Joseph Zaia - Publications

Affiliations: 
Boston University, Boston, MA, United States 
Area:
Biochemistry

124 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 De Leoz MLA, Duewer DL, Fung A, Liu L, Yau HK, Potter O, Staples GO, Furuki K, Frenkel R, Hu Y, Sosic Z, Zhang P, Altmann F, Gruber C, Shao C, ... Zaia J, et al. NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods. Molecular & Cellular Proteomics : McP. PMID 31591262 DOI: 10.1074/mcp.RA119.001677  0.92
2019 Jacobsen Á, Shi X, Shao C, Eysturskarδ J, Mikalsen SO, Zaia J. Characterization of Glycosaminoglycans in Gaping and Intact Connective Tissues of Farmed Atlantic Salmon () Fillets by Mass Spectrometry. Acs Omega. 4: 15337-15347. PMID 31572832 DOI: 10.1021/acsomega.9b01136  0.56
2019 Raghunathan R, Sethi MK, Klein JA, Zaia J. Proteomics, glycomics, and glycoproteomics of matrisome molecules. Molecular & Cellular Proteomics : McP. PMID 31471497 DOI: 10.1074/mcp.R119.001543  0.48
2019 Wei J, Wu J, Tang Y, Ridgeway ME, Park MA, Costello CE, Zaia J, Lin C. Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-TIMS NETD MS/MS. Analytical Chemistry. PMID 30649866 DOI: 10.1021/acs.analchem.8b05283  0.56
2018 Klein JA, Zaia J. psims - A declarative writer for mzML and mzIdentML for Python. Molecular & Cellular Proteomics : McP. PMID 30563850 DOI: 10.1074/mcp.RP118.001070  0.48
2018 Raghunathan R, Polinski NK, Klein JA, Hogan JD, Shao C, Khatri K, Leon DR, McComb ME, Manfredsson FP, Sortwell CE, Zaia J. Glycomic and Proteomic changes in aging brain nigrostriatal pathway. Molecular & Cellular Proteomics : McP. PMID 29915149 DOI: 10.1074/mcp.RA118.000680  0.6
2018 Klein JA, Meng L, Zaia J. Deep sequencing of complex proteoglycans: a novel strategy for high coverage and site-specific identification of glycosaminoglycan-linked peptides. Molecular & Cellular Proteomics : McP. PMID 29773674 DOI: 10.1074/mcp.RA118.000766  0.48
2018 van Eijk M, Rynkiewicz MJ, Khatri K, Leymarie N, Zaia J, White MR, Hartshorn KL, Cafarella TR, Van Die I, Hessing M, Seaton BA, Haagsman HP. Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus. The Journal of Biological Chemistry. PMID 29769321 DOI: 10.1074/jbc.RA117.001430  0.68
2018 Khatri K, Pu Y, Klein JA, Wei J, Costello CE, Lin C, Zaia J. Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides. Journal of the American Society For Mass Spectrometry. PMID 29663256 DOI: 10.1007/s13361-018-1909-y  0.56
2018 Hogan JD, Klein JA, Wu J, Chopra P, Boons GJ, Carvalho L, Lin C, Zaia J. Software for peak finding and elemental composition assignment for glycosaminoglycan tandem mass spectra. Molecular & Cellular Proteomics : McP. PMID 29615495 DOI: 10.1074/mcp.RA118.000590  0.48
2018 Turiák L, Tóth G, Ozohanics O, Révész Á, Ács A, Vékey K, Zaia J, Drahos L. Sensitive method for glycosaminoglycan analysis of tissue sections. Journal of Chromatography. A. PMID 29506752 DOI: 10.1016/j.chroma.2018.02.034  0.44
2017 Wu ZL, Person A, Anderson M, Burroughs B, Tatge T, Khatri K, Zou Y, Wang L, Geders T, Zaia J, Sackstein R. Imaging specific cellular glycan structures using glycosyltransferases via click chemistry. Glycobiology. PMID 29186441 DOI: 10.1093/glycob/cwx095  0.48
2017 Khatri K, Klein JA, Haserick J, Leon DR, Costello CE, McComb ME, Zaia J. Microfluidic capillary electrophoresis-mass spectrometry for analysis of monosaccharides, oligosaccharides and glycopeptides. Analytical Chemistry. PMID 28530388 DOI: 10.1021/acs.analchem.7b00875  0.6
2017 Glaskin RS, Khatri K, Wang Q, Zaia J, Costello CE. Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS. Analytical Chemistry. PMID 28323417 DOI: 10.1021/acs.analchem.6b04146  0.56
