| Year |
Citation |
Score |
| 2018 |
Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley SK, Romo D, Almo SC, et al. Comparison of Alicyclobacillus acidocaldarius OSBS to its promiscuous NSAR/OSBS relatives. Biochemistry. PMID 29767960 DOI: 10.1021/acs.biochem.8b00088 |
0.56 |
|
| 2017 |
Hegde RP, Fedorov AA, Sauder JM, Burley SK, Almo SC, Ramagopal UA. The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets. Acta Crystallographica. Section F, Structural Biology Communications. 73: 184-195. PMID 28368276 DOI: 10.1107/S2053230X17002680 |
0.56 |
|
| 2016 |
Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, et al. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure (London, England : 1993). 24: 502-8. PMID 27050687 DOI: 10.1016/j.str.2016.02.017 |
1 |
|
| 2015 |
Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, et al. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure (London, England : 1993). PMID 26095030 DOI: 10.1016/j.str.2015.05.013 |
1 |
|
| 2015 |
Rose PW, Prli? A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Research. 43: D345-56. PMID 25428375 DOI: 10.1093/nar/gku1214 |
1 |
|
| 2014 |
Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallographica. Section D, Biological Crystallography. 70: 2780. PMID 25286863 DOI: 10.1107/S1399004714020513 |
1 |
|
| 2014 |
Manjasetty BA, Chance MR, Burley SK, Panjikar S, Almo SC. Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production. Biotechnology Reports (Amsterdam, Netherlands). 3: 73-85. PMID 25170437 DOI: 10.1016/j.btre.2014.06.009 |
1 |
|
| 2014 |
Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley SK, Chait BT, Almo SC, Rout MP, et al. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Molecular & Cellular Proteomics : McP. 13: 2911-26. PMID 25139911 DOI: 10.1074/mcp.M114.040915 |
1 |
|
| 2014 |
Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, et al. Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 53: 4727-38. PMID 24955762 DOI: 10.1021/bi500595c |
1 |
|
| 2014 |
Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, et al. Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. Proceedings of the National Academy of Sciences of the United States of America. 111: 8535-40. PMID 24872444 DOI: 10.1073/pnas.1318703111 |
1 |
|
| 2013 |
Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley SK, Almo SC, Glasner ME. Divergent evolution of ligand binding in the o-succinylbenzoate synthase family. Biochemistry. 52: 7512-21. PMID 24060347 DOI: 10.1021/bi401176d |
0.56 |
|
| 2013 |
Daughtry KD, Huang H, Malashkevich V, Patskovsky Y, Liu W, Ramagopal U, Sauder JM, Burley SK, Almo SC, Dunaway-Mariano D, Allen KN. Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry. 52: 5372-86. PMID 23848398 DOI: 10.1021/bi400659k |
1 |
|
| 2013 |
Almo SC, Garforth SJ, Hillerich BS, Love JD, Seidel RD, Burley SK. Protein production from the structural genomics perspective: achievements and future needs. Current Opinion in Structural Biology. 23: 335-44. PMID 23642905 DOI: 10.1016/j.sbi.2013.02.014 |
1 |
|
| 2013 |
Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, ... Burley SK, et al. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure (London, England : 1993). 21: 560-71. PMID 23499021 DOI: 10.1016/j.str.2013.02.005 |
1 |
|
| 2012 |
Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley SK, Tabita FR, Almo SC, Sweedler JS, Gerlt JA. 1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum Biochemistry. 51: 8324-8326. PMID 23035785 DOI: 10.1021/bi301215g |
1 |
|
| 2012 |
Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley SK, Almo SC, Mehta G, Macmillan AM. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases Rna. 18: 2020-2028. PMID 23006625 DOI: 10.1261/rna.033100.112 |
1 |
|
| 2012 |
Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, ... ... Burley SK, et al. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins. 80: 2110-6. PMID 22544723 DOI: 10.1002/prot.24102 |
1 |
|
| 2012 |
Wasserman SR, Koss JW, Sojitra ST, Morisco LL, Burley SK. Rapid-access, high-throughput synchrotron crystallography for drug discovery. Trends in Pharmacological Sciences. 33: 261-7. PMID 22521107 DOI: 10.1016/j.tips.2012.03.009 |
1 |
|
| 2012 |
