| Year |
Citation |
Score |
| 2024 |
Moth CW, Sheehan JH, Mamun AA, Sivley RM, Gulsevin A, Rinker D, Capra JA, Meiler J. VUStruct: a compute pipeline for high throughput and personalized structural biology. Biorxiv : the Preprint Server For Biology. PMID 39149406 DOI: 10.1101/2024.08.06.606224 |
0.612 |
|
| 2024 |
Woods H, Leman JK, Meiler J. Modeling membrane geometries implicitly in Rosetta. Protein Science : a Publication of the Protein Society. 33: e4908. PMID 38358133 DOI: 10.1002/pro.4908 |
0.716 |
|
| 2024 |
Melancon K, Pliushcheuskaya P, Meiler J, Künze G. Targeting ion channels with ultra-large library screening for hit discovery. Frontiers in Molecular Neuroscience. 16: 1336004. PMID 38249296 DOI: 10.3389/fnmol.2023.1336004 |
0.761 |
|
| 2023 |
Sekar TV, Elghonaimy EA, Swancutt KL, Diegeler S, Gonzalez I, Hamilton C, Leung PQ, Meiler J, Martina CE, Whitney M, Aguilera TA. Simultaneous selection of nanobodies for accessible epitopes on immune cells in the tumor microenvironment. Nature Communications. 14: 7473. PMID 37978291 DOI: 10.1038/s41467-023-43038-z |
0.774 |
|
| 2023 |
Marin A, Mamun AA, Patel H, Akamatsu H, Ye D, Sudhan DR, Eli L, Marcelain K, Brown BP, Meiler J, Arteaga CL, Hanker AB. Acquired secondary HER2 mutations enhance HER2/MAPK signaling and promote resistance to HER2 kinase inhibition in breast cancer. Cancer Research. PMID 37404061 DOI: 10.1158/0008-5472.CAN-22-3617 |
0.551 |
|
| 2023 |
Martina CE, Crowe JE, Meiler J. Glycan masking in vaccine design: Targets, immunogens and applications. Frontiers in Immunology. 14: 1126034. PMID 37033915 DOI: 10.3389/fimmu.2023.1126034 |
0.763 |
|
| 2023 |
Ledwitch KV, Künze G, McKinney JR, Okwei E, Larochelle K, Pankewitz L, Ganguly S, Darling HL, Coin I, Meiler J. Sparse pseudocontact shift NMR data obtained from a non-canonical amino acid-linked lanthanide tag improves integral membrane protein structure prediction. Journal of Biomolecular Nmr. PMID 37016190 DOI: 10.1007/s10858-023-00412-9 |
0.543 |
|
| 2023 |
Okwei E, Smith ST, Bender BJ, Allison B, Ganguly S, Geanes A, Zhang X, Ledwitch K, Meiler J. Rosetta's Predictive Ability for Low-Affinity Ligand Binding in Fragment-Based Drug Discovery. Biochemistry. PMID 36626571 DOI: 10.1021/acs.biochem.2c00649 |
0.51 |
|
| 2022 |
Schoeder CT, Gilchuk P, Sangha AK, Ledwitch KV, Malherbe DC, Zhang X, Binshtein E, Williamson LE, Martina CE, Dong J, Armstrong E, Sutton R, Nargi R, Rodriguez J, Kuzmina N, ... ... Meiler J, et al. Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region. Plos Pathogens. 18: e1010518. PMID 35584193 DOI: 10.1371/journal.ppat.1010518 |
0.782 |
|
| 2022 |
Borza CM, Bolas G, Zhang X, Browning Monroe MB, Zhang MZ, Meiler J, Skwark MJ, Harris RC, Lapierre LA, Goldenring JR, Hook M, Rivera J, Brown KL, Leitinger B, Tyska MJ, et al. The Collagen Receptor Discoidin Domain Receptor 1b Enhances Integrin β1-Mediated Cell Migration by Interacting With Talin and Promoting Rac1 Activation. Frontiers in Cell and Developmental Biology. 10: 836797. PMID 35309920 DOI: 10.3389/fcell.2022.836797 |
0.681 |
|
| 2021 |
Koehler Leman J, Lyskov S, Lewis SM, Adolf-Bryfogle J, Alford RF, Barlow K, Ben-Aharon Z, Farrell D, Fell J, Hansen WA, Harmalkar A, Jeliazkov J, Kuenze G, Krys JD, Ljubetič A, ... ... Meiler J, et al. Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks. Nature Communications. 12: 6947. PMID 34845212 DOI: 10.1038/s41467-021-27222-7 |
0.78 |
|
| 2021 |
Schoeder CT, Schmitz S, Adolf-Bryfogle J, Sevy AM, Finn JA, Sauer MF, Bozhanova NG, Mueller BK, Sangha AK, Bonet J, Sheehan JH, Kuenze G, Marlow B, Smith ST, Woods H, ... ... Meiler J, et al. Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design. Biochemistry. PMID 33705117 DOI: 10.1021/acs.biochem.0c00912 |
0.785 |
|
| 2020 |
Gulsevin A, Meiler J. An Investigation of Three-Finger Toxin-nAChR Interactions through Rosetta Protein Docking. Toxins. 12. PMID 32947868 DOI: 10.20944/Preprints202008.0318.V1 |
0.307 |
|
| 2020 |
Finn JA, Dong J, Sevy AM, Parrish E, Gilchuk I, Nargi R, Scarlett-Jones M, Reichard W, Bombardi R, Voss TG, Meiler J, Crowe JE. Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring. Structure (London, England : 1993). PMID 32783953 DOI: 10.1016/J.Str.2020.07.012 |
0.307 |
|
| 2020 |
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, ... ... Meiler J, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods. PMID 32483333 DOI: 10.1038/S41592-020-0848-2 |
0.738 |
|
| 2020 |
Seacrist CD, Kuenze G, Hoffmann RM, Moeller BE, Burke JE, Meiler J, Blind RD. Integrated Structural Modeling of Full-Length LRH-1 Reveals Inter-domain Interactions Contribute to Receptor Structure and Function. Structure (London, England : 1993). PMID 32433991 DOI: 10.1016/J.Str.2020.04.020 |
0.308 |
|
| 2020 |
Koehler Leman J, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, ... ... Meiler J, et al. Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507. PMID 32365137 DOI: 10.1371/Journal.Pcbi.1007507 |
