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Stephen K. Burley, M.D., D.Phil. - Publications

Affiliations: 
2002 Rockefeller University, New York, NY, United States 
 2012- Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
General Biophysics, Molecular Biology
Website:
http://public.proteomics.rutgers.edu/node/9

357 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Goodsell DS, Burley SK. RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens. Structure (London, England : 1993). PMID 34739839 DOI: 10.1016/j.str.2021.10.008  1
2021 Zardecki C, Burley SK. John D. Westbrook Jr (1957-2021). Acta Crystallographica. Section D, Structural Biology. 77: 1475-1476. PMID 34726174 DOI: 10.1107/S2059798321011402  1
2021 Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Goodsell DS, Ghosh S, Kramer Green R, et al. RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. Protein Science : a Publication of the Protein Society. PMID 34676613 DOI: 10.1002/pro.4213  1
2021 Markosian C, Staquicini DI, Dogra P, Dodero-Rojas E, Tang FHF, Smith TL, Contessoto VG, Libutti SK, Wang Z, Cristini V, Whitford PC, Burley SK, Onuchic JN, Pasqualini R, Arap W. Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools. Biorxiv : the Preprint Server For Biology. PMID 34676381 DOI: 10.1101/2021.08.30.458222  1
2021 Zardecki C, Dutta S, Goodsell DS, Lowe R, Voigt M, Burley SK. PDB-101: Educational Resources Supporting Molecular Explorations Through Biology and Medicine. Protein Science : a Publication of the Protein Society. PMID 34601771 DOI: 10.1002/pro.4200  1
2021 Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, ... ... Burley SK, et al. Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic. Proteins. PMID 34580920 DOI: 10.1002/prot.26250  1
2021 Zhang S, Zhou YF, Cao J, Burley SK, Wang HY, Zheng XFS. mTORC1 Promotes ARID1A Degradation and Oncogenic Chromatin Remodeling in Hepatocellular Carcinoma. Cancer Research. PMID 34429326 DOI: 10.1158/0008-5472.CAN-21-0206  1
2021 Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, ... ... Burley SK, et al. Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34234013 DOI: 10.1073/pnas.2105739118  1
2021 Staquicini FI, Hajitou A, Driessen WH, Proneth B, Cardó-Vila M, Staquicini DI, Markosian C, Hoh M, Cortez M, Hooda-Nehra A, Jaloudi M, Silva IT, Buttura J, Nunes D, Dias-Neto E, ... ... Burley S, et al. Targeting a cell surface vitamin D receptor on tumor-associated macrophages in triple-negative breast cancer. Elife. 10. PMID 34060472 DOI: 10.7554/eLife.65145  1
2021 Burley SK, Berman HM. Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction. Structure (London, England : 1993). 29: 515-520. PMID 33984281 DOI: 10.1016/j.str.2021.04.010  1
2021 Shao C, Feng Z, Westbrook JD, Peisach E, Berrisford J, Ikegawa Y, Kurisu G, Velankar S, Burley SK, Young JY. Modernized Uniform Representation of Carbohydrate Molecules in theProtein Data Bank. Glycobiology. PMID 33978738 DOI: 10.1093/glycob/cwab039  1
2021 Sehnal D, Bittrich S, Deshpande M, Svobodová R, Berka K, Bazgier V, Velankar S, Burley SK, Koča J, Rose AS. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Research. PMID 33956157 DOI: 10.1093/nar/gkab314  1
2021 Velankar S, Burley SK, Kurisu G, Hoch JC, Markley JL. The Protein Data Bank Archive. Methods in Molecular Biology (Clifton, N.J.). 2305: 3-21. PMID 33950382 DOI: 10.1007/978-1-0716-1406-8_1  1
2021 Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, ... ... Burley SK, et al. Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain. Biorxiv : the Preprint Server For Biology. PMID 33758865 DOI: 10.1101/2021.03.15.435496  1
2021 Burley SK. Impact of structural biologists and the Protein Data Bank on small-molecule drug discovery and development. The Journal of Biological Chemistry. 100559. PMID 33744282 DOI: 10.1016/j.jbc.2021.100559  0.01
2021 Feng Z, Westbrook JD, Sala R, Smart OS, Bricogne G, Matsubara M, Yamada I, Tsuchiya S, Aoki-Kinoshita KF, Hoch JC, Kurisu G, Velankar S, Burley SK, Young JY. Enhanced validation of small-molecule ligands and carbohydrates in the protein databank. Structure (London, England : 1993). PMID 33657417 DOI: 10.1016/j.str.2021.02.004  1
2021 Zhang H, Spencer K, Burley SK, Zheng XFS. Toward improving androgen receptor-targeted therapies in male-dominant hepatocellular carcinoma. Drug Discovery Today. PMID 33561464 DOI: 10.1016/j.drudis.2021.02.001  1
2021 Sehnal D, Svobodová R, Berka K, Rose AS, Burley SK, Velankar S, Koča J. High-performance macromolecular data delivery and visualization for the web. Corrigendum. Acta Crystallographica. Section D, Structural Biology. 77: 126. PMID 33404533 DOI: 10.1107/S205979832001606X  1
2020 Segura J, Rose Y, Westbrook J, Burley SK, Duarte JM. RCSB Protein Data Bank 1D Tools and Services. Bioinformatics (Oxford, England). PMID 33313665 DOI: 10.1093/bioinformatics/btaa1012  1
2020 Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, ... ... Burley SK, et al. Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic. Biorxiv : the Preprint Server For Biology. PMID 33299989 DOI: 10.1101/2020.12.01.406637  1
2020 Bittrich S, Burley SK, Rose AS. Real-time structural motif searching in proteins using an inverted index strategy. Plos Computational Biology. 16: e1008502. PMID 33284792 DOI: 10.1371/journal.pcbi.1008502  1
2020 Sehnal D, Svobodová R, Berka K, Rose AS, Burley SK, Velankar S, Koča J. High-performance macromolecular data delivery and visualization for the web. Acta Crystallographica. Section D, Structural Biology. 76: 1167-1173. PMID 33263322 DOI: 10.1107/S2059798320014515  1
2020 Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, et al. RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Research. PMID 33211854 DOI: 10.1093/nar/gkaa1038  1
2020 Stebbing J, Sánchez Nievas G, Falcone M, Youhanna S, Richardson P, Ottaviani S, Shen JX, Sommerauer C, Tiseo G, Ghiadoni L, Virdis A, Monzani F, Rizos LR, Forfori F, Avendaño-Céspedes A, ... ... Burley SK, et al. JAK inhibition reduces SARS-CoV-2 liver infectivity and modulates inflammatory responses to reduce morbidity and mortality. Science Advances. PMID 33187978 DOI: 10.1126/sciadv.abe4724  1
2020 Rose Y, Duarte JM, Lowe R, Segura J, Bi C, Bhikadiya C, Chen L, Rose AS, Bittrich S, Burley SK, Westbrook JD. RCSB Protein Data Bank: Architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive. Journal of Molecular Biology. PMID 33186584 DOI: 10.1016/j.jmb.2020.11.003  1
2020 Sehnal D, Bittrich S, Velankar S, Koča J, Svobodová R, Burley SK, Rose AS. BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. Plos Computational Biology. 16: e1008247. PMID 33075050 DOI: 10.1371/journal.pcbi.1008247  1
2020 Goodsell DS, Burley SK. RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study. Oncogene. PMID 32939013 DOI: 10.1038/S41388-020-01461-2  1
2020 Burley SK, Bromberg Y, Craig P, Duffy S, Dutta S, Hall BL, Hudson BP, Jiang J, D Khare S, Koeppe JR, Lubin JH, Mills SA, Pikaart MJ, Roberts R, Sarma V, et al. Virtual Boot Camp: COVID-19 evolution and structural biology. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 32797732 DOI: 10.1002/Bmb.21428  1
2020 Goodsell DS, Voigt M, Zardecki C, Burley SK. Integrative illustration for coronavirus outreach. Plos Biology. 18: e3000815. PMID 32760062 DOI: 10.1371/Journal.Pbio.3000815  1
2020 Guzenko D, Burley SK, Duarte JM. Real time structural search of the Protein Data Bank. Plos Computational Biology. 16: e1007970. PMID 32639954 DOI: 10.1371/Journal.Pcbi.1007970  1
2020 Goodsell DS, Zardecki C, Berman HM, Burley SK. Insights from 20 years of the Molecule of the Month. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 32558264 DOI: 10.1002/Bmb.21360  1
2020 Burley SK. How to help the free market fight coronavirus. Nature. PMID 32210376 DOI: 10.1038/D41586-020-00888-7  0.01
2020 Westbrook JD, Soskind R, Hudson BP, Burley SK. Impact of the Protein Data Bank on antineoplastic approvals. Drug Discovery Today. PMID 32068073 DOI: 10.1016/J.Drudis.2020.02.002  1
2020 Parks CD, Gaieb Z, Chiu M, Yang H, Shao C, Walters WP, Jansen JM, McGaughey G, Lewis RA, Bembenek SD, Ameriks MK, Mirzadegan T, Burley SK, Amaro RE, Gilson MK. D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. Journal of Computer-Aided Molecular Design. PMID 31974851 DOI: 10.1007/S10822-020-00289-Y  1
2020 Feng Z, Verdiguel N, Costanzo LD, Goodsell DS, Westbrook JD, Burley SK, Zardecki C. Impact of the Protein Data Bank Across Scientific Disciplines Data Science Journal. 19: 25. DOI: 10.5334/Dsj-2020-025  1
2020 Zardecki C, Shao C, Feng Z, Westbrook JD, Persikova I, Burley SK, Young JY. Collaborating With Glycoscience Community To Improve Data Representation of Carbohydrates in the Protein Data Bank The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.03289  1
2020 Zardecki C, Berman HM, Burley SK, Goodsell DS. Insights from 20 Years of the Molecule of the Month and PDB‐101 The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.02238  1
2019 Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, et al. Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure (London, England : 1993). PMID 31780431 DOI: 10.1016/J.Str.2019.11.002  1
2019 Goodsell DS, Zardecki C, Di Costanzo L, Duarte JM, Hudson BP, Persikova I, Segura J, Shao C, Voigt M, Westbrook JD, Young JY, Burley SK. RCSB Protein Data Bank: Enabling biomedical research and drug discovery. Protein Science : a Publication of the Protein Society. PMID 31531901 DOI: 10.1002/Pro.3730  1
2019 Wagner JR, Churas CP, Liu S, Swift RV, Chiu M, Shao C, Feher VA, Burley SK, Gilson MK, Amaro RE. Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking. Structure (London, England : 1993). PMID 31257108 DOI: 10.1016/J.Str.2019.05.012  1
