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John J. Hopfield - Publications

Affiliations: 
1961-1964 Physics University of California, Berkeley, Berkeley, CA, United States 
 1964-1980 Physics Princeton University, Princeton, NJ 
 1973-1989 Biophysics Research Bell Laboratories, Murray Hill, NJ, United States 
 1980-1997 Chemistry and Biology California Institute of Technology, Pasadena, CA 
 1997- Molecular Biology Princeton University, Princeton, NJ 
Area:
Modelling
Website:
http://genomics.princeton.edu/hopfield/
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93 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Krotov D, Hopfield J. Dense Associative Memory Is Robust to Adversarial Inputs. Neural Computation. 1-17. PMID 30314425 DOI: 10.1162/Neco_A_01143  0.31
2015 Hopfield JJ. Understanding Emergent Dynamics: Using a Collective Activity Coordinate of a Neural Network to Recognize Time-Varying Patterns. Neural Computation. 27: 2011-38. PMID 26313598 DOI: 10.1162/NECO_a_00768  0.365
2014 Hopfield JJ. Two cultures? Experiences at the physics-biology interface. Physical Biology. 11: 053002. PMID 25292216 DOI: 10.1088/1478-3975/11/5/053002  0.317
2013 Ponulak F, Hopfield JJ. Rapid, parallel path planning by propagating wavefronts of spiking neural activity. Frontiers in Computational Neuroscience. 7: 98. PMID 23882213 DOI: 10.3389/fncom.2013.00098  0.394
2010 Hopfield JJ. Neurodynamics of mental exploration. Proceedings of the National Academy of Sciences of the United States of America. 107: 1648-53. PMID 20080534 DOI: 10.1073/pnas.0913991107  0.365
2008 Markowitz DA, Collman F, Brody CD, Hopfield JJ, Tank DW. Rate-specific synchrony: using noisy oscillations to detect equally active neurons. Proceedings of the National Academy of Sciences of the United States of America. 105: 8422-7. PMID 18550830 DOI: 10.1073/Pnas.0803183105  0.747
2008 Hopfield JJ. Searching for memories, Sudoku, implicit check bits, and the iterative use of not-always-correct rapid neural computation. Neural Computation. 20: 1119-64. PMID 18199026 DOI: 10.1162/neco.2007.09-06-345  0.408
2005 Marinov CA, Hopfield JJ. Stable computational dynamics for a class of circuits with O(N) interconnections capable of KWTA and rank extractions Ieee Transactions On Circuits and Systems I: Regular Papers. 52: 949-959. DOI: 10.1109/TCSI.2005.846662  0.304
2005 Kim J, Hopfield JJ, Winfree E. Neural network computation by in vitro transcriptional circuits Advances in Neural Information Processing Systems.  0.577
2004 Hopfield JJ. Encoding for computation: recognizing brief dynamical patterns by exploiting effects of weak rhythms on action-potential timing. Proceedings of the National Academy of Sciences of the United States of America. 101: 6255-60. PMID 15075391 DOI: 10.1073/pnas.0401125101  0.428
2004 Hopfield JJ, Brody CD. Learning rules and network repair in spike-timing-based computation networks. Proceedings of the National Academy of Sciences of the United States of America. 101: 337-42. PMID 14694191 DOI: 10.1073/pnas.2536316100  0.641
2003 Neimark MA, Andermann ML, Hopfield JJ, Moore CI. Vibrissa resonance as a transduction mechanism for tactile encoding. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 6499-509. PMID 12878691 DOI: 10.1523/Jneurosci.23-16-06499.2003  0.351
2003 Hopfield JJ, Brody CD. Separating objects and 'neural' computation. Comptes Rendus Biologies. 326: 219-22. PMID 12754940 DOI: 10.1016/S1631-0691(03)00017-9  0.638
2003 Brody CD, Hopfield JJ. Simple networks for spike-timing-based computation, with application to olfactory processing. Neuron. 37: 843-52. PMID 12628174 DOI: 10.1016/S0896-6273(03)00120-X  0.642
2002 Gelperin A, Hopfield JJ. Electronic and computational olfaction Acs Symposium Series. 825: 289-317.  0.509
