| Year |
Citation |
Score |
| 2021 |
Goodsell DS, Burley SK. RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens. Structure (London, England : 1993). PMID 34739839 DOI: 10.1016/j.str.2021.10.008 |
1 |
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| 2021 |
Zardecki C, Burley SK. John D. Westbrook Jr (1957-2021). Acta Crystallographica. Section D, Structural Biology. 77: 1475-1476. PMID 34726174 DOI: 10.1107/S2059798321011402 |
1 |
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| 2021 |
Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Goodsell DS, Ghosh S, Kramer Green R, et al. RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. Protein Science : a Publication of the Protein Society. PMID 34676613 DOI: 10.1002/pro.4213 |
1 |
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| 2021 |
Markosian C, Staquicini DI, Dogra P, Dodero-Rojas E, Tang FHF, Smith TL, Contessoto VG, Libutti SK, Wang Z, Cristini V, Whitford PC, Burley SK, Onuchic JN, Pasqualini R, Arap W. Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools. Biorxiv : the Preprint Server For Biology. PMID 34676381 DOI: 10.1101/2021.08.30.458222 |
1 |
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| 2021 |
Zardecki C, Dutta S, Goodsell DS, Lowe R, Voigt M, Burley SK. PDB-101: Educational Resources Supporting Molecular Explorations Through Biology and Medicine. Protein Science : a Publication of the Protein Society. PMID 34601771 DOI: 10.1002/pro.4200 |
1 |
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| 2021 |
Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, ... ... Burley SK, et al. Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic. Proteins. PMID 34580920 DOI: 10.1002/prot.26250 |
1 |
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| 2021 |
Zhang S, Zhou YF, Cao J, Burley SK, Wang HY, Zheng XFS. mTORC1 Promotes ARID1A Degradation and Oncogenic Chromatin Remodeling in Hepatocellular Carcinoma. Cancer Research. PMID 34429326 DOI: 10.1158/0008-5472.CAN-21-0206 |
1 |
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| 2021 |
Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, ... ... Burley SK, et al. Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34234013 DOI: 10.1073/pnas.2105739118 |
1 |
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| 2021 |
Staquicini FI, Hajitou A, Driessen WH, Proneth B, Cardó-Vila M, Staquicini DI, Markosian C, Hoh M, Cortez M, Hooda-Nehra A, Jaloudi M, Silva IT, Buttura J, Nunes D, Dias-Neto E, ... ... Burley S, et al. Targeting a cell surface vitamin D receptor on tumor-associated macrophages in triple-negative breast cancer. Elife. 10. PMID 34060472 DOI: 10.7554/eLife.65145 |
1 |
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| 2021 |
Burley SK, Berman HM. Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction. Structure (London, England : 1993). 29: 515-520. PMID 33984281 DOI: 10.1016/j.str.2021.04.010 |
1 |
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| 2021 |
Shao C, Feng Z, Westbrook JD, Peisach E, Berrisford J, Ikegawa Y, Kurisu G, Velankar S, Burley SK, Young JY. Modernized Uniform Representation of Carbohydrate Molecules in theProtein Data Bank. Glycobiology. PMID 33978738 DOI: 10.1093/glycob/cwab039 |
1 |
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| 2021 |
Sehnal D, Bittrich S, Deshpande M, Svobodová R, Berka K, Bazgier V, Velankar S, Burley SK, Koča J, Rose AS. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Research. PMID 33956157 DOI: 10.1093/nar/gkab314 |
1 |
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| 2021 |
Velankar S, Burley SK, Kurisu G, Hoch JC, Markley JL. The Protein Data Bank Archive. Methods in Molecular Biology (Clifton, N.J.). 2305: 3-21. PMID 33950382 DOI: 10.1007/978-1-0716-1406-8_1 |
1 |
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| 2021 |
Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, ... ... Burley SK, et al. Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain. Biorxiv : the Preprint Server For Biology. PMID 33758865 DOI: 10.1101/2021.03.15.435496 |
1 |
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| 2021 |
Burley SK. Impact of structural biologists and the Protein Data Bank on small-molecule drug discovery and development. The Journal of Biological Chemistry. 100559. PMID 33744282 DOI: 10.1016/j.jbc.2021.100559 |
0.01 |
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| 2021 |
Feng Z, Westbrook JD, Sala R, Smart OS, Bricogne G, Matsubara M, Yamada I, Tsuchiya S, Aoki-Kinoshita KF, Hoch JC, Kurisu G, Velankar S, Burley SK, Young JY. Enhanced validation of small-molecule ligands and carbohydrates in the protein databank. Structure (London, England : 1993). PMID 33657417 DOI: 10.1016/j.str.2021.02.004 |
1 |
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| 2021 |
Zhang H, Spencer K, Burley SK, Zheng XFS. Toward improving androgen receptor-targeted therapies in male-dominant hepatocellular carcinoma. Drug Discovery Today. PMID 33561464 DOI: 10.1016/j.drudis.2021.02.001 |
1 |
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| 2021 |
Sehnal D, Svobodová R, Berka K, Rose AS, Burley SK, Velankar S, Koča J. High-performance macromolecular data delivery and visualization for the web. Corrigendum. Acta Crystallographica. Section D, Structural Biology. 77: 126. PMID 33404533 DOI: 10.1107/S205979832001606X |
1 |
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| 2020 |
Segura J, Rose Y, Westbrook J, Burley SK, Duarte JM. RCSB Protein Data Bank 1D Tools and Services. Bioinformatics (Oxford, England). PMID 33313665 DOI: 10.1093/bioinformatics/btaa1012 |
1 |
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| 2020 |
Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, ... ... Burley SK, et al. Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic. Biorxiv : the Preprint Server For Biology. PMID 33299989 DOI: 10.1101/2020.12.01.406637 |
1 |
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| 2020 |
Bittrich S, Burley SK, Rose AS. Real-time structural motif searching in proteins using an inverted index strategy. Plos Computational Biology. 16: e1008502. PMID 33284792 DOI: 10.1371/journal.pcbi.1008502 |
1 |
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| 2020 |
Sehnal D, Svobodová R, Berka K, Rose AS, Burley SK, Velankar S, Koča J. High-performance macromolecular data delivery and visualization for the web. Acta Crystallographica. Section D, Structural Biology. 76: 1167-1173. PMID 33263322 DOI: 10.1107/S2059798320014515 |
1 |
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| 2020 |
Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, et al. RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Research. PMID 33211854 DOI: 10.1093/nar/gkaa1038 |
1 |
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| 2020 |
Stebbing J, Sánchez Nievas G, Falcone M, Youhanna S, Richardson P, Ottaviani S, Shen JX, Sommerauer C, Tiseo G, Ghiadoni L, Virdis A, Monzani F, Rizos LR, Forfori F, Avendaño-Céspedes A, ... ... Burley SK, et al. JAK inhibition reduces SARS-CoV-2 liver infectivity and modulates inflammatory responses to reduce morbidity and mortality. Science Advances. PMID 33187978 DOI: 10.1126/sciadv.abe4724 |
1 |
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| 2020 |
Rose Y, Duarte JM, Lowe R, Segura J, Bi C, Bhikadiya C, Chen L, Rose AS, Bittrich S, Burley SK, Westbrook JD. RCSB Protein Data Bank: Architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive. Journal of Molecular Biology. PMID 33186584 DOI: 10.1016/j.jmb.2020.11.003 |
1 |
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| 2020 |
Sehnal D, Bittrich S, Velankar S, Koča J, Svobodová R, Burley SK, Rose AS. BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. Plos Computational Biology. 16: e1008247. PMID 33075050 DOI: 10.1371/journal.pcbi.1008247 |
1 |
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| 2020 |
Goodsell DS, Burley SK. RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study. Oncogene. PMID 32939013 DOI: 10.1038/S41388-020-01461-2 |
1 |
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| 2020 |
Burley SK, Bromberg Y, Craig P, Duffy S, Dutta S, Hall BL, Hudson BP, Jiang J, D Khare S, Koeppe JR, Lubin JH, Mills SA, Pikaart MJ, Roberts R, Sarma V, et al. Virtual Boot Camp: COVID-19 evolution and structural biology. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 32797732 DOI: 10.1002/Bmb.21428 |
1 |
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| 2020 |
Goodsell DS, Voigt M, Zardecki C, Burley SK. Integrative illustration for coronavirus outreach. Plos Biology. 18: e3000815. PMID 32760062 DOI: 10.1371/Journal.Pbio.3000815 |
1 |
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| 2020 |
Guzenko D, Burley SK, Duarte JM. Real time structural search of the Protein Data Bank. Plos Computational Biology. 16: e1007970. PMID 32639954 DOI: 10.1371/Journal.Pcbi.1007970 |
1 |
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| 2020 |
Goodsell DS, Zardecki C, Berman HM, Burley SK. Insights from 20 years of the Molecule of the Month. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 32558264 DOI: 10.1002/Bmb.21360 |
1 |
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| 2020 |
Burley SK. How to help the free market fight coronavirus. Nature. PMID 32210376 DOI: 10.1038/D41586-020-00888-7 |
0.01 |
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| 2020 |
Westbrook JD, Soskind R, Hudson BP, Burley SK. Impact of the Protein Data Bank on antineoplastic approvals. Drug Discovery Today. PMID 32068073 DOI: 10.1016/J.Drudis.2020.02.002 |
1 |
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| 2020 |
Parks CD, Gaieb Z, Chiu M, Yang H, Shao C, Walters WP, Jansen JM, McGaughey G, Lewis RA, Bembenek SD, Ameriks MK, Mirzadegan T, Burley SK, Amaro RE, Gilson MK. D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. Journal of Computer-Aided Molecular Design. PMID 31974851 DOI: 10.1007/S10822-020-00289-Y |
1 |
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| 2020 |
Feng Z, Verdiguel N, Costanzo LD, Goodsell DS, Westbrook JD, Burley SK, Zardecki C. Impact of the Protein Data Bank Across Scientific Disciplines Data Science Journal. 19: 25. DOI: 10.5334/Dsj-2020-025 |
1 |
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| 2020 |
Zardecki C, Shao C, Feng Z, Westbrook JD, Persikova I, Burley SK, Young JY. Collaborating With Glycoscience Community To Improve Data Representation of Carbohydrates in the Protein Data Bank The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.03289 |
1 |
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| 2020 |
Zardecki C, Berman HM, Burley SK, Goodsell DS. Insights from 20 Years of the Molecule of the Month and PDB‐101 The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.02238 |
1 |
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| 2019 |
Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, et al. Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure (London, England : 1993). PMID 31780431 DOI: 10.1016/J.Str.2019.11.002 |
1 |
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| 2019 |
Goodsell DS, Zardecki C, Di Costanzo L, Duarte JM, Hudson BP, Persikova I, Segura J, Shao C, Voigt M, Westbrook JD, Young JY, Burley SK. RCSB Protein Data Bank: Enabling biomedical research and drug discovery. Protein Science : a Publication of the Protein Society. PMID 31531901 DOI: 10.1002/Pro.3730 |
1 |
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| 2019 |