2019 Castellano GM, Aisner J, Burley SK, Vallat B, Yu HA, Pine SR, Ganesan S. A Novel Acquired Exon 20 EGFR M766Q Mutation in Lung Adenocarcinoma Mediates Osimertinib Resistance but is Sensitive to Neratinib and Poziotinib: a Brief Report. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. PMID 31254668 DOI: 10.1016/J.Jtho.2019.06.015  0.01
2019 Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, et al. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Crystallographica. Section D, Structural Biology. 75: 451-454. PMID 30988261 DOI: 10.1107/S2059798319004522  1
2019 Lafita A, Bliven S, Prlić A, Guzenko D, Rose PW, Bradley A, Pavan P, Myers-Turnbull D, Valasatava Y, Heuer M, Larson M, Burley SK, Duarte JM. BioJava 5: A community driven open-source bioinformatics library. Plos Computational Biology. 15: e1006791. PMID 30735498 DOI: 10.1371/Journal.Pcbi.1006791  1
2019 Gaieb Z, Parks CD, Chiu M, Yang H, Shao C, Walters WP, Lambert MH, Nevins N, Bembenek SD, Ameriks MK, Mirzadegan T, Burley SK, Amaro RE, Gilson MK. D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings. Journal of Computer-Aided Molecular Design. PMID 30632055 DOI: 10.1007/S10822-018-0180-4  1
2019 Young JY, Shao C, Feng Z, Westbrook J, Peisach E, Persikova I, Burley SK. Enabling findability, accessibility, interoperability, and reusability with improved data representation of carbohydrates in the Protein Data Bank F1000research. 8. DOI: 10.7490/F1000Research.1116506.1  1
2019 Young J, Westbrook J, Burley SK, team RP. Creating and maintaining a data archive for 3D structures of biological macromolecules F1000research. 8. DOI: 10.7490/F1000Research.1111762.1  1
2019 Zardecki C, Young J, Westbrook J, Feng Z, Peisach E, Persikova I, Liang Y, Gutmanas A, Berrisford J, Ikegawa Y, Chen M, Burley SK, Valenkar S, Kurisu G. Enabling depositor-initiated PDB coordinate replacement through file versioning Acta Crystallographica Section a Foundations and Advances. 75: a25-a25. DOI: 10.1107/S0108767319099744  0.01
2019 Zardecki C, Bhikadiya C, Dutta S, Goodsell DS, Lowe R, Randle C, Tao W, Voigt M, Burley SK. Exploring biology and medicine using 3D biomacromolecules with PDB-101 Acta Crystallographica Section A. 75. DOI: 10.1107/S0108767319099732  1
2018 Burley SK. Integrative/Hybrid Methods Structural Biology: Role of Macromolecular Crystallography. Advances in Experimental Medicine and Biology. 1105: 11-18. PMID 30617820 DOI: 10.1007/978-981-13-2200-6_2  0.01
2018 Westbrook JD, Burley SK. How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals. Structure (London, England : 1993). PMID 30595456 DOI: 10.1107/S0108767319099902  1
2018 Shao C, Liu Z, Yang H, Wang S, Burley SK. Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach. Scientific Data. 5: 180293. PMID 30532050 DOI: 10.1038/Sdata.2018.293  1
2018 Di Costanzo L, Dutta S, Burley SK. Amino acid modifications for conformationally constraining naturally occurring and engineered peptide backbones: Insights from the Protein Data Bank. Biopolymers. e23230. PMID 30368772 DOI: 10.1002/Bip.23230  1
2018 Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, et al. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Research. PMID 30357411 DOI: 10.1093/Nar/Gky1004  1
2018 . Protein Data Bank: the single global archive for 3D macromolecular structure data. Nucleic Acids Research. PMID 30357364 DOI: 10.1093/Nar/Gky949  0.01
2018 Markosian C, Di Costanzo L, Sekharan M, Shao C, Burley SK, Zardecki C. Analysis of impact metrics for the Protein Data Bank. Scientific Data. 5: 180212. PMID 30325351 DOI: 10.1038/Sdata.2018.212  1
2018 Korkmaz S, Duarte JM, Prlić A, Goksuluk D, Zararsiz G, Saracbasi O, Burley SK, Rose PW. Investigation of protein quaternary structure via stoichiometry and symmetry ınformation. Plos One. 13: e0197176. PMID 29864163 DOI: 10.1371/Journal.Pone.0197176  1
2018 Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley SK, Romo D, Almo SC, et al. Comparison of Alicyclobacillus acidocaldarius OSBS to its promiscuous NSAR/OSBS relatives. Biochemistry. PMID 29767960 DOI: 10.1021/Acs.Biochem.8B00088  1
2018 Tsang CK, Chen M, Cheng X, Qi Y, Chen Y, Das I, Li X, Vallat B, Fu LW, Qian CN, Wang HY, White E, Burley SK, Zheng XFS. SOD1 Phosphorylation by mTORC1 Couples Nutrient Sensing and Redox Regulation. Molecular Cell. 70: 502-515.e8. PMID 29727620 DOI: 10.1016/J.Molcel.2018.03.029  1
2018 Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, ... ... Burley SK, et al. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database : the Journal of Biological Databases and Curation. 2018. PMID 29688351 DOI: 10.1093/Database/Bay002  1
2018 Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlić A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, ... ... Burley SK, et al. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature Biotechnology. PMID 29457794 DOI: 10.1038/Nbt.4072  1
2018 Lawson CL, Gabanyi MJ, Westbrook J, Young J, Dutta S, Peisach E, Hudson BP, Rose P, Duarte J, Sarjeant A, Burley SK, Berman HM. New online curriculum: the PDB pipeline and data archiving Acta Crystallographica Section a Foundations and Advances. 74: a243-a243. DOI: 10.1107/S0108767318097568  0.01
2018 Burley SK. Ligand validation for the Protein Data Bank Acta Crystallographica Section A. 74. DOI: 10.1107/S0108767318096770  0.01
2018 Guzenko D, Duarte JM, Burley SK. Volume-ensemble search models for molecular replacement Acta Crystallographica Section A. 74. DOI: 10.1107/S0108767318096459  1
2018 Rose AS, Burley SK. Interactive Exploration of Non-Covalent Interactions with the NGL Viewer Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1914  1
2018 Rose AS, Sehnal D, Bliven S, Burley SK, Velankar S. Molql: Towards a Common General Purpose Molecular Query Language Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1910  1
2017 Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, et al. Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Medicine. 9: 113. PMID 29254494 DOI: 10.1186/S13073-017-0509-Y  1
2017 Gaieb Z, Liu S, Gathiaka S, Chiu M, Yang H, Shao C, Feher VA, Walters WP, Kuhn B, Rudolph MG, Burley SK, Gilson MK, Amaro RE. D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. Journal of Computer-Aided Molecular Design. PMID 29204945 DOI: 10.1007/S10822-017-0088-4  1
2017 Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, ... ... Burley SK, et al. Validation of Structures in the Protein Data Bank. Structure (London, England : 1993). 25: 1916-1927. PMID 29174494 DOI: 10.1016/J.Str.2017.10.009  1
2017 Burley SK, Berman HM, Christie C, Duarte J, Feng Z, Westbrook J, Young J, Zardecki C. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Science : a Publication of the Protein Society. PMID 29067736 DOI: 10.1107/S0108767318098811  1
2017 Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J. PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. Structure (London, England : 1993). 25: 1317-1318. PMID 28877501 DOI: 10.1016/J.Str.2017.08.001  1
2017 Burley SK, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. Methods in Molecular Biology (Clifton, N.J.). 1607: 627-641. PMID 28573592 DOI: 10.1007/978-1-4939-7000-1_26  1
2017 Hegde RP, Fedorov AA, Sauder JM, Burley SK, Almo SC, Ramagopal UA. The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets. Acta Crystallographica. Section F, Structural Biology Communications. 73: 184-195. PMID 28368276 DOI: 10.1107/S2053230X17002680  1
2017 Bhattacharya R, Rose PW, Burley SK, Prlić A. Impact of genetic variation on three dimensional structure and function of proteins. Plos One. 12: e0171355. PMID 28296894 DOI: 10.1371/Journal.Pone.0171355  1
2017 Shao C, Yang H, Westbrook JD, Young JY, Zardecki C, Burley SK. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive. Structure (London, England : 1993). PMID 28216043 DOI: 10.1107/S0108767317098142  1
2017 Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, ... ... Burley SK, et al. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure (London, England : 1993). PMID 28190782 DOI: 10.1016/J.Str.2017.01.004  1
2017 Duarte JM, Bliven S, Lafita A, Capitani G, Burley S. Automated evaluation of quaternary structures from protein crystals F1000research. 6. DOI: 10.7490/F1000Research.1114722.1  1
2017 Rose AS, Burley SK. NGL – a molecular graphics library for the web F1000research. 6. DOI: 10.7490/F1000Research.1114664.1  1
2017 Young JY, Berrisford JM, Igarashi R, Team wB, Team wO, Markley J, Nakamura H, Velankar S, Burley SK. Biocuration of experimentally-determined 3D macromolecular structures and their complexes at the wwPDB F1000research. 6. DOI: 10.7490/F1000Research.1113934.1  1
2017 Kurisu G, Burley SK, Markley JL, Nakamura H, Velankar S. Small-molecule ligand/drug representation and validation in the Protein Data Bank Acta Crystallographica Section a Foundations and Advances. 73: C45-C45. DOI: 10.1107/S2053273317095250  1
2017 Gutmanas A, Markley JL, Nakamura H, Burley SK, Velankar S. OneDep: wwPDB system for deposition, biocuration, validation of macromolecular structures Acta Crystallographica Section a Foundations and Advances. 73: C293-C293. DOI: 10.1107/S2053273317092804  1
2017 Zardecki C, Christie C, Dutta S, Goodsell DS, Lowe R, Randle C, Tao W, Voigt M, Woo J, Burley SK. PDB-101: educational portal for molecular explorations through biology and medicine Acta Crystallographica Section a Foundations and Advances. 73: C670-C670. DOI: 10.1107/S2053273317089033  0.01
2017 Zardecki C, Burley SK, Christie C, Duarte J, Feng Z, Prlic A, Rose A, Westbrook JD, Young J. RCSB PDB: structural biology views for basic and applied research Acta Crystallographica Section A. 73. DOI: 10.1107/S2053273317083978  1
