Jorge Luiz Rodrigues - Publications

2000 Michigan State University, East Lansing, MI 

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kroeger ME, Meredith LK, Meyer KM, Webster KD, de Camargo PB, de Souza LF, Tsai SM, van Haren J, Saleska S, Bohannan BJM, Rodrigues JLM, Berenguer E, Barlow J, Nüsslein K. Rainforest-to-pasture conversion stimulates soil methanogenesis across the Brazilian Amazon. The Isme Journal. PMID 33082572 DOI: 10.1038/s41396-020-00804-x  0.4
2020 Meyer KM, Morris AH, Webster K, Klein AM, Kroeger ME, Meredith LK, Brændholt A, Nakamura F, Venturini A, Fonseca de Souza L, Shek KL, Danielson R, van Haren J, Barbosa de Camargo P, Tsai SM, ... ... Rodrigues JLM, et al. Belowground changes to community structure alter methane-cycling dynamics in Amazonia. Environment International. 145: 106131. PMID 32979812 DOI: 10.1016/j.envint.2020.106131  0.4
2020 Mirza BS, McGlinn DJ, Bohannan BJM, Nüsslein K, Tiedje JM, Rodrigues JLM. Diazotrophs show sign of restoration in Amazon rainforest soils with ecosystem rehabilitation. Applied and Environmental Microbiology. PMID 32169937 DOI: 10.1128/Aem.00195-20  0.72
2018 Khan MAW, Bohannan BJM, Nüsslein K, Tiedje JM, Tringe SG, Parlade E, Barberán A, Rodrigues JLM. Deforestation Impacts Network Co-occurrence Patterns of Microbial Communities in Amazon Soils. Fems Microbiology Ecology. PMID 30481288 DOI: 10.1093/Femsec/Fiy230  0.72
2018 Kroeger ME, Delmont TO, Eren AM, Meyer KM, Guo J, Khan K, Rodrigues JLM, Bohannan BJM, Tringe SG, Borges CD, Tiedje JM, Tsai SM, Nüsslein K. New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes. Frontiers in Microbiology. 9: 1635. PMID 30083144 DOI: 10.3389/Fmicb.2018.01635  0.72
2017 Meyer KM, Klein AM, Rodrigues JL, Nüsslein K, Tringe SG, Mirza BS, Tiedje JM, Bohannan BJ. Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms. Molecular Ecology. PMID 28100018 DOI: 10.1111/Mec.14011  0.72
2016 Hambright WS, Deng J, Tiedje JM, Brettar I, Rodrigues JL. Shewanella baltica Ecotypes Have Wide Transcriptional Variation under the Same Growth Conditions. Msphere. 1. PMID 27777983 DOI: 10.1128/mSphere.00158-16  0.72
2016 Khakhum N, Yordpratum U, Boonmee A, Tattawasart U, Rodrigues JL, Sermswan RW. Cloning, expression, and characterization of a peptidoglycan hydrolase from the Burkholderia pseudomallei phage ST79. Amb Express. 6: 77. PMID 27637947 DOI: 10.1186/s13568-016-0251-7  0.72
2016 Pylro VS, Mui TS, Rodrigues JL, Andreote FD, Roesch LF. A Step Forward to Empower Global Microbiome Research Through Local Leadership. Trends in Microbiology. PMID 27498946 DOI: 10.1016/j.tim.2016.07.007  0.72
2016 Khakhum N, Yordpratum U, Boonmee A, Tattawasart U, Rodrigues JL, Sermswan RW. Identification of the Burkholderia pseudomallei bacteriophage ST79 lysis gene cassette. Journal of Applied Microbiology. PMID 27038077 DOI: 10.1111/jam.13151  0.72
2016 Mueller RC, Rodrigues JLM, Nüsslein K, Bohannan BJM. Land use change in the Amazon rain forest favours generalist fungi Functional Ecology. DOI: 10.1111/1365-2435.12651  0.72
2016 Hamaoui GS, Rodrigues JLM, Bohannan BJM, Tiedje JM, Nüsslein K. Land-use change drives abundance and community structure alterations of thaumarchaeal ammonia oxidizers in tropical rainforest soils in Rondônia, Brazil Applied Soil Ecology. 107: 48-56. DOI: 10.1016/J.Apsoil.2016.05.012  0.72
2015 Navarrete AA, Venturini AM, Meyer KM, Klein AM, Tiedje JM, Bohannan BJ, Nüsslein K, Tsai SM, Rodrigues JL. Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon. Frontiers in Microbiology. 6: 1443. PMID 26733981 DOI: 10.3389/Fmicb.2015.01443  0.72