Wagner JR, Churas CP, Liu S, Swift RV, Chiu M, Shao C, Feher VA, Burley SK, Gilson MK, Amaro RE. Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking. Structure (London, England : 1993). PMID 31257108 DOI: 10.1016/J.Str.2019.05.012 |
1 |
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| 2019 |
Castellano GM, Aisner J, Burley SK, Vallat B, Yu HA, Pine SR, Ganesan S. A Novel Acquired Exon 20 EGFR M766Q Mutation in Lung Adenocarcinoma Mediates Osimertinib Resistance but is Sensitive to Neratinib and Poziotinib: a Brief Report. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. PMID 31254668 DOI: 10.1016/J.Jtho.2019.06.015 |
0.01 |
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| 2019 |
Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, et al. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Crystallographica. Section D, Structural Biology. 75: 451-454. PMID 30988261 DOI: 10.1107/S2059798319004522 |
1 |
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| 2019 |
Lafita A, Bliven S, Prlić A, Guzenko D, Rose PW, Bradley A, Pavan P, Myers-Turnbull D, Valasatava Y, Heuer M, Larson M, Burley SK, Duarte JM. BioJava 5: A community driven open-source bioinformatics library. Plos Computational Biology. 15: e1006791. PMID 30735498 DOI: 10.1371/Journal.Pcbi.1006791 |
1 |
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| 2019 |
Gaieb Z, Parks CD, Chiu M, Yang H, Shao C, Walters WP, Lambert MH, Nevins N, Bembenek SD, Ameriks MK, Mirzadegan T, Burley SK, Amaro RE, Gilson MK. D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings. Journal of Computer-Aided Molecular Design. PMID 30632055 DOI: 10.1007/S10822-018-0180-4 |
1 |
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| 2019 |
Young JY, Shao C, Feng Z, Westbrook J, Peisach E, Persikova I, Burley SK. Enabling findability, accessibility, interoperability, and reusability with improved data representation of carbohydrates in the Protein Data Bank F1000research. 8. DOI: 10.7490/F1000Research.1116506.1 |
1 |
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| 2019 |
Young J, Westbrook J, Burley SK, team RP. Creating and maintaining a data archive for 3D structures of biological macromolecules F1000research. 8. DOI: 10.7490/F1000Research.1111762.1 |
1 |
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| 2019 |
Zardecki C, Young J, Westbrook J, Feng Z, Peisach E, Persikova I, Liang Y, Gutmanas A, Berrisford J, Ikegawa Y, Chen M, Burley SK, Valenkar S, Kurisu G. Enabling depositor-initiated PDB coordinate replacement through file versioning Acta Crystallographica Section a Foundations and Advances. 75: a25-a25. DOI: 10.1107/S0108767319099744 |
0.01 |
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| 2019 |
Zardecki C, Bhikadiya C, Dutta S, Goodsell DS, Lowe R, Randle C, Tao W, Voigt M, Burley SK. Exploring biology and medicine using 3D biomacromolecules with PDB-101 Acta Crystallographica Section A. 75. DOI: 10.1107/S0108767319099732 |
1 |
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| 2018 |
Burley SK. Integrative/Hybrid Methods Structural Biology: Role of Macromolecular Crystallography. Advances in Experimental Medicine and Biology. 1105: 11-18. PMID 30617820 DOI: 10.1007/978-981-13-2200-6_2 |
0.01 |
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| 2018 |
Westbrook JD, Burley SK. How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals. Structure (London, England : 1993). PMID 30595456 DOI: 10.1107/S0108767319099902 |
1 |
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| 2018 |
Shao C, Liu Z, Yang H, Wang S, Burley SK. Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach. Scientific Data. 5: 180293. PMID 30532050 DOI: 10.1038/Sdata.2018.293 |
1 |
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| 2018 |
Di Costanzo L, Dutta S, Burley SK. Amino acid modifications for conformationally constraining naturally occurring and engineered peptide backbones: Insights from the Protein Data Bank. Biopolymers. e23230. PMID 30368772 DOI: 10.1002/Bip.23230 |
1 |
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| 2018 |
Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, et al. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Research. PMID 30357411 DOI: 10.1093/Nar/Gky1004 |
1 |
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| 2018 |
. Protein Data Bank: the single global archive for 3D macromolecular structure data. Nucleic Acids Research. PMID 30357364 DOI: 10.1093/Nar/Gky949 |
0.01 |
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| 2018 |
Markosian C, Di Costanzo L, Sekharan M, Shao C, Burley SK, Zardecki C. Analysis of impact metrics for the Protein Data Bank. Scientific Data. 5: 180212. PMID 30325351 DOI: 10.1038/Sdata.2018.212 |
1 |
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| 2018 |
Korkmaz S, Duarte JM, Prlić A, Goksuluk D, Zararsiz G, Saracbasi O, Burley SK, Rose PW. Investigation of protein quaternary structure via stoichiometry and symmetry ınformation. Plos One. 13: e0197176. PMID 29864163 DOI: 10.1371/Journal.Pone.0197176 |
1 |
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| 2018 |
Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley SK, Romo D, Almo SC, et al. Comparison of Alicyclobacillus acidocaldarius OSBS to its promiscuous NSAR/OSBS relatives. Biochemistry. PMID 29767960 DOI: 10.1021/Acs.Biochem.8B00088 |
1 |
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| 2018 |
Tsang CK, Chen M, Cheng X, Qi Y, Chen Y, Das I, Li X, Vallat B, Fu LW, Qian CN, Wang HY, White E, Burley SK, Zheng XFS. SOD1 Phosphorylation by mTORC1 Couples Nutrient Sensing and Redox Regulation. Molecular Cell. 70: 502-515.e8. PMID 29727620 DOI: 10.1016/J.Molcel.2018.03.029 |
1 |
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| 2018 |
Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, ... ... Burley SK, et al. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database : the Journal of Biological Databases and Curation. 2018. PMID 29688351 DOI: 10.1093/Database/Bay002 |
1 |
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| 2018 |
Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlić A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, ... ... Burley SK, et al. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature Biotechnology. PMID 29457794 DOI: 10.1038/Nbt.4072 |
1 |
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| 2018 |
Lawson CL, Gabanyi MJ, Westbrook J, Young J, Dutta S, Peisach E, Hudson BP, Rose P, Duarte J, Sarjeant A, Burley SK, Berman HM. New online curriculum: the PDB pipeline and data archiving Acta Crystallographica Section a Foundations and Advances. 74: a243-a243. DOI: 10.1107/S0108767318097568 |
0.01 |
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| 2018 |
Burley SK. Ligand validation for the Protein Data Bank Acta Crystallographica Section A. 74. DOI: 10.1107/S0108767318096770 |
0.01 |
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| 2018 |
Guzenko D, Duarte JM, Burley SK. Volume-ensemble search models for molecular replacement Acta Crystallographica Section A. 74. DOI: 10.1107/S0108767318096459 |
1 |
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| 2018 |
Rose AS, Burley SK. Interactive Exploration of Non-Covalent Interactions with the NGL Viewer Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1914 |
1 |
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| 2018 |
Rose AS, Sehnal D, Bliven S, Burley SK, Velankar S. Molql: Towards a Common General Purpose Molecular Query Language Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1910 |
1 |
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| 2017 |
Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, et al. Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Medicine. 9: 113. PMID 29254494 DOI: 10.1186/S13073-017-0509-Y |
1 |
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| 2017 |
Gaieb Z, Liu S, Gathiaka S, Chiu M, Yang H, Shao C, Feher VA, Walters WP, Kuhn B, Rudolph MG, Burley SK, Gilson MK, Amaro RE. D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. Journal of Computer-Aided Molecular Design. PMID 29204945 DOI: 10.1007/S10822-017-0088-4 |
1 |
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| 2017 |
Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, ... ... Burley SK, et al. Validation of Structures in the Protein Data Bank. Structure (London, England : 1993). 25: 1916-1927. PMID 29174494 DOI: 10.1016/J.Str.2017.10.009 |
1 |
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| 2017 |
Burley SK, Berman HM, Christie C, Duarte J, Feng Z, Westbrook J, Young J, Zardecki C. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Science : a Publication of the Protein Society. PMID 29067736 DOI: 10.1107/S0108767318098811 |
1 |
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| 2017 |
Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J. PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. Structure (London, England : 1993). 25: 1317-1318. PMID 28877501 DOI: 10.1016/J.Str.2017.08.001 |
1 |
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| 2017 |
Burley SK, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. Methods in Molecular Biology (Clifton, N.J.). 1607: 627-641. PMID 28573592 DOI: 10.1007/978-1-4939-7000-1_26 |
1 |
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| 2017 |
Hegde RP, Fedorov AA, Sauder JM, Burley SK, Almo SC, Ramagopal UA. The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets. Acta Crystallographica. Section F, Structural Biology Communications. 73: 184-195. PMID 28368276 DOI: 10.1107/S2053230X17002680 |
1 |
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| 2017 |
Bhattacharya R, Rose PW, Burley SK, Prlić A. Impact of genetic variation on three dimensional structure and function of proteins. Plos One. 12: e0171355. PMID 28296894 DOI: 10.1371/Journal.Pone.0171355 |
1 |
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| 2017 |
Shao C, Yang H, Westbrook JD, Young JY, Zardecki C, Burley SK. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive. Structure (London, England : 1993). PMID 28216043 DOI: 10.1107/S0108767317098142 |
1 |
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| 2017 |
Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, ... ... Burley SK, et al. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure (London, England : 1993). PMID 28190782 DOI: 10.1016/J.Str.2017.01.004 |
1 |
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| 2017 |
Duarte JM, Bliven S, Lafita A, Capitani G, Burley S. Automated evaluation of quaternary structures from protein crystals F1000research. 6. DOI: 10.7490/F1000Research.1114722.1 |
1 |
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| 2017 |
Rose AS, Burley SK. NGL – a molecular graphics library for the web F1000research. 6. DOI: 10.7490/F1000Research.1114664.1 |
1 |
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| 2017 |
Young JY, Berrisford JM, Igarashi R, Team wB, Team wO, Markley J, Nakamura H, Velankar S, Burley SK. Biocuration of experimentally-determined 3D macromolecular structures and their complexes at the wwPDB F1000research. 6. DOI: 10.7490/F1000Research.1113934.1 |
1 |
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| 2017 |
Kurisu G, Burley SK, Markley JL, Nakamura H, Velankar S. Small-molecule ligand/drug representation and validation in the Protein Data Bank Acta Crystallographica Section a Foundations and Advances. 73: C45-C45. DOI: 10.1107/S2053273317095250 |
1 |
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| 2017 |