0.774 |
|
| 2020 |
Sauer MF, Sevy AM, Crowe JE, Meiler J. Multi-state design of flexible proteins predicts sequences optimal for conformational change. Plos Computational Biology. 16: e1007339. PMID 32032348 DOI: 10.1371/Journal.Pcbi.1007339 |
0.318 |
|
| 2020 |
Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF. Comparative modeling and docking of chemokine-receptor interactions with Rosetta. Biochemical and Biophysical Research Communications. PMID 31924303 DOI: 10.1016/J.Bbrc.2019.12.076 |
0.322 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Members of the RosettaCommons Consortium. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S009 |
0.736 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Details of Remaining Collective Challenges. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S008 |
0.748 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Commercial spin-off companies from the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S007 |
0.741 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Values Statement: Equality and Inclusion in the RosettaCommons. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S005 |
0.727 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Descriptions of the Rosetta board positions. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S004 |
0.735 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Typical development workflow in the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S003 |
0.751 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Specific tests for Rosetta running on our automated testing framework. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S002 |
0.741 |
|
| 2020 |
Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, ... ... Meiler J, et al. Growth in Rosetta PIs and conference attendees. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S001 |
0.73 |
|
| 2019 |
Del Alamo D, Tessmer MH, Stein RA, Feix JB, Mchaourab HS, Meiler J. Rapid Simulation of Unprocessed DEER Decay Data for Protein Fold Prediction. Biophysical Journal. PMID 31892409 DOI: 10.1016/J.Bpj.2019.12.011 |
0.35 |
|
| 2019 |
Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, ... ... Meiler J, et al. Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure (London, England : 1993). PMID 31780431 DOI: 10.1016/J.Str.2019.11.002 |
0.323 |
|
| 2019 |
Kuenze G, Bonneau R, Leman JK, Meiler J. Integrative Protein Modeling in RosettaNMR from Sparse Paramagnetic Restraints. Structure (London, England : 1993). PMID 31522945 DOI: 10.1016/J.Str.2019.08.012 |
0.792 |
|
| 2019 |
Kuenze G, Duran AM, Woods H, Brewer KR, McDonald EF, Vanoye CG, George AL, Sanders CR, Meiler J. Upgraded molecular models of the human KCNQ1 potassium channel. Plos One. 14: e0220415. PMID 31518351 DOI: 10.1371/Journal.Pone.0220415 |
0.319 |
|
| 2019 |
Li B, Mendenhall J, Meiler J. Interfaces Between Alpha-helical Integral Membrane Proteins: Characterization, Prediction, and Docking. Computational and Structural Biotechnology Journal. 17: 699-711. PMID 31303974 DOI: 10.1016/J.Csbj.2019.05.005 |
0.352 |
|
| 2019 |
Kuenze G, Meiler J. Protein structure prediction using sparse NOE and RDC restraints with Rosetta in CASP13. Proteins. PMID 31292988 DOI: 10.1002/Prot.25769 |
0.372 |
|
| 2019 |
Xia Y, Ledwitch K, Kuenze G, Duran A, Li J, Sanders CR, Manning C, Meiler J. A unified structural model of the mammalian translocator protein (TSPO). Journal of Biomolecular Nmr. PMID 31243635 DOI: 10.1007/S10858-019-00257-1 |
0.349 |
|
| 2019 |
Brown B, Mendenhall JL, Meiler J. BCL::MolAlign: Three-Dimensional Small Molecule Alignment for Pharmacophore Mapping. Journal of Chemical Information and Modeling. PMID 30707580 DOI: 10.1021/Acs.Jcim.9B00020 |
0.316 |
|
| 2019 |
Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF. Modeling the complete chemokine-receptor interaction. Methods in Cell Biology. 149: 289-314. PMID 30616825 DOI: 10.1016/Bs.Mcb.2018.09.005 |
0.313 |
|
| 2018 |
Bender BJ, Vortmeier G, Ernicke S, Bosse M, Kaiser A, Els-Heindl S, Krug U, Beck-Sickinger A, Meiler J, Huster D. Structural Model of Ghrelin Bound to its G Protein-Coupled Receptor. Structure (London, England : 1993). PMID 30686667 DOI: 10.1016/J.Str.2018.12.004 |
0.311 |
|
| 2018 |
Bhate MP, Lemmin T, Kuenze G, Mensa B, Ganguly S, Peters J, Schmidt N, Pelton JG, Gross C, Meiler J, DeGrado WF. Structure and function of the transmembrane domain of NsaS, an antibiotic sensing histidine kinase in S. aureus. Journal of the American Chemical Society. PMID 29771498 DOI: 10.1021/Jacs.7B09670 |
0.559 |
|
| 2018 |
Combs SA, Mueller BK, Meiler J. Holistic Approach to Partial Covalent Interactions in Protein Structure Prediction and Design with Rosetta. Journal of Chemical Information and Modeling. PMID 29641200 DOI: 10.1021/Acs.Jcim.7B00398 |
0.315 |
|
| 2018 |