2015 Ngamsang R, Potisap C, Boonmee A, Lawongsa P, Chaianunporn T, Wongratanacheewin S, Rodrigues JL, Sermswan RW. THE CONTRIBUTION OF SOIL PHYSICOCHEMICAL PROPERTIES TO THE PRESENCE AND GENETIC DIVERSITY OF BURKHOLDERIA PSEUDOMALLEI. The Southeast Asian Journal of Tropical Medicine and Public Health. 46: 38-50. PMID 26513904  0.72
2015 Ranjan K, Paula FS, Mueller RC, Jesus Eda C, Cenciani K, Bohannan BJ, Nüsslein K, Rodrigues JL. Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils. Frontiers in Microbiology. 6: 779. PMID 26284056 DOI: 10.3389/Fmicb.2015.00779  0.72
2014 Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH. Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities. Molecular Ecology. 23: 2988-99. PMID 24806276 DOI: 10.1111/Mec.12786  0.72
2014 Mueller RC, Paula FS, Mirza BS, Rodrigues JL, Nüsslein K, Bohannan BJ. Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest. The Isme Journal. 8: 1548-50. PMID 24451208 DOI: 10.1038/Ismej.2013.253  0.72
2014 Deng J, Brettar I, Luo C, Auchtung J, Konstantinidis KT, Rodrigues JL, Höfle M, Tiedje JM. Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea. Environmental Microbiology. 16: 1854-66. PMID 24286373 DOI: 10.1111/1462-2920.12344  0.72
2013 Isanapong J, Sealy Hambright W, Willis AG, Boonmee A, Callister SJ, Burnum KE, PaÅ¡a-Tolić L, Nicora CD, Wertz JT, Schmidt TM, Rodrigues JL. Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium. The Isme Journal. 7: 1803-13. PMID 23657364 DOI: 10.1038/Ismej.2013.74  0.72
2013 Rodrigues JL, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SM, Feigl B, Tiedje JM, Bohannan BJ, Nüsslein K. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America. 110: 988-93. PMID 23271810 DOI: 10.1073/Pnas.1220608110  0.72
2013 Galuppo AG, Junior NB, Arruda NS, Corbellini AO, Chiappetta CM, Pavão DL, D'Angelo M, Canal CW, Rodrigues JL. Evaluation of the effectiveness of semen processing techniques to remove bovine viral diarrhea virus from experimentally contaminated semen samples. Journal of Virological Methods. 187: 443-8. PMID 23219984 DOI: 10.1016/j.jviromet.2012.11.029  0.01
2013 Sul WJ, Asuming-Brempong S, Wang Q, Tourlousse DM, Penton CR, Deng Y, Rodrigues JLM, Adiku SGK, Jones JW, Zhou J, Cole JR, Tiedje JM. Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon Soil Biology and Biochemistry. 65: 33-38. DOI: 10.1016/J.Soilbio.2013.05.007  0.72
2012 Duerkop BA, Clements CV, Rollins D, Rodrigues JL, Hooper LV. A composite bacteriophage alters colonization by an intestinal commensal bacterium. Proceedings of the National Academy of Sciences of the United States of America. 109: 17621-6. PMID 23045666 DOI: 10.1073/pnas.1206136109  0.72
2012 Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JL. Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes. Applied and Environmental Microbiology. 78: 1544-55. PMID 22194293 DOI: 10.1128/Aem.06466-11  0.72
2011 Rodrigues JL, Serres MH, Tiedje JM. Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species and identify metabolic pathways conserved at the genus level. Applied and Environmental Microbiology. 77: 5352-60. PMID 21642407 DOI: 10.1128/Aem.00097-11  0.72
2011 Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM. Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1. Bmc Microbiology. 11: 64. PMID 21450087 DOI: 10.1186/1471-2180-11-64  0.72
2011 Mueller RC, Nüsslein K, Rodrigues J, Tiedje J, Pellizari V, Feigl B, Bohannan B. Microbial responses to changes in land use Nature Precedings. 6: 1-1. DOI: 10.1038/Npre.2011.5505.1  0.4
2010 Hinsa-Leasure SM, Bhavaraju L, Rodrigues JL, Bakermans C, Gilichinsky DA, Tiedje JM. Characterization of a bacterial community from a Northeast Siberian seacoast permafrost sample. Fems Microbiology Ecology. 74: 103-13. PMID 20695892 DOI: 10.1111/J.1574-6941.2010.00945.X  0.72