Hobbs ME, Malashkevich V, Williams HJ, Xu C, Sauder JM, Burley SK, Almo SC, Raushel FM. Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry. 51: 3497-507. PMID 22475079 DOI: 10.1021/bi300307b |
1 |
|
| 2011 |
Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley SK, Swaminathan S, Lindahl PA, Raushel FM. The catalase activity of diiron adenine deaminase. Protein Science : a Publication of the Protein Society. 20: 2080-94. PMID 21998098 DOI: 10.1002/pro.748 |
1 |
|
| 2011 |
Suttisansanee U, Lau K, Lagishetty S, Rao KN, Swaminathan S, Sauder JM, Burley SK, Honek JF. Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum. The Journal of Biological Chemistry. 286: 38367-74. PMID 21914803 DOI: 10.1074/jbc.M111.251603 |
1 |
|
| 2011 |
Burley SK, Sonenberg N. Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD. Molecular Cell. 43: 163-5. PMID 21777807 DOI: 10.1016/j.molcel.2011.07.003 |
1 |
|
| 2011 |
Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (London, England : 1993). 19: 930-44. PMID 21742260 DOI: 10.1016/j.str.2011.05.002 |
1 |
|
| 2011 |
Goble AM, Zhang Z, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. 50: 6589-97. PMID 21710971 DOI: 10.1021/bi200868u |
1 |
|
| 2011 |
Shi W, Punta M, Bohon J, Sauder JM, D'Mello R, Sullivan M, Toomey J, Abel D, Lippi M, Passerini A, Frasconi P, Burley SK, Rost B, Chance MR. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Research. 21: 898-907. PMID 21482623 DOI: 10.1101/gr.115097.110 |
1 |
|
| 2011 |
Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, ... ... Burley SK, et al. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins. 79: 1672-7. PMID 21365675 DOI: 10.1002/prot.22973 |
1 |
|
| 2011 |
Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM. Enzymatic deamination of the epigenetic base N-6-methyladenine. Journal of the American Chemical Society. 133: 2080-3. PMID 21275375 DOI: 10.1021/ja110157u |
1 |
|
| 2011 |
Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM. Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. 50: 1917-27. PMID 21247091 DOI: 10.1021/bi101788n |
1 |
|
| 2011 |
Zhang Z, Zhou R, Sauder JM, Tonge PJ, Burley SK, Swaminathan S. Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila. Journal of Molecular Biology. 406: 313-24. PMID 21185305 DOI: 10.1016/j.jmb.2010.12.011 |
1 |
|
| 2011 |
Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, ... Burley SK, et al. ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research. 39: D465-74. PMID 21097780 DOI: 10.1093/nar/gkq1091 |
1 |
|
| 2010 |
Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley SK, Leigh JA, Gonen T. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure (London, England : 1993). 18: 1512-21. PMID 21070950 DOI: 10.1016/j.str.2010.08.014 |
1 |
|
| 2010 |
Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley SK, Rutter J. Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation. The Journal of Biological Chemistry. 285: 41034-43. PMID 20943661 DOI: 10.1074/jbc.M110.157594 |
1 |
|
| 2010 |
Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, ... ... Burley SK, et al. Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 78: 3056-62. PMID 20737437 DOI: 10.1002/prot.22829 |
1 |
|
| 2010 |
Gheyi T, Rodgers L, Romero R, Sauder JM, Burley SK. Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination. Journal of the American Society For Mass Spectrometry. 21: 1795-801. PMID 20685133 DOI: 10.1016/j.jasms.2010.06.015 |
1 |
|
| 2010 |
Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo SC, Raushel FM. Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry. 49: 6791-803. PMID 20604542 DOI: 10.1021/bi100897u |
1 |
|
| 2010 |
Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase . Biochemistry. 49: 4374-82. PMID 20415463 DOI: 10.1021/bi100252s |
1 |
|
| 2010 |
Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, ... ... Burley SK, et al. Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145. Proteins. 78: 1992-8. PMID 20310066 DOI: 10.1002/prot.22707 |
1 |
|
| 2010 |
Sampathkumar P, Ozyurt SA, Miller SA, Bain KT, Rutter ME, Gheyi T, Abrams B, Wang Y, Atwell S, Luz JG, Thompson DA, Wasserman SR, Emtage JS, Park EC, Rongo C, ... ... Burley SK, et al. Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1. Journal of Molecular Biology. 397: 883-92. PMID 20156452 DOI: 10.1016/j.jmb.2010.02.017 |