2001 Hopfield JJ, Brody CD. What is a moment? Transient synchrony as a collective mechanism for spatiotemporal integration. Proceedings of the National Academy of Sciences of the United States of America. 98: 1282-7. PMID 11158631 DOI: 10.1073/pnas.031567098  0.653
2001 Brody CD, Hopfield JJ. Transient synchrony and the integration of spectrotemporal information Proceedings of Spie - the International Society For Optical Engineering. 4479: 1-3. DOI: 10.1117/12.448326  0.521
2000 Hopfield JJ, Brody CD. What is a moment? "Cortical" sensory integration over a brief interval. Proceedings of the National Academy of Sciences of the United States of America. 97: 13919-24. PMID 11095747 DOI: 10.1073/pnas.250483697  0.665
2000 Hopfield JJ. On theorists and data in computational neuroscience Nature Neuroscience. 3: 1204. DOI: 10.1038/81484  0.306
1999 Hartwell LH, Hopfield JJ, Leibler S, Murray AW. From molecular to modular cell biology. Nature. 402: C47-52. PMID 10591225 DOI: 10.1038/35011540  0.699
1999 Hopfield JJ. Odor space and olfactory processing: collective algorithms and neural implementation. Proceedings of the National Academy of Sciences of the United States of America. 96: 12506-11. PMID 10535952 DOI: 10.1073/pnas.96.22.12506  0.379
1999 Hopfield JJ. Brain, neural networks, and computation Reviews of Modern Physics. 71: S431-S437. DOI: 10.1007/978-1-4612-1512-7_47  0.326
1998 Petersen CC, Malenka RC, Nicoll RA, Hopfield JJ. All-or-none potentiation at CA3-CA1 synapses. Proceedings of the National Academy of Sciences of the United States of America. 95: 4732-7. PMID 9539807 DOI: 10.1073/Pnas.95.8.4732  0.34
1998 Hopfield JJ, Brody CD, Roweis S. Computing with action potentials Advances in Neural Information Processing Systems. 166-172.  0.713
1997 Hopfield JJ. Authorship: truth in labeling. Science (New York, N.Y.). 275: 1403. PMID 9072800 DOI: 10.1126/Science.275.5305.1401C  0.319
1997 Dong DW, Hopfield JJ, Unnikrishnan KP. Neural networks for engine fault diagnostics Neural Networks For Signal Processing - Proceedings of the Ieee Workshop. 636-644.  0.54
1996 Hopfield JJ. Transforming neural computations and representing time. Proceedings of the National Academy of Sciences of the United States of America. 93: 15440-4. PMID 8986830 DOI: 10.1073/pnas.93.26.15440  0.403
1996 Qian H, Hopfield JJ. Entropy-enthalpy compensation: Perturbation and relaxation in thermodynamic systems Journal of Chemical Physics. 105: 9292-9298. DOI: 10.1063/1.472728  0.431
1995 Herz AV, Hopfield JJ. Earthquake cycles and neural reverberations: Collective oscillations in systems with pulse-coupled threshold elements. Physical Review Letters. 75: 1222-1225. PMID 10060236 DOI: 10.1103/PhysRevLett.75.1222  0.641
1995 Hopfield JJ, Herz AV. Rapid local synchronization of action potentials: toward computation with coupled integrate-and-fire neurons. Proceedings of the National Academy of Sciences of the United States of America. 92: 6655-62. PMID 7624307 DOI: 10.1073/pnas.92.15.6655  0.683
1995 Hopfield JJ. Pattern recognition computation using action potential timing for stimulus representation. Nature. 376: 33-6. PMID 7596429 DOI: 10.1038/376033a0  0.441
1994 Hopfield JJ. An envisioning of consciousness. Science (New York, N.Y.). 263: 696. PMID 17747664 DOI: 10.1126/science.263.5147.696  0.304
1994 Hendin O, Horn D, Hopfield JJ. Decomposition of a mixture of signals in a model of the olfactory bulb. Proceedings of the National Academy of Sciences of the United States of America. 91: 5942-6. PMID 8016093 DOI: 10.1073/Pnas.91.13.5942  0.363
1992 Unnikrishnan KP, Hopfield JJ, Tank DW. Speaker-Independent Digit Recognition Using a Neural Network with Time-Delayed Connections Neural Computation. 4: 108-119. DOI: 10.1162/Neco.1992.4.1.108  0.752
1992 Dong DW, Hopfield JJ. Dynamic properties of neural networks with adapting synapses Network: Computation in Neural Systems. 3: 267-283. DOI: 10.1088/0954-898X_3_3_002  0.521