Xia Y, Fischer AW, Teixeira P, Weiner B, Meiler J. Integrated Structural Biology for α-Helical Membrane Protein Structure Determination. Structure (London, England : 1993). PMID 29526436 DOI: 10.1016/J.Str.2018.02.006 |
0.324 |
|
| 2018 |
Sivley RM, Dou X, Meiler J, Bush WS, Capra JA. Comprehensive Analysis of Constraint on the Spatial Distribution of Missense Variants in Human Protein Structures. American Journal of Human Genetics. PMID 29455857 DOI: 10.1016/J.Ajhg.2018.01.017 |
0.302 |
|
| 2018 |
Sevy AM, Panda S, Crowe JE, Meiler J, Vorobeychik Y. Integrating linear optimization with structural modeling to increase HIV neutralization breadth. Plos Computational Biology. 14: e1005999. PMID 29451898 DOI: 10.1371/Journal.Pcbi.1005999 |
0.344 |
|
| 2018 |
Joedicke L, Mao J, Kuenze G, Reinhart C, Kalavacherla T, Jonker HRA, Richter C, Schwalbe H, Meiler J, Preu J, Michel H, Glaubitz C. The molecular basis of subtype selectivity of human kinin G-protein-coupled receptors. Nature Chemical Biology. PMID 29334381 DOI: 10.1038/Nchembio.2551 |
0.46 |
|
| 2018 |
Tessmer MH, Anderson DM, Pickrum AM, Riegert MO, Moretti R, Meiler J, Feix JB, Frank DW. Identification of a ubiquitin-binding interface using Rosetta and DEER. Proceedings of the National Academy of Sciences of the United States of America. PMID 29295930 DOI: 10.1073/Pnas.1716861115 |
0.353 |
|
| 2018 |
Mao J, Lopez JJ, Shukla AK, Kuenze G, Meiler J, Schwalbe H, Michel H, Glaubitz C. Backbone structure of free bradykinin (BK) in DDM/CHS detergent micelle determined by MAS SSNMR Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr34207 |
0.419 |
|
| 2018 |
Mao J, Lopez JJ, Shukla AK, Kuenze G, Meiler J, Schwalbe H, Michel H, Glaubitz C. Backbone structure of bradykinin (BK) peptide bound to human Bradykinin 2 Receptor (B2R) determined by MAS SSNMR Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr34206 |
0.435 |
|
| 2017 |
Fu DY, Meiler J. The Predictive Power of Different Types of Experimental Restraints in Small Molecule Docking: A Review. Journal of Chemical Information and Modeling. PMID 29286651 DOI: 10.1021/Acs.Jcim.7B00418 |
0.305 |
|
| 2017 |
Duran AM, Meiler J. Computational Design of Membrane Proteins using RosettaMembrane. Protein Science : a Publication of the Protein Society. PMID 29090504 DOI: 10.1002/Pro.3335 |
0.323 |
|
| 2017 |
Li B, Fooksa M, Heinze S, Meiler J. Finding the needle in the haystack: towards solving the protein-folding problem computationally. Critical Reviews in Biochemistry and Molecular Biology. 1-28. PMID 28976219 DOI: 10.1080/10409238.2017.1380596 |
0.328 |
|
| 2017 |
Moretti R, Lyskov S, Das R, Meiler J, Gray JJ. Web-accessible molecular modeling with Rosetta: The Rosetta Online Server That Includes Everyone (ROSIE). Protein Science : a Publication of the Protein Society. PMID 28960691 DOI: 10.1002/Pro.3313 |
0.654 |
|
| 2017 |
Teixeira PL, Mendenhall JL, Heinze S, Weiner B, Skwark MJ, Meiler J. Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning. Plos One. 12: e0177866. PMID 28542325 DOI: 10.1371/Journal.Pone.0177866 |
0.729 |
|
| 2017 |
Li B, Mendenhall J, Nguyen ED, Weiner BE, Fischer AW, Meiler J. Improving Prediction of Helix-Helix Packing in Membrane Proteins Using Predicted Contact Numbers as Restraints. Proteins. PMID 28263405 DOI: 10.1002/Prot.25281 |
0.327 |
|
| 2016 |
Borza CM, Su Y, Tran TL, Yu L, Steyns N, Temple KJ, Skwark MJ, Meiler J, Lindsley CW, Hicks BR, Leitinger B, Zent R, Pozzi A. Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis. Matrix Biology : Journal of the International Society For Matrix Biology. PMID 27915093 DOI: 10.1016/J.Matbio.2016.11.009 |
0.691 |
|
| 2016 |
Beck-Sickinger AG, Burkert K, Zellmann T, Kaiser A, Meier R, Stichel J, Meiler J, Mittapalli GK, Roberts E. Deep Hydrophobic Binding Cavity is the Main Interaction of Different Y2R Antagonists. Chemmedchem. PMID 27874262 DOI: 10.1002/Cmdc.201600433 |
0.304 |
|
| 2016 |
Kroncke BM, Van Horn WD, Smith J, Kang C, Welch RC, Song Y, Nannemann DP, Taylor KC, Sisco NJ, George AL, Meiler J, Vanoye CG, Sanders CR. Structural basis for KCNE3 modulation of potassium recycling in epithelia. Science Advances. 2: e1501228. PMID 27626070 DOI: 10.1126/Sciadv.1501228 |
0.758 |
|
| 2016 |
Kroncke BM, Duran AM, Mendenhall JL, Meiler J, Blume JD, Sanders CR. Documentation of an Imperative to Improve Methods for Predicting Membrane Protein Stability. Biochemistry. PMID 27564391 DOI: 10.1021/Acs.Biochem.6B00537 |
0.316 |
|
| 2016 |
Bender BJ, Cisneros A, Duran AM, Finn JA, Fu D, Lokits AD, Mueller BK, Sangha AK, Sauer MF, Sevy AM, Sliwoski G, Sheehan JH, DiMaio F, Meiler J, Moretti R. Protocols for Molecular Modeling with Rosetta3 and RosettaScripts. Biochemistry. PMID 27490953 DOI: 10.1021/Acs.Biochem.6B00444 |
0.359 |
|
| 2016 |
Nnamani MC, Ganguly S, Erkenbrack EM, Lynch VJ, Mizoue LS, Tong Y, Darling HL, Fuxreiter M, Meiler J, Wagner GP. A Derived Allosteric Switch Underlies the Evolution of Conditional Cooperativity between HOXA11 and FOXO1. Cell Reports. PMID 27239043 DOI: 10.1016/J.Celrep.2016.04.088 |