Gutmanas A, Markley JL, Nakamura H, Burley SK, Velankar S. OneDep: wwPDB system for deposition, biocuration, validation of macromolecular structures Acta Crystallographica Section a Foundations and Advances. 73: C293-C293. DOI: 10.1107/S2053273317092804 |
1 |
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| 2017 |
Zardecki C, Christie C, Dutta S, Goodsell DS, Lowe R, Randle C, Tao W, Voigt M, Woo J, Burley SK. PDB-101: educational portal for molecular explorations through biology and medicine Acta Crystallographica Section a Foundations and Advances. 73: C670-C670. DOI: 10.1107/S2053273317089033 |
0.01 |
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| 2017 |
Zardecki C, Burley SK, Christie C, Duarte J, Feng Z, Prlic A, Rose A, Westbrook JD, Young J. RCSB PDB: structural biology views for basic and applied research Acta Crystallographica Section A. 73. DOI: 10.1107/S2053273317083978 |
1 |
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| 2017 |
Burley SK, Gabanyi MJ, Sala R, Westbrook JD, Flippen-Anderson JL, Deshmukh I, Berman HM. BioSync: an online resource for X-ray facilities worldwide Acta Crystallographica Section a Foundations and Advances. 73: C1216-C1216. DOI: 10.1107/S2053273317083589 |
0.01 |
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| 2017 |
Westbrook J, Markley J, Nakamura H, Velankar S, Burley S. wwPDB OneDep validation services Acta Crystallographica Section a Foundations and Advances. 73: C1323-C1323. DOI: 10.1107/S2053273317082523 |
1 |
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| 2017 |
Westbrook J, Markley J, Haruki, Velankar S, Burley S. PDBx/mmCIF: the foundation for the wwPDB OneDep system Acta Crystallographica Section A. 73. DOI: 10.1107/S2053273317082146 |
1 |
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| 2017 |
Duarte JM, Bliven S, Lafita A, Capitani G, Burley SK. Automated evaluation of quaternary structures from protein crystal structures Acta Crystallographica Section a Foundations and Advances. 73: a117-a117. DOI: 10.1107/S010876731709883X |
1 |
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| 2017 |
Burley SK. Perspectives on the cryoEM 'resolution revolution' from the Protein Data Bank Acta Crystallographica Section A. 73. DOI: 10.1107/S0108767317097793 |
0.01 |
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| 2017 |
Burley SK. Research data management: structure factors and atomic coordinates Acta Crystallographica Section A. 73. DOI: 10.1107/S0108767317096866 |
0.01 |
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| 2017 |
Burley S. Demonstrating the value of three-dimensional macromolecular structures Acta Crystallographica Section A. 73. DOI: 10.1107/S0108767317095940 |
0.01 |
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| 2016 |
Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W. A public database of macromolecular diffraction experiments. Acta Crystallographica. Section D, Structural Biology. 72: 1181-1193. PMID 27841751 DOI: 10.1107/S205327331708946X |
0.01 |
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| 2016 |
Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, ... ... Burley SK, et al. The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Research. PMID 27794042 DOI: 10.1093/Nar/Gkw1000 |
1 |
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| 2016 |
Gathiaka S, Liu S, Chiu M, Yang H, Stuckey JA, Kang YN, Delproposto J, Kubish G, Dunbar JB, Carlson HA, Burley SK, Walters WP, Amaro RE, Feher VA, Gilson MK. D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions. Journal of Computer-Aided Molecular Design. 30: 651-668. PMID 27696240 DOI: 10.1007/S10822-016-9946-8 |
1 |
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| 2016 |
Costanzo LD, Ghosh S, Zardecki C, Burley SK. Using the Tools and Resources of the RCSB Protein Data Bank. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 55: 1.9.1-1.9.35. PMID 27603019 DOI: 10.1002/Cpbi.13 |
1 |
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| 2016 |
Prlić A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW. Integrating Genomic Information with Protein Sequence and 3D Atomic Level Structure at the RCSB Protein Data Bank. Bioinformatics (Oxford, England). PMID 27551105 DOI: 10.1093/Bioinformatics/Btw547 |
1 |
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| 2016 |
Berman HM, Burley SK, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. The archiving and dissemination of biological structure data. Current Opinion in Structural Biology. 40: 17-22. PMID 27450113 DOI: 10.1016/J.Sbi.2016.06.018 |
1 |
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| 2016 |
Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley SK. DCC: a Swiss army knife for structure factor analysis and validation. Journal of Applied Crystallography. 49: 1081-1084. PMID 27275151 DOI: 10.1107/S1600576716004428 |
1 |
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| 2016 |
Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, et al. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure (London, England : 1993). 24: 502-8. PMID 27050687 DOI: 10.1016/J.Str.2016.02.017 |
1 |
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| 2016 |
Rose P, Prlic A, Bi C, Christie C, Duarte J, Fang Z, Green RK, Kalro T, Randle C, Westbrook J, Woo J, Yang H, Young J, Zardecki C, Berman H, ... Burley S, et al. RCSB Protein Data Bank: Views of structural biology for basic and applied research F1000research. 5. DOI: 10.7490/F1000Research.1112696.1 |
1 |
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| 2016 |
Zardecki C, Dutta S, Goodsell DS, Voigt M, Burley SK. RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules Journal of Chemical Education. 93: 569-575. DOI: 10.1021/Acs.Jchemed.5B00404 |
1 |
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| 2015 |
Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, et al. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure (London, England : 1993). PMID 26095030 DOI: 10.1016/J.Str.2015.05.013 |
1 |
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| 2015 |
Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology. Plos Biology. 13: e1002140. PMID 25942442 DOI: 10.1371/Journal.Pbio.1002140 |
1 |
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| 2015 |
Wu TJ, Wang X, Zhang Y, Meng L, Kerrigan JE, Burley SK, Zheng XF. Identification of a Non-Gatekeeper Hot Spot for Drug-Resistant Mutations in mTOR Kinase. Cell Reports. 11: 446-59. PMID 25865887 DOI: 10.1016/J.Celrep.2015.03.040 |
1 |
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| 2015 |
Rose PW, Prli? A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Research. 43: D345-56. PMID 25428375 DOI: 10.1093/Nar/Gku1214 |
1 |
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| 2015 |
Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology Plos Biology. 13. DOI: 10.1371/journal.pbio.1002140 |
1 |
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| 2014 |
Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallographica. Section D, Biological Crystallography. 70: 2780. PMID 25286863 DOI: 10.1107/S1399004714020513 |
1 |
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| 2014 |
Manjasetty BA, Chance MR, Burley SK, Panjikar S, Almo SC. Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production. Biotechnology Reports (Amsterdam, Netherlands). 3: 73-85. PMID 25170437 DOI: 10.1016/J.Btre.2014.06.009 |
1 |
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| 2014 |
Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley SK, Chait BT, Almo SC, Rout MP, et al. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Molecular & Cellular Proteomics : McP. 13: 2911-26. PMID 25139911 DOI: 10.1074/Mcp.M114.040915 |
1 |
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| 2014 |
Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, et al. Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 53: 4727-38. PMID 24955762 DOI: 10.1021/Bi500595C |
1 |
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| 2014 |
Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, et al. Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. Proceedings of the National Academy of Sciences of the United States of America. 111: 8535-40. PMID 24872444 DOI: 10.1073/Pnas.1318703111 |
1 |
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| 2013 |
Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley SK, Almo SC, Glasner ME. Divergent evolution of ligand binding in the o-succinylbenzoate synthase family. Biochemistry. 52: 7512-21. PMID 24060347 DOI: 10.1021/Bi401176D |
1 |
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| 2013 |
Daughtry KD, Huang H, Malashkevich V, Patskovsky Y, Liu W, Ramagopal U, Sauder JM, Burley SK, Almo SC, Dunaway-Mariano D, Allen KN. Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry. 52: 5372-86. PMID 23848398 DOI: 10.1021/Bi400659K |
1 |
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| 2013 |
Goodsell DS, Burley SK, Berman HM. Revealing structural views of biology. Biopolymers. 99: 817-24. PMID 23821527 DOI: 10.1002/Bip.22338 |
1 |
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| 2013 |
Almo SC, Garforth SJ, Hillerich BS, Love JD, Seidel RD, Burley SK. Protein production from the structural genomics perspective: achievements and future needs. Current Opinion in Structural Biology. 23: 335-44. PMID 23642905 DOI: 10.1016/J.Sbi.2013.02.014 |
1 |
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| 2013 |
Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, ... Burley SK, et al. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure (London, England : 1993). 21: 560-71. PMID 23499021 DOI: 10.1016/J.Str.2013.02.005 |
1 |
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| 2013 |
Palani K, Burley SK, Swaminathan S. Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 15-9. PMID 23295479 DOI: 10.1107/S1744309112047276 |
1 |
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| 2013 |
Burley SK. PDB40: The Protein Data Bank celebrates its 40th birthday. Biopolymers. 99: 165-7. PMID 23280389 DOI: 10.1002/Bip.22182 |
0.01 |
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| 2013 |
Knapp S, Arruda P, Blagg J, Burley S, Drewry DH, Edwards A, Fabbro D, Gillespie P, Gray NS, Kuster B, Lackey KE, Mazzafera P, Tomkinson NC, Willson TM, Workman P, et al. A public-private partnership to unlock the untargeted kinome. Nature Chemical Biology. 9: 3-6. PMID 23238671 DOI: 10.1038/Nchembio.1113 |
1 |
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| 2013 |
Burley S. RICHARD CRONIN, Paper Pellets: British Literary Culture after Waterloo. Notes and Queries. 60: 614-615. DOI: 10.1093/notesj/gjt168 |
0.01 |
|
| 2012 |
Palani K, Kumaran D, Burley SK, Swaminathan S. Structure of a periplasmic glucose-binding protein from Thermotoga maritima. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 68: 1460-4. PMID 23192024 DOI: 10.1107/S1744309112045241 |
1 |
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| 2012 |
Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley SK, Tabita FR, Almo SC, Sweedler JS, Gerlt JA. 1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum Biochemistry. 51: 8324-8326. PMID 23035785 DOI: 10.1021/Bi301215G |
1 |
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| 2012 |
Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley SK, Almo SC, Mehta G, Macmillan AM. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases Rna. 18: 2020-2028. PMID 23006625 DOI: 10.1261/Rna.033100.112 |
1 |
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| 2012 |
Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, ... ... Burley SK, et al. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins. 80: 2110-6. PMID 22544723 DOI: 10.1002/Prot.24102 |
1 |
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| 2012 |
Wasserman SR, Koss JW, Sojitra ST, Morisco LL, Burley SK. Rapid-access, high-throughput synchrotron crystallography for drug discovery. Trends in Pharmacological Sciences. 33: 261-7. PMID 22521107 DOI: 10.1016/J.Tips.2012.03.009 |
1 |
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| 2012 |
Hobbs ME, Malashkevich V, Williams HJ, Xu C, Sauder JM, Burley SK, Almo SC, Raushel FM. Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry. 51: 3497-507. PMID 22475079 DOI: 10.1021/Bi300307B |
1 |
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| 2012 |
Agarwal R, Burley SK, Swaminathan S. Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase. Proteins. 80: 261-8. PMID 22072612 DOI: 10.1002/Prot.23202 |
1 |
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| 2012 |
Burley S. PAMELA CLEMIT, ed., The Letters of William Godwin. Volume I: 1778-1797. Notes and Queries. 59: 605-606. DOI: 10.1093/notesj/gjs171 |
0.01 |
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| 2012 |
Joong Kim S, Sampathkumar P, Fernandez-Martinez J, Phillips J, Schneidman D, Matsui T, Tsuruta H, Sauder M, Burley SK, Rout M, Sali A. Integrative Structure Determination of the Components of the Nuclear Pore Complex by X-Ray Crystallography, Small Angle X-Ray Scattering, Electron Microscopy, NMR, and Comparative Modeling Biophysical Journal. 102: 619a. DOI: 10.1016/J.Bpj.2011.11.3371 |
1 |
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| 2011 |
Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley SK, Swaminathan S, Lindahl PA, Raushel FM. The catalase activity of diiron adenine deaminase. Protein Science : a Publication of the Protein Society. 20: 2080-94. PMID 21998098 DOI: 10.1002/Pro.748 |
1 |
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| 2011 |
Suttisansanee U, Lau K, Lagishetty S, Rao KN, Swaminathan S, Sauder JM, Burley SK, Honek JF. Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum. The Journal of Biological Chemistry. 286: 38367-74. PMID 21914803 DOI: 10.1074/Jbc.M111.251603 |
1 |
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| 2011 |
Burley SK, Sonenberg N. Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD. Molecular Cell. 43: 163-5. PMID 21777807 DOI: 10.1016/J.Molcel.2011.07.003 |
1 |
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| 2011 |
Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (London, England : 1993). 19: 930-44. PMID 21742260 DOI: 10.1016/J.Str.2011.05.002 |
1 |
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| 2011 |
Goble AM, Zhang Z, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. 50: 6589-97. PMID 21710971 DOI: 10.1021/Bi200868U |
1 |
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| 2011 |
Shi W, Punta M, Bohon J, Sauder JM, D'Mello R, Sullivan M, Toomey J, Abel D, Lippi M, Passerini A, Frasconi P, Burley SK, Rost B, Chance MR. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Research. 21: 898-907. PMID 21482623 DOI: 10.1101/Gr.115097.110 |
1 |
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| 2011 |
Bagaria A, Kumaran D, Burley SK, Swaminathan S. Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins. 79: 1352-7. PMID 21387413 DOI: 10.1002/Prot.22965 |
1 |
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| 2011 |
Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, ... ... Burley SK, et al. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins. 79: 1672-7. PMID 21365675 DOI: 10.1002/Prot.22973 |
1 |
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| 2011 |
Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM. Enzymatic deamination of the epigenetic base N-6-methyladenine. Journal of the American Chemical Society. 133: 2080-3. PMID 21275375 DOI: 10.1021/Ja110157U |
1 |
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| 2011 |
Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM. Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. 50: 1917-27. PMID 21247091 DOI: 10.1021/Bi101788N |
1 |
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| 2011 |
Zhang Z, Zhou R, Sauder JM, Tonge PJ, Burley SK, Swaminathan S. Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila. Journal of Molecular Biology. 406: 313-24. PMID 21185305 DOI: 10.1016/J.Jmb.2010.12.011 |
1 |
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| 2011 |
Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, ... Burley SK, et al. ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research. 39: D465-74. PMID 21097780 DOI: 10.1093/nar/gkq1091 |
1 |
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| 2011 |
Burley S. Duncan Wu, William Hazlitt: The First Modern Man (Oxford and New York: Oxford University Press, 2008), pp. xxvi + 577. £25 hardback. 9780199549580. Romanticism. 17: 126-131. DOI: 10.3366/rom.2011.0015 |
0.01 |
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| 2011 |
Wasserman SR, Holdmann MM, Koss JW, Lewis D, Morisco LL, Sojitra ST, Visscher KD, Burley SK. Automated synchrotron crystallography for drug discovery: the LRL-CAT beamline at the APS Acta Crystallographica Section A. 67. DOI: 10.1107/S0108767311098941 |
1 |
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| 2010 |
Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley SK, Leigh JA, Gonen T. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure (London, England : 1993). 18: 1512-21. PMID 21070950 DOI: 10.1016/J.Str.2010.08.014 |
1 |
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| 2010 |
Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley SK, Rutter J. Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation. The Journal of Biological Chemistry. 285: 41034-43. PMID 20943661 DOI: 10.1074/Jbc.M110.157594 |
1 |
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| 2010 |
Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, ... ... Burley SK, et al. Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 78: 3056-62. PMID 20737437 DOI: 10.1002/Prot.22829 |
1 |
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| 2010 |
Gheyi T, Rodgers L, Romero R, Sauder JM, Burley SK. Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination. Journal of the American Society For Mass Spectrometry. 21: 1795-801. PMID 20685133 DOI: 10.1016/J.Jasms.2010.06.015 |
1 |
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| 2010 |
Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo SC, Raushel FM. Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry. 49: 6791-803. PMID 20604542 DOI: 10.1021/Bi100897U |
1 |
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| 2010 |
Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase . Biochemistry. 49: 4374-82. PMID 20415463 DOI: 10.1021/Bi100252S |
1 |
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| 2010 |
Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, ... ... Burley SK, et al. Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145. Proteins. 78: 1992-8. PMID 20310066 DOI: 10.1002/Prot.22707 |
1 |
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| 2010 |
Sampathkumar P, Ozyurt SA, Miller SA, Bain KT, Rutter ME, Gheyi T, Abrams B, Wang Y, Atwell S, Luz JG, Thompson DA, Wasserman SR, Emtage JS, Park EC, Rongo C, ... ... Burley SK, et al. Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1. Journal of Molecular Biology. 397: 883-92. PMID 20156452 DOI: 10.1016/J.Jmb.2010.02.017 |
1 |
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| 2010 |
Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. Safeguarding the integrity of protein archive. Nature. 463: 425. PMID 20110969 DOI: 10.1038/463425C |
1 |
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| 2010 |
Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM. The hunt for 8-oxoguanine deaminase. Journal of the American Chemical Society. 132: 1762-3. PMID 20088583 DOI: 10.1021/Ja909817D |
1 |
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| 2010 |
Lakshminarasimhan D, Eswaramoorthy S, Burley SK, Swaminathan S. Structure of YqgQ protein from Bacillus subtilis, a conserved hypothetical protein. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 8-11. PMID 20057058 DOI: 10.1107/S1744309109047009 |
1 |
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| 2010 |
Ragumani S, Sauder JM, Burley SK, Swaminathan S. Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis. Proteins. 78: 487-91. PMID 19787770 DOI: 10.1002/Prot.22585 |
1 |
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| 2009 |
Buchanan SG, Hendle J, Lee PS, Smith CR, Bounaud PY, Jessen KA, Tang CM, Huser NH, Felce JD, Froning KJ, Peterman MC, Aubol BE, Gessert SF, Sauder JM, Schwinn KD, ... ... Burley SK, et al. SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo. Molecular Cancer Therapeutics. 8: 3181-90. PMID 19934279 DOI: 10.1158/1535-7163.Mct-09-0477 |
1 |
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| 2009 |
Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley SK, Almo SC, Jacobson MP, Gerlt JA. Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis . Biochemistry. 48: 11546-58. PMID 19883118 DOI: 10.1021/Bi901731C |
1 |
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| 2009 |
Sampaleanu LM, Bonanno JB, Ayers M, Koo J, Tammam S, Burley SK, Almo SC, Burrows LL, Howell PL. Periplasmic domains of Pseudomonas aeruginosa PilN and PilO form a stable heterodimeric complex. Journal of Molecular Biology. 394: 143-59. PMID 19857646 DOI: 10.1016/J.Jmb.2009.09.037 |
1 |
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| 2009 |
Robert F, Williams C, Yan Y, Donohue E, Cencic R, Burley SK, Pelletier J. Blocking UV-induced eIF2alpha phosphorylation with small molecule inhibitors of GCN2. Chemical Biology & Drug Design. 74: 57-67. PMID 19519745 DOI: 10.1111/J.1747-0285.2009.00827.X |
0.04 |
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| 2009 |
Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. 48: 4567-76. PMID 19358546 DOI: 10.1021/Bi900453U |
1 |
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| 2009 |
Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM. Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes. Biochemistry. 48: 3730-42. PMID 19281183 DOI: 10.1021/Bi900111Q |
1 |
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| 2009 |
Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ. Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proceedings of the National Academy of Sciences of the United States of America. 106: 4154-9. PMID 19251641 DOI: 10.1073/Pnas.0813360106 |
1 |
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| 2009 |
Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA. Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Biochemistry. 48: 1445-53. PMID 19220063 DOI: 10.1021/Bi802277H |
1 |
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| 2009 |
Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, et al. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. Journal of Structural and Functional Genomics. 10: 107-25. PMID 19219566 DOI: 10.1007/S10969-008-9056-5 |
1 |
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| 2009 |
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/J.Str.2008.12.014 |
1 |
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| 2009 |
Burley S. The Lost Polemics of William Hazlitt (1737-1820) The Review of English Studies. 61: 259-275. DOI: 10.1093/res/hgp059 |
0.01 |
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| 2009 |