1991 Hopfield JJ. Olfactory computation and object perception. Proceedings of the National Academy of Sciences of the United States of America. 88: 6462-6. PMID 1862075 DOI: 10.1073/pnas.88.15.6462  0.384
1991 Unnikrishnan KP, Hopfield JJ, Tank DW. Connected-Digit Speaker-Dependent Speech Recognition Using a Neural Network with Time-Delayed Connections Ieee Transactions On Signal Processing. 39: 698-713. DOI: 10.1109/78.80888  0.751
1990 Hopfield JJ. The effectiveness of analogue 'neural network' hardware Network: Computation in Neural Systems. 1: 27-40. DOI: 10.1088/0954-898X_1_1_003  0.332
1990 Hopfield JJ. Dynamics and neural network computation International Journal of Quantum Chemistry. 38: 633-644. DOI: 10.1002/Qua.560382461  0.354
1989 Li Z, Hopfield JJ. Modeling the olfactory bulb and its neural oscillatory processings. Biological Cybernetics. 61: 379-92. PMID 2551392 DOI: 10.1007/BF00200803  0.377
1989 Hopfield JJ, Onuchic JN, Beratan DN. Electronic shift register memory based on molecular electron-transfer reactions Journal of Physical Chemistry. 93: 6350-6357. DOI: 10.1021/J100354A017  0.615
1988 Hopfield JJ, Onuchic JN, Beratan DN. A molecular shift register based on electron transfer. Science (New York, N.Y.). 241: 817-20. PMID 17829175 DOI: 10.1126/science.241.4867.817  0.64
1988 Hopfield JJ. Artificial Neural Networks Ieee Circuits and Devices Magazine. 4: 3-10. DOI: 10.1109/101.8118  0.342
1987 Hopfield JJ, Tank DW. Response: computing with neural networks. Science (New York, N.Y.). 235: 1228-9. PMID 17818984 DOI: 10.1126/science.235.4793.1228  0.719
1987 Hopfield JJ. Learning algorithms and probability distributions in feed-forward and feed-back networks. Proceedings of the National Academy of Sciences of the United States of America. 84: 8429-33. PMID 16593901 DOI: 10.1073/Pnas.84.23.8429  0.384
1987 Tank DW, Hopfield JJ. Neural computation by concentrating information in time. Proceedings of the National Academy of Sciences of the United States of America. 84: 1896-900. PMID 3470765 DOI: 10.1073/Pnas.84.7.1896  0.737
1987 Tank DW, Hopfield JJ. Collective computation in neuronlike circuits. Scientific American. 257: 104-14. PMID 3452925 DOI: 10.1038/Scientificamerican1287-104  0.703
1987 Beratan DN, Onuchic JN, Hopfield JJ. Electron tunneling through covalent and noncovalent pathways in proteins The Journal of Chemical Physics. 86: 4488-4498. DOI: 10.1063/1.452723  0.597
1987 Hopfield JJ, Tank DW. Computing with neural networks [3] Science. 235: 1228-1229.  0.687
1987 Tank DW, Hopfield JJ. CONCENTRATION INFORMATION IN TIME: ANALOG NEURAL NETWORKS WITH APPLICATIONS TO SPEECH RECOGNITION PROBLEMS. . iv/455-468.  0.676
1986 Hopfield JJ, Tank DW. Computing with neural circuits: a model. Science (New York, N.Y.). 233: 625-33. PMID 3755256 DOI: 10.1126/Science.3755256  0.736
1986 Tank DW, Hopfield JJ. SIMPLE 'NEURAL' OPTIMIZATION NETWORKS: AN A/D CONVERTER, SIGNAL DECISION CIRCUIT, AND A LINEAR PROGRAMMING CIRCUIT. Ieee Transactions On Circuits and Systems. 533-541. DOI: 10.1109/Tcs.1986.1085953  0.698
1986 Onuchic JN, Beratan DN, Hopfield JJ. Some aspects of electron-transfer reaction dynamics Journal of Physical Chemistry. 90: 3707-3721. DOI: 10.1021/J100407A045  0.6
1985 Henry ER, Rousseau DL, Hopfield JJ, Noble RW, Simon SR. Spectroscopic studies of protein-heme interactions accompanying the allosteric transition in methemoglobins. Biochemistry. 24: 5907-18. PMID 4084499 DOI: 10.1021/Bi00342A033  0.331
1985 Hopfield JJ, Tank DW. "Neural" computation of decisions in optimization problems. Biological Cybernetics. 52: 141-52. PMID 4027280 DOI: 10.1007/BF00339943  0.731
1985 Beratan DN, Onuchic JN, Hopfield JJ. Limiting forms of the tunneling matrix element in the long distance bridge mediated electron transfer problem The Journal of Chemical Physics. 83: 5325-5329. DOI: 10.1063/1.449694  0.619