2017 Wu ZL, Huang X, Ethen CM, Tatge T, Pasek M, Zaia J. Non-reducing end labeling of heparan sulfate via click chemistry and a high throughput ELISA assay for heparanase. Glycobiology. 1-7. PMID 28173134 DOI: 10.1093/glycob/cww130  0.32
2016 Wu ZL, Huang X, Ethen C, Tatge T, Pasek M, Zaia J. Non-reducing end labeling of heparan sulfate via click chemistry and a high throughput ELISA assay for heparanase. Glycobiology. PMID 28025251 DOI: 10.1093/glycob/cww130  0.32
2016 Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, ... ... Zaia J, et al. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology. PMID 27993942 DOI: 10.1093/glycob/cww118  0.56
2016 Khatri K, Klein JA, Zaia J. Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation. Analytical and Bioanalytical Chemistry. PMID 27734143 DOI: 10.1007/s00216-016-9970-5  1
2016 Zaia J, Khatri K, Klein JA, Shao C, Sheng Y, Viner R. Complete Molecular Weight Profiling of Low Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High Resolution Mass Spectrometry. Analytical Chemistry. PMID 27709905 DOI: 10.1021/acs.analchem.6b03081  0.48
2016 Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, ... ... Zaia J, et al. The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology. PMID 27654115 DOI: 10.1093/glycob/cww082  1
2016 He H, Liu D, Lin H, Jiang S, Ying Y, Chun S, Deng H, Zaia J, Wen R, Luo Z. Phosphatidylethanolamine binding protein 4 (PEBP4) is a secreted protein and has multiple functions. Biochimica Et Biophysica Acta. PMID 27033522 DOI: 10.1016/j.bbamcr.2016.03.022  1
2016 Khatri K, Klein JA, White MR, Grant OC, Leymarie N, Woods RJ, Hartshorn KL, Zaia J. Integrated omics and computational glycobiology reveal structural basis for Influenza A virus glycan microheterogeneity and host interactions. Molecular & Cellular Proteomics : McP. PMID 26984886 DOI: 10.1074/mcp.M116.058016  1
2016 Tykesson E, Mao Y, Maccarana M, Pu Y, Gao J, Lin C, Zaia J, Westergren-Thorsson G, Ellervik U, Malmström L, Malmström A. Deciphering the Mode of Action of the Processive Polysaccharide Modifying Enzyme Dermatan Sulfate Epimerase 1 by Hydrogen-Deuterium Exchange Mass Spectrometry. Chemical Science (Royal Society of Chemistry : 2010). 7: 1447-1456. PMID 26900446 DOI: 10.1039/C5SC03798K  1
2016 Hu H, Khatri K, Zaia J. Algorithms and design strategies towards automated glycoproteomics analysis. Mass Spectrometry Reviews. PMID 26728195 DOI: 10.1002/mas.21487  1
2015 Hu H, Khatri K, Klein J, Leymarie N, Zaia J. A review of methods for interpretation of glycopeptide tandem mass spectral data. Glycoconjugate Journal. PMID 26612686 DOI: 10.1007/s10719-015-9633-3  1
2015 Aoki-Kinoshita K, Agravat S, Aoki NP, Arpinar S, Cummings RD, Fujita A, Fujita N, Hart GM, Haslam SM, Kawasaki T, Matsubara M, Moreman KW, Okuda S, Pierce M, Ranzinger R, ... ... Zaia J, et al. GlyTouCan 1.0 - The international glycan structure repository. Nucleic Acids Research. PMID 26476458 DOI: 10.1093/nar/gkv1041  1
2015 Salanti A, Clausen TM, Agerbæk MØ, Al Nakouzi N, Dahlbäck M, Oo HZ, Lee S, Gustavsson T, Rich JR, Hedberg BJ, Mao Y, Barington L, Pereira MA, LoBello J, Endo M, ... ... Zaia J, et al. Targeting Human Cancer by a Glycosaminoglycan Binding Malaria Protein. Cancer Cell. 28: 500-14. PMID 26461094 DOI: 10.1016/j.ccell.2015.09.003  1
2015 Huang Y, Mao Y, Zong C, Lin C, Boons GJ, Zaia J. Discovery of a heparan sulfate 3-O-sulfation specific peeling reaction. Analytical Chemistry. 87: 592-600. PMID 25486437 DOI: 10.1021/ac503248k  1
2015 Reine TM, Kolseth IB, Meen AJ, Lindahl JP, Jenssen TG, Reinholt FP, Zaia J, Shao C, Hartmann A, Kolset SO. Effects of restoring normoglycemia in type 1 diabetes on inflammatory profile and renal extracellular matrix structure after simultaneous pancreas and kidney transplantation. Diabetes Research and Clinical Practice. 107: 46-53. PMID 25467621 DOI: 10.1016/j.diabres.2014.10.006  1