2010 Rodrigues JL, de Souza SS, de Oliveira Souza VC, Barbosa F. Methylmercury and inorganic mercury determination in blood by using liquid chromatography with inductively coupled plasma mass spectrometry and a fast sample preparation procedure. Talanta. 80: 1158-63. PMID 20006068 DOI: 10.1016/j.talanta.2009.09.001  0.01
2010 da Jesus EC, Susilawati E, Smith SL, Wang Q, Chai B, Farris R, Rodrigues JLM, Thelen KD, Tiedje JM. Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences Bioenergy Research. 3: 20-27. DOI: 10.1007/S12155-009-9073-7  0.72
2009 Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences of the United States of America. 106: 15909-14. PMID 19805231 DOI: 10.1073/Pnas.0902000106  0.72
2009 Sul WJ, Park J, Quensen JF, Rodrigues JL, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology. 75: 5501-6. PMID 19648381 DOI: 10.1128/Aem.00121-09  0.72
2008 Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, et al. Towards environmental systems biology of Shewanella. Nature Reviews. Microbiology. 6: 592-603. PMID 18604222 DOI: 10.1038/Nrmicro1947  0.72
2008 Rodrigues JL, Duffy MA, Tessier AJ, Ebert D, Mouton L, Schmidt TM. Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species. Applied and Environmental Microbiology. 74: 1575-82. PMID 18192404 DOI: 10.1128/Aem.02438-07  0.72
2007 Leigh MB, Pellizari VH, Uhlík O, Sutka R, Rodrigues J, Ostrom NE, Zhou J, Tiedje JM. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs) Isme Journal. 1: 134-148. PMID 18043623 DOI: 10.1038/Ismej.2007.26  0.72
2006 Rodrigues JL, Kachel CA, Aiello MR, Quensen JF, Maltseva OV, Tsoi TV, Tiedje JM. Degradation of aroclor 1242 dechlorination products in sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. strain RHA1(fcb). Applied and Environmental Microbiology. 72: 2476-82. PMID 16597946 DOI: 10.1128/Aem.72.4.2476-2482.2006  0.72
2006 Rodrigues JL, Silva-Stenico ME, de Souza AN, Lopes JR, Tsai SM. In situ probing of Xylella fastidiosa in honeydew of a xylem sap-feeding insect using 16S rRNA-targeted fluorescent oligonucleotides. Environmental Microbiology. 8: 747-54. PMID 16584486 DOI: 10.1111/j.1462-2920.2005.00958.x  0.72
2006 Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JL, Tsoi TV, Verstraete W, Eltis LD, Tiedje JM. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Applied and Environmental Microbiology. 72: 585-95. PMID 16391095 DOI: 10.1128/AEM.72.1.585-595.2006  0.72
2005 Fiore Mde F, Neilan BA, Copp JN, Rodrigues JL, Tsai SM, Lee H, Trevors JT. Characterization of nitrogen-fixing cyanobacteria in the Brazilian Amazon floodplain. Water Research. 39: 5017-26. PMID 16289234 DOI: 10.1016/J.Watres.2005.10.002  0.72
2003 Denef VJ, Park J, Rodrigues JL, Tsoi TV, Hashsham SA, Tiedje JM. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environmental Microbiology. 5: 933-43. PMID 14510847 DOI: 10.1046/J.1462-2920.2003.00490.X  0.72
2003 Rodrigues JL, Silva-Stenico ME, Gomes JE, Lopes JR, Tsai SM. Detection and diversity assessment of Xylella fastidiosa in field-collected plant and insect samples by using 16S rRNA and gyrB sequences. Applied and Environmental Microbiology. 69: 4249-55. PMID 12839807 DOI: 10.1128/AEM.69.7.4249-4255.2003  0.72
2002 Rodrigues JL, Aiello MR, Urbance JW, Tsoi TV, Tiedje JM. Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. Journal of Microbiological Methods. 51: 181-9. PMID 12133610 DOI: 10.1016/S0167-7012(02)00067-2  0.72
2001 Rodrigues JL, Maltseva OV, Tsoi TV, Helton RR, Quensen JF, Fukuda M, Tiedje JM. Development of a Rhodococcus recombinant strain for degradation of products from anaerobic dechlorination of PCBs. Environmental Science & Technology. 35: 663-8. PMID 11349275 DOI: 10.1021/Es001308T  0.72
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