2017 Burley SK, Gabanyi MJ, Sala R, Westbrook JD, Flippen-Anderson JL, Deshmukh I, Berman HM. BioSync: an online resource for X-ray facilities worldwide Acta Crystallographica Section a Foundations and Advances. 73: C1216-C1216. DOI: 10.1107/S2053273317083589  0.01
2017 Westbrook J, Markley J, Nakamura H, Velankar S, Burley S. wwPDB OneDep validation services Acta Crystallographica Section a Foundations and Advances. 73: C1323-C1323. DOI: 10.1107/S2053273317082523  1
2017 Westbrook J, Markley J, Haruki, Velankar S, Burley S. PDBx/mmCIF: the foundation for the wwPDB OneDep system Acta Crystallographica Section A. 73. DOI: 10.1107/S2053273317082146  1
2017 Duarte JM, Bliven S, Lafita A, Capitani G, Burley SK. Automated evaluation of quaternary structures from protein crystal structures Acta Crystallographica Section a Foundations and Advances. 73: a117-a117. DOI: 10.1107/S010876731709883X  1
2017 Burley SK. Perspectives on the cryoEM 'resolution revolution' from the Protein Data Bank Acta Crystallographica Section A. 73. DOI: 10.1107/S0108767317097793  0.01
2017 Burley SK. Research data management: structure factors and atomic coordinates Acta Crystallographica Section A. 73. DOI: 10.1107/S0108767317096866  0.01
2017 Burley S. Demonstrating the value of three-dimensional macromolecular structures Acta Crystallographica Section A. 73. DOI: 10.1107/S0108767317095940  0.01
2016 Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W. A public database of macromolecular diffraction experiments. Acta Crystallographica. Section D, Structural Biology. 72: 1181-1193. PMID 27841751 DOI: 10.1107/S205327331708946X  0.01
2016 Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, ... ... Burley SK, et al. The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Research. PMID 27794042 DOI: 10.1093/Nar/Gkw1000  1
2016 Gathiaka S, Liu S, Chiu M, Yang H, Stuckey JA, Kang YN, Delproposto J, Kubish G, Dunbar JB, Carlson HA, Burley SK, Walters WP, Amaro RE, Feher VA, Gilson MK. D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions. Journal of Computer-Aided Molecular Design. 30: 651-668. PMID 27696240 DOI: 10.1007/S10822-016-9946-8  1
2016 Costanzo LD, Ghosh S, Zardecki C, Burley SK. Using the Tools and Resources of the RCSB Protein Data Bank. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 55: 1.9.1-1.9.35. PMID 27603019 DOI: 10.1002/Cpbi.13  1
2016 Prlić A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW. Integrating Genomic Information with Protein Sequence and 3D Atomic Level Structure at the RCSB Protein Data Bank. Bioinformatics (Oxford, England). PMID 27551105 DOI: 10.1093/Bioinformatics/Btw547  1
2016 Berman HM, Burley SK, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. The archiving and dissemination of biological structure data. Current Opinion in Structural Biology. 40: 17-22. PMID 27450113 DOI: 10.1016/J.Sbi.2016.06.018  1
2016 Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley SK. DCC: a Swiss army knife for structure factor analysis and validation. Journal of Applied Crystallography. 49: 1081-1084. PMID 27275151 DOI: 10.1107/S1600576716004428  1
2016 Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, et al. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure (London, England : 1993). 24: 502-8. PMID 27050687 DOI: 10.1016/J.Str.2016.02.017  1
2016 Rose P, Prlic A, Bi C, Christie C, Duarte J, Fang Z, Green RK, Kalro T, Randle C, Westbrook J, Woo J, Yang H, Young J, Zardecki C, Berman H, ... Burley S, et al. RCSB Protein Data Bank: Views of structural biology for basic and applied research F1000research. 5. DOI: 10.7490/F1000Research.1112696.1  1
2016 Zardecki C, Dutta S, Goodsell DS, Voigt M, Burley SK. RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules Journal of Chemical Education. 93: 569-575. DOI: 10.1021/Acs.Jchemed.5B00404  1
2015 Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, et al. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure (London, England : 1993). PMID 26095030 DOI: 10.1016/J.Str.2015.05.013  1
2015 Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology. Plos Biology. 13: e1002140. PMID 25942442 DOI: 10.1371/Journal.Pbio.1002140  1
2015 Wu TJ, Wang X, Zhang Y, Meng L, Kerrigan JE, Burley SK, Zheng XF. Identification of a Non-Gatekeeper Hot Spot for Drug-Resistant Mutations in mTOR Kinase. Cell Reports. 11: 446-59. PMID 25865887 DOI: 10.1016/J.Celrep.2015.03.040  1
2015 Rose PW, Prli? A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Research. 43: D345-56. PMID 25428375 DOI: 10.1093/Nar/Gku1214  1
2015 Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology Plos Biology. 13. DOI: 10.1371/journal.pbio.1002140  1
2014 Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallographica. Section D, Biological Crystallography. 70: 2780. PMID 25286863 DOI: 10.1107/S1399004714020513  1
2014 Manjasetty BA, Chance MR, Burley SK, Panjikar S, Almo SC. Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production. Biotechnology Reports (Amsterdam, Netherlands). 3: 73-85. PMID 25170437 DOI: 10.1016/J.Btre.2014.06.009  1
2014 Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley SK, Chait BT, Almo SC, Rout MP, et al. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Molecular & Cellular Proteomics : McP. 13: 2911-26. PMID 25139911 DOI: 10.1074/Mcp.M114.040915  1
2014 Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, et al. Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 53: 4727-38. PMID 24955762 DOI: 10.1021/Bi500595C  1
2014 Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, et al. Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. Proceedings of the National Academy of Sciences of the United States of America. 111: 8535-40. PMID 24872444 DOI: 10.1073/Pnas.1318703111  1
2013 Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley SK, Almo SC, Glasner ME. Divergent evolution of ligand binding in the o-succinylbenzoate synthase family. Biochemistry. 52: 7512-21. PMID 24060347 DOI: 10.1021/Bi401176D  1
2013 Daughtry KD, Huang H, Malashkevich V, Patskovsky Y, Liu W, Ramagopal U, Sauder JM, Burley SK, Almo SC, Dunaway-Mariano D, Allen KN. Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry. 52: 5372-86. PMID 23848398 DOI: 10.1021/Bi400659K  1
2013 Goodsell DS, Burley SK, Berman HM. Revealing structural views of biology. Biopolymers. 99: 817-24. PMID 23821527 DOI: 10.1002/Bip.22338  1
2013 Almo SC, Garforth SJ, Hillerich BS, Love JD, Seidel RD, Burley SK. Protein production from the structural genomics perspective: achievements and future needs. Current Opinion in Structural Biology. 23: 335-44. PMID 23642905 DOI: 10.1016/J.Sbi.2013.02.014  1
2013 Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, ... Burley SK, et al. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure (London, England : 1993). 21: 560-71. PMID 23499021 DOI: 10.1016/J.Str.2013.02.005  1
2013 Palani K, Burley SK, Swaminathan S. Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 15-9. PMID 23295479 DOI: 10.1107/S1744309112047276  1
2013 Burley SK. PDB40: The Protein Data Bank celebrates its 40th birthday. Biopolymers. 99: 165-7. PMID 23280389 DOI: 10.1002/Bip.22182  0.01
2013 Knapp S, Arruda P, Blagg J, Burley S, Drewry DH, Edwards A, Fabbro D, Gillespie P, Gray NS, Kuster B, Lackey KE, Mazzafera P, Tomkinson NC, Willson TM, Workman P, et al. A public-private partnership to unlock the untargeted kinome. Nature Chemical Biology. 9: 3-6. PMID 23238671 DOI: 10.1038/Nchembio.1113  1
2013 Burley S. RICHARD CRONIN, Paper Pellets: British Literary Culture after Waterloo. Notes and Queries. 60: 614-615. DOI: 10.1093/notesj/gjt168  0.01
2012 Palani K, Kumaran D, Burley SK, Swaminathan S. Structure of a periplasmic glucose-binding protein from Thermotoga maritima. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 68: 1460-4. PMID 23192024 DOI: 10.1107/S1744309112045241  1
2012 Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley SK, Tabita FR, Almo SC, Sweedler JS, Gerlt JA. 1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum Biochemistry. 51: 8324-8326. PMID 23035785 DOI: 10.1021/Bi301215G  1
2012 Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley SK, Almo SC, Mehta G, Macmillan AM. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases Rna. 18: 2020-2028. PMID 23006625 DOI: 10.1261/Rna.033100.112  1
2012 Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, ... ... Burley SK, et al. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins. 80: 2110-6. PMID 22544723 DOI: 10.1002/Prot.24102  1
2012 Wasserman SR, Koss JW, Sojitra ST, Morisco LL, Burley SK. Rapid-access, high-throughput synchrotron crystallography for drug discovery. Trends in Pharmacological Sciences. 33: 261-7. PMID 22521107 DOI: 10.1016/J.Tips.2012.03.009  1
2012 Hobbs ME, Malashkevich V, Williams HJ, Xu C, Sauder JM, Burley SK, Almo SC, Raushel FM. Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry. 51: 3497-507. PMID 22475079 DOI: 10.1021/Bi300307B  1
2012 Agarwal R, Burley SK, Swaminathan S. Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase. Proteins. 80: 261-8. PMID 22072612 DOI: 10.1002/Prot.23202  1
2012 Burley S. PAMELA CLEMIT, ed., The Letters of William Godwin. Volume I: 1778-1797. Notes and Queries. 59: 605-606. DOI: 10.1093/notesj/gjs171  0.01
2012 Joong Kim S, Sampathkumar P, Fernandez-Martinez J, Phillips J, Schneidman D, Matsui T, Tsuruta H, Sauder M, Burley SK, Rout M, Sali A. Integrative Structure Determination of the Components of the Nuclear Pore Complex by X-Ray Crystallography, Small Angle X-Ray Scattering, Electron Microscopy, NMR, and Comparative Modeling Biophysical Journal. 102: 619a. DOI: 10.1016/J.Bpj.2011.11.3371  1