2014 Mao Y, Huang Y, Buczek-Thomas JA, Ethen CM, Nugent MA, Wu ZL, Zaia J. A liquid chromatography-mass spectrometry-based approach to characterize the substrate specificity of mammalian heparanase. The Journal of Biological Chemistry. 289: 34141-51. PMID 25336655 DOI: 10.1074/jbc.M114.589630  1
2014 Turiák L, Shao C, Meng L, Khatri K, Leymarie N, Wang Q, Pantazopoulos H, Leon DR, Zaia J. Workflow for combined proteomics and glycomics profiling from histological tissues. Analytical Chemistry. 86: 9670-8. PMID 25203838 DOI: 10.1021/ac5022216  1
2014 Khatri K, Staples GO, Leymarie N, Leon DR, Turiák L, Huang Y, Yip S, Hu H, Heckendorf CF, Zaia J. Confident assignment of site-specific glycosylation in complex glycoproteins in a single step. Journal of Proteome Research. 13: 4347-55. PMID 25153361 DOI: 10.1021/pr500506z  1
2014 Huang Y, Mao Y, Buczek-Thomas JA, Nugent MA, Zaia J. Oligosaccharide substrate preferences of human extracellular sulfatase Sulf2 using liquid chromatography-mass spectrometry based glycomics approaches. Plos One. 9: e105143. PMID 25127119 DOI: 10.1371/journal.pone.0105143  1
2014 Hu H, Huang Y, Mao Y, Yu X, Xu Y, Liu J, Zong C, Boons GJ, Lin C, Xia Y, Zaia J. A computational framework for heparan sulfate sequencing using high-resolution tandem mass spectra. Molecular & Cellular Proteomics : McP. 13: 2490-502. PMID 24925905 DOI: 10.1074/mcp.M114.039560  1
2014 Wu ZL, Robey MT, Tatge T, Lin C, Leymarie N, Zou Y, Zaia J. Detecting O-GlcNAc using in vitro sulfation. Glycobiology. 24: 740-7. PMID 24799377 DOI: 10.1093/glycob/cwu037  1
2014 York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, ... ... Zaia J, et al. MIRAGE: the minimum information required for a glycomics experiment. Glycobiology. 24: 402-6. PMID 24653214 DOI: 10.1093/glycob/cwu018  1
2014 Ramachandra R, Namburi RB, Ortega-Martinez O, Shi X, Zaia J, Dupont ST, Thorndyke MC, Lindahl U, Spillmann D. Brittlestars contain highly sulfated chondroitin sulfates/dermatan sulfates that promote fibroblast growth factor 2-induced cell signaling. Glycobiology. 24: 195-207. PMID 24253764 DOI: 10.1093/glycob/cwt100  1
2013 Mathias DK, Pastrana-Mena R, Ranucci E, Tao D, Ferruti P, Ortega C, Staples GO, Zaia J, Takashima E, Tsuboi T, Borg NA, Verotta L, Dinglasan RR. A small molecule glycosaminoglycan mimetic blocks Plasmodium invasion of the mosquito midgut. Plos Pathogens. 9: e1003757. PMID 24278017 DOI: 10.1371/journal.ppat.1003757  1
2013 Huang Y, Yu X, Mao Y, Costello CE, Zaia J, Lin C. De novo sequencing of heparan sulfate oligosaccharides by electron-activated dissociation. Analytical Chemistry. 85: 11979-86. PMID 24224699 DOI: 10.1021/ac402931j  1
2013 Hu H, Dittwald P, Zaia J, Valkenborg D. Comment on "Computation of isotopic peak center-mass distribution by fourier transform". Analytical Chemistry. 85: 12189-92. PMID 24187947 DOI: 10.1021/ac402731h  1
2013 Shao C, Shi X, Phillips JJ, Zaia J. Mass spectral profiling of glycosaminoglycans from histological tissue surfaces. Analytical Chemistry. 85: 10984-91. PMID 24099043 DOI: 10.1021/ac402517s  1
2013 Nugent MA, Zaia J, Spencer JL. Heparan sulfate-protein binding specificity. Biochemistry. Biokhimii͡A. 78: 726-35. PMID 24010836 DOI: 10.1134/S0006297913070055  1
2013 Lu Z, Rynkiewicz MJ, Yang CY, Madico G, Perkins HM, Wang Q, Costello CE, Zaia J, Seaton BA, Sharon J. The binding sites of monoclonal antibodies to the non-reducing end of Francisella tularensis O-antigen accommodate mainly the terminal saccharide. Immunology. 140: 374-89. PMID 23844703 DOI: 10.1111/imm.12150  1
