Johannes Graumann, Ph.D. - Publications

Affiliations: 
2000-2006 California Institute of Technology, Pasadena, CA 
 2011-2016 Weill Cornell Medical College in Qatar 
 2016- Biomolecular Mass Spectrometry Max Planck Institute for Heart and Lung Research 
Area:
Proteomics, Embryonic stem cells
Website:
https://mpi-hlr.de/en/forschung/service-groups/biomolecular-mass-spectrometry/

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Majeed Y, Halabi N, Madani AY, Engelke R, Bhagwat AM, Abdesselem H, Agha MV, Vakayil M, Courjaret R, Goswami N, Hamidane HB, Elrayess MA, Rafii A, Graumann J, Schmidt F, et al. SIRT1 promotes lipid metabolism and mitochondrial biogenesis in adipocytes and coordinates adipogenesis by targeting key enzymatic pathways. Scientific Reports. 11: 8177. PMID 33854178 DOI: 10.1038/s41598-021-87759-x  1
2020 Kahal H, Halama A, Aburima A, Bhagwat AM, Butler AE, Graumann J, Suhre K, Sathyapalan T, Atkin SL. Author Correction: Effect of induced hypoglycemia on inflammation and oxidative stress in type 2 diabetes and control subjects. Scientific Reports. 10: 10233. PMID 32561766 DOI: 10.1038/S41598-020-66189-1  1
2019 Billing AM, Dib SS, Bhagwat AM, da Silva IT, Drummond RD, Hayat S, Al-Mismar R, Ben Hamidane H, Goswami N, Engholm-Keller K, Larsen MR, Suhre K, Rafii A, Graumann J. A Systems-Level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells. Molecular & Cellular Proteomics : McP. PMID 31332097 DOI: 10.1074/Mcp.Ra119.001356  1
2018 Halama A, Kahal H, Bhagwat AM, Zierer J, Sathyapalan T, Graumann J, Suhre K, Atkin SL. Metabolic and proteomic signatures of hypoglycaemia in type 2 diabetes. Diabetes, Obesity & Metabolism. PMID 30525282 DOI: 10.1111/Dom.13602  1
2018 Choi S, Bhagwat AM, Al Mismar R, Goswami N, Ben Hamidane H, Sun L, Graumann J. Proteomic profiling of human cancer pseudopodia for the identification of anti-metastatic drug candidates. Scientific Reports. 8: 5858. PMID 29643415 DOI: 10.1038/S41598-018-24256-8  1
2017 Guo M, Zhang T, Dong X, Xiang JZ, Lei M, Evans T, Graumann J, Chen S. Using hESCs to Probe the Interaction of the Diabetes-Associated Genes CDKAL1 and MT1E. Cell Reports. 19: 1512-1521. PMID 28538172 DOI: 10.1016/J.Celrep.2017.04.070  1
2017 Suhre K, Arnold M, Bhagwat AM, Cotton RJ, Engelke R, Raffler J, Sarwath H, Thareja G, Wahl A, DeLisle RK, Gold L, Pezer M, Lauc G, El-Din Selim MA, Mook-Kanamori DO, ... ... Graumann J, et al. Erratum: Connecting genetic risk to disease end points through the human blood plasma proteome. Nature Communications. 8: 15345. PMID 28397792 DOI: 10.1038/ncomms15345  1
2017 Suhre K, Arnold M, Bhagwat AM, Cotton RJ, Engelke R, Raffler J, Sarwath H, Thareja G, Wahl A, DeLisle RK, Gold L, Pezer M, Lauc G, El-Din Selim MA, Mook-Kanamori DO, ... ... Graumann J, et al. Connecting genetic risk to disease end points through the human blood plasma proteome. Nature Communications. 8: 14357. PMID 28240269 DOI: 10.1038/Ncomms14357  1
2016 Billing AM, Hamidane HB, Bhagwat AM, Cotton RJ, Dib SS, Kumar P, Hayat S, Goswami N, Suhre K, Rafii A, Graumann J. Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells. Journal of Proteomics. PMID 27613379 DOI: 10.1016/J.Jprot.2016.08.023  1