2011 Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley SK, Swaminathan S, Lindahl PA, Raushel FM. The catalase activity of diiron adenine deaminase. Protein Science : a Publication of the Protein Society. 20: 2080-94. PMID 21998098 DOI: 10.1002/Pro.748  1
2011 Suttisansanee U, Lau K, Lagishetty S, Rao KN, Swaminathan S, Sauder JM, Burley SK, Honek JF. Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum. The Journal of Biological Chemistry. 286: 38367-74. PMID 21914803 DOI: 10.1074/Jbc.M111.251603  1
2011 Burley SK, Sonenberg N. Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD. Molecular Cell. 43: 163-5. PMID 21777807 DOI: 10.1016/J.Molcel.2011.07.003  1
2011 Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (London, England : 1993). 19: 930-44. PMID 21742260 DOI: 10.1016/J.Str.2011.05.002  1
2011 Goble AM, Zhang Z, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. 50: 6589-97. PMID 21710971 DOI: 10.1021/Bi200868U  1
2011 Shi W, Punta M, Bohon J, Sauder JM, D'Mello R, Sullivan M, Toomey J, Abel D, Lippi M, Passerini A, Frasconi P, Burley SK, Rost B, Chance MR. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Research. 21: 898-907. PMID 21482623 DOI: 10.1101/Gr.115097.110  1
2011 Bagaria A, Kumaran D, Burley SK, Swaminathan S. Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins. 79: 1352-7. PMID 21387413 DOI: 10.1002/Prot.22965  1
2011 Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, ... ... Burley SK, et al. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins. 79: 1672-7. PMID 21365675 DOI: 10.1002/Prot.22973  1
2011 Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM. Enzymatic deamination of the epigenetic base N-6-methyladenine. Journal of the American Chemical Society. 133: 2080-3. PMID 21275375 DOI: 10.1021/Ja110157U  1
2011 Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM. Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. 50: 1917-27. PMID 21247091 DOI: 10.1021/Bi101788N  1
2011 Zhang Z, Zhou R, Sauder JM, Tonge PJ, Burley SK, Swaminathan S. Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila. Journal of Molecular Biology. 406: 313-24. PMID 21185305 DOI: 10.1016/J.Jmb.2010.12.011  1
2011 Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, ... Burley SK, et al. ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research. 39: D465-74. PMID 21097780 DOI: 10.1093/nar/gkq1091  1
2011 Burley S. Duncan Wu, William Hazlitt: The First Modern Man (Oxford and New York: Oxford University Press, 2008), pp. xxvi + 577. £25 hardback. 9780199549580. Romanticism. 17: 126-131. DOI: 10.3366/rom.2011.0015  0.01
2011 Wasserman SR, Holdmann MM, Koss JW, Lewis D, Morisco LL, Sojitra ST, Visscher KD, Burley SK. Automated synchrotron crystallography for drug discovery: the LRL-CAT beamline at the APS Acta Crystallographica Section A. 67. DOI: 10.1107/S0108767311098941  1
2010 Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley SK, Leigh JA, Gonen T. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure (London, England : 1993). 18: 1512-21. PMID 21070950 DOI: 10.1016/J.Str.2010.08.014  1
2010 Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley SK, Rutter J. Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation. The Journal of Biological Chemistry. 285: 41034-43. PMID 20943661 DOI: 10.1074/Jbc.M110.157594  1
2010 Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, ... ... Burley SK, et al. Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 78: 3056-62. PMID 20737437 DOI: 10.1002/Prot.22829  1
2010 Gheyi T, Rodgers L, Romero R, Sauder JM, Burley SK. Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination. Journal of the American Society For Mass Spectrometry. 21: 1795-801. PMID 20685133 DOI: 10.1016/J.Jasms.2010.06.015  1
2010 Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo SC, Raushel FM. Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry. 49: 6791-803. PMID 20604542 DOI: 10.1021/Bi100897U  1
2010 Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase . Biochemistry. 49: 4374-82. PMID 20415463 DOI: 10.1021/Bi100252S  1
2010 Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, ... ... Burley SK, et al. Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145. Proteins. 78: 1992-8. PMID 20310066 DOI: 10.1002/Prot.22707  1
2010 Sampathkumar P, Ozyurt SA, Miller SA, Bain KT, Rutter ME, Gheyi T, Abrams B, Wang Y, Atwell S, Luz JG, Thompson DA, Wasserman SR, Emtage JS, Park EC, Rongo C, ... ... Burley SK, et al. Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1. Journal of Molecular Biology. 397: 883-92. PMID 20156452 DOI: 10.1016/J.Jmb.2010.02.017  1
2010 Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. Safeguarding the integrity of protein archive. Nature. 463: 425. PMID 20110969 DOI: 10.1038/463425C  1
2010 Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM. The hunt for 8-oxoguanine deaminase. Journal of the American Chemical Society. 132: 1762-3. PMID 20088583 DOI: 10.1021/Ja909817D  1
2010 Lakshminarasimhan D, Eswaramoorthy S, Burley SK, Swaminathan S. Structure of YqgQ protein from Bacillus subtilis, a conserved hypothetical protein. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 8-11. PMID 20057058 DOI: 10.1107/S1744309109047009  1
2010 Ragumani S, Sauder JM, Burley SK, Swaminathan S. Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis. Proteins. 78: 487-91. PMID 19787770 DOI: 10.1002/Prot.22585  1
2009 Buchanan SG, Hendle J, Lee PS, Smith CR, Bounaud PY, Jessen KA, Tang CM, Huser NH, Felce JD, Froning KJ, Peterman MC, Aubol BE, Gessert SF, Sauder JM, Schwinn KD, ... ... Burley SK, et al. SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo. Molecular Cancer Therapeutics. 8: 3181-90. PMID 19934279 DOI: 10.1158/1535-7163.Mct-09-0477  1
2009 Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley SK, Almo SC, Jacobson MP, Gerlt JA. Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis . Biochemistry. 48: 11546-58. PMID 19883118 DOI: 10.1021/Bi901731C  1
2009 Sampaleanu LM, Bonanno JB, Ayers M, Koo J, Tammam S, Burley SK, Almo SC, Burrows LL, Howell PL. Periplasmic domains of Pseudomonas aeruginosa PilN and PilO form a stable heterodimeric complex. Journal of Molecular Biology. 394: 143-59. PMID 19857646 DOI: 10.1016/J.Jmb.2009.09.037  1
2009 Robert F, Williams C, Yan Y, Donohue E, Cencic R, Burley SK, Pelletier J. Blocking UV-induced eIF2alpha phosphorylation with small molecule inhibitors of GCN2. Chemical Biology & Drug Design. 74: 57-67. PMID 19519745 DOI: 10.1111/J.1747-0285.2009.00827.X  0.04
2009 Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. 48: 4567-76. PMID 19358546 DOI: 10.1021/Bi900453U  1
2009 Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM. Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes. Biochemistry. 48: 3730-42. PMID 19281183 DOI: 10.1021/Bi900111Q  1
2009 Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ. Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proceedings of the National Academy of Sciences of the United States of America. 106: 4154-9. PMID 19251641 DOI: 10.1073/Pnas.0813360106  1
2009 Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA. Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Biochemistry. 48: 1445-53. PMID 19220063 DOI: 10.1021/Bi802277H  1
2009 Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, et al. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. Journal of Structural and Functional Genomics. 10: 107-25. PMID 19219566 DOI: 10.1007/S10969-008-9056-5  1
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/J.Str.2008.12.014  1
2009 Burley S. The Lost Polemics of William Hazlitt (1737-1820) The Review of English Studies. 61: 259-275. DOI: 10.1093/res/hgp059  0.01
2009 Burley S. DANIEL WHITE, Early Romanticism and Religious Dissent. Notes and Queries. 56: 294-295. DOI: 10.1093/notesj/gjp068  0.01
2009 Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA. Evolution of Enzymatic Activities in the Enolase Superfamily: Stereochemically Distinct Mechanisms in Two Families ofcis,cis-Muconate Lactonizing Enzymes Biochemistry. 48: 2569-2570. DOI: 10.1021/Bi900265W  0.01
2008 Rao KN, Burley SK, Swaminathan S. UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function. Plos One. 3: e3903. PMID 19079550 DOI: 10.1371/Journal.Pone.0003903  1
2008 Sauder MJ, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S, Burley SK. High throughput protein production and crystallization at NYSGXRC. Methods in Molecular Biology (Clifton, N.J.). 426: 561-75. PMID 18542890 DOI: 10.1007/978-1-60327-058-8_37  1
2008 Ragumani S, Kumaran D, Burley SK, Swaminathan S. Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae. Proteins. 72: 1096-103. PMID 18498110 DOI: 10.1002/Prot.22095  1
2008 Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. A common catalytic mechanism for proteins of the HutI family. Biochemistry. 47: 5608-15. PMID 18442260 DOI: 10.1021/Bi800180G  1
2008 O'Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley SK, Deininger MW. SGX393 inhibits the CML mutant Bcr-AblT315I and preempts in vitro resistance when combined with nilotinib or dasatinib. Proceedings of the National Academy of Sciences of the United States of America. 105: 5507-12. PMID 18367669 DOI: 10.1073/Pnas.0800587105  1
2008 Agarwal R, Burley SK, Swaminathan S. A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure. Proteins. 71: 1038-41. PMID 18247349 DOI: 10.1002/Prot.21962  1
2008 Agarwal R, Burley SK, Swaminathan S. Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex. The Journal of Biological Chemistry. 283: 8946-53. PMID 18245086 DOI: 10.1074/Jbc.M708945200  1