1 |
|
| 2010 |
Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. Safeguarding the integrity of protein archive. Nature. 463: 425. PMID 20110969 DOI: 10.1038/463425c |
1 |
|
| 2010 |
Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM. The hunt for 8-oxoguanine deaminase. Journal of the American Chemical Society. 132: 1762-3. PMID 20088583 DOI: 10.1021/ja909817d |
1 |
|
| 2010 |
Ragumani S, Sauder JM, Burley SK, Swaminathan S. Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis. Proteins. 78: 487-91. PMID 19787770 DOI: 10.1002/prot.22585 |
0.36 |
|
| 2009 |
Buchanan SG, Hendle J, Lee PS, Smith CR, Bounaud PY, Jessen KA, Tang CM, Huser NH, Felce JD, Froning KJ, Peterman MC, Aubol BE, Gessert SF, Sauder JM, Schwinn KD, ... ... Burley SK, et al. SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo. Molecular Cancer Therapeutics. 8: 3181-90. PMID 19934279 DOI: 10.1158/1535-7163.MCT-09-0477 |
1 |
|
| 2009 |
Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley SK, Almo SC, Jacobson MP, Gerlt JA. Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis . Biochemistry. 48: 11546-58. PMID 19883118 DOI: 10.1021/bi901731c |
1 |
|
| 2009 |
Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM. Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. 48: 4567-76. PMID 19358546 DOI: 10.1021/bi900453u |
1 |
|
| 2009 |
Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM. Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes. Biochemistry. 48: 3730-42. PMID 19281183 DOI: 10.1021/bi900111q |
1 |
|
| 2009 |
Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ. Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proceedings of the National Academy of Sciences of the United States of America. 106: 4154-9. PMID 19251641 DOI: 10.1073/pnas.0813360106 |
1 |
|
| 2009 |
Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA. Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Biochemistry. 48: 1445-53. PMID 19220063 DOI: 10.1021/bi802277h |
1 |
|
| 2009 |
Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, et al. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. Journal of Structural and Functional Genomics. 10: 107-25. PMID 19219566 DOI: 10.1007/s10969-008-9056-5 |
1 |
|
| 2009 |
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/j.str.2008.12.014 |
1 |
|
| 2008 |
Sauder MJ, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S, Burley SK. High throughput protein production and crystallization at NYSGXRC. Methods in Molecular Biology (Clifton, N.J.). 426: 561-75. PMID 18542890 DOI: 10.1007/978-1-60327-058-8_37 |
1 |
|
| 2008 |
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. A common catalytic mechanism for proteins of the HutI family. Biochemistry. 47: 5608-15. PMID 18442260 DOI: 10.1021/bi800180g |
1 |
|
| 2008 |
O'Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley SK, Deininger MW. SGX393 inhibits the CML mutant Bcr-AblT315I and preempts in vitro resistance when combined with nilotinib or dasatinib. Proceedings of the National Academy of Sciences of the United States of America. 105: 5507-12. PMID 18367669 DOI: 10.1073/pnas.0800587105 |
1 |
|
| 2008 |
Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, ... ... Burley SK, et al. Protein production and purification. Nature Methods. 5: 135-46. PMID 18235434 DOI: 10.1038/nmeth.f.202 |
1 |
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| 2008 |
Burley SK, Joachimiak A, Montelione GT, Wilson IA. Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers Structure. 16: 5-11. PMID 18184575 DOI: 10.1016/j.str.2007.12.002 |
1 |
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| 2007 |
Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, ... ... Burley SK, et al. Structural genomics of protein phosphatases. Journal of Structural and Functional Genomics. 8: 121-40. PMID 18058037 DOI: 10.1007/s10969-007-9036-1 |
1 |
|
| 2007 |
Sabini E, Hazra S, Konrad M, Burley SK, Lavie A. Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Research. 35: 186-92. PMID 17158155 DOI: 10.1093/nar/gkl1038 |
1 |
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| 2006 |
Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, et al. Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules Structure. 14: 1211-1217. PMID 16955948 DOI: 10.1016/j.str.2006.06.005 |