2016 Zeng H, Guo M, Zhou T, Tan L, Chong CN, Zhang T, Dong X, Xiang JZ, Yu AS, Yue L, Qi Q, Evans T, Graumann J, Chen S. An Isogenic Human ESC Platform for Functional Evaluation of Genome-wide-Association-Study-Identified Diabetes Genes and Drug Discovery. Cell Stem Cell. PMID 27524441 DOI: 10.1016/J.Stem.2016.07.002  1
2016 Graham B, Marcais A, Dharmalingam G, Carroll T, Kanellopoulou C, Graumann J, Nesterova TB, Bermange A, Brazauskas P, Xella B, Kriaucionis S, Higgs DR, Brockdorff N, Mann M, Fisher AG, et al. MicroRNAs of the miR-290-295 Family Maintain Bivalency in Mouse Embryonic Stem Cells. Stem Cell Reports. 6: 635-642. PMID 27150236 DOI: 10.1016/J.Stemcr.2016.03.005  1
2016 Billing AM, Ben Hamidane H, Dib SS, Cotton RJ, Bhagwat AM, Kumar P, Hayat S, Yousri NA, Goswami N, Suhre K, Rafii A, Graumann J. Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers. Scientific Reports. 6: 21507. PMID 26857143 DOI: 10.1038/Srep21507  1
2016 Abdesselem H, Madani A, Hani A, Al-Noubi M, Goswami N, Ben Hamidane H, Billing AM, Pasquier J, Bonkowski MS, Halabi N, Dalloul R, Sheriff MZ, Mesaeli N, ElRayess M, Sinclair DA, ... Graumann J, et al. SIRT1 Limits Adipocyte Hyperplasia through c-Myc Inhibition. The Journal of Biological Chemistry. 291: 2119-35. PMID 26655722 DOI: 10.1074/Jbc.M115.675645  1
2016 Abdesselem H, Madani A, Hani A, Al-Noubi M, Goswami N, Ben Hamidane H, Billing AM, Pasquier J, Bonkowski MS, Halabi N, Dalloul R, Sheriff MZ, Mesaeli N, ElRayess M, Sinclair DA, ... Graumann J, et al. SIRT1 limits adipocyte hyperplasia through c-Myc inhibition Journal of Biological Chemistry. 291: 2119-2135. DOI: 10.1074/jbc.M115.675645  1
2015 Billing AM, Ben Hamidane H, Graumann J. Quantitative proteomic approaches in mouse: stable isotope incorporation by metabolic (SILAC) or chemical labeling (reductive dimethylation) combined with high-resolution mass spectrometry. Current Protocols in Mouse Biology. 5: 1-20. PMID 25727197 DOI: 10.1002/9780470942390.Mo140156  1
2015 Graham B, Marcais A, Dharmalingam G, Carroll T, Kanellopoulou C, Graumann J, Nesterova TB, Bermange A, Brazauskas P, Xella B, Kriaucionis S, Higgs DR, Brockdorff N, Mann M, Fisher AG, et al. MicroRNAs of the miR-290-295 Family Maintain Bivalency in Mouse Embryonic Stem Cells Stem Cell Reports. DOI: 10.1016/j.stemcr.2016.03.005  1
2014 Marcais A, Blevins R, Graumann J, Feytout A, Dharmalingam G, Carroll T, Amado IF, Bruno L, Lee K, Walzer T, Mann M, Freitas AA, Boothby M, Fisher AG, Merkenschlager M. microRNA-mediated regulation of mTOR complex components facilitates discrimination between activation and anergy in CD4 T cells. The Journal of Experimental Medicine. 211: 2281-95. PMID 25311506 DOI: 10.1084/Jem.20132059  1
2014 Blanc V, Park E, Schaefer S, Miller M, Lin Y, Kennedy S, Billing AM, Ben Hamidane H, Graumann J, Mortazavi A, Nadeau JH, Davidson NO. Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver. Genome Biology. 15: R79. PMID 24946870 DOI: 10.1186/Gb-2014-15-6-R79  1
2013 Liberski AR, Al-Noubi MN, Rahman ZH, Halabi NM, Dib SS, Al-Mismar R, Billing AM, Krishnankutty R, Ahmad FS, Raynaud CM, Rafii A, Engholm-Keller K, Graumann J. Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture Journal of Proteome Research. 12: 3233-3245. PMID 23734825 DOI: 10.1021/Pr400099J  1
2013 Stoehr G, Schaab C, Graumann J, Mann M. A SILAC-based approach identifies substrates of caspase-dependent cleavage upon TRAIL-induced apoptosis. Molecular & Cellular Proteomics : McP. 12: 1436-50. PMID 23319142 DOI: 10.1074/Mcp.M112.024679  0.6
