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Judy E. Kim - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Spectroscopic studies of membrane protein folding and dynamics
Website:
http://www-chem.ucsd.edu/faculty/profiles/kim_judy_e.html

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Luz J, Beigneux AP, Asamoto DK, He C, Song W, Allan CM, Morales JE, Tu Y, Kwok A, Cottle T, Meiyappan M, Fong LG, Kim J, Ploug M, Young SG, et al. The structural basis for monoclonal antibody 5D2 binding to the tryptophan-rich loop of lipoprotein lipase. Journal of Lipid Research. PMID 32690595 DOI: 10.1194/jlr.RA120000993  0.72
2019 Asamoto DK, Kang G, Kim JE. Folding of the β-Barrel Membrane Protein OmpA into Nanodiscs. Biophysical Journal. PMID 31843264 DOI: 10.1016/j.bpj.2019.11.3381  0.72
2019 Rivera JJ, Liang JH, Shimamura GR, Shafaat HS, Kim JE. Raman and Quantum Yield Studies of Trp48- in Azurin: Closed-Shell and Neutral Radical Species. The Journal of Physical Chemistry. B. PMID 31313925 DOI: 10.1021/acs.jpcb.9b04655  0.92
2019 Asamoto DK, Kim JE. UV Resonance Raman Spectroscopy as a Tool to Probe Membrane Protein Structure and Dynamics. Methods in Molecular Biology (Clifton, N.J.). 2003: 327-349. PMID 31218624 DOI: 10.1007/978-1-4939-9512-7_14  0.72
2015 López-Peña I, Leigh BS, Schlamadinger DE, Kim JE. Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy. Biochemistry. PMID 26219819 DOI: 10.1021/acs.biochem.5b00514  1
2015 Aaltonen T, Amerio S, Amidei D, Anastassov A, Annovi A, Antos J, Apollinari G, Appel JA, Arisawa T, Artikov A, Asaadi J, Ashmanskas W, Auerbach B, Aurisano A, Azfar F, ... ... Kim JE, et al. Constraints on models of the Higgs boson with exotic spin and parity using decays to bottom-antibottom quarks in the full CDF data set. Physical Review Letters. 114: 141802. PMID 25910110 DOI: 10.1103/PhysRevLett.114.141802  0.01
2015 Larson BC, Pomponio JR, Shafaat HS, Kim RH, Leigh BS, Tauber MJ, Kim JE. Photogeneration and Quenching of Tryptophan Radical in Azurin. The Journal of Physical Chemistry. B. PMID 25625660 DOI: 10.1021/jp511523z  1
2014 Shafaat HS, Kim JE. Resonance Raman Analysis of the Tryptophan Cation Radical. The Journal of Physical Chemistry Letters. 5: 3009-14. PMID 26278252 DOI: 10.1021/jz5012324  0.92
2014 Armijo G, Okerblom J, Cauvi DM, Lopez V, Schlamadinger DE, Kim J, Arispe N, De Maio A. Interaction of heat shock protein 70 with membranes depends on the lipid environment. Cell Stress & Chaperones. 19: 877-86. PMID 24789271 DOI: 10.1007/s12192-014-0511-x  1
2014 Shafaat HS, Kim JE. Resonance Raman analysis of the tryptophan cation radical Journal of Physical Chemistry Letters. 5: 3009-3014. DOI: 10.1021/jz5012324  1
2014 Leigh BS, Schlamadinger DE, Kim JE. Structures and Dynamics of Proteins Probed by UV Resonance Raman Spectroscopy Biophysical Methods For Biotherapeutics: Discovery and Development Applications. 243-268. DOI: 10.1002/9781118354698.ch9  1
2012 Schlamadinger DE, Leigh BS, Kim JE. UV resonance Raman study of TrpZip2 and related peptides: π-π interactions of tryptophan. Journal of Raman Spectroscopy : Jrs. 43: 1459-1464. PMID 25525290 DOI: 10.1002/jrs.4061  1
2012 Schlamadinger DE, Wang Y, McCammon JA, Kim JE. Spectroscopic and computational study of melittin, cecropin A, and the hybrid peptide CM15. The Journal of Physical Chemistry. B. 116: 10600-8. PMID 22845179 DOI: 10.1021/jp304021t  1
2012 Wang Y, Schlamadinger DE, Kim JE, McCammon JA. Comparative molecular dynamics simulations of the antimicrobial peptide CM15 in model lipid bilayers. Biochimica Et Biophysica Acta. 1818: 1402-9. PMID 22387432 DOI: 10.1016/j.bbamem.2012.02.017  1
2012 Kang G, López-Peña I, Oklejas V, Gary CS, Cao W, Kim JE. Förster resonance energy transfer as a probe of membrane protein folding. Biochimica Et Biophysica Acta. 1818: 154-61. PMID 21925139 DOI: 10.1016/j.bbamem.2011.08.029  1