1 |
|
| 2006 |
Rao KN, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins. 65: 514-8. PMID 16909422 DOI: 10.1002/prot.21079 |
0.36 |
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| 2006 |
Kumaran D, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires". Proteins. 64: 851-62. PMID 16838328 DOI: 10.1002/prot.21039 |
0.36 |
|
| 2006 |
Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications. Protein Science : a Publication of the Protein Society. 15: 1735-44. PMID 16815921 DOI: 10.1110/ps.062096606 |
0.36 |
|
| 2006 |
Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S. Mechanism of action of a flavin-containing monooxygenase. Proceedings of the National Academy of Sciences of the United States of America. 103: 9832-7. PMID 16777962 DOI: 10.1073/pnas.0602398103 |
0.36 |
|
| 2006 |
Bellsolell L, Cho-Park PF, Poulin F, Sonenberg N, Burley SK. Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1. Structure (London, England : 1993). 14: 913-23. PMID 16698552 DOI: 10.1016/j.str.2006.03.012 |
1 |
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| 2006 |
Agarwal R, Bonanno JB, Burley SK, Swaminathan S. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. Acta Crystallographica. Section D, Biological Crystallography. 62: 383-91. PMID 16552139 DOI: 10.1107/S0907444906001600 |
0.36 |
|
| 2006 |
Seetharaman J, Rajashankar KR, Solorzano V, Kniewel R, Lima CD, Bonanno JB, Burley SK, Swaminathan S. Crystal structures of two putative phosphoheptose isomerases. Proteins. 63: 1092-6. PMID 16477602 DOI: 10.1002/prot.20908 |
1 |
|
| 2006 |
Seetharaman J, Kumaran D, Bonanno JB, Burley SK, Swaminathan S. Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis. Proteins. 63: 1087-91. PMID 16475182 DOI: 10.1002/prot.20924 |
0.36 |
|
| 2005 |
Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, ... ... Burley SK, et al. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. Journal of Structural and Functional Genomics. 6: 225-32. PMID 16211523 DOI: 10.1007/s10969-005-6827-0 |
1 |
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| 2005 |
Gao X, Bain K, Bonanno JB, Buchanan M, Henderson D, Lorimer D, Marsh C, Reynes JA, Sauder JM, Schwinn K, Thai C, Burley SK. High-throughput limited proteolysis/mass spectrometry for protein domain elucidation Journal of Structural and Functional Genomics. 6: 129-134. PMID 16211509 DOI: 10.1007/s10969-005-1918-5 |
1 |
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| 2005 |
Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley SK. Structural basis for autoinhibition and mutational activation of eukaryotic initiation factor 2α protein kinase GCN2 Journal of Biological Chemistry. 280: 29289-29299. PMID 15964839 DOI: 10.1074/jbc.M504096200 |
1 |
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| 2005 |
Sickmier EA, Brekasis D, Paranawithana S, Bonanno JB, Paget MS, Burley SK, Kielkopf CL. X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing. Structure (London, England : 1993). 13: 43-54. PMID 15642260 DOI: 10.1016/j.str.2004.10.012 |
1 |
|
| 2004 |
Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK. She2p is a novel RNA binding protein with a basic helical hairpin motif. Cell. 119: 491-502. PMID 15537539 DOI: 10.1016/j.cell.2004.10.018 |
1 |
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| 2004 |
Atwell S, Adams JM, Badger J, Buchanan MD, Feil IK, Froning KJ, Gao X, Hendle J, Keegan K, Leon BC, Müller-Dieckmann HJ, Nienaber VL, Noland BW, Post K, Rajashankar KR, ... ... Burley SK, et al. A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase. The Journal of Biological Chemistry. 279: 55827-32. PMID 15507431 DOI: 10.1074/jbc.M409792200 |
1 |
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| 2004 |
Roll-Mecak A, Alone P, Cao C, Dever TE, Burley SK. X-ray Structure of Translation Initiation Factor eIF2γ: Implications for tRNA and eIF2α binding Journal of Biological Chemistry. 279: 10634-10642. PMID 14688270 DOI: 10.1074/jbc.M310418200 |
1 |
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| 2004 |
Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM. Structural bases for CRMP function in plexin-dependent semaphorin3A signaling. The Embo Journal. 23: 9-22. PMID 14685275 DOI: 10.1038/sj.emboj.7600021 |
