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Eric D. Siggia - Publications

Affiliations: 
Rockefeller University, New York, NY, United States 
Website:
https://www.rockefeller.edu/our-scientists/heads-of-laboratories/899-eric-d-siggia/
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58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Karzbrun E, Khankhel AH, Megale HC, Glasauer SMK, Wyle Y, Britton G, Warmflash A, Kosik KS, Siggia ED, Shraiman BI, Streichan SJ. Human neural tube morphogenesis in vitro by geometric constraints. Nature. 599: 268-272. PMID 34707290 DOI: 10.1038/s41586-021-04026-9  0.504
2013 François P, Voisinne G, Siggia ED, Altan-Bonnet G, Vergassola M. Phenotypic model for early T-cell activation displaying sensitivity, specificity, and antagonism. Proceedings of the National Academy of Sciences of the United States of America. 110: E888-97. PMID 23431198 DOI: 10.1073/Pnas.1300752110  0.596
2011 Charvin G, Oikonomou C, Siggia ED, Cross FR. Correction: Origin of Irreversibility of Cell Cycle Start in Budding Yeast Plos Biology. 9. DOI: 10.1371/Annotation/90916531-1B34-4Eb5-92A9-A7F8C5D72318  0.514
2010 Bai L, Charvin G, Siggia ED, Cross FR. Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle. Developmental Cell. 18: 544-55. PMID 20412770 DOI: 10.1016/J.Devcel.2010.02.007  0.549
2010 Charvin G, Oikonomou C, Siggia ED, Cross FR. Origin of irreversibility of cell cycle start in budding yeast. Plos Biology. 8: e1000284. PMID 20087409 DOI: 10.1371/Journal.Pbio.1000284  0.557
2009 Morozov AV, Fortney K, Gaykalova DA, Studitsky VM, Widom J, Siggia ED. Using DNA mechanics to predict in vitro nucleosome positions and formation energies. Nucleic Acids Research. 37: 4707-22. PMID 19509309 DOI: 10.1093/Nar/Gkp475  0.513
2009 Charvin G, Cross FR, Siggia ED. Forced periodic expression of G1 cyclins phase-locks the budding yeast cell cycle. Proceedings of the National Academy of Sciences of the United States of America. 106: 6632-7. PMID 19346485 DOI: 10.1073/Pnas.0809227106  0.539
2009 Gertz J, Siggia ED, Cohen BA. Analysis of combinatorial cis-regulation in synthetic and genomic promoters. Nature. 457: 215-8. PMID 19029883 DOI: 10.1038/Nature07521  0.302
2009 Bai L, Charvin G, Siggia E, Cross F. Nucleosome Depleted Region In Promoter Improves Robustness In Gene Expression Biophysical Journal. 96: 567a. DOI: 10.1016/J.Bpj.2008.12.3715  0.551
2008 Siggia ED. Developmental regulatory bits. Molecular Systems Biology. 4: 226. PMID 18985026 DOI: 10.1038/Msb.2008.64  0.3
2008 Skotheim JM, Di Talia S, Siggia ED, Cross FR. Positive feedback of G1 cyclins ensures coherent cell cycle entry. Nature. 454: 291-6. PMID 18633409 DOI: 10.1038/nature07118  0.689
2008 Charvin G, Cross FR, Siggia ED. A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells. Plos One. 3: e1468. PMID 18213377 DOI: 10.1371/Journal.Pone.0001468  0.529
2007 Di Talia S, Skotheim JM, Bean JM, Siggia ED, Cross FR. The effects of molecular noise and size control on variability in the budding yeast cell cycle. Nature. 448: 947-51. PMID 17713537 DOI: 10.1038/Nature06072  0.697
2007 Morozov AV, Siggia ED. Connecting protein structure with predictions of regulatory sites. Proceedings of the National Academy of Sciences of the United States of America. 104: 7068-73. PMID 17438293 DOI: 10.1073/Pnas.0701356104  0.521
2007 Di Talia S, Skotheim JM, Bean JM, Siggia ED, Cross FR. The effects of molecular noise and size control on variability in the budding yeast cell cycle (Nature (2007) 448, (947-951)) Nature. 450: 1272. DOI: 10.1038/nature06511  0.456
2006 Sinha S, Liang Y, Siggia E. Stubb: a program for discovery and analysis of cis-regulatory modules. Nucleic Acids Research. 34: W555-9. PMID 16845069 DOI: 10.1093/Nar/Gkl224  0.486