2008 Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, ... ... Burley SK, et al. Protein production and purification. Nature Methods. 5: 135-46. PMID 18235434 DOI: 10.1038/Nmeth.F.202  1
2008 Burley SK, Joachimiak A, Montelione GT, Wilson IA. Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers Structure. 16: 5-11. PMID 18184575 DOI: 10.1016/J.Str.2007.12.002  1
2008 Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S. X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. 71: 534-40. PMID 18175317 DOI: 10.1002/Prot.21888  1
2008 Rao KN, Burley SK, Swaminathan S. Crystal structure of a conserved protein of unknown function (MJ1651) from Methanococcus jannaschii. Proteins. 70: 572-7. PMID 17910070 DOI: 10.1002/Prot.21646  1
2008 Burley S, Wasserman S, Smith D, Koss J, Morisco L. Rapid synchrotron X-ray crystallography for drug discovery using the SGX-CAT beamline at the APS Acta Crystallographica Section a Foundations of Crystallography. 64: C29-C29. DOI: 10.1107/S0108767308099108  0.01
2008 Burley S. Hazlitt's Preface to Political Essays and Walter Scott's Old Mortality Notes and Queries. 55: 437-439. DOI: 10.1093/notesj/gjn131  0.01
2007 Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, ... ... Burley SK, et al. Structural genomics of protein phosphatases. Journal of Structural and Functional Genomics. 8: 121-40. PMID 18058037 DOI: 10.1007/S10969-007-9036-1  1
2007 Tyagi R, Burley SK, Swaminathan S. X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family. Bmc Structural Biology. 7: 62. PMID 17908300 DOI: 10.1186/1472-6807-7-62  1
2007 Tyagi R, Kumaran D, Burley SK, Swaminathan S. X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. 69: 652-8. PMID 17640072 DOI: 10.1002/Prot.21559  1
2007 Agarwal R, Burley SK, Swaminathan S. Structural analysis of a ternary complex of allantoate amidohydrolase from Escherichia coli reveals its mechanics. Journal of Molecular Biology. 368: 450-63. PMID 17362992 DOI: 10.1016/J.Jmb.2007.02.028  1
2007 Sabini E, Hazra S, Konrad M, Burley SK, Lavie A. Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Research. 35: 186-92. PMID 17158155 DOI: 10.1093/Nar/Gkl1038  1
2007 O’Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley SK, Deininger MW. SGX70393 Inhibits Bcr-AblT315I In Vitro and In Vivo and Completely Suppresses Resistance When Combined with Nilotinib or Dasatinib. Blood. 110: 535-535. DOI: 10.1182/Blood.V110.11.535.535  1
2007 Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S. Erratum: Mechanism of action of a flavincontaining monooxygenase (Proceedings of the National Academy of Sciences of the United States of America (2006) 103, (9832-9837) DOI: 10.1073/pnas.0602398103) Proceedings of the National Academy of Sciences of the United States of America. 104. DOI: 10.1073/Pnas.0707147104  1
2006 Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, et al. Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules Structure. 14: 1211-1217. PMID 16955948 DOI: 10.1016/J.Str.2006.06.005  1
2006 Rao KN, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins. 65: 514-8. PMID 16909422 DOI: 10.1002/Prot.21079  1
2006 Kumaran D, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires". Proteins. 64: 851-62. PMID 16838328 DOI: 10.1002/Prot.21039  1
2006 Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications. Protein Science : a Publication of the Protein Society. 15: 1735-44. PMID 16815921 DOI: 10.1110/Ps.062096606  1
2006 Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S. Mechanism of action of a flavin-containing monooxygenase. Proceedings of the National Academy of Sciences of the United States of America. 103: 9832-7. PMID 16777962 DOI: 10.1073/Pnas.0602398103  1
2006 Bellsolell L, Cho-Park PF, Poulin F, Sonenberg N, Burley SK. Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1. Structure (London, England : 1993). 14: 913-23. PMID 16698552 DOI: 10.1016/J.Str.2006.03.012  1
2006 Burley SK. Cancer and kinases: reports from the front line. Genome Biology. 7: 314. PMID 16677415 DOI: 10.1186/Gb-2006-7-4-314  0.01
2006 Nair SK, Burley SK. Structural aspects of interactions within the Myc/Max/Mad network. Current Topics in Microbiology and Immunology. 302: 123-43. PMID 16620027 DOI: 10.1007/3-540-32952-8_5  1
2006 Agarwal R, Bonanno JB, Burley SK, Swaminathan S. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. Acta Crystallographica. Section D, Biological Crystallography. 62: 383-91. PMID 16552139 DOI: 10.1107/S0907444906001600  1
2006 Seetharaman J, Rajashankar KR, Solorzano V, Kniewel R, Lima CD, Bonanno JB, Burley SK, Swaminathan S. Crystal structures of two putative phosphoheptose isomerases. Proteins. 63: 1092-6. PMID 16477602 DOI: 10.1002/Prot.20908  1
2006 Seetharaman J, Kumaran D, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis. Proteins. 63: 1087-91. PMID 16475182 DOI: 10.1002/Prot.20924  1
2006 Kelner MJ, Giles FJ, Feldman EJ, Roboz GJ, Deangelo DJ, Burley SK. Dosing of troxacitabine (Troxatyl [T], SGX-145) based on renal function Journal of Clinical Oncology. 24: 2025-2025. DOI: 10.1200/jco.2006.24.18_suppl.2025  0.04
2006 O’Hare T, Eide CA, Tyner JW, Wong MJ, Smith CA, Corbin AS, Buchanan S, Jessen KA, Tang C, Holme K, Burley SK, Deininger MW. Inhibition of T315I Bcr-Abl and Other Imatinib-Resistant Bcr-Abl Mutants by the Selective Abl Kinase Inhibitor SGX70393. Blood. 108: 1373-1373. DOI: 10.1182/Blood.V108.11.1373.1373  1
2005 Badger J, Hendle J, Burley SK, Kissinger CR. Deposit3D: a tool for automating structure depositions to the Protein Data Bank. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 818-20. PMID 16511167 DOI: 10.1107/S1744309105026126  1
2005 Matte A, Louie GV, Sivaraman J, Cygler M, Burley SK. Structure of the pseudouridine synthase RsuA from Haemophilus influenzae. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 350-4. PMID 16511038 DOI: 10.1107/S1744309105005920  0.01
2005 Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, ... ... Burley SK, et al. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. Journal of Structural and Functional Genomics. 6: 225-32. PMID 16211523 DOI: 10.1007/S10969-005-6827-0  1
2005 Gao X, Bain K, Bonanno JB, Buchanan M, Henderson D, Lorimer D, Marsh C, Reynes JA, Sauder JM, Schwinn K, Thai C, Burley SK. High-throughput limited proteolysis/mass spectrometry for protein domain elucidation Journal of Structural and Functional Genomics. 6: 129-134. PMID 16211509 DOI: 10.1007/S10969-005-1918-5  1
2005 Burley SK, Park F. Meeting the challenges of drug discovery: a multidisciplinary re-evaluation of current practices. Keystone Symposium 'Meeting the Challenges of Drug Discovery', Vancouver, Canada, 15-19 January 2005. Genome Biology. 6: 330. PMID 15998459 DOI: 10.1186/Gb-2005-6-7-330  0.01
2005 Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley SK. Structural basis for autoinhibition and mutational activation of eukaryotic initiation factor 2α protein kinase GCN2 Journal of Biological Chemistry. 280: 29289-29299. PMID 15964839 DOI: 10.1074/Jbc.M504096200  1
2005 Sickmier EA, Brekasis D, Paranawithana S, Bonanno JB, Paget MS, Burley SK, Kielkopf CL. X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing. Structure (London, England : 1993). 13: 43-54. PMID 15642260 DOI: 10.1016/J.Str.2004.10.012  1
2005 Burley SK. Application of FASTTM Fragment-Based Lead Discovery and Structure-Guided Design to Discovery of Small Molecule Inhibitors of BCR-ABL Tyrosine Kinase Active Against the T315I Imatinib-Resistant Mutant. Blood. 106: 698-698. DOI: 10.1182/blood.v106.11.698.698  0.01
2005 Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley SK. Structural basis for autoinhibition and activation of eIF2α protein kinase GCN2 Acta Crystallographica Section a Foundations of Crystallography. 61: c233-c234. DOI: 10.1107/S0108767305090045  1
2004 Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK. She2p is a novel RNA binding protein with a basic helical hairpin motif. Cell. 119: 491-502. PMID 15537539 DOI: 10.1016/J.Cell.2004.10.018  1
2004 Atwell S, Adams JM, Badger J, Buchanan MD, Feil IK, Froning KJ, Gao X, Hendle J, Keegan K, Leon BC, Müller-Dieckmann HJ, Nienaber VL, Noland BW, Post K, Rajashankar KR, ... ... Burley SK, et al. A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase. The Journal of Biological Chemistry. 279: 55827-32. PMID 15507431 DOI: 10.1074/Jbc.M409792200  1
2004 Roll-Mecak A, Alone P, Cao C, Dever TE, Burley SK. X-ray Structure of Translation Initiation Factor eIF2γ: Implications for tRNA and eIF2α binding Journal of Biological Chemistry. 279: 10634-10642. PMID 14688270 DOI: 10.1074/Jbc.M310418200  1
2004 Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM. Structural bases for CRMP function in plexin-dependent semaphorin3A signaling. The Embo Journal. 23: 9-22. PMID 14685275 DOI: 10.1038/Sj.Emboj.7600021  1
2004 Lewis HA, Buchanan SG, Burley SK, Conners K, Dickey M, Dorwart M, Fowler R, Gao X, Guggino WB, Hendrickson WA, Hunt JF, Kearins MC, Lorimer D, Maloney PC, Post KW, et al. Structure of nucleotide-binding domain 1 of the cystic fibrosis transmembrane conductance regulator. The Embo Journal. 23: 282-93. PMID 14685259 DOI: 10.1038/Sj.Emboj.7600040  1
2004 Burley S. John Stoddart's Remarks on Local Scenery and Manners in Scotland (1801) and the Snowdon Episode of The Prelude (1805) Notes and Queries. 51: 148-149. DOI: 10.1093/nq/51.2.148  0.01
2003 Padyana AK, Burley SK. Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution. Structure (London, England : 1993). 11: 1005-13. PMID 12906831 DOI: 10.1016/S0969-2126(03)00159-X  1