2012 O'Loghlen A, Muñoz-Cabello AM, Gaspar-Maia A, Wu HA, Banito A, Kunowska N, Racek T, Pemberton HN, Beolchi P, Lavial F, Masui O, Vermeulen M, Carroll T, Graumann J, Heard E, et al. MicroRNA regulation of Cbx7 mediates a switch of Polycomb orthologs during ESC differentiation. Cell Stem Cell. 10: 33-46. PMID 22226354 DOI: 10.1016/J.Stem.2011.12.004  1
2012 Graumann J, Scheltema RA, Zhang Y, Cox J, Mann M. A framework for intelligent data acquisition and real-time database searching for shotgun proteomics. Molecular & Cellular Proteomics : McP. 11: M111.013185. PMID 22171319 DOI: 10.1074/Mcp.M111.013185  0.6
2010 Singhal N, Graumann J, Wu G, Araúzo-Bravo MJ, Han DW, Greber B, Gentile L, Mann M, Schöler HR. Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming. Cell. 141: 943-55. PMID 20550931 DOI: 10.1016/J.Cell.2010.04.037  0.6
2008 Alexandru G, Graumann J, Smith GT, Kolawa NJ, Fang R, Deshaies RJ. UBXD7 binds multiple ubiquitin ligases and implicates p97 in HIF1alpha turnover. Cell. 134: 804-16. PMID 18775313 DOI: 10.1016/J.Cell.2008.06.048  1
2008 Graumann J, Hubner NC, Kim JB, Ko K, Moser M, Kumar C, Cox J, Schöler H, Mann M. Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Molecular & Cellular Proteomics : McP. 7: 672-83. PMID 18045802 DOI: 10.1074/Mcp.M700460-Mcp200  0.6
2007 Mayor T, Graumann J, Bryan J, MacCoss MJ, Deshaies RJ. Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway. Molecular & Cellular Proteomics : McP. 6: 1885-95. PMID 17644757 DOI: 10.1074/Mcp.M700264-Mcp200  1
2007 Dieterich DC, Lee JJ, Link AJ, Graumann J, Tirrell DA, Schuman EM. Labeling, detection and identification of newly synthesized proteomes with bioorthogonal non-canonical amino-acid tagging. Nature Protocols. 2: 532-40. PMID 17406607 DOI: 10.1038/Nprot.2007.52  1
2006 Dieterich DC, Link AJ, Graumann J, Tirrell DA, Schuman EM. Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT). Proceedings of the National Academy of Sciences of the United States of America. 103: 9482-7. PMID 16769897 DOI: 10.1073/Pnas.0601637103  1
2005 Mayor T, Lipford JR, Graumann J, Smith GT, Deshaies RJ. Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets. Molecular & Cellular Proteomics : McP. 4: 741-51. PMID 15699485 DOI: 10.1074/Mcp.M400220-Mcp200  1
2004 McDonald WH, Tabb DL, Sadygov RG, MacCoss MJ, Venable J, Graumann J, Johnson JR, Cociorva D, Yates JR. MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. Rapid Communications in Mass Spectrometry : Rcm. 18: 2162-8. PMID 15317041 DOI: 10.1002/Rcm.1603  1
2004 Verma R, Oania R, Graumann J, Deshaies RJ. Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system. Cell. 118: 99-110. PMID 15242647 DOI: 10.1016/J.Cell.2004.06.014  1
2004 Graumann J, Dunipace LA, Seol JH, McDonald WH, Yates JR, Wold BJ, Deshaies RJ. Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Molecular & Cellular Proteomics : McP. 3: 226-37. PMID 14660704 DOI: 10.1074/Mcp.M300099-Mcp200  1
2001 Vijayalakshmi J, Mukhergee MK, Graumann J, Jakob U, Saper MA. The 2.2 Å crystal structure of Hsp33: A heat shock protein with redox-regulated chaperone activity Structure. 9: 367-375. PMID 11377197 DOI: 10.1016/S0969-2126(01)00597-4  1
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