebeschuetz JW, Cole JC. Testing assumptions and hypotheses for rescoring success in protein-ligand docking Journal of Chemical Information and Modeling. 49: 1871-1878. PMID 19645429 DOI: 10.1021/ci900164f  1
2009 Ayyad AE, Cole J, Syed A, Desai MY, Halliburton S, Schoenhagen P, Flamm SD, Sola S. Temporal trends in utilization of cardiac computed tomography. Journal of Cardiovascular Computed Tomography. 3: 16-21. PMID 19201372 DOI: 10.1016/j.jcct.2008.10.009  0.01
2008 Cole JN, Henningham A, Gillen CM, Ramachandran V, Walker MJ. Human pathogenic streptococcal proteomics and vaccine development. Proteomics. Clinical Applications. 2: 387-410. PMID 21136841 DOI: 10.1002/prca.200780048  1
2008 Cole JH. Coronary CT angiography: Asking the right questions Journal of Cardiovascular Computed Tomography. 2: 379-381. PMID 19083981 DOI: 10.1016/j.jcct.2008.10.002  1
2008 McArthur JD, McKay FC, Ramachandran V, Shyam P, Cork AJ, Sanderson-Smith ML, Cole JN, Ringdahl U, Sjöbring U, Ranson M, Walker MJ. Allelic variants of streptokinase from Streptococcus pyogenes display functional differences in plasminogen activation. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 22: 3146-53. PMID 18511548 DOI: 10.1096/fj.08-109348  1
2008 Cole JN, Djordjevic SP, Walker MJ. Isolation and solubilization of gram-positive bacterial cell wall-associated proteins Methods in Molecular Biology (Clifton, N.J.). 425: 295-311. PMID 18369905  1
2008 Arain NI, Batten LA, Cole JH. Computed tomography angiography of a coronary artery fistula Pediatric Cardiology. 29: 234-235. PMID 17882477 DOI: 10.1007/s00246-007-9089-8  1
2007 Cole JH, Chunn VM, Morrow JA, Buckley RS, Phillips GM. Cost implications of initial computed tomography angiography as opposed to catheterization in patients with mildly abnormal or equivocal myocardial perfusion scans. Journal of Cardiovascular Computed Tomography. 1: 21-6. PMID 19083872 DOI: 10.1016/j.jcct.2007.04.008  1
2007 Cole JC, Dubois D, Kosinski M. Use of patient-reported sleep measures in clinical trials of pain treatment: a literature review and synthesis of current sleep measures and a conceptual model of sleep disturbance in pain. Clinical Therapeutics. 29: 2580-8. PMID 18164923 DOI: 10.1016/j.clinthera.2007.12.005  1
2007 Cole JN, Aquilina JA, Hains PG, Henningham A, Sriprakash KS, Caparon MG, Nizet V, Kotb M, Cordwell SJ, Djordjevic SP, Walker MJ. Role of group A Streptococcus HtrA in the maturation of SpeB protease. Proteomics. 7: 4488-98. PMID 18072207 DOI: 10.1002/Pmic.200700626  1
2007 Walker MJ, Hollands A, Sanderson-Smith ML, Cole JN, Kirk JK, Henningham A, McArthur JD, Dinkla K, Aziz RK, Kansal RG, Simpson AJ, Buchanan JT, Chhatwal GS, Kotb M, Nizet V. DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection. Nature Medicine. 13: 981-5. PMID 17632528 DOI: 10.1038/Nm1612  1
2007 Cole JC, Lin P, Rupnow MFT. Validation of the Migraine-Specific Quality of Life Questionnaire version 2.1 (MSQ v. 2.1) for patients undergoing prophylactic migraine treatment Quality of Life Research. 16: 1231-1237. PMID 17468941 DOI: 10.1007/s11136-007-9217-1  1
2007 DeFilippis AP, Larned JM, Cole JH, Nell-Dybdahl C, Miller JI, Sperling LS. Clues to cardiovascular risk: an office-based approach. Preventive Cardiology. 10: 36-41. PMID 17215632 DOI: 10.1111/j.1520-037X.2007.05544.x  1
2006 Madhavan G, Cole JP, Pierce CS, McLeod KJ. Reversal of lower limb venous and lymphatic pooling by passive non-invasive calf muscle pump stimulation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 2875-7. PMID 17946146 DOI: 10.1109/IEMBS.2006.260364  1