1 |
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| 2004 |
Lewis HA, Buchanan SG, Burley SK, Conners K, Dickey M, Dorwart M, Fowler R, Gao X, Guggino WB, Hendrickson WA, Hunt JF, Kearins MC, Lorimer D, Maloney PC, Post KW, et al. Structure of nucleotide-binding domain 1 of the cystic fibrosis transmembrane conductance regulator. The Embo Journal. 23: 282-93. PMID 14685259 DOI: 10.1038/sj.emboj.7600040 |
1 |
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| 2003 |
Burley SK, Bonanno JB. Structural genomics. Methods of Biochemical Analysis. 44: 591-612. PMID 12647406 |
0.36 |
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| 2003 |
Trester-Zedlitz M, Kamada K, Burley SK, Fenyö D, Chait BT, Muir TW. A modular cross-linking approach for exploring protein interactions. Journal of the American Chemical Society. 125: 2416-25. PMID 12603129 DOI: 10.1021/ja026917a |
1 |
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| 2003 |
Zuberek J, Wyslouch-Cieszynska A, Niedzwiecka A, Dadlez M, Stepinski J, Augustyniak W, Gingras AC, Zhang Z, Burley SK, Sonenberg N, Stolarski R, Darzynkiewicz E. Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein. Rna (New York, N.Y.). 9: 52-61. PMID 12554876 DOI: 10.1261/rna.2133403 |
1 |
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| 2003 |
Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley SK. X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus. Proteins. 50: 170-3. PMID 12471609 DOI: 10.1002/prot.10272 |
0.36 |
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| 2002 |
Ray SS, Bonanno JB, Rajashankar KR, Pinho MG, He G, De Lencastre H, Tomasz A, Burley SK. Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (London, England : 1993). 10: 1499-508. PMID 12429091 |
0.36 |
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| 2002 |
Kielkopf CL, Burley SK. X-ray structures of threonine aldolase complexes: structural basis of substrate recognition. Biochemistry. 41: 11711-20. PMID 12269813 DOI: 10.1021/bi020393+ |
1 |
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| 2002 |
Burley SK, Bonanno JB. Structuring the universe of proteins. Annual Review of Genomics and Human Genetics. 3: 243-62. PMID 12194989 DOI: 10.1146/annurev.genom.3.022502.103227 |
0.36 |
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| 2002 |
Burley SK, Bonanno JB. Structural genomics of proteins from conserved biochemical pathways and processes. Current Opinion in Structural Biology. 12: 383-91. PMID 12127459 |
0.36 |
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| 2002 |
Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK. X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Proteins. 48: 431-6. PMID 12112709 DOI: 10.1002/prot.10151 |
1 |
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| 2002 |
Groft CM, Burley SK. Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Molecular Cell. 9: 1273-83. PMID 12086624 DOI: 10.1016/S1097-2765(02)00555-5 |
1 |
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| 2002 |
Romanowski MJ, Soccio RE, Breslow JL, Burley SK. Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain Proceedings of the National Academy of Sciences of the United States of America. 99: 6949-6954. PMID 12011453 DOI: 10.1073/pnas.052140699 |
1 |
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| 2002 |
Soccio RE, Adams RM, Romanowski MJ, Sehayek E, Burley SK, Breslow JL. The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. Proceedings of the National Academy of Sciences of the United States of America. 99: 6943-8. PMID 12011452 DOI: 10.1073/pnas.052143799 |
1 |
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| 2002 |
Romanowski MJ, Bonanno JB, Burley SK. Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily Proteins: Structure, Function and Genetics. 47: 568-571. PMID 12001237 DOI: 10.1002/prot.10118 |
1 |
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| 2002 |
Romanowski MJ, Bonanno JB, Burley SK. Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold Proteins: Structure, Function and Genetics. 47: 563-567. PMID 12001236 DOI: 10.1002/prot.10121 |
1 |
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| 2002 |