2006 Ligr M, Siddharthan R, Cross FR, Siggia ED. Gene expression from random libraries of yeast promoters. Genetics. 172: 2113-22. PMID 16415362 DOI: 10.1534/Genetics.105.052688  0.538
2006 Bean JM, Siggia ED, Cross FR. Coherence and timing of cell cycle start examined at single-cell resolution. Molecular Cell. 21: 3-14. PMID 16387649 DOI: 10.1016/J.Molcel.2005.10.035  0.556
2005 Morozov AV, Havranek JJ, Baker D, Siggia ED. Protein-DNA binding specificity predictions with structural models. Nucleic Acids Research. 33: 5781-98. PMID 16246914 DOI: 10.1093/Nar/Gki875  0.568
2005 Cross FR, Siggia ED. Mode locking the cell cycle. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 021910. PMID 16196607 DOI: 10.1103/Physreve.72.021910  0.523
2005 Cross FR, Siggia ED. Shake it, don't break it: positive feedback and the evolution of oscillator design. Developmental Cell. 9: 309-10. PMID 16139219 DOI: 10.1016/J.Devcel.2005.08.006  0.514
2005 Bean JM, Siggia ED, Cross FR. High functional overlap between MluI cell-cycle box binding factor and Swi4/6 cell-cycle box binding factor in the G1/S transcriptional program in Saccharomyces cerevisiae. Genetics. 171: 49-61. PMID 15965243 DOI: 10.1534/Genetics.105.044560  0.546
2005 Sinha S, Siggia ED. Sequence turnover and tandem repeats in cis-regulatory modules in drosophila. Molecular Biology and Evolution. 22: 874-85. PMID 15659554 DOI: 10.1093/Molbev/Msi090  0.495
2004 Sinha S, Schroeder MD, Unnerstall U, Gaul U, Siggia ED. Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila. Bmc Bioinformatics. 5: 129. PMID 15357878 DOI: 10.1186/1471-2105-5-129  0.482
2003 Sinha S, van Nimwegen E, Siggia ED. A probabilistic method to detect regulatory modules. Bioinformatics (Oxford, England). 19: i292-301. PMID 12855472 DOI: 10.1093/Bioinformatics/Btg1040  0.47
2001 Bussemaker HJ, Li H, Siggia ED. Regulatory element detection using correlation with expression. Nature Genetics. 27: 167-71. PMID 11175784 DOI: 10.1038/84792  0.599
2000 Bussemaker HJ, Li H, Siggia ED. Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis. Proceedings of the National Academy of Sciences of the United States of America. 97: 10096-100. PMID 10944202 DOI: 10.1073/Pnas.180265397  0.6
2000 Shraiman BI, Siggia ED. Scalar turbulence Nature. 405: 639-46. PMID 10864314 DOI: 10.1038/35015000  0.528
1999 Pumir A, Shraiman BI, Siggia ED. Turbulent mixing of a passive scalar Physica a: Statistical Mechanics and Its Applications. 263: 95-103. DOI: 10.1016/S0378-4371(98)00532-9  0.594
1998 Mydlarski L, Pumir A, Shraiman BI, Siggia ED, Warhaft Z. Structures and Multipoint Correlators for Turbulent Advection: Predictions and Experiments Physical Review Letters. 81: 4373-4376. DOI: 10.1103/Physrevlett.81.4373  0.593
1998 Shraiman BI, Siggia ED. Anomalous scaling for a passive scalar near the Batchelor limit Physical Review E. 57: 2965-2977. DOI: 10.1103/Physreve.57.2965  0.588
1997 Pumir A, Shraiman BI, Siggia ED. Perturbation theory for the δ-correlated model of passive scalar advection near the Batchelor limit Physical Review E. 55: R1263-R1266. DOI: 10.1103/Physreve.55.R1263  0.565
1996 Shraiman BI, Siggia ED. Symmetry and Scaling of Turbulent Mixing. Physical Review Letters. 77: 2463-2466. PMID 10061960 DOI: 10.1103/Physrevlett.77.2463  0.6
1996 Shraiman BI, Siggia ED. High Rayleigh number convection and passive scalar mixing Physica D: Nonlinear Phenomena. 97: 286-290. DOI: 10.1016/0167-2789(96)00075-9  0.576
1994 Shraiman BI, Siggia ED. Lagrangian path integrals and fluctuations in random flow. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 49: 2912-2927. PMID 9961557 DOI: 10.1103/Physreve.49.2912  0.564
1992 Shraiman BI, Siggia ED. Excitation spectrum of the spiral state of a doped antiferromagnet. Physical Review. B, Condensed Matter. 46: 8305-8311. PMID 10002592 DOI: 10.1103/Physrevb.46.8305  0.582
1992 Pumir A, Shraiman BI, Siggia ED. Vortex morphology and Kelvin's theorem. Physical Review. A. 45: R5351-R5354. PMID 9907727 DOI: 10.1103/Physreva.45.R5351  0.571