Burley S. DANIEL WHITE, Early Romanticism and Religious Dissent. Notes and Queries. 56: 294-295. DOI: 10.1093/notesj/gjp068 |
0.01 |
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| 2009 |
Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA. Evolution of Enzymatic Activities in the Enolase Superfamily: Stereochemically Distinct Mechanisms in Two Families ofcis,cis-Muconate Lactonizing Enzymes Biochemistry. 48: 2569-2570. DOI: 10.1021/Bi900265W |
0.01 |
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| 2008 |
Rao KN, Burley SK, Swaminathan S. UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function. Plos One. 3: e3903. PMID 19079550 DOI: 10.1371/Journal.Pone.0003903 |
1 |
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| 2008 |
Sauder MJ, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S, Burley SK. High throughput protein production and crystallization at NYSGXRC. Methods in Molecular Biology (Clifton, N.J.). 426: 561-75. PMID 18542890 DOI: 10.1007/978-1-60327-058-8_37 |
1 |
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| 2008 |
Ragumani S, Kumaran D, Burley SK, Swaminathan S. Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae. Proteins. 72: 1096-103. PMID 18498110 DOI: 10.1002/Prot.22095 |
1 |
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| 2008 |
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. A common catalytic mechanism for proteins of the HutI family. Biochemistry. 47: 5608-15. PMID 18442260 DOI: 10.1021/Bi800180G |
1 |
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| 2008 |
O'Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley SK, Deininger MW. SGX393 inhibits the CML mutant Bcr-AblT315I and preempts in vitro resistance when combined with nilotinib or dasatinib. Proceedings of the National Academy of Sciences of the United States of America. 105: 5507-12. PMID 18367669 DOI: 10.1073/Pnas.0800587105 |
1 |
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| 2008 |
Agarwal R, Burley SK, Swaminathan S. A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure. Proteins. 71: 1038-41. PMID 18247349 DOI: 10.1002/Prot.21962 |
1 |
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| 2008 |
Agarwal R, Burley SK, Swaminathan S. Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex. The Journal of Biological Chemistry. 283: 8946-53. PMID 18245086 DOI: 10.1074/Jbc.M708945200 |
1 |
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| 2008 |
Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, ... ... Burley SK, et al. Protein production and purification. Nature Methods. 5: 135-46. PMID 18235434 DOI: 10.1038/Nmeth.F.202 |
1 |
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| 2008 |
Burley SK, Joachimiak A, Montelione GT, Wilson IA. Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers Structure. 16: 5-11. PMID 18184575 DOI: 10.1016/J.Str.2007.12.002 |
1 |
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| 2008 |
Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S. X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. 71: 534-40. PMID 18175317 DOI: 10.1002/Prot.21888 |
1 |
|
| 2008 |
Rao KN, Burley SK, Swaminathan S. Crystal structure of a conserved protein of unknown function (MJ1651) from Methanococcus jannaschii. Proteins. 70: 572-7. PMID 17910070 DOI: 10.1002/Prot.21646 |
1 |
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| 2008 |
Burley S, Wasserman S, Smith D, Koss J, Morisco L. Rapid synchrotron X-ray crystallography for drug discovery using the SGX-CAT beamline at the APS Acta Crystallographica Section a Foundations of Crystallography. 64: C29-C29. DOI: 10.1107/S0108767308099108 |
0.01 |
|
| 2008 |
Burley S. Hazlitt's Preface to Political Essays and Walter Scott's Old Mortality Notes and Queries. 55: 437-439. DOI: 10.1093/notesj/gjn131 |
0.01 |
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| 2007 |
Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, ... ... Burley SK, et al. Structural genomics of protein phosphatases. Journal of Structural and Functional Genomics. 8: 121-40. PMID 18058037 DOI: 10.1007/S10969-007-9036-1 |
1 |
|
| 2007 |
Tyagi R, Burley SK, Swaminathan S. X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family. Bmc Structural Biology. 7: 62. PMID 17908300 DOI: 10.1186/1472-6807-7-62 |
1 |
|
| 2007 |
Tyagi R, Kumaran D, Burley SK, Swaminathan S. X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. 69: 652-8. PMID 17640072 DOI: 10.1002/Prot.21559 |
1 |
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| 2007 |
Agarwal R, Burley SK, Swaminathan S. Structural analysis of a ternary complex of allantoate amidohydrolase from Escherichia coli reveals its mechanics. Journal of Molecular Biology. 368: 450-63. PMID 17362992 DOI: 10.1016/J.Jmb.2007.02.028 |
1 |
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| 2007 |
Sabini E, Hazra S, Konrad M, Burley SK, Lavie A. Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Research. 35: 186-92. PMID 17158155 DOI: 10.1093/Nar/Gkl1038 |
1 |
|
| 2007 |
O’Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley SK, Deininger MW. SGX70393 Inhibits Bcr-AblT315I In Vitro and In Vivo and Completely Suppresses Resistance When Combined with Nilotinib or Dasatinib. Blood. 110: 535-535. DOI: 10.1182/Blood.V110.11.535.535 |
1 |
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| 2007 |
Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S. Erratum: Mechanism of action of a flavincontaining monooxygenase (Proceedings of the National Academy of Sciences of the United States of America (2006) 103, (9832-9837) DOI: 10.1073/pnas.0602398103) Proceedings of the National Academy of Sciences of the United States of America. 104. DOI: 10.1073/Pnas.0707147104 |
1 |
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| 2006 |
Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, et al. Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules Structure. 14: 1211-1217. PMID 16955948 DOI: 10.1016/J.Str.2006.06.005 |
1 |
|
| 2006 |
Rao KN, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins. 65: 514-8. PMID 16909422 DOI: 10.1002/Prot.21079 |
1 |
|
| 2006 |
Kumaran D, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires". Proteins. 64: 851-62. PMID 16838328 DOI: 10.1002/Prot.21039 |
1 |
|
| 2006 |
Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications. Protein Science : a Publication of the Protein Society. 15: 1735-44. PMID 16815921 DOI: 10.1110/Ps.062096606 |
1 |
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| 2006 |
Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S. Mechanism of action of a flavin-containing monooxygenase. Proceedings of the National Academy of Sciences of the United States of America. 103: 9832-7. PMID 16777962 DOI: 10.1073/Pnas.0602398103 |
1 |
|
| 2006 |
Bellsolell L, Cho-Park PF, Poulin F, Sonenberg N, Burley SK. Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1. Structure (London, England : 1993). 14: 913-23. PMID 16698552 DOI: 10.1016/J.Str.2006.03.012 |
1 |
|
| 2006 |
Burley SK. Cancer and kinases: reports from the front line. Genome Biology. 7: 314. PMID 16677415 DOI: 10.1186/Gb-2006-7-4-314 |
0.01 |
|
| 2006 |
Nair SK, Burley SK. Structural aspects of interactions within the Myc/Max/Mad network. Current Topics in Microbiology and Immunology. 302: 123-43. PMID 16620027 DOI: 10.1007/3-540-32952-8_5 |
1 |
|
| 2006 |
Agarwal R, Bonanno JB, Burley SK, Swaminathan S. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. Acta Crystallographica. Section D, Biological Crystallography. 62: 383-91. PMID 16552139 DOI: 10.1107/S0907444906001600 |
1 |
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| 2006 |
Seetharaman J, Rajashankar KR, Solorzano V, Kniewel R, Lima CD, Bonanno JB, Burley SK, Swaminathan S. Crystal structures of two putative phosphoheptose isomerases. Proteins. 63: 1092-6. PMID 16477602 DOI: 10.1002/Prot.20908 |
1 |
|
| 2006 |
Seetharaman J, Kumaran D, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis. Proteins. 63: 1087-91. PMID 16475182 DOI: 10.1002/Prot.20924 |
1 |
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| 2006 |
Kelner MJ, Giles FJ, Feldman EJ, Roboz GJ, Deangelo DJ, Burley SK. Dosing of troxacitabine (Troxatyl [T], SGX-145) based on renal function Journal of Clinical Oncology. 24: 2025-2025. DOI: 10.1200/jco.2006.24.18_suppl.2025 |
0.04 |
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| 2006 |
O’Hare T, Eide CA, Tyner JW, Wong MJ, Smith CA, Corbin AS, Buchanan S, Jessen KA, Tang C, Holme K, Burley SK, Deininger MW. Inhibition of T315I Bcr-Abl and Other Imatinib-Resistant Bcr-Abl Mutants by the Selective Abl Kinase Inhibitor SGX70393. Blood. 108: 1373-1373. DOI: 10.1182/Blood.V108.11.1373.1373 |
1 |
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| 2005 |
Badger J, Hendle J, Burley SK, Kissinger CR. Deposit3D: a tool for automating structure depositions to the Protein Data Bank. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 818-20. PMID 16511167 DOI: 10.1107/S1744309105026126 |
1 |
|
| 2005 |
Matte A, Louie GV, Sivaraman J, Cygler M, Burley SK. Structure of the pseudouridine synthase RsuA from Haemophilus influenzae. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 350-4. PMID 16511038 DOI: 10.1107/S1744309105005920 |
0.01 |
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| 2005 |
Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, ... ... Burley SK, et al. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. Journal of Structural and Functional Genomics. 6: 225-32. PMID 16211523 DOI: 10.1007/S10969-005-6827-0 |
1 |
|
| 2005 |
Gao X, Bain K, Bonanno JB, Buchanan M, Henderson D, Lorimer D, Marsh C, Reynes JA, Sauder JM, Schwinn K, Thai C, Burley SK. High-throughput limited proteolysis/mass spectrometry for protein domain elucidation Journal of Structural and Functional Genomics. 6: 129-134. PMID 16211509 DOI: 10.1007/S10969-005-1918-5 |
1 |
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| 2005 |
Burley SK, Park F. Meeting the challenges of drug discovery: a multidisciplinary re-evaluation of current practices. Keystone Symposium 'Meeting the Challenges of Drug Discovery', Vancouver, Canada, 15-19 January 2005. Genome Biology. 6: 330. PMID 15998459 DOI: 10.1186/Gb-2005-6-7-330 |
0.01 |
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| 2005 |
Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley SK. Structural basis for autoinhibition and mutational activation of eukaryotic initiation factor 2α protein kinase GCN2 Journal of Biological Chemistry. 280: 29289-29299. PMID 15964839 DOI: 10.1074/Jbc.M504096200 |
1 |
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| 2005 |
Sickmier EA, Brekasis D, Paranawithana S, Bonanno JB, Paget MS, Burley SK, Kielkopf CL. X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing. Structure (London, England : 1993). 13: 43-54. PMID 15642260 DOI: 10.1016/J.Str.2004.10.012 |
1 |
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| 2005 |
Burley SK. Application of FASTTM Fragment-Based Lead Discovery and Structure-Guided Design to Discovery of Small Molecule Inhibitors of BCR-ABL Tyrosine Kinase Active Against the T315I Imatinib-Resistant Mutant. Blood. 106: 698-698. DOI: 10.1182/blood.v106.11.698.698 |
0.01 |
|
| 2005 |
Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley SK. Structural basis for autoinhibition and activation of eIF2α protein kinase GCN2 Acta Crystallographica Section a Foundations of Crystallography. 61: c233-c234. DOI: 10.1107/S0108767305090045 |
1 |
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| 2004 |
Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK. She2p is a novel RNA binding protein with a basic helical hairpin motif. Cell. 119: 491-502. PMID 15537539 DOI: 10.1016/J.Cell.2004.10.018 |
1 |
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| 2004 |
Atwell S, Adams JM, Badger J, Buchanan MD, Feil IK, Froning KJ, Gao X, Hendle J, Keegan K, Leon BC, Müller-Dieckmann HJ, Nienaber VL, Noland BW, Post K, Rajashankar KR, ... ... Burley SK, et al. A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase. The Journal of Biological Chemistry. 279: 55827-32. PMID 15507431 DOI: 10.1074/Jbc.M409792200 |
1 |
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| 2004 |
Roll-Mecak A, Alone P, Cao C, Dever TE, Burley SK. X-ray Structure of Translation Initiation Factor eIF2γ: Implications for tRNA and eIF2α binding Journal of Biological Chemistry. 279: 10634-10642. PMID 14688270 DOI: 10.1074/Jbc.M310418200 |
1 |
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| 2004 |
Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM. Structural bases for CRMP function in plexin-dependent semaphorin3A signaling. The Embo Journal. 23: 9-22. PMID 14685275 DOI: 10.1038/Sj.Emboj.7600021 |
1 |
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| 2004 |
Lewis HA, Buchanan SG, Burley SK, Conners K, Dickey M, Dorwart M, Fowler R, Gao X, Guggino WB, Hendrickson WA, Hunt JF, Kearins MC, Lorimer D, Maloney PC, Post KW, et al. Structure of nucleotide-binding domain 1 of the cystic fibrosis transmembrane conductance regulator. The Embo Journal. 23: 282-93. PMID 14685259 DOI: 10.1038/Sj.Emboj.7600040 |
1 |
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| 2004 |
Burley S. John Stoddart's Remarks on Local Scenery and Manners in Scotland (1801) and the Snowdon Episode of The Prelude (1805) Notes and Queries. 51: 148-149. DOI: 10.1093/nq/51.2.148 |
0.01 |
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| 2003 |
Padyana AK, Burley SK. Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution. Structure (London, England : 1993). 11: 1005-13. PMID 12906831 DOI: 10.1016/S0969-2126(03)00159-X |
1 |
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| 2003 |
Kamada K, Hanaoka F, Burley SK. Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition. Molecular Cell. 11: 875-84. PMID 12718874 DOI: 10.1016/S1097-2765(03)00097-2 |
1 |
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| 2003 |
Burley SK, Bonanno JB. Structural genomics. Methods of Biochemical Analysis. 44: 591-612. PMID 12647406 |
1 |
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| 2003 |
Trester-Zedlitz M, Kamada K, Burley SK, Fenyö D, Chait BT, Muir TW. A modular cross-linking approach for exploring protein interactions. Journal of the American Chemical Society. 125: 2416-25. PMID 12603129 DOI: 10.1021/Ja026917A |
1 |
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| 2003 |
Kamada K, Roeder RG, Burley SK. Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF. Proceedings of the National Academy of Sciences of the United States of America. 100: 2296-9. PMID 12591941 DOI: 10.1073/Pnas.262798199 |
1 |
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| 2003 |
Zuberek J, Wyslouch-Cieszynska A, Niedzwiecka A, Dadlez M, Stepinski J, Augustyniak W, Gingras AC, Zhang Z, Burley SK, Sonenberg N, Stolarski R, Darzynkiewicz E. Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein. Rna (New York, N.Y.). 9: 52-61. PMID 12554876 DOI: 10.1261/Rna.2133403 |
1 |
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| 2003 |
Nair SK, Burley SK. X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors. Cell. 112: 193-205. PMID 12553908 DOI: 10.1016/S0092-8674(02)01284-9 |
1 |
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| 2003 |
Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley SK. X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus. Proteins. 50: 170-3. PMID 12471609 DOI: 10.1002/Prot.10272 |
1 |
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| 2003 |
Pilloff D, Dabovic K, Romanowski MJ, Bonanno JB, Doherty M, Burley SK, Leyh TS. The kinetic mechanism of phosphomevalonate kinase. The Journal of Biological Chemistry. 278: 4510-5. PMID 12424232 DOI: 10.1074/Jbc.M210551200 |
1 |
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| 2003 |
Burley SK. Book Review Rosalind Franklin: The Dark Lady of DNA By Brenda Maddox. 380 pp., illustrated. New York, HarperCollins, 2002. $29.95. 0-06-018407-8 New England Journal of Medicine. 348: 1729-1730. DOI: 10.1056/NEJM200304243481724 |
0.01 |
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| 2002 |
Shin BS, Maag D, Roll-Mecak A, Arefin MS, Burley SK, Lorsch JR, Dever TE. Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity. Cell. 111: 1015-25. PMID 12507428 DOI: 10.1016/S0092-8674(02)01171-6 |
1 |
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| 2002 |
Marcotrigiano J, Burley SK. Structural biology of eIF4F: mRNA recognition and preparation in eukaryotic translation initiation. Advances in Protein Chemistry. 61: 269-97. PMID 12461826 DOI: 10.1016/S0065-3233(02)61007-1 |
1 |
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| 2002 |
Ray SS, Bonanno JB, Rajashankar KR, Pinho MG, He G, De Lencastre H, Tomasz A, Burley SK. Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (London, England : 1993). 10: 1499-508. PMID 12429091 DOI: 10.1016/S0969-2126(02)00880-8 |
1 |
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| 2002 |
Kielkopf CL, Burley SK. X-ray structures of threonine aldolase complexes: structural basis of substrate recognition. Biochemistry. 41: 11711-20. PMID 12269813 DOI: 10.1021/Bi020393+ |
1 |
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| 2002 |
Burley SK, Bonanno JB. Structuring the universe of proteins. Annual Review of Genomics and Human Genetics. 3: 243-62. PMID 12194989 DOI: 10.1146/Annurev.Genom.3.022502.103227 |
1 |
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| 2002 |
Burley SK, Bonanno JB. Structural genomics of proteins from conserved biochemical pathways and processes. Current Opinion in Structural Biology. 12: 383-91. PMID 12127459 DOI: 10.1016/S0959-440X(02)00330-5 |
1 |
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| 2002 |
Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK. X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Proteins. 48: 431-6. PMID 12112709 DOI: 10.1002/Prot.10151 |
1 |
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| 2002 |
Groft CM, Burley SK. Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Molecular Cell. 9: 1273-83. PMID 12086624 DOI: 10.1016/S1097-2765(02)00555-5 |
1 |
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| 2002 |
Niedzwiecka A, Marcotrigiano J, Stepinski J, Jankowska-Anyszka M, Wyslouch-Cieszynska A, Dadlez M, Gingras AC, Mak P, Darzynkiewicz E, Sonenberg N, Burley SK, Stolarski R. Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. Journal of Molecular Biology. 319: 615-35. PMID 12054859 DOI: 10.1016/S0022-2836(02)00328-5 |
1 |
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| 2002 |
Romanowski MJ, Soccio RE, Breslow JL, Burley SK. Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain Proceedings of the National Academy of Sciences of the United States of America. 99: 6949-6954. PMID 12011453 DOI: 10.1073/Pnas.052140699 |
1 |
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| 2002 |
Soccio RE, Adams RM, Romanowski MJ, Sehayek E, Burley SK, Breslow JL. The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. Proceedings of the National Academy of Sciences of the United States of America. 99: 6943-8. PMID 12011452 DOI: 10.1073/Pnas.052143799 |
1 |
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| 2002 |
Romanowski MJ, Bonanno JB, Burley SK. Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily Proteins: Structure, Function and Genetics. 47: 568-571. PMID 12001237 DOI: 10.1002/Prot.10118 |
1 |
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| 2002 |
Romanowski MJ, Bonanno JB, Burley SK. Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold Proteins: Structure, Function and Genetics. 47: 563-567. PMID 12001236 DOI: 10.1002/Prot.10121 |
1 |
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| 2002 |
Romanowski MJ, Burley SK. Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam Proteins: Structure, Function and Genetics. 47: 558-562. PMID 12001235 DOI: 10.1002/Prot.10099 |
1 |
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| 2002 |
Burley SK, Kamada K. Transcription factor complexes. Current Opinion in Structural Biology. 12: 225-30. PMID 11959501 DOI: 10.1016/S0959-440X(02)00314-7 |
1 |
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| 2002 |
Romanowski MJ, Gibney SA, Burley SK. Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17 Proteins: Structure, Function and Genetics. 47: 403-407. PMID 11948793 DOI: 10.1002/Prot.10102 |
1 |
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| 2002 |
Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, et al. Structural genomics: a pipeline for providing structures for the biologist. Protein Science : a Publication of the Protein Society. 11: 723-38. PMID 11910018 DOI: 10.1110/Ps.4570102 |
1 |
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| 2002 |
Wolf E, De Angelis J, Khalil EM, Cole PA, Burley SK. X-ray crystallographic studies of serotonin N-acetyltransferase catalysis and inhibition Journal of Molecular Biology. 317: 215-224. PMID 11902838 DOI: 10.1006/Jmbi.2001.5371 |
1 |
|
| 2002 |
Scheibner KA, De Angelis J, Burley SK, Cole PA. Investigation of the roles of catalytic residues in serotonin N-acetyltransferase. The Journal of Biological Chemistry. 277: 18118-26. PMID 11884405 DOI: 10.1074/Jbc.M200595200 |
1 |
|
| 2002 |
Deo RC, Groft CM, Rajashankar KR, Burley SK. Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer. Cell. 108: 71-81. PMID 11792322 DOI: 10.1016/S0092-8674(01)00632-8 |
1 |
|
| 2002 |
Ray S, Bonanno J, Chen H, Wu S, Lencastre HD, Tomasz A, Burley S. Crystal Structure Of A Methanococcus Jannaschii Dna-Binding Protein: Implications For Antibiotic Resistance In Staphyloccoccus Aureus Proteins. 50. DOI: 10.2210/Pdb1Ku9/Pdb |
1 |
|
| 2002 |
Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK. Crystal structure ofSaccharomyces cerevisiaehomologous mitochondrial matrix factor 1 (Hmf1) Acta Crystallographica Section a Foundations of Crystallography. 58: c299-c299. DOI: 10.1107/S0108767302096940 |
1 |
|
| 2002 |
Roll-Mecak A, Cao C, Dever TE, Burley SK. X-ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding Acta Crystallographica Section a Foundations of Crystallography. 58: c5-c5. DOI: 10.1107/S0108767302085288 |
0.01 |
|
| 2001 |
Dever TE, Roll-Mecak A, Choi SK, Lee JH, Cao C, Shin BS, Burley SK. Universal translation initiation factor IF2/eIF5B Cold Spring Harbor Symposia On Quantitative Biology. 66: 417-424. PMID 12762044 DOI: 10.1101/Sqb.2001.66.417 |
1 |
|
| 2001 |
Roll-Mecak A, Shin BS, Dever TE, Burley SK. Engaging the ribosome: Universal IFs of translation Trends in Biochemical Sciences. 26: 705-709. PMID 11738593 DOI: 10.1016/S0968-0004(01)02024-2 |
1 |
|
| 2001 |
Bonanno JB, Edo C, Eswar N, Pieper U, Romanowski MJ, Ilyin V, Gerchman SE, Kycia H, Studier FW, Sali A, Burley SK. Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 98: 12896-901. PMID 11698677 DOI: 10.1073/Pnas.181466998 |
1 |
|
| 2001 |
Gingras AC, Raught B, Gygi SP, Niedzwiecka A, Miron M, Burley SK, Polakiewicz RD, Wyslouch-Cieszynska A, Aebersold R, Sonenberg N. Hierarchical phosphorylation of the translation inhibitor 4E-BP1. Genes & Development. 15: 2852-64. PMID 11691836 DOI: 10.1101/Gad.912401 |