0.537 |
|
| 2016 |
Finn JA, Koehler Leman J, Willis JR, Cisneros A, Crowe JE, Meiler J. Improving Loop Modeling of the Antibody Complementarity-Determining Region 3 Using Knowledge-Based Restraints. Plos One. 11: e0154811. PMID 27182833 DOI: 10.1371/Journal.Pone.0154811 |
0.319 |
|
| 2016 |
Figueroa M, Sleutel M, Vandevenne M, Parvizi G, Attout S, Jacquin O, Vandenameele J, Fischer AW, Damblon C, Goormaghtigh E, Valerio-Lepiniec M, Urvoas A, Durand D, Pardon E, Steyaert J, ... ... Meiler J, et al. The unexpected structure of the designed protein octarellin V.1 forms a challenge for protein structure prediction tools. Journal of Structural Biology. PMID 27181418 DOI: 10.1016/J.Jsb.2016.05.004 |
0.361 |
|
| 2016 |
Fischer AW, Bordignon E, Bleicken S, García-Sáez AJ, Jeschke G, Meiler J. Pushing the size limit of de novo structure ensemble prediction guided by sparse SDSL-EPR restraints to 200 residues: The monomeric and homodimeric forms of BAX. Journal of Structural Biology. PMID 27129417 DOI: 10.1016/J.Jsb.2016.04.014 |
0.356 |
|
| 2016 |
Schaarschmidt J, Nagel MB, Huth S, Jaeschke H, Moretti R, Hintze V, von Bergen M, Kalkhof S, Meiler J, Paschke R. Rearrangement of the extracellular domain/extracellular loop 1 interface is critical for thyrotropin receptor activation. The Journal of Biological Chemistry. PMID 27129207 DOI: 10.1074/Jbc.M115.709659 |
0.324 |
|
| 2016 |
Moretti R, Bender BJ, Allison B, Meiler J. Rosetta and the Design of Ligand Binding Sites. Methods in Molecular Biology (Clifton, N.J.). 1414: 47-62. PMID 27094285 DOI: 10.1007/978-1-4939-3569-7_4 |
0.312 |
|
| 2016 |
Fischer AW, Heinze S, Putnam DK, Li B, Pino JC, Xia Y, Lopez CF, Meiler J. CASP11 - An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline. Plos One. 11: e0152517. PMID 27046050 DOI: 10.1371/Journal.Pone.0152517 |
0.357 |
|
| 2016 |
Li B, Mendenhall J, Nguyen DE, Weiner BE, Fischer AW, Meiler J. Accurate Prediction of Contact Numbers for Multi-Spanning Helical Membrane Proteins. Journal of Chemical Information and Modeling. PMID 26804342 DOI: 10.1021/Acs.Jcim.5B00517 |
0.319 |
|
| 2015 |
Kothiwale S, Mendenhall JL, Meiler J. BCL::Conf: small molecule conformational sampling using a knowledge based rotamer library. Journal of Cheminformatics. 7: 47. PMID 26473018 DOI: 10.1186/S13321-015-0095-1 |
0.309 |
|
| 2015 |
DeLuca S, Khar K, Meiler J. Fully Flexible Docking of Medium Sized Ligand Libraries with RosettaLigand. Plos One. 10: e0132508. PMID 26207742 DOI: 10.1371/Journal.Pone.0132508 |
0.316 |
|
| 2015 |
Sevy AM, Jacobs TM, Crowe JE, Meiler J. Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences. Plos Computational Biology. 11: e1004300. PMID 26147100 DOI: 10.1371/Journal.Pcbi.1004300 |
0.33 |
|
| 2015 |
Putnam DK, Weiner BE, Woetzel N, Lowe EW, Meiler J. BCL::SAXS: GPU accelerated debye method for computation of small angle X Ray scattering profiles. Proteins. PMID 26018949 DOI: 10.1002/Prot.24838 |
0.33 |
|
| 2015 |
Hofmann T, Fischer AW, Meiler J, Kalkhof S. Protein structure prediction guided by crosslinking restraints - A systematic evaluation of the impact of the crosslinking spacer length. Methods (San Diego, Calif.). PMID 25986934 DOI: 10.1016/J.Ymeth.2015.05.014 |
0.33 |
|
| 2015 |
Kaiser A, Müller P, Zellmann T, Scheidt HA, Thomas L, Bosse M, Meier R, Meiler J, Huster D, Beck-Sickinger AG, Schmidt P. Unwinding of the C-Terminal Residues of Neuropeptide Y is critical for Y2 Receptor Binding and Activation. Angewandte Chemie (International Ed. in English). 54: 7446-9. PMID 25924821 DOI: 10.1002/Anie.201411688 |
0.307 |
|
| 2015 |
Fischer AW, Alexander NS, Woetzel N, Karakas M, Weiner BE, Meiler J. BCL::MP-Fold: Membrane protein structure prediction guided by EPR restraints. Proteins. PMID 25820805 DOI: 10.1002/Prot.24801 |
0.315 |
|
| 2015 |
Heinze S, Putnam DK, Fischer AW, Kohlmann T, Weiner BE, Meiler J. CASP10-BCL::Fold efficiently samples topologies of large proteins. Proteins. 83: 547-63. PMID 25581562 DOI: 10.1002/Prot.24733 |
0.334 |
|
| 2014 |
Sevy AM, Meiler J. Antibodies: Computer-Aided Prediction of Structure and Design of Function. Microbiology Spectrum. 2. PMID 26104439 DOI: 10.1128/Microbiolspec.Aid-0024-2014 |
0.317 |
|
| 2014 |
Lössl P, Kölbel K, Tänzler D, Nannemann D, Ihling CH, Keller MV, Schneider M, Zaucke F, Meiler J, Sinz A. Analysis of nidogen-1/laminin γ1 interaction by cross-linking, mass spectrometry, and computational modeling reveals multiple binding modes. Plos One. 9: e112886. PMID 25387007 DOI: 10.1371/Journal.Pone.0112886 |
0.755 |
|
| 2014 |
Margeti? A, Nannemann D, Meiler J, Huster D, Theisgen S. Guanylate Cyclase-Activating Protein-2 Undergoes Structural Changes upon Binding to Detergent Micelles and Bicelles. Biochimica Et Biophysica Acta. 1838: 2767-77. PMID 25051529 DOI: 10.1016/J.Bbamem.2014.07.012 |
0.768 |
|
| 2014 |