2013 Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, et al. Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. Molecular & Cellular Proteomics : McP. 12: 2935-51. PMID 23764502 DOI: 10.1074/mcp.M113.030643  1
2013 Shi X, Shao C, Mao Y, Huang Y, Wu ZL, Zaia J. LC-MS and LC-MS/MS studies of incorporation of 34SO3 into glycosaminoglycan chains by sulfotransferases. Glycobiology. 23: 969-79. PMID 23696150 DOI: 10.1093/glycob/cwt033  1
2013 Shao C, Shi X, White M, Huang Y, Hartshorn K, Zaia J. Comparative glycomics of leukocyte glycosaminoglycans. The Febs Journal. 280: 2447-61. PMID 23480678 DOI: 10.1111/febs.12231  1
2013 Zaia J. Capillary electrophoresis-mass spectrometry of carbohydrates. Methods in Molecular Biology (Clifton, N.J.). 984: 13-25. PMID 23386333 DOI: 10.1007/978-1-62703-296-4_2  1
2013 Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data. Molecular & Cellular Proteomics : McP. 12: 991-5. PMID 23378518 DOI: 10.1074/mcp.O112.026492  1
2013 Zaia J. Glycosaminoglycan glycomics using mass spectrometry. Molecular & Cellular Proteomics : McP. 12: 885-92. PMID 23325770 DOI: 10.1074/mcp.R112.026294  1
2013 Gill VL, Aich U, Rao S, Pohl C, Zaia J. Disaccharide analysis of glycosaminoglycans using hydrophilic interaction chromatography and mass spectrometry. Analytical Chemistry. 85: 1138-45. PMID 23234263 DOI: 10.1021/ac3030448  1
2012 Maxwell E, Tan Y, Tan Y, Hu H, Benson G, Aizikov K, Conley S, Staples GO, Slysz GW, Smith RD, Zaia J. GlycReSoft: a software package for automated recognition of glycans from LC/MS data. Plos One. 7: e45474. PMID 23049804 DOI: 10.1371/journal.pone.0045474  1
2012 Li L, Zhang F, Zaia J, Linhardt RJ. Top-down approach for the direct characterization of low molecular weight heparins using LC-FT-MS. Analytical Chemistry. 84: 8822-9. PMID 22985071 DOI: 10.1021/ac302232c  1
2012 Gill VL, Wang Q, Shi X, Zaia J. Mass spectrometric method for determining the uronic acid epimerization in heparan sulfate disaccharides generated using nitrous acid. Analytical Chemistry. 84: 7539-46. PMID 22873817 DOI: 10.1021/ac3016054  1
2012 Tran TH, Shi X, Zaia J, Ai X. Heparan sulfate 6-O-endosulfatases (Sulfs) coordinate the Wnt signaling pathways to regulate myoblast fusion during skeletal muscle regeneration. The Journal of Biological Chemistry. 287: 32651-64. PMID 22865881 DOI: 10.1074/jbc.M112.353243  1
2012 Shi X, Huang Y, Mao Y, Naimy H, Zaia J. Tandem mass spectrometry of heparan sulfate negative ions: sulfate loss patterns and chemical modification methods for improvement of product ion profiles. Journal of the American Society For Mass Spectrometry. 23: 1498-511. PMID 22825743 DOI: 10.1007/s13361-012-0429-4  1
2012 Leymarie N, McComb ME, Naimy H, Staples GO, Zaia J. Differential Characterization and Classification of Tissue Specific Glycosaminoglycans by Tandem Mass Spectrometry and Statistical Methods. International Journal of Mass Spectrometry. 312: 144-154. PMID 22523474 DOI: 10.1016/j.ijms.2011.07.019  1
2012 Lu Z, Madico G, Roche MI, Wang Q, Hui JH, Perkins HM, Zaia J, Costello CE, Sharon J. Protective B-cell epitopes of Francisella tularensis O-polysaccharide in a mouse model of respiratory tularaemia. Immunology. 136: 352-60. PMID 22486311 DOI: 10.1111/j.1365-2567.2012.03589.x  1
2012 Leymarie N, Zaia J. Effective use of mass spectrometry for glycan and glycopeptide structural analysis. Analytical Chemistry. 84: 3040-8. PMID 22360375 DOI: 10.1021/ac3000573  1
2012 Thelin MA, Svensson KJ, Shi X, Bagher M, Axelsson J, Isinger-Ekstrand A, van Kuppevelt TH, Johansson J, Nilbert M, Zaia J, Belting M, Maccarana M, Malmström A. Dermatan sulfate is involved in the tumorigenic properties of esophagus squamous cell carcinoma. Cancer Research. 72: 1943-52. PMID 22350411 DOI: 10.1158/0008-5472.CAN-11-1351  0.56