1 |
|
| 2001 |
Olson WK, Bansal M, Burley SK, Dickerson RE, Gerstein M, Harvey SC, Heinemann U, Lu XJ, Neidle S, Shakked Z, Sklenar H, Suzuki M, Tung CS, Westhof E, Wolberger C, et al. A standard reference frame for the description of nucleic acid base-pair geometry. Journal of Molecular Biology. 313: 229-37. PMID 11601858 DOI: 10.1006/Jmbi.2001.4987 |
1 |
|
| 2001 |
Kielkopf CL, Rodionova NA, Green MR, Burley SK. A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell. 106: 595-605. PMID 11551507 DOI: 10.1016/S0092-8674(01)00480-9 |
1 |
|
| 2001 |
Kamada K, Shu F, Chen H, Malik S, Stelzer G, Roeder RG, Meisterernst M, Burley SK. Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex. Cell. 106: 71-81. PMID 11461703 DOI: 10.1016/S0092-8674(01)00417-2 |
1 |
|
| 2001 |
Deo RC, Sonenberg N, Burley SK. X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 98: 4414-9. PMID 11287654 DOI: 10.1073/Pnas.071552198 |
1 |
|
| 2001 |
Houbaviy HB, Burley SK. Thermodynamic analysis of the interaction between YY1 and the AAV P5 promoter initiator element. Chemistry & Biology. 8: 179-87. PMID 11251291 DOI: 10.1016/S1074-5521(00)90066-8 |
1 |
|
| 2001 |
Kamada K, De Angelis J, Roeder RG, Burley SK. Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF Proceedings of the National Academy of Sciences of the United States of America. 98: 3115-3120. PMID 11248041 DOI: 10.1073/Pnas.051631098 |
1 |
|
| 2001 |
Khaleghpour K, Svitkin YV, Craig AW, DeMaria CT, Deo RC, Burley SK, Sonenberg N. Translational repression by a novel partner of human poly(A) binding protein, Paip2. Molecular Cell. 7: 205-16. PMID 11172725 DOI: 10.1016/S1097-2765(01)00168-X |
1 |
|
| 2001 |
Marcotrigiano J, Lomakin IB, Sonenberg N, Pestova TV, Hellen CU, Burley SK. A conserved HEAT domain within eIF4G directs assembly of the translation initiation machinery. Molecular Cell. 7: 193-203. PMID 11172724 DOI: 10.1016/S1097-2765(01)00167-8 |
1 |
|
| 2001 |
Groft CM, Beckmann R, Sali A, Burley SK. Nature Structural Biology. 8: 745-745. DOI: 10.1038/Nsb0901-745 |
1 |
|
| 2000 |
Roll-Mecak A, Cao C, Dever TE, Burley SK. X-ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding Cell. 103: 781-792. PMID 11114334 DOI: 10.1107/S0108767302085288 |
1 |
|
| 2000 |
Burley SK. An overview of structural genomics. Nature Structural Biology. 7: 932-4. PMID 11103991 DOI: 10.1038/80697 |
0.01 |
|
| 2000 |
Groft CM, Beckmann R, Sali A, Burley SK. Crystal structures of ribosome anti-association factor IF6. Nature Structural Biology. 7: 1156-64. PMID 11101899 DOI: 10.1038/82017 |
1 |
|
| 2000 |
Sang Ki Choi, Olsen DS, Roll-Mecak A, Martung A, Remo KL, Burley SK, Hinnebusch AG, Dever TE. Physical and functional interaction between the eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2 Molecular and Cellular Biology. 20: 7183-7191. PMID 10982835 DOI: 10.1128/Mcb.20.19.7183-7191.2000 |
1 |
|
| 2000 |
Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain. Proceedings of the National Academy of Sciences of the United States of America. 97: 5740-5. PMID 10811881 DOI: 10.1073/Pnas.090553997 |
1 |
|
| 2000 |
Nair SK, Burley SK. Recognizing DNA in the library. Nature. 404: 715, 717-8. PMID 10783871 DOI: 10.1038/35008182 |
1 |
|
| 2000 |
Rhodes D, Burley SK. Protein-nucleic acid interactions. Current Opinion in Structural Biology. 10: 75-7. PMID 10766517 DOI: 10.1016/S0959-440X(99)00052-4 |
1 |
|
| 2000 |
Gajiwala KS, Chen H, Cornille F, Roques BP, Reith W, Mach B, Burley SK. Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding. Nature. 403: 916-21. PMID 10706293 DOI: 10.1038/35002634 |
1 |
|
| 2000 |
Gajiwala KS, Burley SK. Winged helix proteins. Current Opinion in Structural Biology. 10: 110-6. PMID 10679470 DOI: 10.1016/S0959-440X(99)00057-3 |
1 |
|
| 2000 |
Lewis HA, Musunuru K, Jensen KB, Edo C, Chen H, Darnell RB, Burley SK. Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome. Cell. 100: 323-32. PMID 10676814 DOI: 10.1016/S0092-8674(00)80668-6 |
1 |
|
| 2000 |
Gajiwala KS, Burley SK. HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. Journal of Molecular Biology. 295: 605-12. PMID 10623550 DOI: 10.1006/Jmbi.1999.3347 |
1 |
|
| 2000 |
Nair SK, Burley SK. Erratum: On the verge of magnetism Nature. 406: 581-581. DOI: 10.1038/35020681 |
1 |
|
| 1999 |
Patikoglou GA, Kim JL, Sun L, Yang SH, Kodadek T, Burley SK. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & Development. 13: 3217-30. PMID 10617571 DOI: 10.1101/Gad.13.24.3217 |
1 |
|
| 1999 |
Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. Structural genomics: beyond the human genome project. Nature Genetics. 23: 151-7. PMID 10508510 DOI: 10.1038/13783 |
1 |
|
| 1999 |
Deo RC, Bonanno JB, Sonenberg N, Burley SK. Recognition of polyadenylate RNA by the poly(A)-binding protein Cell. 98: 835-845. PMID 10499800 DOI: 10.1016/S0092-8674(00)81517-2 |
1 |
|
| 1999 |
Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G. Molecular Cell. 3: 707-16. PMID 10394359 DOI: 10.1016/S1097-2765(01)80003-4 |
1 |
|
| 1999 |
Lewis HA, Chen H, Edo C, Buckanovich RJ, Yang YY, Musunuru K, Zhong R, Darnell RB, Burley SK. Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. Structure (London, England : 1993). 7: 191-203. PMID 10368286 DOI: 10.1016/S0969-2126(99)80025-2 |
1 |
|
| 1999 |
Lee JH, Choi SK, Roll-Mecak A, Burley SK, Dever TE. Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2 Proceedings of the National Academy of Sciences of the United States of America. 96: 4342-4347. PMID 10200264 DOI: 10.1073/Pnas.96.8.4342 |
1 |
|
| 1998 |
Burley SK. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harbor Symposia On Quantitative Biology. 63: 33-40. PMID 10384268 DOI: 10.1101/sqb.1998.63.33 |
0.01 |
|
| 1998 |
Burley SK, Roeder RG. TATA box mimicry by TFIID: Autoinhibition of pol II transcription Cell. 94: 551-553. PMID 9741619 DOI: 10.1016/S0092-8674(00)81596-2 |
1 |
|
| 1998 |
Wolf E, Vassilev A, Makino Y, Sali A, Nakatani Y, Burley SK. Crystal structure of a GCN5-related N-acetyltransferase: Serratia marcescens aminoglycoside 3-N-acetyltransferase. Cell. 94: 439-49. PMID 9727487 DOI: 10.1016/S0092-8674(00)81585-8 |
1 |
|
| 1998 |
Sturm NS, Lin Y, Burley SK, Krstenansky JL, Ahn JM, Azizeh BY, Trivedi D, Hruby VJ. Structure-function studies on positions 17, 18, and 21 replacement analogues of glucagon: the importance of charged residues and salt bridges in glucagon biological activity. Journal of Medicinal Chemistry. 41: 2693-700. PMID 9667960 DOI: 10.1021/Jm980084A |
0.01 |
|
| 1998 |
Párraga A, Bellsolell L, Ferré-D'Amaré AR, Burley SK. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure (London, England : 1993). 6: 661-72. PMID 9634703 DOI: 10.1016/S0969-2126(98)00067-7 |
1 |
|
| 1998 |
Rom E, Kim HC, Gingras AC, Marcotrigiano J, Favre D, Olsen H, Burley SK, Sonenberg N. Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein. The Journal of Biological Chemistry. 273: 13104-9. PMID 9582349 DOI: 10.1074/Jbc.273.21.13104 |
1 |
|
| 1998 |
Sonenberg N, Burley SK, Gingras AC. RNA chiropractics. Nature Structural Biology. 5: 172-4. PMID 9501904 DOI: 10.1038/nsb0398-172 |
1 |
|
| 1998 |
Cirillo LA, McPherson CE, Bossard P, Stevens K, Cherian S, Shim EY, Clark KL, Burley SK, Zaret KS. Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome. The Embo Journal. 17: 244-54. PMID 9427758 DOI: 10.1093/Emboj/17.1.244 |
1 |
|
| 1997 |
Ferré-D'Amaré AR, Burley SK. [10] Dynamic light scattering in evaluating crystallizability of macromolecules. Methods in Enzymology. 276: 157-166. PMID 27799091 DOI: 10.1016/S0076-6879(97)76056-7 |
1 |
|
| 1997 |
Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. X-ray studies of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Nucleic Acids Symposium Series. 8-11. PMID 9478191 |
1 |
|
| 1997 |
Patikoglou G, Burley SK. Eukaryotic transcription factor-DNA complexes Annual Review of Biophysics and Biomolecular Structure. 26: 289-325. PMID 9241421 DOI: 10.1146/Annurev.Biophys.26.1.289 |
1 |
|
| 1997 |
Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell. 89: 951-61. PMID 9200613 DOI: 10.1016/S0092-8674(00)80280-9 |
1 |
|
| 1997 |
Werner MH, Burley SK. Architectural transcription factors: proteins that remodel DNA. Cell. 88: 733-6. PMID 9118214 DOI: 10.1016/S0092-8674(00)81917-0 |
0.04 |
|
| 1997 |
Rhodes D, Burley SK. Protein-nucleic acid interactions. Current Opinion in Structural Biology. 7: 73-5. PMID 9032068 DOI: 10.1016/S0959-440X(97)80009-7 |
1 |
|
| 1997 |
Burley SK, Xie X, Clark KL, Shu F. Histone-like transcription factors in eukaryotes. Current Opinion in Structural Biology. 7: 94-102. PMID 9032065 DOI: 10.1016/S0959-440X(97)80012-7 |
1 |
|
| 1997 |
Nikolov DB, Burley SK. RNA polymerase II transcription initiation: A structural view Proceedings of the National Academy of Sciences of the United States of America. 94: 15-22. PMID 8990153 DOI: 10.1073/Pnas.94.1.15 |
1 |
|
| 1996 |
Houbaviy HB, Usheva A, Shenk T, Burley SK. Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator Proceedings of the National Academy of Sciences of the United States of America. 93: 13577-13582. PMID 8942976 DOI: 10.1073/Pnas.93.24.13577 |
1 |
|
| 1996 |
Bryant GO, Martel LS, Burley SK, Berk AJ. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes & Development. 10: 2491-504. PMID 8843200 DOI: 10.1101/Gad.10.19.2491 |
1 |
|
| 1996 |
Burley SK, Roeder RG. Biochemistry and structural biology of transcription factor IID (TFIID) Annual Review of Biochemistry. 65: 769-799. PMID 8811195 DOI: 10.1146/Annurev.Bi.65.070196.004005 |
1 |
|
| 1996 |
Burley SK. X-ray crystallographic studies of eukaryotic transcription initiation factors. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 351: 483-9. PMID 8735270 DOI: 10.1098/Rstb.1996.0046 |
0.01 |
|
| 1996 |
Burley SK. The TATA box binding protein. Current Opinion in Structural Biology. 6: 69-75. PMID 8696975 DOI: 10.1016/S0959-440X(96)80097-2 |
0.01 |
|
| 1996 |
Nikolov DB, Chen H, Halay ED, Hoffman A, Roeder RG, Burley SK. Crystal structure of a human TATA box-binding protein/TATA element complex. Proceedings of the National Academy of Sciences of the United States of America. 93: 4862-7. PMID 8643494 DOI: 10.1073/Pnas.93.10.4862 |
1 |
|
| 1996 |
Burley SK. Picking up the TAB. Nature. 381: 112-3. PMID 8610004 DOI: 10.1038/381112A0 |
0.01 |
|
| 1996 |
Hoffmann A, Chiang CM, Oelgeschläger T, Xie X, Burley SK, Nakatani Y, Roeder RG. A histone octamer-like structure within TFIID. Nature. 380: 356-9. PMID 8598932 DOI: 10.1038/380356A0 |
1 |
|
| 1996 |
Xie X, Kokubo T, Cohen SL, Mirza UA, Hoffmann A, Chait BT, Roeder RG, Nakatani Y, Burley SK. Structural similarity between TAFs and the heterotetrameric core of the histone octamer. Nature. 380: 316-22. PMID 8598927 DOI: 10.1038/380316A0 |
1 |
|
| 1996 |
Burley SK. DNA recognition by protein complexes during eukaryotic transcription initiation Acta Crystallographica Section a Foundations of Crystallography. 52: C175-C175. DOI: 10.1107/S010876739609229X |
0.01 |
|
| 1996 |
Steingrímsson E, Nii A, Fisher DE, Ferré-D'Amaré AR, McCormick RJ, Russell LB, Burley SK, Ward JM, Jenkins NA, Copeland NG. The semidominant Mi(b) mutation identifies a role for the HLH domain in DNA binding in addition to its role in protein dimerization. The Embo Journal. 15: 6280-6289. DOI: 10.1002/J.1460-2075.1996.Tb01018.X |
1 |
|
| 1995 |
Burley SK. Rel revealed: cocrystal structures of the NF-kappa B p50 homodimer. Chemistry & Biology. 2: 77-81. PMID 9383407 DOI: 10.1016/1074-5521(95)90279-1 |
0.01 |
|
| 1995 |