2011 Schlamadinger DE, Daschbach MM, Gokel GW, Kim JE. UV resonance Raman study of cation-π interactions in an indole crown ether. Journal of Raman Spectroscopy : Jrs. 42: 633-638. PMID 25635155 DOI: 10.1002/jrs.2781  1
2011 Stoll S, Shafaat HS, Krzystek J, Ozarowski A, Tauber MJ, Kim JE, Britt RD. Hydrogen bonding of tryptophan radicals revealed by EPR at 700 GHz. Journal of the American Chemical Society. 133: 18098-101. PMID 22007694 DOI: 10.1021/ja208462t  1
2011 Macrae MX, Schlamadinger D, Kim JE, Mayer M, Yang J. Using charge to control the functional properties of self-assembled nanopores in membranes. Small (Weinheim An Der Bergstrasse, Germany). 7: 2016-20. PMID 21626687 DOI: 10.1002/smll.201100394  1
2011 Schlamadinger DE, Kim JE. Thermodynamics of membrane protein folding measured by fluorescence spectroscopy. Journal of Visualized Experiments : Jove. PMID 21559004 DOI: 10.3791/2669  1
2011 Sanchez KM, Kang G, Wu B, Kim JE. Tryptophan-lipid interactions in membrane protein folding probed by ultraviolet resonance Raman and fluorescence spectroscopy. Biophysical Journal. 100: 2121-30. PMID 21539779 DOI: 10.1016/j.bpj.2011.03.018  1
2010 Schlamadinger DE, Kats DI, Kim JE. Quenching of TryptophanFluorescence in Unfolded Cytochrome c: A Biophysics Experiment for Physical Chemistry Students. Journal of Chemical Education. 87: 961-964. PMID 25593364 DOI: 10.1021/ed900029c  1
2010 Shafaat HS, Leigh BS, Tauber MJ, Kim JE. Spectroscopic comparison of photogenerated tryptophan radicals in azurin: effects of local environment and structure. Journal of the American Chemical Society. 132: 9030-9. PMID 20536238 DOI: 10.1021/ja101322g  1
2010 Cogen AL, Yamasaki K, Muto J, Sanchez KM, Crotty Alexander L, Tanios J, Lai Y, Kim JE, Nizet V, Gallo RL. Staphylococcus epidermidis antimicrobial delta-toxin (phenol-soluble modulin-gamma) cooperates with host antimicrobial peptides to kill group A Streptococcus. Plos One. 5: e8557. PMID 20052280 DOI: 10.1371/journal.pone.0008557  1
2010 Cogen AL, Yamasaki K, Sanchez KM, Dorschner RA, Lai Y, MacLeod DT, Torpey JW, Otto M, Nizet V, Kim JE, Gallo RL. Selective antimicrobial action is provided by phenol-soluble modulins derived from Staphylococcus epidermidis, a normal resident of the skin. The Journal of Investigative Dermatology. 130: 192-200. PMID 19710683 DOI: 10.1038/jid.2009.243  1
2010 Schlamadinger DE, Shafaat HS, Sanchez KM, Gable JE, Kim JE. Tryptophan residues as membrane protein anchors Aip Conference Proceedings. 1267: 170-171. DOI: 10.1063/1.3482447  1
2009 Schlamadinger DE, Gable JE, Kim JE. Toxins and antimicrobial peptides: Interactions with membranes. Proceedings of Spie--the International Society For Optical Engineering. 7397. PMID 25593677 DOI: 10.1117/12.827439  1
2009 Gable JE, Schlamadinger DE, Cogen AL, Gallo RL, Kim JE. Fluorescence and UV resonance Raman study of peptide-vesicle interactions of human cathelicidin LL-37 and its F6W and F17W mutants. Biochemistry. 48: 11264-72. PMID 19894716 DOI: 10.1021/bi900996q  1
2009 Schlamadinger DE, Gable JE, Kim JE. Hydrogen bonding and solvent polarity markers in the uv resonance raman spectrum of tryptophan: application to membrane proteins. The Journal of Physical Chemistry. B. 113: 14769-78. PMID 19817473 DOI: 10.1021/jp905473y  1
2009 Tirrell TF, Paddock ML, Conlan AR, Smoll EJ, Nechushtai R, Jennings PA, Kim JE. Resonance Raman studies of the (His)(Cys)3 2Fe-2S cluster of MitoNEET: comparison to the (Cys)4 mutant and implications of the effects of pH on the labile metal center. Biochemistry. 48: 4747-52. PMID 19388667 DOI: 10.1021/bi900028r  1
2009 Shafaat HS, Leigh BS, Tauber MJ, Kim JE. Resonance Raman characterization of a stable tryptophan radical in an azurin mutant. The Journal of Physical Chemistry. B. 113: 382-8. PMID 19072535 DOI: 10.1021/jp809329a  1
2009 Shafaat HS, Sanchez KM, Neary TJ, Kim JE. Ultraviolet resonance Raman spectroscopy of a β-sheet peptide: A model for membrane protein folding Journal of Raman Spectroscopy. 40: 1060-1064. DOI: 10.1002/jrs.2237  1