1984 Hopfield JJ. Neurons with graded response have collective computational properties like those of two-state neurons. Proceedings of the National Academy of Sciences of the United States of America. 81: 3088-92. PMID 6587342 DOI: 10.1073/Pnas.81.10.3088  0.411
1984 Cho KC, Blair DF, Banerjee U, Hopfield JJ, Gray HB, Pecht I, Chan SI. NMR spectroscopic identification of a hexacyanochromate(III) binding site on Pseudomonas azurin. Biochemistry. 23: 1858-62. PMID 6426509 DOI: 10.1021/Bi00303A042  0.528
1984 Beratan DN, Hopfield JJ. Failure of the Born-Oppenheimer and Franck-Condon approximations for long distance electron transfer rate calculations The Journal of Chemical Physics. 81: 5753-5759. DOI: 10.1063/1.447627  0.531
1984 Beratan DN, Hopfield JJ. Calculation of tunneling matrix elements in rigid systems: mixed-valence dithiaspirocyclobutane molecules Journal of the American Chemical Society. 106: 1584-1594. DOI: 10.1021/Ja00318A008  0.462
1983 Hopfield JJ, Feinstein DI, Palmer RG. 'Unlearning' has a stabilizing effect in collective memories. Nature. 304: 158-9. PMID 6866109 DOI: 10.1038/304158A0  0.362
1982 Barton JK, Den Hollander JA, Hopfield JJ, Shulman RG. 13C nuclear magnetic resonance study of trehalose mobilization in yeast spores. Journal of Bacteriology. 151: 177-85. PMID 7085557 DOI: 10.1128/Jb.151.1.177-185.1982  0.642
1982 Hopfield JJ. Neural networks and physical systems with emergent collective computational abilities. Proceedings of the National Academy of Sciences of the United States of America. 79: 2554-8. PMID 6953413 DOI: 10.1073/Pnas.79.8.2554  0.423
1981 Yamane T, Miller DL, Hopfield JJ. Discrimination between D- and L-tyrosyl transfer ribonucleic acids in peptide chain elongation. Biochemistry. 20: 7059-64. PMID 7032588  0.209
1981 Miller DL, Yamane T, Hopfield JJ. Effect of transfer ribonucleic acid dimer formation on polyphenylalanine biosynthesis. Biochemistry. 20: 5457-61. PMID 7028105 DOI: 10.1021/Bi00522A016  0.335
1981 Yamane T, Miller DL, Hopfield JJ. Interaction of elongation factor Tu with the aminoacyl transfer ribonucleic acid dimer Phe-tRNA-Glu-tRNA. Biochemistry. 20: 449-52. PMID 7008845 DOI: 10.1021/Bi00505A034  0.343
1981 Redi MH, Gerstman BS, Hopfield JJ. Hemoglobin-carbon monoxide binding rate. Low temperature magneto-optical detection of spin-tunneling. Biophysical Journal. 35: 471-84. PMID 6268215 DOI: 10.1016/S0006-3495(81)84803-5  0.608
1980 Hopfield JJ. The energy relay: a proofreading scheme based on dynamic cooperativity and lacking all characteristic symptoms of kinetic proofreading in DNA replication and protein synthesis. Proceedings of the National Academy of Sciences of the United States of America. 77: 5248-52. PMID 6933556 DOI: 10.1073/Pnas.77.9.5248  0.343
1979 Cho KC, Hopfield JJ. Spin equilibrium and quaternary structure change in hemoglobin A. Experiments on a quantitative probe of the stereochemical mechanism of hemoglobin cooperativity. Biochemistry. 18: 5826-33. PMID 518870 DOI: 10.1021/Bi00593A012  0.353
1978 Hopfield JJ. Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading. Proceedings of the National Academy of Sciences of the United States of America. 75: 4334-8. PMID 279919 DOI: 10.1073/Pnas.75.9.4334  0.335
1977 Hopfield JJ. Photo-induced charge transfer. A critical test of the mechanism and range of biological electron transfer processes. Biophysical Journal. 18: 311-21. PMID 890029 DOI: 10.1016/S0006-3495(77)85616-6  0.4
1977 Yamane T, Hopfield JJ. Experimental evidence for kinetic proofreading in the aminoacylation of tRNA by synthetase. Proceedings of the National Academy of Sciences of the United States of America. 74: 2246-50. PMID 329276 DOI: 10.1073/Pnas.74.6.2246  0.307
1977 Potasek MJ, Hopfield JJ. Fundamental aspects of electron transfer: experimental verification of vibronically coupled electron tunneling. Proceedings of the National Academy of Sciences of the United States of America. 74: 3817-20. PMID 198806 DOI: 10.1073/Pnas.74.9.3817  0.697