Kim JL, Burley SK. PCD/DCoH: more than a second molecular saddle. Structure (London, England : 1993). 3: 531-4. PMID 8590013 DOI: 10.1016/S0969-2126(01)00186-1 |
1 |
|
| 1995 |
Steingrímsson E, Moore KJ, Lamoreux ML, Ferré-D'Amaré AR, Burley SK, Zimring DC, Skow LC, Hodgkinson CA, Arnheiter H, Copeland NG. Molecular basis of mouse microphthalmia (mi) mutations helps explain their developmental and phenotypic consequences. Nature Genetics. 8: 256-63. PMID 7874168 DOI: 10.1038/Ng1194-256 |
1 |
|
| 1995 |
Nikolov DB, Chen H, Halay ED, Usheva AA, Hisatake K, Lee DK, Roeder RG, Burley SK. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature. 377: 119-28. PMID 7675079 DOI: 10.1038/377119A0 |
1 |
|
| 1995 |
Burley SK. Plus ça change, plus c'est la même chose. Nature Structural Biology. 1: 207-8. PMID 7656043 DOI: 10.1038/Nsb0494-207 |
0.01 |
|
| 1995 |
Burley SK. Forward to the fundamentals. Nature Structural Biology. 1: 8-10. PMID 7656011 DOI: 10.1038/Nsb0194-8 |
0.01 |
|
| 1995 |
Sha M, Ferre-D'Amare AR, Burley SK, Goss DJ. Anti-cooperative biphasic equilibrium binding of transcription factor upstream stimulatory factor to its cognate DNA monitored by protein fluorescence changes Journal of Biological Chemistry. 270: 19325-19329. PMID 7642609 DOI: 10.1074/Jbc.270.33.19325 |
1 |
|
| 1995 |
Halaas JL, Gajiwala KS, Maffei M, Cohen SL, Chait BT, Rabinowitz D, Lallone RL, Burley SK, Friedman JM. Weight-reducing effects of the plasma protein encoded by the obese gene. Science (New York, N.Y.). 269: 543-6. PMID 7624777 DOI: 10.1126/Science.7624777 |
1 |
|
| 1995 |
Cohen SL, Ferré-D'Amaré AR, Burley SK, Chait BT. Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry. Protein Science : a Publication of the Protein Society. 4: 1088-99. PMID 7549873 DOI: 10.1002/Pro.5560040607 |
1 |
|
| 1995 |
Canne LE, Ferre- D'Amare AR, Burley SK, Kent SBH. Total Chemical Synthesis of a Unique Transcription Factor-Related Protein: cMyc-Max Journal of the American Chemical Society. 117: 2998-3007. DOI: 10.1021/Ja00116A005 |
0.01 |
|
| 1994 |
Ferré-D'Amaré AR, Pognonec P, Roeder RG, Burley SK. Structure and function of the b/HLH/Z domain of USF. The Embo Journal. 13: 180-9. PMID 8306960 DOI: 10.2210/Pdb1An4/Pdb |
1 |
|
| 1994 |
Ferré-D'Amaré AR, Burley SK. Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies. Structure (London, England : 1993). 2: 357-9. PMID 8081751 DOI: 10.1016/S0969-2126(00)00037-X |
1 |
|
| 1994 |
Burley SK. p53: a cellular Achilles' heel revealed. Structure (London, England : 1993). 2: 789-92. PMID 7812712 DOI: 10.1016/S0969-2126(94)00079-4 |
0.01 |
|
| 1994 |
Kim JL, Burley SK. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature Structural Biology. 1: 638-53. PMID 7634103 DOI: 10.1038/Nsb0994-638 |
1 |
|
| 1994 |
Nikolov DB, Burley SK. 2.1 Å resolution refined structure of a tata box-binding protein (TBP) Nature Structural Biology. 1: 621-637. PMID 7634102 DOI: 10.1038/Nsb0994-621 |
1 |
|
| 1994 |
Burley SK. DNA-binding motifs from eukaryotic transcription factors Current Opinion in Structural Biology. 4: 3-11. DOI: 10.1016/S0959-440X(94)90053-1 |
0.01 |
|
| 1993 |
Ferré-D'Amaré AR, Prendergast GC, Ziff EB, Burley SK. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature. 363: 38-45. PMID 8479534 DOI: 10.1038/363038A0 |
1 |
|
| 1993 |
Kim H, Burley SK, Lipscomb WN. Re-refinement of the X-ray crystal structure of bovine lens leucine aminopeptidase complexed with bestatin. Journal of Molecular Biology. 230: 722-4. PMID 8478928 DOI: 10.1006/Jmbi.1993.1193 |
1 |
|
| 1993 |
Kim JL, Nikolov DB, Burley SK. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365: 520-7. PMID 8413605 DOI: 10.1038/365520A0 |
1 |
|
| 1993 |
Clark KL, Halay ED, Lai E, Burley SK. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5 Nature. 364: 412-420. PMID 8332212 DOI: 10.1038/364412A0 |
1 |
|
| 1993 |
Lai E, Clark KL, Burley SK, Darnell JE. Hepatocyte nuclear factor 3/fork head or "winged helix" proteins: a family of transcription factors of diverse biologic function. Proceedings of the National Academy of Sciences of the United States of America. 90: 10421-3. PMID 8248124 DOI: 10.1073/Pnas.90.22.10421 |
1 |
|
| 1993 |
Burley SK, Clark KL, Ferré-D'Amaré A, Kim JL, Nikolov DB. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harbor Symposia On Quantitative Biology. 58: 123-32. PMID 7956022 DOI: 10.1101/Sqb.1993.058.01.016 |
1 |
|
| 1992 |
Burley SK, David PR, Sweet RM, Taylor A, Lipscomb WN. Structure determination and refinement of bovine lens leucine aminopeptidase and its complex with bestatin. Journal of Molecular Biology. 224: 113-40. PMID 1548695 DOI: 10.1016/0022-2836(92)90580-D |
1 |
|
| 1992 |
Nikolov DB, Hu SH, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua NH, Roeder RG, Burley SK. Crystal structure of TFIID TATA-box binding protein. Nature. 360: 40-6. PMID 1436073 DOI: 10.1038/360040A0 |
1 |
|
| 1992 |
Kuriyan J, Burley SK. DNA recognition, warts and all Nature. 359: 476. DOI: 10.1038/359476A0 |
1 |
|
| 1991 |
Kuriyan J, Osapay K, Burley SK, Brünger AT, Hendrickson WA, Karplus M. Exploration of disorder in protein structures by X-ray restrained molecular dynamics. Proteins. 10: 340-58. PMID 1946343 DOI: 10.1002/Prot.340100407 |
1 |
|
| 1991 |
Burley SK, David PR, Lipscomb WN. Leucine aminopeptidase: bestatin inhibition and a model for enzyme-catalyzed peptide hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 88: 6916-20. PMID 1871107 DOI: 10.1073/Pnas.88.16.6916 |
1 |
|
| 1991 |
David PR, Burley SK. Method for equilibrating protein crystals with heavy-atom reagents Journal of Applied Crystallography. 24: 1073-1074. DOI: 10.1107/S002188989100660X |
1 |
|
| 1990 |
Burley SK, David PR, Taylor A, Lipscomb WN. Molecular structure of leucine aminopeptidase at 2.7-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 87: 6878-82. PMID 2395881 DOI: 10.1073/Pnas.87.17.6878 |
1 |
|
| 1989 |
Shoham G, Burley SK, Lipscomb WN. Structure of cyclo(-L-prolylglycyl-)2 trihydrate. Acta Crystallographica. Section C, Crystal Structure Communications. 45: 1944-8. PMID 2635609 DOI: 10.1107/S0108270189004257 |
1 |
|
| 1989 |
BURLEY S. Electrostatic interactions in aromatic oligopeptides contribute to protein stability Trends in Biotechnology. 7: 354-359. DOI: 10.1016/0167-7799(89)90036-X |
0.01 |
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| 1988 |
Burley SK, Petsko GA. Weakly polar interactions in proteins. Advances in Protein Chemistry. 39: 125-89. PMID 3072867 DOI: 10.1016/S0065-3233(08)60376-9 |
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| 1987 |
Burley SK, Wang AH, Votano JR, Rich A. Antigelling and antisickling bisphenyl oligopeptides and peptide analogues have similar structural features. Biochemistry. 26: 5091-9. PMID 3663644 DOI: 10.1021/Bi00390A030 |
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| 1987 |
Burley SK, Wang AHJ. Structure of an antisickling agent, N-phenylacetyl-L-phenylalanine Acta Crystallographica Section C Crystal Structure Communications. 43: 797-799. DOI: 10.1107/S0108270187094046 |
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| 1987 |
Burley SK, Wang AHJ. Structure of N-benzoyl-5'-O-tert-butyldimethylsilyl-2'-deoxyadenosine monohydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 988-990. DOI: 10.1107/S0108270187093326 |
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| 1987 |
Fujii S, Burley SK, Wang AHJ. Structure of an antigelling agent, L-phenylalanyl-glycyl-glycyl-D-phenylalanine trihydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 1008-1009. DOI: 10.1107/S0108270187093211 |
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| 1987 |
Burley SK, Wang AHJ. Structure of an antisickling agent, L-phenylalanyl-3-aminopyridinium dichloride monohydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 1010-1011. DOI: 10.1107/S010827018709320X |
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| 1987 |
Wang AHJ, Burley SK. The structure of an antisickling agent, L-phenylalanine benzyl ester monochloride Acta Crystallographica Section C Crystal Structure Communications. 43: 1011-1012. DOI: 10.1107/S0108270187093193 |
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| 1987 |
Burley SK. The structure of an antisickling agent, N-phenylacetyl-L-phenylalanine monohydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 1316-1318. DOI: 10.1107/S0108270187092035 |
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| 1987 |
Wang AHJ, Burley SK. The structure of an antigelling agent, L-lysyl-L-phenylalanyl-L-phenylalanine dibromide Acta Crystallographica Section C Crystal Structure Communications. 43: 1635-1636. DOI: 10.1107/S0108270187090784 |
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| 1987 |
BURLEY SK, PETSKO GA. ChemInform Abstract: Dimerization Energetics of Benzene and Aromatic Amino Acid Side Chains. Cheminform. 18. DOI: 10.1002/chin.198717064 |
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| 1986 |
Burley SK, Petsko GA. Amino-aromatic interactions in proteins. Febs Letters. 203: 139-43. PMID 3089835 DOI: 10.1016/0014-5793(86)80730-X |
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| 1986 |
Burley SK, Petsko GA. Dimerization energetics of benzene and aromatic amino acid side chains Journal of the American Chemical Society. 108: 7995-8001. DOI: 10.1021/Ja00285A019 |
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| 1985 |
Burley SK, Petsko GA. Aromatic-aromatic interaction: a mechanism of protein structure stabilization. Science (New York, N.Y.). 229: 23-8. PMID 3892686 DOI: 10.1126/Science.3892686 |
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| 1985 |
Nave C, Helliwell JR, Moore PR, Thompson AW, Worgan JS, Greenall RJ, Miller A, Burley SK, Bradshaw J, Pigram WJ, Fuller W, Siddons DP, Deutsch M, Tragear RT. Facilities for solution scattering and fibre diffraction at the Daresbury SRS Journal of Applied Crystallography. 18: 396-403. DOI: 10.1107/S0021889885010615 |
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| 1984 |
Burley SK, Petsko GA, Ringe D. Effects of X-irradiation of single crystals of ribonuclease A Acta Crystallographica Section a Foundations of Crystallography. 40: C41-C41. DOI: 10.1107/S0108767384098548 |
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| 1983 |
Burley SK, Murray RGE. Structure of the regular surface layer of Bacillus polymyxa Canadian Journal of Microbiology. 29: 775-780. DOI: 10.1139/M83-126 |
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| 1982 |
Burley SK, Miller A, Harrap KA, Kelly DC. Structure of the Baculovirus nucleocapsid. Virology. 120: 433-40. PMID 18638731 DOI: 10.1016/0042-6822(82)90043-5 |
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| 1982 |
Erickson JW, Tollin P, Richardson JF, Burley SK, Bancroft JB. The structure of an unusual ordered aggregate of papaya mosaic virus protein. Virology. 118: 241-5. PMID 18635132 DOI: 10.1016/0042-6822(82)90339-7 |
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| 1982 |
Baumel RT, Burley SK, Freeman DF, Gammel JL, Nuttall J. The rise of a cylindrical bubble in an inviscid liquid Canadian Journal of Physics. 60: 999-1007. DOI: 10.1139/p82-138 |
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| 1982 |
Fraser PA, Burley SK. A simple model of a Feshbach resonance European Journal of Physics. 3: 230-238. DOI: 10.1088/0143-0807/3/4/007 |
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| 1981 |
Burley SK, John SO, Nuttall J. Vector Orthogonal Polynomials Siam Journal On Numerical Analysis. 18: 919-924. DOI: 10.1137/0718065 |
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