2011 Staples GO, Zaia J. Analysis of Glycosaminoglycans Using Mass Spectrometry. Current Proteomics. 8: 325-336. PMID 25705143 DOI: 10.2174/157016411798220871  1
2011 Wang Q, Shi X, Leymarie N, Madico G, Sharon J, Costello CE, Zaia J. A typical preparation of Francisella tularensis O-antigen yields a mixture of three types of saccharides. Biochemistry. 50: 10941-50. PMID 22091710 DOI: 10.1021/bi201450v  1
2011 Crouch E, Nikolaidis N, McCormack FX, McDonald B, Allen K, Rynkiewicz MJ, Cafarella TM, White M, Lewnard K, Leymarie N, Zaia J, Seaton BA, Hartshorn KL. Mutagenesis of surfactant protein D informed by evolution and x-ray crystallography enhances defenses against influenza A virus in vivo. The Journal of Biological Chemistry. 286: 40681-92. PMID 21965658 DOI: 10.1074/jbc.M111.300673  1
2011 Huang Y, Shi X, Yu X, Leymarie N, Staples GO, Yin H, Killeen K, Zaia J. Improved liquid chromatography-MS/MS of heparan sulfate oligosaccharides via chip-based pulsed makeup flow. Analytical Chemistry. 83: 8222-9. PMID 21923145 DOI: 10.1021/ac201964n  1
2011 Bielik AM, Zaia J. Multistage Tandem Mass Spectrometry of Chondroitin Sulfate and Dermatan Sulfate. International Journal of Mass Spectrometry. 305: 131-137. PMID 21860601 DOI: 10.1016/j.ijms.2010.10.017  1
2011 Schumacher VA, Schlötzer-Schrehardt U, Karumanchi SA, Shi X, Zaia J, Jeruschke S, Zhang D, Pavenstädt H, Pavenstaedt H, Drenckhan A, Amann K, Ng C, Hartwig S, Ng KH, Ho J, et al. WT1-dependent sulfatase expression maintains the normal glomerular filtration barrier. Journal of the American Society of Nephrology : Jasn. 22: 1286-96. PMID 21719793 DOI: 10.1681/ASN.2010080860  1
2011 Naimy H, Buczek-Thomas JA, Nugent MA, Leymarie N, Zaia J. Highly sulfated nonreducing end-derived heparan sulfate domains bind fibroblast growth factor-2 with high affinity and are enriched in biologically active fractions. The Journal of Biological Chemistry. 286: 19311-9. PMID 21471211 DOI: 10.1074/jbc.M110.204693  1
2011 Staples GO, Shi X, Zaia J. Glycomics analysis of mammalian heparan sulfates modified by the human extracellular sulfatase HSulf2. Plos One. 6: e16689. PMID 21347431 DOI: 10.1371/journal.pone.0016689  1
2011 Zaia J. At last, functional glycomics. Nature Methods. 8: 55-7. PMID 21191374 DOI: 10.1038/nmeth0111-55  1
2011 Dreyfuss JM, Jacobs C, Gindin Y, Benson G, Staples GO, Zaia J. Targeted analysis of glycomics liquid chromatography/mass spectrometry data. Analytical and Bioanalytical Chemistry. 399: 727-35. PMID 20953780 DOI: 10.1007/s00216-010-4235-1  1
2011 Langsdorf A, Schumacher V, Shi X, Tran T, Zaia J, Jain S, Taglienti M, Kreidberg JA, Fine A, Ai X. Expression regulation and function of heparan sulfate 6-O-endosulfatases in the spermatogonial stem cell niche. Glycobiology. 21: 152-61. PMID 20855470 DOI: 10.1093/glycob/cwq133  1
2011 Staples GO, Zaia J. Mass Spectrometry in Carbohydrate Sequencing and Binding Analysis Carbohydrate Recognition: Biological Problems, Methods, and Applications. 257-300. DOI: 10.1002/9781118017586.ch11  1
2010 Zaia J. Mass spectrometry and glycomics. Omics : a Journal of Integrative Biology. 14: 401-18. PMID 20443730 DOI: 10.1089/omi.2009.0146  1
2010 Staples GO, Shi X, Zaia J. Extended N-sulfated domains reside at the nonreducing end of heparan sulfate chains. The Journal of Biological Chemistry. 285: 18336-43. PMID 20363743 DOI: 10.1074/jbc.M110.101592  1
2010 Naimy H, Leymarie N, Zaia J. Screening for anticoagulant heparan sulfate octasaccharides and fine structure characterization using tandem mass spectrometry. Biochemistry. 49: 3743-52. PMID 20345121 DOI: 10.1021/bi100135d  1