2006 Cole JP, Madhavan G, McLeod KJ. Vibromyographic quantification of voluntary isometric contractile force in the brachioradialis. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 1708-10. PMID 17946062 DOI: 10.1109/IEMBS.2006.260152  1
2006 Cole JC, Khanna D, Clements PJ, Seibold JR, Tashkin DP, Paulus HE, Irwin MR, Motivala SJ, Furst DE. Single-factor scoring validation for the Health Assessment Questionnaire-Disability Index (HAQ-DI) in patients with systemic sclerosis and comparison with early rheumatoid arthritis patients. Quality of Life Research : An International Journal of Quality of Life Aspects of Treatment, Care and Rehabilitation. 15: 1383-94. PMID 16826439 DOI: 10.1007/S11136-006-0018-8  1
2006 Cole JN, McArthur JD, McKay FC, Sanderson-Smith ML, Cork AJ, Ranson M, Rohde M, Itzek A, Sun H, Ginsburg D, Kotb M, Nizet V, Chhatwal GS, Walker MJ. Trigger for group A streptococcal M1T1 invasive disease. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 20: 1745-7. PMID 16790522 DOI: 10.1096/Fj.06-5804Fje  1
2006 Cole JC, Motivala SJ, Buysse DJ, Oxman MN, Levin MJ, Irwin MR. Validation of a 3-factor scoring model for the Pittsburgh sleep quality index in older adults. Sleep. 29: 112-6. PMID 16453989 DOI: 10.1093/Sleep/29.1.112  1
2006 Irwin MR, Cole JC, Nicassio PM. Comparative meta-analysis of behavioral interventions for insomnia and their efficacy in middle-aged adults and in older adults 55+ years of age. Health Psychology : Official Journal of the Division of Health Psychology, American Psychological Association. 25: 3-14. PMID 16448292 DOI: 10.1037/0278-6133.25.1.3  1
2005 Goddard A, Madhavan G, Cole J, Fowler M, McLeod K. Time-frequency analysis of endogenous calf skeletal muscle vibromyograms. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 7: 6742-4. PMID 17281821 DOI: 10.1109/IEMBS.2005.1616052  1
2005 Verdonk ML, Chessari G, Cole JC, Hartshorn MJ, Murray CW, Nissink JW, Taylor RD, Taylor R. Modeling water molecules in protein-ligand docking using GOLD. Journal of Medicinal Chemistry. 48: 6504-15. PMID 16190776 DOI: 10.1021/jm050543p  1
2005 Cole JC, Motivala SJ, Khanna D, Lee JY, Paulus HE, Irwin MR. Validation of single-factor structure and scoring protocol for the Health Assessment Questionnaire-Disability Index. Arthritis and Rheumatism. 53: 536-42. PMID 16082630 DOI: 10.1002/Art.21325  1
2005 Cole JC, Murray CW, Nissink JW, Taylor RD, Taylor R. Comparing protein-ligand docking programs is difficult. Proteins. 60: 325-32. PMID 15937897 DOI: 10.1002/prot.20497  1
2005 Cole JN, Ramirez RD, Currie BJ, Cordwell SJ, Djordjevic SP, Walker MJ. Surface analyses and immune reactivities of major cell wall-associated proteins of group a streptococcus. Infection and Immunity. 73: 3137-46. PMID 15845522 DOI: 10.1128/IAI.73.5.3137-3146.2005  1
2004 Cole JC, Rabin AS, Smith TL, Kaufman AS. Development and validation of a Rasch-derived CES-D short form. Psychological Assessment. 16: 360-72. PMID 15584795 DOI: 10.1037/1040-3590.16.4.360  1
2004 Bruno IJ, Cole JC, Kessler M, Luo J, Motherwell WD, Purkis LH, Smith BR, Taylor R, Cooper RI, Harris SE, Orpen AG. Retrieval of crystallographically-derived molecular geometry information. Journal of Chemical Information and Computer Sciences. 44: 2133-44. PMID 15554684 DOI: 10.1021/Ci049780B  1
2004 Baman TS, Cole JH, Devireddy CM, Sperling LS. Risk factors and outcomes in patients with coronary artery aneurysms American Journal of Cardiology. 93: 1549-1551. PMID 15194034 DOI: 10.1016/j.amjcard.2004.03.011  1
2004 Cole JC, Lopez BR, Daleo DV. Latent relationships of fluid, visual, and simultaneous cognitive tasks Psychological Reports. 94: 547-561. PMID 15154184  1