Doberenz C, Zorn M, Falke D, Nannemann D, Hunger D, Beyer L, Ihling CH, Meiler J, Sinz A, Sawers RG. Pyruvate formate-lyase interacts directly with the formate channel FocA to regulate formate translocation. Journal of Molecular Biology. 426: 2827-39. PMID 24887098 DOI: 10.1016/J.Jmb.2014.05.023 |
0.757 |
|
| 2014 |
Austin TM, Nannemann DP, Deluca SL, Meiler J, Delpire E. In silico analysis and experimental verification of OSR1 kinase - Peptide interaction. Journal of Structural Biology. 187: 58-65. PMID 24821279 DOI: 10.1016/J.Jsb.2014.05.001 |
0.763 |
|
| 2014 |
Gregory KJ, Nguyen ED, Malosh C, Mendenhall JL, Zic JZ, Bates BS, Noetzel MJ, Squire EF, Turner EM, Rook JM, Emmitte KA, Stauffer SR, Lindsley CW, Meiler J, Conn PJ. Identification of specific ligand-receptor interactions that govern binding and cooperativity of diverse modulators to a common metabotropic glutamate receptor 5 allosteric site. Acs Chemical Neuroscience. 5: 282-95. PMID 24528109 DOI: 10.1021/Cn400225X |
0.301 |
|
| 2014 |
Sliwoski G, Kothiwale S, Meiler J, Lowe EW. Computational methods in drug discovery. Pharmacological Reviews. 66: 334-95. PMID 24381236 DOI: 10.1124/Pr.112.007336 |
0.305 |
|
| 2014 |
Pedragosa-Badia X, Sliwoski GR, Dong Nguyen E, Lindner D, Stichel J, Kaufmann KW, Meiler J, Beck-Sickinger AG. Pancreatic polypeptide is recognized by two hydrophobic domains of the human Y4 receptor binding pocket. The Journal of Biological Chemistry. 289: 5846-59. PMID 24375409 DOI: 10.1074/Jbc.M113.502021 |
0.306 |
|
| 2014 |
Alexander NS, Preininger AM, Kaya AI, Stein RA, Hamm HE, Meiler J. Energetic analysis of the rhodopsin-G-protein complex links the α5 helix to GDP release. Nature Structural & Molecular Biology. 21: 56-63. PMID 24292645 DOI: 10.1038/Nsmb.2705 |
0.312 |
|
| 2014 |
Weiner BE, Alexander N, Akin LR, Woetzel N, Karakas M, Meiler J. BCL::Fold--protein topology determination from limited NMR restraints. Proteins. 82: 587-95. PMID 24123100 DOI: 10.1002/Prot.24427 |
0.356 |
|
| 2014 |
Allison B, Combs S, DeLuca S, Lemmon G, Mizoue L, Meiler J. Computational design of protein-small molecule interfaces. Journal of Structural Biology. 185: 193-202. PMID 23962892 DOI: 10.1016/J.Jsb.2013.08.003 |
0.317 |
|
| 2013 |
Duran AM, Meiler J. Inverted topologies in membrane proteins: a mini-review. Computational and Structural Biotechnology Journal. 8: e201308004. PMID 24688744 DOI: 10.5936/Csbj.201308004 |
0.307 |
|
| 2013 |
Thornburg NJ, Nannemann DP, Blum DL, Belser JA, Tumpey TM, Deshpande S, Fritz GA, Sapparapu G, Krause JC, Lee JH, Ward AB, Lee DE, Li S, Winarski KL, Spiller BW, ... Meiler J, et al. Human antibodies that neutralize respiratory droplet transmissible H5N1 influenza viruses. The Journal of Clinical Investigation. 123: 4405-9. PMID 23999429 DOI: 10.1172/Jci69377 |
0.746 |
|
| 2013 |
Figueroa M, Oliveira N, Lejeune A, Kaufmann KW, Dorr BM, Matagne A, Martial JA, Meiler J, Van de Weerdt C. Octarellin VI: using rosetta to design a putative artificial (β/α)8 protein. Plos One. 8: e71858. PMID 23977165 DOI: 10.1371/Journal.Pone.0071858 |
0.333 |
|
| 2013 |
Lindert S, Meiler J, McCammon JA. Iterative Molecular Dynamics-Rosetta Protein Structure Refinement Protocol to Improve Model Quality. Journal of Chemical Theory and Computation. 9: 3843-3847. PMID 23956701 DOI: 10.1021/Ct400260C |
0.615 |
|
| 2013 |
Li F, Xia Y, Meiler J, Ferguson-Miller S. Characterization and modeling of the oligomeric state and ligand binding behavior of purified translocator protein 18 kDa from Rhodobacter sphaeroides. Biochemistry. 52: 5884-99. PMID 23952237 DOI: 10.1021/Bi400431T |
0.311 |
|
| 2013 |
Nguyen ED, Norn C, Frimurer TM, Meiler J. Assessment and challenges of ligand docking into comparative models of G-protein coupled receptors. Plos One. 8: e67302. PMID 23844000 DOI: 10.1371/Journal.Pone.0067302 |
0.338 |
|
| 2013 |
Combs SA, Deluca SL, Deluca SH, Lemmon GH, Nannemann DP, Nguyen ED, Willis JR, Sheehan JH, Meiler J. Small-molecule ligand docking into comparative models with Rosetta. Nature Protocols. 8: 1277-98. PMID 23744289 DOI: 10.1038/Nprot.2013.074 |
0.785 |
|
| 2013 |
Weiner BE, Woetzel N, Karaka? M, Alexander N, Meiler J. BCL::MP-fold: folding membrane proteins through assembly of transmembrane helices. Structure (London, England : 1993). 21: 1107-17. PMID 23727232 DOI: 10.1016/J.Str.2013.04.022 |
0.336 |
|
| 2013 |
Aiyegbo MS, Sapparapu G, Spiller BW, Eli IM, Williams DR, Kim R, Lee DE, Liu T, Li S, Woods VL, Nannemann DP, Meiler J, Stewart PL, Crowe JE. Human rotavirus VP6-specific antibodies mediate intracellular neutralization by binding to a quaternary structure in the transcriptional pore. Plos One. 8: e61101. PMID 23671563 DOI: 10.1371/Journal.Pone.0061101 |
0.75 |
|
| 2013 |
Preininger AM, Meiler J, Hamm HE. Conformational flexibility and structural dynamics in GPCR-mediated G protein activation: a perspective. Journal of Molecular Biology. 425: 2288-98. PMID 23602809 DOI: 10.1016/J.Jmb.2013.04.011 |