2010 Bowman MJ, Zaia J. Comparative glycomics using a tetraplex stable-isotope coded tag. Analytical Chemistry. 82: 3023-31. PMID 20230064 DOI: 10.1021/ac100108w  1
2010 Staples GO, Naimy H, Yin H, Kileen K, Kraiczek K, Costello CE, Zaia J. Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow. Analytical Chemistry. 82: 516-22. PMID 20000724 DOI: 10.1021/ac901706f  1
2010 Bielik AM, Zaia J. Extraction of chondroitin/dermatan sulfate glycosaminoglycans from connective tissue for mass spectrometric analysis. Methods in Molecular Biology (Clifton, N.J.). 600: 215-25. PMID 19882131 DOI: 10.1007/978-1-60761-454-8_15  1
2010 Bielik AM, Zaia J. Historical overview of glycoanalysis. Methods in Molecular Biology (Clifton, N.J.). 600: 9-30. PMID 19882118 DOI: 10.1007/978-1-60761-454-8_2  1
2009 Shi X, Zaia J. Organ-specific heparan sulfate structural phenotypes. The Journal of Biological Chemistry. 284: 11806-14. PMID 19244235 DOI: 10.1074/jbc.M809637200  1
2009 Staples GO, Bowman MJ, Costello CE, Hitchcock AM, Lau JM, Leymarie N, Miller C, Naimy H, Shi X, Zaia J. A chip-based amide-HILIC LC/MS platform for glycosaminoglycan glycomics profiling. Proteomics. 9: 686-95. PMID 19137549 DOI: 10.1002/pmic.200701008  1
2009 Zaia J. On-line separations combined with MS for analysis of glycosaminoglycans. Mass Spectrometry Reviews. 28: 254-72. PMID 18956477 DOI: 10.1002/mas.20200  1
2009 Zaia J, Shi X. Reply to Savolainen: Organ- and cell-specific GAG chains Journal of Biological Chemistry. 284. DOI: 10.1074/jbc.N809637200  1
2008 Hitchcock AM, Bowman MJ, Staples GO, Zaia J. Improved workup for glycosaminoglycan disaccharide analysis using CE with LIF detection. Electrophoresis. 29: 4538-48. PMID 19035406 DOI: 10.1002/elps.200800335  1
2008 Zaia J. Mass spectrometry and the emerging field of glycomics. Chemistry & Biology. 15: 881-92. PMID 18804025 DOI: 10.1016/j.chembiol.2008.07.016  1
2008 Hitchcock AM, Yates KE, Costello CE, Zaia J. Comparative glycomics of connective tissue glycosaminoglycans. Proteomics. 8: 1384-97. PMID 18318007 DOI: 10.1002/pmic.200700787  1
2008 Naimy H, Leymarie N, Bowman MJ, Zaia J. Characterization of heparin oligosaccharides binding specifically to antithrombin III using mass spectrometry. Biochemistry. 47: 3155-61. PMID 18260648 DOI: 10.1021/bi702043e  1
2007 Bowman MJ, Zaia J. Tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry. Analytical Chemistry. 79: 5777-84. PMID 17605469 DOI: 10.1021/ac070581b  1
2007 Zaia J, Miller MJ, Seymour JL, Costello CE. The role of mobile protons in negative ion CID of oligosaccharides. Journal of the American Society For Mass Spectrometry. 18: 952-60. PMID 17383193 DOI: 10.1016/j.jasms.2007.01.016  1
2007 Hitchcock AM, Yates KE, Shortkroff S, Costello CE, Zaia J. Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling. Glycobiology. 17: 25-35. PMID 16980326 DOI: 10.1093/glycob/cwl046  1
2006 Ziegler A, Zaia J. Size-exclusion chromatography of heparin oligosaccharides at high and low pressure. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 837: 76-86. PMID 16704936 DOI: 10.1016/j.jchromb.2006.04.013  1
2006 Seymour JL, Costello CE, Zaia J. The influence of sialylation on glycan negative ion dissociation and energetics. Journal of the American Society For Mass Spectrometry. 17: 844-54. PMID 16603372 DOI: 10.1016/j.jasms.2006.02.022  1
2006 Miller MJ, Costello CE, Malmström A, Zaia J. A tandem mass spectrometric approach to determination of chondroitin/dermatan sulfate oligosaccharide glycoforms. Glycobiology. 16: 502-13. PMID 16489125 DOI: 10.1093/glycob/cwj093  1
2006 Hitchcock AM, Costello CE, Zaia J. Glycoform quantification of chondroitin/dermatan sulfate using a liquid chromatography-tandem mass spectrometry platform. Biochemistry. 45: 2350-61. PMID 16475824 DOI: 10.1021/bi052100t  1