Romanowski MJ, Burley SK. Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam Proteins: Structure, Function and Genetics. 47: 558-562. PMID 12001235 DOI: 10.1002/prot.10099 |
1 |
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| 2002 |
Romanowski MJ, Gibney SA, Burley SK. Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17 Proteins: Structure, Function and Genetics. 47: 403-407. PMID 11948793 DOI: 10.1002/prot.10102 |
1 |
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| 2002 |
Wolf E, De Angelis J, Khalil EM, Cole PA, Burley SK. X-ray crystallographic studies of serotonin N-acetyltransferase catalysis and inhibition Journal of Molecular Biology. 317: 215-224. PMID 11902838 DOI: 10.1006/jmbi.2001.5371 |
1 |
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| 2002 |
Deo RC, Groft CM, Rajashankar KR, Burley SK. Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer. Cell. 108: 71-81. PMID 11792322 DOI: 10.1016/S0092-8674(01)00632-8 |
1 |
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| 2001 |
Roll-Mecak A, Shin BS, Dever TE, Burley SK. Engaging the ribosome: Universal IFs of translation Trends in Biochemical Sciences. 26: 705-709. PMID 11738593 DOI: 10.1016/S0968-0004(01)02024-2 |
1 |
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| 2001 |
Bonanno JB, Edo C, Eswar N, Pieper U, Romanowski MJ, Ilyin V, Gerchman SE, Kycia H, Studier FW, Sali A, Burley SK. Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 98: 12896-901. PMID 11698677 DOI: 10.1073/pnas.181466998 |
1 |
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| 2001 |
Kielkopf CL, Rodionova NA, Green MR, Burley SK. A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell. 106: 595-605. PMID 11551507 DOI: 10.1016/S0092-8674(01)00480-9 |
1 |
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| 2001 |
Deo RC, Sonenberg N, Burley SK. X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 98: 4414-9. PMID 11287654 DOI: 10.1073/pnas.071552198 |
1 |
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| 2001 |
Kamada K, De Angelis J, Roeder RG, Burley SK. Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF Proceedings of the National Academy of Sciences of the United States of America. 98: 3115-3120. PMID 11248041 DOI: 10.1073/pnas.051631098 |
1 |
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| 2000 |
Roll-Mecak A, Cao C, Dever TE, Burley SK. X-ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding Cell. 103: 781-792. PMID 11114334 |
1 |
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| 2000 |
Groft CM, Beckmann R, Sali A, Burley SK. Crystal structures of ribosome anti-association factor IF6. Nature Structural Biology. 7: 1156-64. PMID 11101899 DOI: 10.1038/82017 |
1 |
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| 1999 |
Patikoglou GA, Kim JL, Sun L, Yang SH, Kodadek T, Burley SK. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & Development. 13: 3217-30. PMID 10617571 DOI: 10.1101/gad.13.24.3217 |
1 |
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| 1999 |
Deo RC, Bonanno JB, Sonenberg N, Burley SK. Recognition of polyadenylate RNA by the poly(A)-binding protein Cell. 98: 835-845. PMID 10499800 DOI: 10.1016/S0092-8674(00)81517-2 |
1 |
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| 1999 |
Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G. Molecular Cell. 3: 707-16. PMID 10394359 DOI: 10.1016/S1097-2765(01)80003-4 |
1 |
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| 1998 |
Burley SK, Roeder RG. TATA box mimicry by TFIID: Autoinhibition of pol II transcription Cell. 94: 551-553. PMID 9741619 DOI: 10.1016/S0092-8674(00)81596-2 |
1 |
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| 1997 |
Patikoglou G, Burley SK. Eukaryotic transcription factor-DNA complexes Annual Review of Biophysics and Biomolecular Structure. 26: 289-325. PMID 9241421 DOI: 10.1146/annurev.biophys.26.1.289 |
1 |
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| 1997 |
Burley SK, Xie X, Clark KL, Shu F. Histone-like transcription factors in eukaryotes. Current Opinion in Structural Biology. 7: 94-102. PMID 9032065 DOI: 10.1016/S0959-440X(97)80012-7 |
1 |
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| 1997 |