1977 Potasek MJ, Hopfield JJ. Experimental test of the vibronically coupled tunneling description of biological electron transfer. Proceedings of the National Academy of Sciences of the United States of America. 74: 229-33. PMID 189307 DOI: 10.1073/Pnas.74.1.229  0.694
1976 Ferrone FA, Hopfield JJ. Rate of quaternary structure change in hemoglobin measured by modulated excitation. Proceedings of the National Academy of Sciences of the United States of America. 73: 4497-501. PMID 1070000 DOI: 10.1073/Pnas.73.12.4497  0.608
1976 Hopfield JJ, Yamane T, Yue V, Coutts SM. Direct experimental evidence for kinetic proofreading in amino acylation of tRNAIle. Proceedings of the National Academy of Sciences of the United States of America. 73: 1164-8. PMID 1063397 DOI: 10.1073/Pnas.73.4.1164  0.348
1976 Hopfield JJ. On electron transfer. Biophysical Journal. 16: 1239-40. PMID 963200 DOI: 10.1016/S0006-3495(76)85769-4  0.371
1976 Girvin SM, Hopfield JJ. Exchange effects in the Li K edge Physical Review Letters. 37: 1091-1094. DOI: 10.1103/Physrevlett.37.1091  0.48
1975 Shulman RG, Hopfield JJ, Ogawa S. Allosteric interpretation of haemoglobin properties. Quarterly Reviews of Biophysics. 8: 325-420. PMID 726 DOI: 10.1017/S0033583500001840  0.491
1975 Ferrone FA, Hopfield JJ. Structural kinetics of co binding in hemoglobin Biophysical Journal. 15: 81A.  0.502
1974 Hopfield JJ. Electron transfer between biological molecules by thermally activated tunneling. Proceedings of the National Academy of Sciences of the United States of America. 71: 3640-4. PMID 16592178 DOI: 10.1073/Pnas.71.9.3640  0.391
1974 Hopfield JJ. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proceedings of the National Academy of Sciences of the United States of America. 71: 4135-9. PMID 4530290 DOI: 10.1073/Pnas.71.10.4135  0.353
1974 Ferrone FA, Hopfield JJ, Schnatterly SE. The measurement of transient circular dichroism: A new kinetic technique Review of Scientific Instruments. 45: 1392-1396. DOI: 10.1063/1.1686510  0.559
1973 Hopfield JJ. Relation between structure, co-operativity and spectra in a model of hemoglobin action. Journal of Molecular Biology. 77: 207-22. PMID 4765360 DOI: 10.1016/0022-2836(73)90332-X  0.355
1972 Shulman RG, Ogawa S, Hopfield JJ. An allosteric model of hemoglobin. II. The assumption of independent binding. Archives of Biochemistry and Biophysics. 151: 68-74. PMID 5065171 DOI: 10.1016/0003-9861(72)90474-2  0.499
1972 Hopfield JJ, Ogawa S, Shulman RG. The rate of carbon monoxide binding to hemoglobin Kansas. Biochemical and Biophysical Research Communications. 49: 1480-4. PMID 4639807 DOI: 10.1016/0006-291X(72)90506-2  0.512
1972 Shulman RG, Ogawa S, Hopfield JJ. An allosteric model of hemoglobin. Cold Spring Harbor Symposia On Quantitative Biology. 36: 337-41. PMID 4508146 DOI: 10.1101/Sqb.1972.036.01.044  0.489
1971 Hopfield JJ, Shulman RG, Ogawa S. An allosteric model of hemoglobin. I. Kinetics. Journal of Molecular Biology. 61: 425-43. PMID 5130300 DOI: 10.1016/0022-2836(71)90391-3  0.514
1968 Anderson PW, Hopfield JJ. Quality Education: Hanged without a Trial. Science (New York, N.Y.). 162: 850. PMID 17769068 DOI: 10.1126/Science.162.3856.850  0.285
1966 Hopfield JJ. Mechanism of lunar polarization. Science (New York, N.Y.). 151: 1380-1. PMID 17817298 DOI: 10.1126/science.151.3716.1380  0.315
1964 Mahan GD, Hopfield JJ. Piezoelectric polaron effects in CdS Physical Review Letters. 12: 241-243. DOI: 10.1103/Physrevlett.12.241  0.447
1964 Mahan GD, Hopfield JJ. Optical effects of energy terms linear in wave vector Physical Review. 135: A428-A433. DOI: 10.1103/Physrev.135.A428  0.468
1963 Mahan GD, Hopfield JJ. Proposal for Beating Two Optical Masers Journal of Applied Physics. 34: 1531-1534. DOI: 10.1063/1.1729673  0.491
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