1991 Pumir A, Shraiman BI, Siggia ED. Exponential tails and random advection. Physical Review Letters. 66: 2984-2987. PMID 10043669 DOI: 10.1103/Physrevlett.66.2984  0.54
1990 Shraiman BI, Siggia ED. Mobile vacancy in a quantum antiferromagnet: Effective Hamiltonian. Physical Review. B, Condensed Matter. 42: 2485-2500. PMID 9995698 DOI: 10.1103/Physrevb.42.2485  0.549
1990 Elser V, Huse DA, Shraiman BI, Siggia ED. Ground state of a mobile vacancy in a quantum antiferromagnet: Small-cluster study. Physical Review. B, Condensed Matter. 41: 6715-6723. PMID 9992924 DOI: 10.1103/Physrevb.41.6715  0.558
1990 Frenkel DM, Gooding RJ, Shraiman BI, Siggia ED. Ground-state properties of a single oxygen hole in a CuO2 plane. Physical Review. B, Condensed Matter. 41: 350-370. PMID 9992772 DOI: 10.1103/Physrevb.41.350  0.569
1990 Shraiman BI, Siggia ED. Heat transport in high-Rayleigh-number convection. Physical Review. A. 42: 3650-3653. PMID 9904456 DOI: 10.1103/Physreva.42.3650  0.561
1989 Shraiman BI, Siggia ED. Spiral phase of a doped quantum antiferromagnet. Physical Review Letters. 62: 1564-1567. PMID 10039706 DOI: 10.1103/Physrevlett.62.1564  0.585
1989 Shraiman BI, Siggia ED. Mean-field theory for vacancies in a quantum antiferromagnet. Physical Review. B, Condensed Matter. 40: 9162-9166. PMID 9991405 DOI: 10.1103/Physrevb.40.9162  0.579
1989 Shraiman BI, Siggia ED. SPIRAL PHASES OF DOPED ANTIFERROMAGNETS International Journal of Modern Physics B. 3: 1905-1911. DOI: 10.1142/S0217979289001238  0.536
1988 Shraiman BI, Siggia ED. Mobile vacancies in a quantum Heisenberg antiferromagnet. Physical Review Letters. 61: 467-470. PMID 10039340 DOI: 10.1103/Physrevlett.61.467  0.573
1988 Shraiman BI, Siggia ED. Two-particle excitations in antiferromagnetic insulators. Physical Review Letters. 60: 740-743. PMID 10038634 DOI: 10.1103/Physrevlett.60.740  0.563
1982 Ruckenstein AE, Siggia ED. Surface magnetic relaxation rates in spin-polarized hydrogen Physical Review B. 25: 6031-6034. DOI: 10.1103/Physrevb.25.6031  0.625
1981 Siggia ED, Ruckenstein AE. Hydrodynamics of the condensed phases of spin-polarized atomic hydrogen Physical Review B. 23: 3580-3583. DOI: 10.1103/Physrevb.23.3580  0.639
1981 Siggia ED. Numerical study of small-scale intermittency in three-dimensional turbulence Journal of Fluid Mechanics. 107: 375. DOI: 10.1017/S002211208100181X  0.309
1981 Aref H, Siggia ED. Evolution and breakdown of a vortex street in two dimensions Journal of Fluid Mechanics. 109: 435-463. DOI: 10.1017/S0022112081001158  0.609
1981 Ruckenstein AE, Siggia E. Longitudinal and transverse relaxation in spin polarized hydrogen Physica B+C. 107: 519. DOI: 10.1016/0378-4363(81)90562-3  0.624
1980 Siggia ED, Aref H. SCALIAG AND STRUCTURES IN FULLY TURBUI-ENT FLOWS Annals of the New York Academy of Sciences. 357: 368-376. DOI: 10.1111/J.1749-6632.1980.Tb29704.X  0.566
1980 Siggia ED, Ruckenstein AE. BOSE CONDENSATION IN SPIN POLARIZED ATOMIC HYDROGEN Le Journal De Physique Colloques. 41: C7-15-C7-18. DOI: 10.1051/jphyscol:1980703  0.584
1980 Siggia ED, Ruckenstein AE. Bose Condensation in Spin-Polarized Atomic Hydrogen Physical Review Letters. 44: 1423-1426. DOI: 10.1051/Jphyscol:1980703  0.638
1980 Aref H, Siggia ED. Vortex dynamics of the two-dimensional turbulent shear layer Journal of Fluid Mechanics. 100: 705-737. DOI: 10.1017/S0022112080001371  0.598
1976 Hohenberg PC, Siggia ED, Halperin BI. Density-correlation function for liquid helium near Tλ in the symmetric planar-spin model Physical Review B. 14: 2865-2874. DOI: 10.1103/Physrevb.14.2865  0.305
1973 Martin PC, Siggia ED, Rose HA. Statistical dynamics of classical systems Physical Review A. 8: 423-437. DOI: 10.1103/Physreva.8.423  0.398
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