2003 Kamada K, Hanaoka F, Burley SK. Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition. Molecular Cell. 11: 875-84. PMID 12718874 DOI: 10.1016/S1097-2765(03)00097-2  1
2003 Burley SK, Bonanno JB. Structural genomics. Methods of Biochemical Analysis. 44: 591-612. PMID 12647406  1
2003 Trester-Zedlitz M, Kamada K, Burley SK, Fenyö D, Chait BT, Muir TW. A modular cross-linking approach for exploring protein interactions. Journal of the American Chemical Society. 125: 2416-25. PMID 12603129 DOI: 10.1021/Ja026917A  1
2003 Kamada K, Roeder RG, Burley SK. Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF. Proceedings of the National Academy of Sciences of the United States of America. 100: 2296-9. PMID 12591941 DOI: 10.1073/Pnas.262798199  1
2003 Zuberek J, Wyslouch-Cieszynska A, Niedzwiecka A, Dadlez M, Stepinski J, Augustyniak W, Gingras AC, Zhang Z, Burley SK, Sonenberg N, Stolarski R, Darzynkiewicz E. Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein. Rna (New York, N.Y.). 9: 52-61. PMID 12554876 DOI: 10.1261/Rna.2133403  1
2003 Nair SK, Burley SK. X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors. Cell. 112: 193-205. PMID 12553908 DOI: 10.1016/S0092-8674(02)01284-9  1
2003 Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley SK. X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus. Proteins. 50: 170-3. PMID 12471609 DOI: 10.1002/Prot.10272  1
2003 Pilloff D, Dabovic K, Romanowski MJ, Bonanno JB, Doherty M, Burley SK, Leyh TS. The kinetic mechanism of phosphomevalonate kinase. The Journal of Biological Chemistry. 278: 4510-5. PMID 12424232 DOI: 10.1074/Jbc.M210551200  1
2003 Burley SK. Book Review Rosalind Franklin: The Dark Lady of DNA By Brenda Maddox. 380 pp., illustrated. New York, HarperCollins, 2002. $29.95. 0-06-018407-8 New England Journal of Medicine. 348: 1729-1730. DOI: 10.1056/NEJM200304243481724  0.01
2002 Shin BS, Maag D, Roll-Mecak A, Arefin MS, Burley SK, Lorsch JR, Dever TE. Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity. Cell. 111: 1015-25. PMID 12507428 DOI: 10.1016/S0092-8674(02)01171-6  1
2002 Marcotrigiano J, Burley SK. Structural biology of eIF4F: mRNA recognition and preparation in eukaryotic translation initiation. Advances in Protein Chemistry. 61: 269-97. PMID 12461826 DOI: 10.1016/S0065-3233(02)61007-1  1
2002 Ray SS, Bonanno JB, Rajashankar KR, Pinho MG, He G, De Lencastre H, Tomasz A, Burley SK. Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (London, England : 1993). 10: 1499-508. PMID 12429091 DOI: 10.1016/S0969-2126(02)00880-8  1
2002 Kielkopf CL, Burley SK. X-ray structures of threonine aldolase complexes: structural basis of substrate recognition. Biochemistry. 41: 11711-20. PMID 12269813 DOI: 10.1021/Bi020393+  1
2002 Burley SK, Bonanno JB. Structuring the universe of proteins. Annual Review of Genomics and Human Genetics. 3: 243-62. PMID 12194989 DOI: 10.1146/Annurev.Genom.3.022502.103227  1
2002 Burley SK, Bonanno JB. Structural genomics of proteins from conserved biochemical pathways and processes. Current Opinion in Structural Biology. 12: 383-91. PMID 12127459 DOI: 10.1016/S0959-440X(02)00330-5  1
2002 Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK. X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Proteins. 48: 431-6. PMID 12112709 DOI: 10.1002/Prot.10151  1
2002 Groft CM, Burley SK. Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Molecular Cell. 9: 1273-83. PMID 12086624 DOI: 10.1016/S1097-2765(02)00555-5  1
2002 Niedzwiecka A, Marcotrigiano J, Stepinski J, Jankowska-Anyszka M, Wyslouch-Cieszynska A, Dadlez M, Gingras AC, Mak P, Darzynkiewicz E, Sonenberg N, Burley SK, Stolarski R. Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. Journal of Molecular Biology. 319: 615-35. PMID 12054859 DOI: 10.1016/S0022-2836(02)00328-5  1
2002 Romanowski MJ, Soccio RE, Breslow JL, Burley SK. Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain Proceedings of the National Academy of Sciences of the United States of America. 99: 6949-6954. PMID 12011453 DOI: 10.1073/Pnas.052140699  1
2002 Soccio RE, Adams RM, Romanowski MJ, Sehayek E, Burley SK, Breslow JL. The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. Proceedings of the National Academy of Sciences of the United States of America. 99: 6943-8. PMID 12011452 DOI: 10.1073/Pnas.052143799  1
2002 Romanowski MJ, Bonanno JB, Burley SK. Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily Proteins: Structure, Function and Genetics. 47: 568-571. PMID 12001237 DOI: 10.1002/Prot.10118  1
2002 Romanowski MJ, Bonanno JB, Burley SK. Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold Proteins: Structure, Function and Genetics. 47: 563-567. PMID 12001236 DOI: 10.1002/Prot.10121  1
2002 Romanowski MJ, Burley SK. Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam Proteins: Structure, Function and Genetics. 47: 558-562. PMID 12001235 DOI: 10.1002/Prot.10099  1
2002 Burley SK, Kamada K. Transcription factor complexes. Current Opinion in Structural Biology. 12: 225-30. PMID 11959501 DOI: 10.1016/S0959-440X(02)00314-7  1
2002 Romanowski MJ, Gibney SA, Burley SK. Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17 Proteins: Structure, Function and Genetics. 47: 403-407. PMID 11948793 DOI: 10.1002/Prot.10102  1
2002 Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, et al. Structural genomics: a pipeline for providing structures for the biologist. Protein Science : a Publication of the Protein Society. 11: 723-38. PMID 11910018 DOI: 10.1110/Ps.4570102  1
2002 Wolf E, De Angelis J, Khalil EM, Cole PA, Burley SK. X-ray crystallographic studies of serotonin N-acetyltransferase catalysis and inhibition Journal of Molecular Biology. 317: 215-224. PMID 11902838 DOI: 10.1006/Jmbi.2001.5371  1
2002 Scheibner KA, De Angelis J, Burley SK, Cole PA. Investigation of the roles of catalytic residues in serotonin N-acetyltransferase. The Journal of Biological Chemistry. 277: 18118-26. PMID 11884405 DOI: 10.1074/Jbc.M200595200  1
2002 Deo RC, Groft CM, Rajashankar KR, Burley SK. Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer. Cell. 108: 71-81. PMID 11792322 DOI: 10.1016/S0092-8674(01)00632-8  1
2002 Ray S, Bonanno J, Chen H, Wu S, Lencastre HD, Tomasz A, Burley S. Crystal Structure Of A Methanococcus Jannaschii Dna-Binding Protein: Implications For Antibiotic Resistance In Staphyloccoccus Aureus Proteins. 50. DOI: 10.2210/Pdb1Ku9/Pdb  1
2002 Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK. Crystal structure ofSaccharomyces cerevisiaehomologous mitochondrial matrix factor 1 (Hmf1) Acta Crystallographica Section a Foundations of Crystallography. 58: c299-c299. DOI: 10.1107/S0108767302096940  1
2002 Roll-Mecak A, Cao C, Dever TE, Burley SK. X-ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding Acta Crystallographica Section a Foundations of Crystallography. 58: c5-c5. DOI: 10.1107/S0108767302085288  0.01
2001 Dever TE, Roll-Mecak A, Choi SK, Lee JH, Cao C, Shin BS, Burley SK. Universal translation initiation factor IF2/eIF5B Cold Spring Harbor Symposia On Quantitative Biology. 66: 417-424. PMID 12762044 DOI: 10.1101/Sqb.2001.66.417  1
2001 Roll-Mecak A, Shin BS, Dever TE, Burley SK. Engaging the ribosome: Universal IFs of translation Trends in Biochemical Sciences. 26: 705-709. PMID 11738593 DOI: 10.1016/S0968-0004(01)02024-2  1
2001 Bonanno JB, Edo C, Eswar N, Pieper U, Romanowski MJ, Ilyin V, Gerchman SE, Kycia H, Studier FW, Sali A, Burley SK. Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 98: 12896-901. PMID 11698677 DOI: 10.1073/Pnas.181466998  1
2001 Gingras AC, Raught B, Gygi SP, Niedzwiecka A, Miron M, Burley SK, Polakiewicz RD, Wyslouch-Cieszynska A, Aebersold R, Sonenberg N. Hierarchical phosphorylation of the translation inhibitor 4E-BP1. Genes & Development. 15: 2852-64. PMID 11691836 DOI: 10.1101/Gad.912401  1
2001 Olson WK, Bansal M, Burley SK, Dickerson RE, Gerstein M, Harvey SC, Heinemann U, Lu XJ, Neidle S, Shakked Z, Sklenar H, Suzuki M, Tung CS, Westhof E, Wolberger C, et al. A standard reference frame for the description of nucleic acid base-pair geometry. Journal of Molecular Biology. 313: 229-37. PMID 11601858 DOI: 10.1006/Jmbi.2001.4987  1
2001 Kielkopf CL, Rodionova NA, Green MR, Burley SK. A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell. 106: 595-605. PMID 11551507 DOI: 10.1016/S0092-8674(01)00480-9  1
2001 Kamada K, Shu F, Chen H, Malik S, Stelzer G, Roeder RG, Meisterernst M, Burley SK. Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex. Cell. 106: 71-81. PMID 11461703 DOI: 10.1016/S0092-8674(01)00417-2  1
2001 Deo RC, Sonenberg N, Burley SK. X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 98: 4414-9. PMID 11287654 DOI: 10.1073/Pnas.071552198  1
2001 Houbaviy HB, Burley SK. Thermodynamic analysis of the interaction between YY1 and the AAV P5 promoter initiator element. Chemistry & Biology. 8: 179-87. PMID 11251291 DOI: 10.1016/S1074-5521(00)90066-8  1
2001 Kamada K, De Angelis J, Roeder RG, Burley SK. Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF Proceedings of the National Academy of Sciences of the United States of America. 98: 3115-3120. PMID 11248041 DOI: 10.1073/Pnas.051631098  1
2001 Khaleghpour K, Svitkin YV, Craig AW, DeMaria CT, Deo RC, Burley SK, Sonenberg N. Translational repression by a novel partner of human poly(A) binding protein, Paip2. Molecular Cell. 7: 205-16. PMID 11172725 DOI: 10.1016/S1097-2765(01)00168-X  1
2001 Marcotrigiano J, Lomakin IB, Sonenberg N, Pestova TV, Hellen CU, Burley SK. A conserved HEAT domain within eIF4G directs assembly of the translation initiation machinery. Molecular Cell. 7: 193-203. PMID 11172724 DOI: 10.1016/S1097-2765(01)00167-8  1