0.309 |
|
| 2013 |
Leman JK, Mueller R, Karakas M, Woetzel N, Meiler J. Simultaneous prediction of protein secondary structure and transmembrane spans. Proteins. 81: 1127-40. PMID 23349002 DOI: 10.1002/Prot.24258 |
0.748 |
|
| 2013 |
Butkiewicz M, Lowe EW, Mueller R, Mendenhall JL, Teixeira PL, Weaver CD, Meiler J. Benchmarking ligand-based virtual High-Throughput Screening with the PubChem database. Molecules (Basel, Switzerland). 18: 735-56. PMID 23299552 DOI: 10.3390/Molecules18010735 |
0.301 |
|
| 2013 |
Lindert S, Stewart PL, Meiler J. Computational determination of the orientation of a heat repeat-like domain of DNA-PKcs. Computational Biology and Chemistry. 42: 1-4. PMID 23246775 DOI: 10.1016/J.Compbiolchem.2012.11.001 |
0.588 |
|
| 2013 |
Meiler J. Membrane Protein Structure Determination Through Assembly of Trans-Membrane Helices Guided by Limited Experimental Data Biophysical Journal. 104: 3-4. DOI: 10.1016/J.Bpj.2012.11.2142 |
0.327 |
|
| 2012 |
Kaufmann KW, Meiler J. Using RosettaLigand for small molecule docking into comparative models. Plos One. 7: e50769. PMID 23239984 DOI: 10.1371/Journal.Pone.0050769 |
0.317 |
|
| 2012 |
Woetzel N, Karaka? M, Staritzbichler R, Müller R, Weiner BE, Meiler J. BCL::Score--knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements. Plos One. 7: e49242. PMID 23173051 DOI: 10.1371/Journal.Pone.0049242 |
0.326 |
|
| 2012 |
Karaka? M, Woetzel N, Staritzbichler R, Alexander N, Weiner BE, Meiler J. BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements. Plos One. 7: e49240. PMID 23173050 DOI: 10.1371/Journal.Pone.0049240 |
0.332 |
|
| 2012 |
Lindert S, Alexander N, Wötzel N, Karaka? M, Stewart PL, Meiler J. EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps. Structure (London, England : 1993). 20: 464-78. PMID 22405005 DOI: 10.1016/J.Str.2012.01.023 |
0.588 |
|
| 2012 |
Eisenbeis S, Proffitt W, Coles M, Truffault V, Shanmugaratnam S, Meiler J, Höcker B. Potential of fragment recombination for rational design of proteins. Journal of the American Chemical Society. 134: 4019-22. PMID 22329686 DOI: 10.1021/Ja211657K |
0.358 |
|
| 2012 |
Lindert S, Hofmann T, Wötzel N, Karaka? M, Stewart PL, Meiler J. Ab initio protein modeling into CryoEM density maps using EM-Fold. Biopolymers. 97: 669-77. PMID 22302372 DOI: 10.1002/Bip.22027 |
0.597 |
|
| 2012 |
Lemmon G, Meiler J. Rosetta Ligand docking with flexible XML protocols. Methods in Molecular Biology (Clifton, N.J.). 819: 143-55. PMID 22183535 DOI: 10.1007/978-1-61779-465-0_10 |
0.306 |
|
| 2011 |
Koehler J, Meiler J. Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects. Progress in Nuclear Magnetic Resonance Spectroscopy. 59: 360-89. PMID 22027343 DOI: 10.1016/J.Pnmrs.2011.05.001 |
0.318 |
|
| 2011 |
Fortenberry C, Bowman EA, Proffitt W, Dorr B, Combs S, Harp J, Mizoue L, Meiler J. Exploring symmetry as an avenue to the computational design of large protein domains. Journal of the American Chemical Society. 133: 18026-9. PMID 21978247 DOI: 10.1021/Ja2051217 |
0.346 |
|
| 2011 |
Fleishman SJ, Leaver-Fay A, Corn JE, Strauch EM, Khare SD, Koga N, Ashworth J, Murphy P, Richter F, Lemmon G, Meiler J, Baker D. RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite. Plos One. 6: e20161. PMID 21731610 DOI: 10.1371/Journal.Pone.0020161 |
0.789 |
|
| 2011 |
Woetzel N, Lindert S, Stewart PL, Meiler J. BCL::EM-Fit: rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement. Journal of Structural Biology. 175: 264-76. PMID 21565271 DOI: 10.1016/J.Jsb.2011.04.016 |
0.57 |
|
| 2011 |
Ganguly S, Weiner BE, Meiler J. Membrane protein structure determination using paramagnetic tags. Structure (London, England : 1993). 19: 441-3. PMID 21481766 DOI: 10.1016/J.Str.2011.03.008 |
0.556 |
|
| 2011 |
Morin A, Kaufmann KW, Fortenberry C, Harp JM, Mizoue LS, Meiler J. Computational design of an endo-1,4-beta-xylanase ligand binding site. Protein Engineering, Design & Selection : Peds. 24: 503-16. PMID 21349882 DOI: 10.1093/Protein/Gzr006 |
0.598 |
|
| 2011 |
Morin A, Meiler J, Mizoue LS. Computational design of protein-ligand interfaces: potential in therapeutic development. Trends in Biotechnology. 29: 159-66. PMID 21295366 DOI: 10.1016/J.Tibtech.2011.01.002 |
0.59 |
|
| 2011 |
Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, ... ... Meiler J, et al. ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. Methods in Enzymology. 487: 545-74. PMID 21187238 DOI: 10.1016/B978-0-12-381270-4.00019-6 |
0.759 |
|
| 2011 |
Kazmier K, Alexander NS, Meiler J, McHaourab HS. Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination. Journal of Structural Biology. 173: 549-57. PMID 21074624 DOI: 10.1016/J.Jsb.2010.11.003 |
0.321 |
|
| 2011 |
Hirst SJ, Alexander N, McHaourab HS, Meiler J. RosettaEPR: an integrated tool for protein structure determination from sparse EPR data. Journal of Structural Biology. 173: 506-14. PMID 21029778 DOI: 10.1016/J.Bpj.2010.12.1390 |