2004 Cole JH, Sperling LS. Premature coronary artery disease: Clinical risk factors and prognosis Current Atherosclerosis Reports. 6: 121-125. PMID 15023296  1
2004 Cole JH, Weintraub WS. Restenosis: Are the implications changing? American Heart Journal. 147: 197-199. PMID 14760312 DOI: 10.1016/j.ahj.2003.10.001  1
2003 Cole JC, Grossman I, Prilliman C, Hunsaker E. Multimethod validation of the Beck Depression Inventory-II and Grossman-Cole Depression Inventory with an inpatient sample Psychological Reports. 93: 1115-1129. PMID 14765580  1
2003 Cole JH, Weintraub WS. Are Stenting and Glycoprotein IIb/IIIa Blockade of Good Value in Primary Percutaneous Coronary Intervention? Circulation. 108: 2831-2833. PMID 14662689 DOI: 10.1161/01.CIR.0000106681.88891.F2  1
2003 Pidcock E, Motherwell WD, Cole JC. A database survey of molecular and crystallographic symmetry. Acta Crystallographica. Section B, Structural Science. 59: 634-40. PMID 14586084  1
2003 Irwin MR, Pike JL, Cole JC, Oxman MN. Effects of a behavioral intervention, Tai Chi Chih, on varicella-zoster virus specific immunity and health functioning in older adults Psychosomatic Medicine. 65: 824-830. PMID 14508027 DOI: 10.1097/01.PSY.0000088591.86103.8F  1
2003 Verdonk ML, Cole JC, Hartshorn MJ, Murray CW, Taylor RD. Improved protein-ligand docking using GOLD. Proteins. 52: 609-23. PMID 12910460 DOI: 10.1002/prot.10465  1
2003 McArthur JD, West NP, Cole JN, Jungnitz H, Guzmán CA, Chin J, Lehrbach PR, Djordjevic SP, Walker MJ. An aromatic amino acid auxotrophic mutant of Bordetella bronchiseptica is attenuated and immunogenic in a mouse model of infection. Fems Microbiology Letters. 221: 7-16. PMID 12694904  1
2003 Cole JH, Miller JI, Sperling LS, Weintraub WS. Long-term follow-up of coronary artery disease presenting in young adults Journal of the American College of Cardiology. 41: 521-528. PMID 12598059 DOI: 10.1016/S0735-1097(02)02862-0  1
2002 Cole JH, Jones EL, Craver JM, Guyton RA, Morris DC, Douglas JS, Ghazzal Z, Weintraub WS. Outcomes of repeat revascularization in diabetic patients with prior coronary surgery. Journal of the American College of Cardiology. 40: 1968-75. PMID 12475457 DOI: 10.1016/S0735-1097(02)02561-5  1
2002 Nissink JW, Murray C, Hartshorn M, Verdonk ML, Cole JC, Taylor R. A new test set for validating predictions of protein-ligand interaction. Proteins. 49: 457-71. PMID 12402356 DOI: 10.1002/prot.10232  1
2002 Nowell H, Attfield JP, Cole JC. The use of restraints in Rietveld refinement of molecular compounds; a case study using the crystal structure determination of tryptamine free base. Acta Crystallographica. Section B, Structural Science. 58: 835-40. PMID 12324696 DOI: 10.1107/S0108768102011370  1
2002 Yao JW, Cole JC, Pidcock E, Allen FH, Howard JA, Motherwell WD. CSDSymmetry: the definitive database of point-group and space-group symmetry relationships in small-molecule crystal structures. Acta Crystallographica. Section B, Structural Science. 58: 640-6. PMID 12149554 DOI: 10.1107/S0108768102006675  1
2002 Bruno IJ, Cole JC, Edgington PR, Kessler M, Macrae CF, McCabe P, Pearson J, Taylor R. New software for searching the Cambridge Structural Database and visualizing crystal structures. Acta Crystallographica. Section B, Structural Science. 58: 389-97. PMID 12037360 DOI: 10.1107/S0108768102003324  1
2002 Weintraub WS, Cole J, Tooley JF. Cost and cost-effectiveness studies in heart failure research. American Heart Journal. 143: 565-76. PMID 11923792  1
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