2001 Groft CM, Beckmann R, Sali A, Burley SK. Nature Structural Biology. 8: 745-745. DOI: 10.1038/Nsb0901-745  1
2000 Roll-Mecak A, Cao C, Dever TE, Burley SK. X-ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding Cell. 103: 781-792. PMID 11114334 DOI: 10.1107/S0108767302085288  1
2000 Burley SK. An overview of structural genomics. Nature Structural Biology. 7: 932-4. PMID 11103991 DOI: 10.1038/80697  0.01
2000 Groft CM, Beckmann R, Sali A, Burley SK. Crystal structures of ribosome anti-association factor IF6. Nature Structural Biology. 7: 1156-64. PMID 11101899 DOI: 10.1038/82017  1
2000 Sang Ki Choi, Olsen DS, Roll-Mecak A, Martung A, Remo KL, Burley SK, Hinnebusch AG, Dever TE. Physical and functional interaction between the eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2 Molecular and Cellular Biology. 20: 7183-7191. PMID 10982835 DOI: 10.1128/Mcb.20.19.7183-7191.2000  1
2000 Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain. Proceedings of the National Academy of Sciences of the United States of America. 97: 5740-5. PMID 10811881 DOI: 10.1073/Pnas.090553997  1
2000 Nair SK, Burley SK. Recognizing DNA in the library. Nature. 404: 715, 717-8. PMID 10783871 DOI: 10.1038/35008182  1
2000 Rhodes D, Burley SK. Protein-nucleic acid interactions. Current Opinion in Structural Biology. 10: 75-7. PMID 10766517 DOI: 10.1016/S0959-440X(99)00052-4  1
2000 Gajiwala KS, Chen H, Cornille F, Roques BP, Reith W, Mach B, Burley SK. Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding. Nature. 403: 916-21. PMID 10706293 DOI: 10.1038/35002634  1
2000 Gajiwala KS, Burley SK. Winged helix proteins. Current Opinion in Structural Biology. 10: 110-6. PMID 10679470 DOI: 10.1016/S0959-440X(99)00057-3  1
2000 Lewis HA, Musunuru K, Jensen KB, Edo C, Chen H, Darnell RB, Burley SK. Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome. Cell. 100: 323-32. PMID 10676814 DOI: 10.1016/S0092-8674(00)80668-6  1
2000 Gajiwala KS, Burley SK. HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. Journal of Molecular Biology. 295: 605-12. PMID 10623550 DOI: 10.1006/Jmbi.1999.3347  1
2000 Nair SK, Burley SK. Erratum: On the verge of magnetism Nature. 406: 581-581. DOI: 10.1038/35020681  1
1999 Patikoglou GA, Kim JL, Sun L, Yang SH, Kodadek T, Burley SK. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & Development. 13: 3217-30. PMID 10617571 DOI: 10.1101/Gad.13.24.3217  1
1999 Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. Structural genomics: beyond the human genome project. Nature Genetics. 23: 151-7. PMID 10508510 DOI: 10.1038/13783  1
1999 Deo RC, Bonanno JB, Sonenberg N, Burley SK. Recognition of polyadenylate RNA by the poly(A)-binding protein Cell. 98: 835-845. PMID 10499800 DOI: 10.1016/S0092-8674(00)81517-2  1
1999 Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G. Molecular Cell. 3: 707-16. PMID 10394359 DOI: 10.1016/S1097-2765(01)80003-4  1
1999 Lewis HA, Chen H, Edo C, Buckanovich RJ, Yang YY, Musunuru K, Zhong R, Darnell RB, Burley SK. Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. Structure (London, England : 1993). 7: 191-203. PMID 10368286 DOI: 10.1016/S0969-2126(99)80025-2  1
1999 Lee JH, Choi SK, Roll-Mecak A, Burley SK, Dever TE. Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2 Proceedings of the National Academy of Sciences of the United States of America. 96: 4342-4347. PMID 10200264 DOI: 10.1073/Pnas.96.8.4342  1
1998 Burley SK. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harbor Symposia On Quantitative Biology. 63: 33-40. PMID 10384268 DOI: 10.1101/sqb.1998.63.33  0.01
1998 Burley SK, Roeder RG. TATA box mimicry by TFIID: Autoinhibition of pol II transcription Cell. 94: 551-553. PMID 9741619 DOI: 10.1016/S0092-8674(00)81596-2  1
1998 Wolf E, Vassilev A, Makino Y, Sali A, Nakatani Y, Burley SK. Crystal structure of a GCN5-related N-acetyltransferase: Serratia marcescens aminoglycoside 3-N-acetyltransferase. Cell. 94: 439-49. PMID 9727487 DOI: 10.1016/S0092-8674(00)81585-8  1
1998 Sturm NS, Lin Y, Burley SK, Krstenansky JL, Ahn JM, Azizeh BY, Trivedi D, Hruby VJ. Structure-function studies on positions 17, 18, and 21 replacement analogues of glucagon: the importance of charged residues and salt bridges in glucagon biological activity. Journal of Medicinal Chemistry. 41: 2693-700. PMID 9667960 DOI: 10.1021/Jm980084A  0.01
1998 Párraga A, Bellsolell L, Ferré-D'Amaré AR, Burley SK. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure (London, England : 1993). 6: 661-72. PMID 9634703 DOI: 10.1016/S0969-2126(98)00067-7  1
1998 Rom E, Kim HC, Gingras AC, Marcotrigiano J, Favre D, Olsen H, Burley SK, Sonenberg N. Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein. The Journal of Biological Chemistry. 273: 13104-9. PMID 9582349 DOI: 10.1074/Jbc.273.21.13104  1
1998 Sonenberg N, Burley SK, Gingras AC. RNA chiropractics. Nature Structural Biology. 5: 172-4. PMID 9501904 DOI: 10.1038/nsb0398-172  1
1998 Cirillo LA, McPherson CE, Bossard P, Stevens K, Cherian S, Shim EY, Clark KL, Burley SK, Zaret KS. Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome. The Embo Journal. 17: 244-54. PMID 9427758 DOI: 10.1093/Emboj/17.1.244  1
1997 Ferré-D'Amaré AR, Burley SK. [10] Dynamic light scattering in evaluating crystallizability of macromolecules. Methods in Enzymology. 276: 157-166. PMID 27799091 DOI: 10.1016/S0076-6879(97)76056-7  1
1997 Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. X-ray studies of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Nucleic Acids Symposium Series. 8-11. PMID 9478191  1
1997 Patikoglou G, Burley SK. Eukaryotic transcription factor-DNA complexes Annual Review of Biophysics and Biomolecular Structure. 26: 289-325. PMID 9241421 DOI: 10.1146/Annurev.Biophys.26.1.289  1
1997 Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell. 89: 951-61. PMID 9200613 DOI: 10.1016/S0092-8674(00)80280-9  1
1997 Werner MH, Burley SK. Architectural transcription factors: proteins that remodel DNA. Cell. 88: 733-6. PMID 9118214 DOI: 10.1016/S0092-8674(00)81917-0  0.04
1997 Rhodes D, Burley SK. Protein-nucleic acid interactions. Current Opinion in Structural Biology. 7: 73-5. PMID 9032068 DOI: 10.1016/S0959-440X(97)80009-7  1
1997 Burley SK, Xie X, Clark KL, Shu F. Histone-like transcription factors in eukaryotes. Current Opinion in Structural Biology. 7: 94-102. PMID 9032065 DOI: 10.1016/S0959-440X(97)80012-7  1
1997 Nikolov DB, Burley SK. RNA polymerase II transcription initiation: A structural view Proceedings of the National Academy of Sciences of the United States of America. 94: 15-22. PMID 8990153 DOI: 10.1073/Pnas.94.1.15  1
1996 Houbaviy HB, Usheva A, Shenk T, Burley SK. Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator Proceedings of the National Academy of Sciences of the United States of America. 93: 13577-13582. PMID 8942976 DOI: 10.1073/Pnas.93.24.13577  1
1996 Bryant GO, Martel LS, Burley SK, Berk AJ. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes & Development. 10: 2491-504. PMID 8843200 DOI: 10.1101/Gad.10.19.2491  1
1996 Burley SK, Roeder RG. Biochemistry and structural biology of transcription factor IID (TFIID) Annual Review of Biochemistry. 65: 769-799. PMID 8811195 DOI: 10.1146/Annurev.Bi.65.070196.004005  1
1996 Burley SK. X-ray crystallographic studies of eukaryotic transcription initiation factors. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 351: 483-9. PMID 8735270 DOI: 10.1098/Rstb.1996.0046  0.01
1996 Burley SK. The TATA box binding protein. Current Opinion in Structural Biology. 6: 69-75. PMID 8696975 DOI: 10.1016/S0959-440X(96)80097-2  0.01
1996 Nikolov DB, Chen H, Halay ED, Hoffman A, Roeder RG, Burley SK. Crystal structure of a human TATA box-binding protein/TATA element complex. Proceedings of the National Academy of Sciences of the United States of America. 93: 4862-7. PMID 8643494 DOI: 10.1073/Pnas.93.10.4862  1
1996 Burley SK. Picking up the TAB. Nature. 381: 112-3. PMID 8610004 DOI: 10.1038/381112A0  0.01
1996 Hoffmann A, Chiang CM, Oelgeschläger T, Xie X, Burley SK, Nakatani Y, Roeder RG. A histone octamer-like structure within TFIID. Nature. 380: 356-9. PMID 8598932 DOI: 10.1038/380356A0  1
1996 Xie X, Kokubo T, Cohen SL, Mirza UA, Hoffmann A, Chait BT, Roeder RG, Nakatani Y, Burley SK. Structural similarity between TAFs and the heterotetrameric core of the histone octamer. Nature. 380: 316-22. PMID 8598927 DOI: 10.1038/380316A0  1
1996 Burley SK. DNA recognition by protein complexes during eukaryotic transcription initiation Acta Crystallographica Section a Foundations of Crystallography. 52: C175-C175. DOI: 10.1107/S010876739609229X  0.01
1996 Steingrímsson E, Nii A, Fisher DE, Ferré-D'Amaré AR, McCormick RJ, Russell LB, Burley SK, Ward JM, Jenkins NA, Copeland NG. The semidominant Mi(b) mutation identifies a role for the HLH domain in DNA binding in addition to its role in protein dimerization. The Embo Journal. 15: 6280-6289. DOI: 10.1002/J.1460-2075.1996.Tb01018.X  1
1995 Burley SK. Rel revealed: cocrystal structures of the NF-kappa B p50 homodimer. Chemistry & Biology. 2: 77-81. PMID 9383407 DOI: 10.1016/1074-5521(95)90279-1  0.01
1995 Kim JL, Burley SK. PCD/DCoH: more than a second molecular saddle. Structure (London, England : 1993). 3: 531-4. PMID 8590013 DOI: 10.1016/S0969-2126(01)00186-1  1
1995 Steingrímsson E, Moore KJ, Lamoreux ML, Ferré-D'Amaré AR, Burley SK, Zimring DC, Skow LC, Hodgkinson CA, Arnheiter H, Copeland NG. Molecular basis of mouse microphthalmia (mi) mutations helps explain their developmental and phenotypic consequences. Nature Genetics. 8: 256-63. PMID 7874168 DOI: 10.1038/Ng1194-256  1