2004 Naggar EF, Costello CE, Zaia J. Competing fragmentation processes in tandem mass spectra of heparin-like glycosaminoglycans. Journal of the American Society For Mass Spectrometry. 15: 1534-44. PMID 15519220 DOI: 10.1016/j.jasms.2004.06.019  1
2004 Zaia J. Mass spectrometry of oligosaccharides. Mass Spectrometry Reviews. 23: 161-227. PMID 14966796 DOI: 10.1002/mas.10073  1
2003 Zaia J, Li XQ, Chan SY, Costello CE. Tandem mass spectrometric strategies for determination of sulfation positions and uronic acid epimerization in chondroitin sulfate oligosaccharides. Journal of the American Society For Mass Spectrometry. 14: 1270-81. PMID 14597117 DOI: 10.1016/S1044-0305(03)00541-5  1
2003 Zaia J, Costello CE. Tandem mass spectrometry of sulfated heparin-like glycosaminoglycan oligosaccharides. Analytical Chemistry. 75: 2445-55. PMID 12918989 DOI: 10.1021/ac0263418  1
2002 McClellan JE, Costello CE, O'Connor PB, Zaia J. Influence of charge state on product ion mass spectra and the determination of 4S/6S sulfation sequence of chondroitin sulfate oligosaccharides. Analytical Chemistry. 74: 3760-71. PMID 12175164  0.56
2002 McClellan JE, Costello CE, O'Connor PB, Zaia J. Influence of charge state on product ion mass spectra and the determination of 4S/6S sulfation sequence of chondroitin sulfate oligosaccharides Analytical Chemistry. 74: 3760-3771. DOI: 10.1021/ac025506+  1
2002 Zaia J, Costello CE. Tandem mass spectrometric sequencing of heparin and heparan sulfate oligosaccharides Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 67-68.  1
2002 McClellan JE, Lim A, Costello CE, Zaia J. Detailed molecular characterization of the glycosylation pattern on the hyaluronan-binding region of aggrecan by MALDI and ESI mass spectrometry Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 461-462.  1
2001 Zaia J, McClellan JE, Costello CE. Tandem mass spectrometric determination of the 4S/6S sulfation sequence in chondroitin sulfate oligosaccharides Analytical Chemistry. 73: 6030-6039. PMID 11791576 DOI: 10.1021/ac015577t  1
2001 Barry F, Boynton R, Murphy M, Zaia J. The SH-3 and SH-4 antibodies recognize distinct epitopes on CD73 from human mesenchymal stem cells Biochemical and Biophysical Research Communications. 289: 519-524. PMID 11716504 DOI: 10.1006/bbrc.2001.6013  1
2001 Zaia J, Boynton R, Heinegård D, Barry F. Posttranslational modifications to human bone sialoprotein determined by mass spectrometry Biochemistry. 40: 12983-12991. PMID 11669636 DOI: 10.1021/bi010887r  1
2001 Zaia J, Costello CE. Compositional analysis of glycosaminoglycans by electrospray mass spectrometry Analytical Chemistry. 73: 233-239. PMID 11199971 DOI: 10.1021/ac000777a  1
2000 Cheng X, Cole RN, Zaia J, Hart GW. Alternative O-glycosylation/O-phosphorylation of the murine estrogen receptor β Biochemistry. 39: 11609-11620. PMID 10995228 DOI: 10.1021/bi000755i  1
2000 Zaia J, Liu B, Boynton R, Barry F. Structural analysis of cartilage proteoglycans and glycoproteins using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Analytical Biochemistry. 277: 94-103. PMID 10610693 DOI: 10.1006/abio.1999.4379  1
1999 Barry FP, Boynton RE, Haynesworth S, Murphy JM, Zaia J. The monoclonal antibody SH-2, raised against human mesenchymal stem cells, recognizes an epitope on endoglin (CD105). Biochemical and Biophysical Research Communications. 265: 134-9. PMID 10548503 DOI: 10.1006/bbrc.1999.1620  1
1998 Zaia J, Fabris D, Wei D, Karpel RL, Fenselau C. Monitoring metal ion flux in reactions of metallothionein and drug- modified metallothionein by electrospray mass spectrometry Protein Science. 7: 2398-2404. PMID 9828006  1