0.34 |
|
| 2011 |
Meiler J, Lindert S, Stewart P. De Novo Atomic-Detail Structure Prediction for Proteins Guided by Medium Resolution Density Maps Microscopy and Microanalysis. 17: 970-971. DOI: 10.1017/S1431927611005721 |
0.581 |
|
| 2011 |
Lindert S, Stewart P, Meiler J. Predicting Models for a Domain of DNA-PKcs Microscopy and Microanalysis. 17: 126-127. DOI: 10.1017/S1431927611001504 |
0.566 |
|
| 2011 |
DeLuca S, Meiler J. A Novel Method for Guiding Protein-Ligand Docking with QSAR-Derived Pharmacophore Maps Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2344 |
0.327 |
|
| 2010 |
Kalkhof S, Haehn S, Paulsson M, Smyth N, Meiler J, Sinz A. Computational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linking. Proteins. 78: 3409-27. PMID 20939100 DOI: 10.1002/Prot.22848 |
0.301 |
|
| 2010 |
Nannemann DP, Kaufmann KW, Meiler J, Bachmann BO. Design and directed evolution of a dideoxy purine nucleoside phosphorylase. Protein Engineering, Design & Selection : Peds. 23: 607-16. PMID 20525731 DOI: 10.1093/Protein/Gzq033 |
0.773 |
|
| 2010 |
Kaufmann KW, Lemmon GH, Deluca SL, Sheehan JH, Meiler J. Practically useful: what the Rosetta protein modeling suite can do for you. Biochemistry. 49: 2987-98. PMID 20235548 DOI: 10.1021/Bi902153G |
0.371 |
|
| 2010 |
Karaka? M, Woetzel N, Meiler J. BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 153-68. PMID 19772383 DOI: 10.1089/Cmb.2009.0030 |
0.32 |
|
| 2010 |
Kazmier K, Alexander NS, Meiler J, Mchaourab HS. Optimal Selection of EPR Distance Restraints for Global Folding of Protein Structure Biophysical Journal. 98: 571a-572a. DOI: 10.1016/J.Bpj.2009.12.3104 |
0.32 |
|
| 2009 |
Farès C, Lakomek NA, Walter KF, Frank BT, Meiler J, Becker S, Griesinger C. Accessing ns-micros side chain dynamics in ubiquitin with methyl RDCs. Journal of Biomolecular Nmr. 45: 23-44. PMID 19652920 DOI: 10.1007/S10858-009-9354-7 |
0.447 |
|
| 2009 |
Lindert S, Staritzbichler R, Wötzel N, Karaka? M, Stewart PL, Meiler J. EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps. Structure (London, England : 1993). 17: 990-1003. PMID 19604479 DOI: 10.1016/J.Str.2009.06.001 |
0.582 |
|
| 2009 |
Friedland GD, Lakomek NA, Griesinger C, Meiler J, Kortemme T. A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family. Plos Computational Biology. 5: e1000393. PMID 19478996 DOI: 10.1371/Journal.Pcbi.1000393 |
0.664 |
|
| 2009 |
Lindert S, Stewart PL, Meiler J. Hybrid approaches: applying computational methods in cryo-electron microscopy. Current Opinion in Structural Biology. 19: 218-25. PMID 19339173 DOI: 10.1016/J.Sbi.2009.02.010 |
0.579 |
|
| 2009 |
Durham E, Dorr B, Woetzel N, Staritzbichler R, Meiler J. Solvent accessible surface area approximations for rapid and accurate protein structure prediction. Journal of Molecular Modeling. 15: 1093-108. PMID 19234730 DOI: 10.1007/S00894-009-0454-9 |
0.317 |
|
| 2009 |
Koehler J, Woetzel N, Staritzbichler R, Sanders CR, Meiler J. A unified hydrophobicity scale for multispan membrane proteins. Proteins. 76: 13-29. PMID 19089980 DOI: 10.1002/Prot.22315 |
0.3 |
|
| 2009 |
Alexander N, Mchaourab H, Meiler J. Membrane Protein Structure Determination by Coupling Sparse Experimental Data with Protein Structure Prediction Techniques Biophysical Journal. 96: 654a. DOI: 10.1016/J.Bpj.2008.12.3455 |
0.327 |
|
| 2009 |
Lindert S, Staritzbichler R, Woetzel N, Karakas M, Stewart P, Meiler J. Cryo-EM Guided de novo Protein Fold Elucidation Biophysical Journal. 96: 654a. DOI: 10.1016/J.Bpj.2008.12.3454 |
0.605 |
|
| 2008 |
Lakomek NA, Lange OF, Walter KF, Farès C, Egger D, Lunkenheimer P, Meiler J, Grubmüller H, Becker S, de Groot BL, Griesinger C. Residual dipolar couplings as a tool to study molecular recognition of ubiquitin. Biochemical Society Transactions. 36: 1433-7. PMID 19021570 DOI: 10.1042/Bst0361433 |
0.496 |
|
| 2008 |
Lange OF, Lakomek NA, Farès C, Schröder GF, Walter KF, Becker S, Meiler J, Grubmüller H, Griesinger C, de Groot BL. Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science (New York, N.Y.). 320: 1471-5. PMID 18556554 DOI: 10.1126/Science.1157092 |
0.471 |
|
| 2008 |
Lakomek NA, Walter KF, Farès C, Lange OF, de Groot BL, Grubmüller H, Brüschweiler R, Munk A, Becker S, Meiler J, Griesinger C. Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics. Journal of Biomolecular Nmr. 41: 139-55. PMID 18523727 DOI: 10.1007/S10858-008-9244-4 |
0.45 |
|
| 2008 |
Alexander N, Bortolus M, Al-Mestarihi A, Mchaourab H, Meiler J. De novo high-resolution protein structure determination from sparse spin-labeling EPR data. Structure (London, England : 1993). 16: 181-95. PMID 18275810 DOI: 10.1016/J.Str.2007.11.015 |
0.304 |
|
| 2007 |
Reese M, Sánchez-Pedregal VM, Kubicek K, Meiler J, Blommers MJJ, Griesinger C, Carlomagno T. Structural basis of the activity of the microtubule-stabilizing agent epothilone a studied by NMR spectroscopy in solution Angewandte Chemie - International Edition. 46: 1864-1868. PMID 17274084 DOI: 10.1002/Anie.200604505 |