1995 Nikolov DB, Chen H, Halay ED, Usheva AA, Hisatake K, Lee DK, Roeder RG, Burley SK. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature. 377: 119-28. PMID 7675079 DOI: 10.1038/377119A0  1
1995 Burley SK. Plus ça change, plus c'est la même chose. Nature Structural Biology. 1: 207-8. PMID 7656043 DOI: 10.1038/Nsb0494-207  0.01
1995 Burley SK. Forward to the fundamentals. Nature Structural Biology. 1: 8-10. PMID 7656011 DOI: 10.1038/Nsb0194-8  0.01
1995 Sha M, Ferre-D'Amare AR, Burley SK, Goss DJ. Anti-cooperative biphasic equilibrium binding of transcription factor upstream stimulatory factor to its cognate DNA monitored by protein fluorescence changes Journal of Biological Chemistry. 270: 19325-19329. PMID 7642609 DOI: 10.1074/Jbc.270.33.19325  1
1995 Halaas JL, Gajiwala KS, Maffei M, Cohen SL, Chait BT, Rabinowitz D, Lallone RL, Burley SK, Friedman JM. Weight-reducing effects of the plasma protein encoded by the obese gene. Science (New York, N.Y.). 269: 543-6. PMID 7624777 DOI: 10.1126/Science.7624777  1
1995 Cohen SL, Ferré-D'Amaré AR, Burley SK, Chait BT. Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry. Protein Science : a Publication of the Protein Society. 4: 1088-99. PMID 7549873 DOI: 10.1002/Pro.5560040607  1
1995 Canne LE, Ferre- D'Amare AR, Burley SK, Kent SBH. Total Chemical Synthesis of a Unique Transcription Factor-Related Protein: cMyc-Max Journal of the American Chemical Society. 117: 2998-3007. DOI: 10.1021/Ja00116A005  0.01
1994 Ferré-D'Amaré AR, Pognonec P, Roeder RG, Burley SK. Structure and function of the b/HLH/Z domain of USF. The Embo Journal. 13: 180-9. PMID 8306960 DOI: 10.2210/Pdb1An4/Pdb  1
1994 Ferré-D'Amaré AR, Burley SK. Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies. Structure (London, England : 1993). 2: 357-9. PMID 8081751 DOI: 10.1016/S0969-2126(00)00037-X  1
1994 Burley SK. p53: a cellular Achilles' heel revealed. Structure (London, England : 1993). 2: 789-92. PMID 7812712 DOI: 10.1016/S0969-2126(94)00079-4  0.01
1994 Kim JL, Burley SK. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature Structural Biology. 1: 638-53. PMID 7634103 DOI: 10.1038/Nsb0994-638  1
1994 Nikolov DB, Burley SK. 2.1 Å resolution refined structure of a tata box-binding protein (TBP) Nature Structural Biology. 1: 621-637. PMID 7634102 DOI: 10.1038/Nsb0994-621  1
1994 Burley SK. DNA-binding motifs from eukaryotic transcription factors Current Opinion in Structural Biology. 4: 3-11. DOI: 10.1016/S0959-440X(94)90053-1  0.01
1993 Ferré-D'Amaré AR, Prendergast GC, Ziff EB, Burley SK. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature. 363: 38-45. PMID 8479534 DOI: 10.1038/363038A0  1
1993 Kim H, Burley SK, Lipscomb WN. Re-refinement of the X-ray crystal structure of bovine lens leucine aminopeptidase complexed with bestatin. Journal of Molecular Biology. 230: 722-4. PMID 8478928 DOI: 10.1006/Jmbi.1993.1193  1
1993 Kim JL, Nikolov DB, Burley SK. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365: 520-7. PMID 8413605 DOI: 10.1038/365520A0  1
1993 Clark KL, Halay ED, Lai E, Burley SK. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5 Nature. 364: 412-420. PMID 8332212 DOI: 10.1038/364412A0  1
1993 Lai E, Clark KL, Burley SK, Darnell JE. Hepatocyte nuclear factor 3/fork head or "winged helix" proteins: a family of transcription factors of diverse biologic function. Proceedings of the National Academy of Sciences of the United States of America. 90: 10421-3. PMID 8248124 DOI: 10.1073/Pnas.90.22.10421  1
1993 Burley SK, Clark KL, Ferré-D'Amaré A, Kim JL, Nikolov DB. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harbor Symposia On Quantitative Biology. 58: 123-32. PMID 7956022 DOI: 10.1101/Sqb.1993.058.01.016  1
1992 Burley SK, David PR, Sweet RM, Taylor A, Lipscomb WN. Structure determination and refinement of bovine lens leucine aminopeptidase and its complex with bestatin. Journal of Molecular Biology. 224: 113-40. PMID 1548695 DOI: 10.1016/0022-2836(92)90580-D  1
1992 Nikolov DB, Hu SH, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua NH, Roeder RG, Burley SK. Crystal structure of TFIID TATA-box binding protein. Nature. 360: 40-6. PMID 1436073 DOI: 10.1038/360040A0  1
1992 Kuriyan J, Burley SK. DNA recognition, warts and all Nature. 359: 476. DOI: 10.1038/359476A0  1
1991 Kuriyan J, Osapay K, Burley SK, Brünger AT, Hendrickson WA, Karplus M. Exploration of disorder in protein structures by X-ray restrained molecular dynamics. Proteins. 10: 340-58. PMID 1946343 DOI: 10.1002/Prot.340100407  1
1991 Burley SK, David PR, Lipscomb WN. Leucine aminopeptidase: bestatin inhibition and a model for enzyme-catalyzed peptide hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 88: 6916-20. PMID 1871107 DOI: 10.1073/Pnas.88.16.6916  1
1991 David PR, Burley SK. Method for equilibrating protein crystals with heavy-atom reagents Journal of Applied Crystallography. 24: 1073-1074. DOI: 10.1107/S002188989100660X  1
1990 Burley SK, David PR, Taylor A, Lipscomb WN. Molecular structure of leucine aminopeptidase at 2.7-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 87: 6878-82. PMID 2395881 DOI: 10.1073/Pnas.87.17.6878  1
1989 Shoham G, Burley SK, Lipscomb WN. Structure of cyclo(-L-prolylglycyl-)2 trihydrate. Acta Crystallographica. Section C, Crystal Structure Communications. 45: 1944-8. PMID 2635609 DOI: 10.1107/S0108270189004257  1
1989 BURLEY S. Electrostatic interactions in aromatic oligopeptides contribute to protein stability Trends in Biotechnology. 7: 354-359. DOI: 10.1016/0167-7799(89)90036-X  0.01
1988 Burley SK, Petsko GA. Weakly polar interactions in proteins. Advances in Protein Chemistry. 39: 125-89. PMID 3072867 DOI: 10.1016/S0065-3233(08)60376-9  1
1987 Burley SK, Wang AH, Votano JR, Rich A. Antigelling and antisickling bisphenyl oligopeptides and peptide analogues have similar structural features. Biochemistry. 26: 5091-9. PMID 3663644 DOI: 10.1021/Bi00390A030  0.01
1987 Burley SK, Wang AHJ. Structure of an antisickling agent, N-phenylacetyl-L-phenylalanine Acta Crystallographica Section C Crystal Structure Communications. 43: 797-799. DOI: 10.1107/S0108270187094046  1
1987 Burley SK, Wang AHJ. Structure of N-benzoyl-5'-O-tert-butyldimethylsilyl-2'-deoxyadenosine monohydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 988-990. DOI: 10.1107/S0108270187093326  1
1987 Fujii S, Burley SK, Wang AHJ. Structure of an antigelling agent, L-phenylalanyl-glycyl-glycyl-D-phenylalanine trihydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 1008-1009. DOI: 10.1107/S0108270187093211  1
1987 Burley SK, Wang AHJ. Structure of an antisickling agent, L-phenylalanyl-3-aminopyridinium dichloride monohydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 1010-1011. DOI: 10.1107/S010827018709320X  1
1987 Wang AHJ, Burley SK. The structure of an antisickling agent, L-phenylalanine benzyl ester monochloride Acta Crystallographica Section C Crystal Structure Communications. 43: 1011-1012. DOI: 10.1107/S0108270187093193  1
1987 Burley SK. The structure of an antisickling agent, N-phenylacetyl-L-phenylalanine monohydrate Acta Crystallographica Section C Crystal Structure Communications. 43: 1316-1318. DOI: 10.1107/S0108270187092035  0.01
1987 Wang AHJ, Burley SK. The structure of an antigelling agent, L-lysyl-L-phenylalanyl-L-phenylalanine dibromide Acta Crystallographica Section C Crystal Structure Communications. 43: 1635-1636. DOI: 10.1107/S0108270187090784  1
1987 BURLEY SK, PETSKO GA. ChemInform Abstract: Dimerization Energetics of Benzene and Aromatic Amino Acid Side Chains. Cheminform. 18. DOI: 10.1002/chin.198717064  1
1986 Burley SK, Petsko GA. Amino-aromatic interactions in proteins. Febs Letters. 203: 139-43. PMID 3089835 DOI: 10.1016/0014-5793(86)80730-X  1
1986 Burley SK, Petsko GA. Dimerization energetics of benzene and aromatic amino acid side chains Journal of the American Chemical Society. 108: 7995-8001. DOI: 10.1021/Ja00285A019  1
1985 Burley SK, Petsko GA. Aromatic-aromatic interaction: a mechanism of protein structure stabilization. Science (New York, N.Y.). 229: 23-8. PMID 3892686 DOI: 10.1126/Science.3892686  1
1985 Nave C, Helliwell JR, Moore PR, Thompson AW, Worgan JS, Greenall RJ, Miller A, Burley SK, Bradshaw J, Pigram WJ, Fuller W, Siddons DP, Deutsch M, Tragear RT. Facilities for solution scattering and fibre diffraction at the Daresbury SRS Journal of Applied Crystallography. 18: 396-403. DOI: 10.1107/S0021889885010615  1
1984 Burley SK, Petsko GA, Ringe D. Effects of X-irradiation of single crystals of ribonuclease A Acta Crystallographica Section a Foundations of Crystallography. 40: C41-C41. DOI: 10.1107/S0108767384098548  1
1983 Burley SK, Murray RGE. Structure of the regular surface layer of Bacillus polymyxa Canadian Journal of Microbiology. 29: 775-780. DOI: 10.1139/M83-126  0.01
1982 Burley SK, Miller A, Harrap KA, Kelly DC. Structure of the Baculovirus nucleocapsid. Virology. 120: 433-40. PMID 18638731 DOI: 10.1016/0042-6822(82)90043-5  0.01
1982 Erickson JW, Tollin P, Richardson JF, Burley SK, Bancroft JB. The structure of an unusual ordered aggregate of papaya mosaic virus protein. Virology. 118: 241-5. PMID 18635132 DOI: 10.1016/0042-6822(82)90339-7  0.01
1982 Baumel RT, Burley SK, Freeman DF, Gammel JL, Nuttall J. The rise of a cylindrical bubble in an inviscid liquid Canadian Journal of Physics. 60: 999-1007. DOI: 10.1139/p82-138  1
1982 Fraser PA, Burley SK. A simple model of a Feshbach resonance European Journal of Physics. 3: 230-238. DOI: 10.1088/0143-0807/3/4/007  0.01
1981 Burley SK, John SO, Nuttall J. Vector Orthogonal Polynomials Siam Journal On Numerical Analysis. 18: 919-924. DOI: 10.1137/0718065  1
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