Nikolov DB, Burley SK. RNA polymerase II transcription initiation: A structural view Proceedings of the National Academy of Sciences of the United States of America. 94: 15-22. PMID 8990153 DOI: 10.1073/pnas.94.1.15 |
1 |
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| 1996 |
Houbaviy HB, Usheva A, Shenk T, Burley SK. Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator Proceedings of the National Academy of Sciences of the United States of America. 93: 13577-13582. PMID 8942976 DOI: 10.1073/pnas.93.24.13577 |
1 |
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| 1996 |
Burley SK, Roeder RG. Biochemistry and structural biology of transcription factor IID (TFIID) Annual Review of Biochemistry. 65: 769-799. PMID 8811195 |
1 |
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| 1994 |
Nikolov DB, Burley SK. 2.1 Å resolution refined structure of a tata box-binding protein (TBP) Nature Structural Biology. 1: 621-637. PMID 7634102 DOI: 10.1038/nsb0994-621 |
1 |
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| 1993 |
Ferré-D'Amaré AR, Prendergast GC, Ziff EB, Burley SK. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature. 363: 38-45. PMID 8479534 DOI: 10.1038/363038a0 |
1 |
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| 1993 |
Kim H, Burley SK, Lipscomb WN. Re-refinement of the X-ray crystal structure of bovine lens leucine aminopeptidase complexed with bestatin. Journal of Molecular Biology. 230: 722-4. PMID 8478928 DOI: 10.1006/jmbi.1993.1193 |
1 |
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| 1993 |
Kim JL, Nikolov DB, Burley SK. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365: 520-7. PMID 8413605 DOI: 10.1038/365520a0 |
1 |
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| 1993 |
Clark KL, Halay ED, Lai E, Burley SK. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5 Nature. 364: 412-420. PMID 8332212 |
1 |
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| 1993 |
Burley SK, Clark KL, Ferré-D'Amaré A, Kim JL, Nikolov DB. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harbor Symposia On Quantitative Biology. 58: 123-32. PMID 7956022 |
1 |
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| 1992 |
Burley SK, David PR, Sweet RM, Taylor A, Lipscomb WN. Structure determination and refinement of bovine lens leucine aminopeptidase and its complex with bestatin. Journal of Molecular Biology. 224: 113-40. PMID 1548695 DOI: 10.1016/0022-2836(92)90580-D |
1 |
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| 1991 |
Kuriyan J, Osapay K, Burley SK, Brünger AT, Hendrickson WA, Karplus M. Exploration of disorder in protein structures by X-ray restrained molecular dynamics. Proteins. 10: 340-58. PMID 1946343 DOI: 10.1002/prot.340100407 |
1 |
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| 1991 |
Burley SK, David PR, Lipscomb WN. Leucine aminopeptidase: bestatin inhibition and a model for enzyme-catalyzed peptide hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 88: 6916-20. PMID 1871107 |
1 |
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| 1990 |
Burley SK, David PR, Taylor A, Lipscomb WN. Molecular structure of leucine aminopeptidase at 2.7-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 87: 6878-82. PMID 2395881 |
1 |
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| 1989 |
Shoham G, Burley SK, Lipscomb WN. Structure of cyclo(-L-prolylglycyl-)2 trihydrate. Acta Crystallographica. Section C, Crystal Structure Communications. 45: 1944-8. PMID 2635609 DOI: 10.1107/S0108270189004257 |
1 |
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| 1988 |
Burley SK, Petsko GA. Weakly polar interactions in proteins. Advances in Protein Chemistry. 39: 125-89. PMID 3072867 |
1 |
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| 1986 |
Burley SK, Petsko GA. Amino-aromatic interactions in proteins. Febs Letters. 203: 139-43. PMID 3089835 |
1 |
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| 1985 |
Burley SK, Petsko GA. Aromatic-aromatic interaction: a mechanism of protein structure stabilization. Science (New York, N.Y.). 229: 23-8. PMID 3892686 |
1 |
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| 1982 |
Burley SK, Miller A, Harrap KA, Kelly DC. Structure of the Baculovirus nucleocapsid. Virology. 120: 433-40. PMID 18638731 |
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