1998 Van Den Bos C, Rammes A, Vogl T, Boynton R, Zaia J, Sorg C, Roth J. Copurification of P6, MRP8, and MRP14 from human granulocytes and separation of individual proteins Protein Expression and Purification. 13: 313-318. PMID 9693055 DOI: 10.1006/prep.1998.0917  1
1998 Bruder SP, Ricalton NS, Boynton RE, Connolly TJ, Jaiswal N, Zaia J, Barry FP. Mesenchymal stem cell surface antigen SB-10 corresponds to activated leukocyte cell adhesion molecule and is involved in osteogenic differentiation. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 13: 655-63. PMID 9556065 DOI: 10.1359/jbmr.1998.13.4.655  1
1997 Zaia J, Boynton RE, McIntosh A, Marshak DR, Olsson H, Heinegârd D, Barry FP. Post-translational modifications in cartilage oligomeric matrix protein. Characterization of the N-linked oligosaccharides by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. The Journal of Biological Chemistry. 272: 14120-6. PMID 9162039 DOI: 10.1074/jbc.272.22.14120  1
1996 Zaia J. Charged derivatives for peptide sequencing using a magnetic sector instrument Methods in Molecular Biology (Clifton, N.J.). 61: 29-41. PMID 8930863  1
1996 Zaia J, Jiang L, Han MS, Tabb JR, Wu Z, Fabris D, Fenselau C. A binding site for chlorambucil on metallothionein Biochemistry. 35: 2830-2835. PMID 8608118 DOI: 10.1021/bi952243n  1
1996 Fabris D, Zaia J, Hathout Y, Fenselau C. Retention of thiol protons in two classes of protein zinc ion coordination centers Journal of the American Chemical Society. 118: 12242-12243. DOI: 10.1021/ja962863r  1
1995 Zaia J, Biemann K. Comparison of charged derivatives for high energy collision-induced dissociation tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 6: 428-36. PMID 24214224 DOI: 10.1016/1044-0305(95)00018-9  1
1994 Zaia J, Biemann K. Characteristics of high energy collision-induced dissociation tandem Mass Spectra of Polycyclic aromatic Hydrocarbon diolepoxide adducted peptides. Journal of the American Society For Mass Spectrometry. 5: 649-54. PMID 24221967 DOI: 10.1016/1044-0305(94)85006-2  1
1994 Day BW, Skipper PL, Zaia J, Singh K, Tannenbaum SR. Enantiospecificity of covalent adduct formation by benzo[a]pyrene anti-diol epoxide with human serum albumin. Chemical Research in Toxicology. 7: 829-35. PMID 7696539  1
1994 Zaia J, Biemann K. Proteinase K activity inhibited near amino acids carrying large substituents: Three PAH diolepoxides covalently modify His-146 human serum albumin residue Journal of the American Chemical Society. 116: 7407-7408.  1
1992 Zaia J, Annan RS, Biemann K. The correct molecular weight of myoglobin, a common calibrant for mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 6: 32-6. PMID 1591398 DOI: 10.1002/rcm.1290060108  1
1991 Day BW, Skipper PL, Zaia J, Tannenbaum SR. Benzo[a]pyrene anti-diol epoxide covalently modifies human serum albumin carboxylate side chains and imidazole side chain of histidine(146) Journal of the American Chemical Society. 113: 8505-8509.  1
1987 Nicholson-Weller A, Zaia J, Raum MG, Coligan JE. Decay accelerating factor (DAF) peptide sequences share homology with a consensus sequence found in the superfamily of structurally related complement proteins and other proteins including haptoglobin, factor XIII, β2-glycoprotein I, and the IL-2 receptor Immunology Letters. 14: 307-311. PMID 2438213 DOI: 10.1016/0165-2478(87)90010-1  1
1987 Wenzel TJ, Zaia J. Organic-soluble lanthanide nuclear magnetic resonance shift reagents for sulfonium and isothiouronium salts Analytical Chemistry. 59: 562-567.  1
1985 Wenzel TJ, Zaia J. Lanthanide tetrakis(β-diketonates) as effective NMR shift reagents for organic salts Journal of Organic Chemistry. 50: 1322-1324.  1
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