2009 Kim JE. Optical techniques to probe protein dynamics Nature Chemical Biology. 5: 1P.  1
2008 Sanchez KM, Schlamadinger DE, Gable JE, Kim JE. Förster Resonance Energy Transfer and Conformational Stability of Proteins: An Advanced Biophysical Module for Physical Chemistry Students. Journal of Chemical Education. 85: 1253-1256. PMID 19756254  1
2008 Sanchez KM, Gable JE, Schlamadinger DE, Kim JE. Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: lessons from the transmembrane protein OmpA. Biochemistry. 47: 12844-52. PMID 18991402 DOI: 10.1021/bi800860k  1
2008 Babakhani A, Gorfe AA, Kim JE, McCammon JA. Thermodynamics of peptide insertion and aggregation in a lipid bilayer. The Journal of Physical Chemistry. B. 112: 10528-34. PMID 18681475 DOI: 10.1021/jp804710v  1
2008 Sanchez KM, Neary TJ, Kim JE. Ultraviolet resonance Raman spectroscopy of folded and unfolded states of an integral membrane protein. The Journal of Physical Chemistry. B. 112: 9507-11. PMID 18588328 DOI: 10.1021/jp800772j  1
2007 Babakhani A, Gorfe AA, Gullingsrud J, Kim JE, Andrew McCammon J. Peptide insertion, positioning, and stabilization in a membrane: insight from an all-atom molecular dynamics simulation. Biopolymers. 85: 490-7. PMID 17274025 DOI: 10.1002/bip.20698  1
2006 Kim JE, Arjara G, Richards JH, Gray HB, Winkler JR. Probing folded and unfolded states of outer membrane protein a with steady-state and time-resolved tryptophan fluorescence. The Journal of Physical Chemistry. B. 110: 17656-62. PMID 16942111 DOI: 10.1021/jp061991r  1
2006 Lee JC, Kim JE, Pletneva EV, Faraone-Mennella J, Gray HB, Winkler JR. Protein folding, misfolding, and disease Metal Ions in Life Sciences. 1: 9-60. DOI: 10.1002/0470028114.ch2  0.8
2004 Kim JE, Pribisko MA, Gray HB, Winkler JR. Zinc-porphyrin Solvation in folded and unfolded states of Zn-cytochrome c. Inorganic Chemistry. 43: 7953-60. PMID 15578829 DOI: 10.1021/ic048972l  1
2003 Kim JE, Pan D, Mathies RA. Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy. Biochemistry. 42: 5169-75. PMID 12731857 DOI: 10.1021/bi030026d  1
2003 Kim JE, Tauber MJ, Mathies RA. Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin. Biophysical Journal. 84: 2492-501. PMID 12668457 DOI: 10.1016/S0006-3495(03)75054-1  1
2002 McCamant DW, Kim JE, Mathies RA. Vibrational Relaxation in beta-Carotene Probed by Picosecond Stokes and Anti-Stokes Resonance Raman Spectroscopy. The Journal of Physical Chemistry. A. 106: 6030-8. PMID 17235377 DOI: 10.1021/jp0203595  1
2002 Kim JE, Mathies RA. Anti-stokes Raman study of vibrational cooling dynamics in the primary photochemistry of rhodopsin. The Journal of Physical Chemistry. A. 106: 8508-15. PMID 16552447 DOI: 10.1021/jp021069r  1
2002 Pan D, Ganim Z, Kim JE, Verhoeven MA, Lugtenburg J, Mathies RA. Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate. Journal of the American Chemical Society. 124: 4857-64. PMID 11971736 DOI: 10.1021/ja012666e  1
2001 Kim JE, McCamant DW, Zhu L, Mathies RA. Resonance Raman Structural Evidence that the Cis-to-Trans Isomerization in Rhodopsin Occurs in Femtoseconds. The Journal of Physical Chemistry. B. 105: 1240-9. PMID 16755302 DOI: 10.1021/jp001236s  1
2001 Kim JE, Tauber MJ, Mathies RA. Wavelength dependent cis-trans isomerization in vision. Biochemistry. 40: 13774-8. PMID 11705366 DOI: 10.1021/bi0116137  1
1999 Zhu L, Kim J, Mathies RA. Picosecond time-resolved Raman system for studying photochemical reaction dynamics: application to the primary events in vision Journal of Raman Spectroscopy. 30: 777-783. DOI: 10.1002/(SICI)1097-4555(199909)30:9<777::AID-JRS449>3.0.CO;2-C  1
1999 Zhu L, Kim J, Mathies RA. Picosecond time-resolved Raman system for studying photochemical reaction dynamics: Application to the primary events in vision Journal of Raman Spectroscopy. 30: 777-783.  1
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