0.455 |
|
| 2006 |
Zanghellini A, Jiang L, Wollacott AM, Cheng G, Meiler J, Althoff EA, Röthlisberger D, Baker D. New algorithms and an in silico benchmark for computational enzyme design. Protein Science : a Publication of the Protein Society. 15: 2785-94. PMID 17132862 DOI: 10.1110/Ps.062353106 |
0.759 |
|
| 2006 |
Sánchez-Pedregal VM, Kubicek K, Meiler J, Lyothier I, Paterson I, Carlomagno T. The tubulin-bound conformation of discodermolide derived by NMR studies in solution supports a common pharmacophore model for epothilone and discodermolide Angewandte Chemie - International Edition. 45: 7388-7394. PMID 17036370 DOI: 10.1002/Anie.200602793 |
0.315 |
|
| 2006 |
Meiler J, Baker D. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility. Proteins. 65: 538-48. PMID 16972285 DOI: 10.1002/Prot.21086 |
0.429 |
|
| 2006 |
Lakomek NA, Carlomagno T, Becker S, Griesinger C, Meiler J. A thorough dynamic interpretation of residual dipolar couplings in ubiquitin Journal of Biomolecular Nmr. 34: 101-115. PMID 16518697 DOI: 10.1007/S10858-005-5686-0 |
0.452 |
|
| 2005 |
Lakomek NA, Farès C, Becker S, Carlomagno T, Meiler J, Griesinger C. Side-chain orientation and hydrogen-bonding imprint supra-τC motion on the protein backbone of ubiquitin Angewandte Chemie - International Edition. 44: 7776-7778. PMID 16276548 DOI: 10.1002/Anie.200502573 |
0.621 |
|
| 2005 |
Graña O, Baker D, MacCallum RM, Meiler J, Punta M, Rost B, Tress ML, Valencia A. CASP6 assessment of contact prediction. Proteins. 61: 214-24. PMID 16187364 DOI: 10.1002/Prot.20739 |
0.395 |
|
| 2005 |
Bradley P, Malmström L, Qian B, Schonbrun J, Chivian D, Kim DE, Meiler J, Misura KM, Baker D. Free modeling with Rosetta in CASP6. Proteins. 61: 128-34. PMID 16187354 DOI: 10.1002/Prot.20729 |
0.79 |
|
| 2005 |
Sánchez-Pedregal VM, Reese M, Meiler J, Blommers MJJ, Griesinger C, Carlomagno T. The INPHARMA method: Protein-mediated interligand NOEs for pharmacophore mapping Angewandte Chemie - International Edition. 44: 4172-4175. PMID 15929149 DOI: 10.1002/Anie.200500503 |
0.474 |
|
| 2005 |
Meiler J, Baker D. The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 173: 310-6. PMID 15780923 DOI: 10.1016/J.Jmr.2004.11.031 |
0.449 |
|
| 2004 |
Griesinger C, Peti W, Meiler J, Brüschweiler R. Projection angle restraints for studying structure and dynamics of biomolecules Methods in Molecular Biology (Clifton, N.J.). 278: 107-121. PMID 15317994 DOI: 10.1385/1-59259-809-9:107 |
0.625 |
|
| 2004 |
Kuhn M, Meiler J, Baker D. Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins. Proteins. 54: 282-8. PMID 14696190 DOI: 10.1002/Prot.10589 |
0.398 |
|
| 2003 |
Meiler J, Baker D. Rapid protein fold determination using unassigned NMR data. Proceedings of the National Academy of Sciences of the United States of America. 100: 15404-9. PMID 14668443 DOI: 10.1073/Pnas.2434121100 |
0.447 |
|
| 2003 |
Bradley P, Chivian D, Meiler J, Misura KM, Rohl CA, Schief WR, Wedemeyer WJ, Schueler-Furman O, Murphy P, Schonbrun J, Strauss CE, Baker D. Rosetta predictions in CASP5: successes, failures, and prospects for complete automation. Proteins. 53: 457-68. PMID 14579334 DOI: 10.1002/Prot.10552 |
0.773 |
|
| 2003 |
Meiler J, Baker D. Coupled prediction of protein secondary and tertiary structure. Proceedings of the National Academy of Sciences of the United States of America. 100: 12105-10. PMID 14528006 DOI: 10.1073/Pnas.1831973100 |
0.426 |
|
| 2003 |
Meiler J, Peti W, Griesinger C. Dipolar couplings in multiple alignments suggest α helical motion in ubiquitin Journal of the American Chemical Society. 125: 8072-8073. PMID 12837055 DOI: 10.1021/Ja029816L |
0.635 |
|
| 2003 |
Carlomagno T, Blommers MJJ, Meiler J, Jahnke W, Schupp T, Petersen F, Schinzer D, Altmann KH, Griesinger C. The high-resolution solution structure of epothilone A bound to tuhulin: An understanding of the structure-activity relationships for a powerful class of antitumor agents Angewandte Chemie - International Edition. 42: 2511-2515. PMID 12800173 DOI: 10.1002/Anie.200351276 |
0.439 |
|
| 2003 |
Meiler J. PROSHIFT: Protein chemical shift prediction using artificial neural networks Journal of Biomolecular Nmr. 26: 25-37. PMID 12766400 DOI: 10.1023/A:1023060720156 |
0.332 |
|
| 2003 |
Carlomagno T, Blommers MJJ, Meiler J, Jahnke W, Schupp T, Petersen F, Schinzer D, Altmann K, Griesinger C. Cover Picture: The High-Resolution Solution Structure of Epothilone A Bound to Tubulin: An Understanding of the Structure–Activity Relationships for a Powerful Class of Antitumor Agents (Angew. Chem. Int. Ed. 22/2003) Angewandte Chemie International Edition. 42: 2433-2433. DOI: 10.1002/Anie.200390473 |
0.432 |
|
| 2003 |
Carlomagno T, Blommers MJJ, Meiler J, Jahnke W, Schupp T, Petersen F, Schinzer D, Altmann K, Griesinger C. Titelbild: The High-Resolution Solution Structure of Epothilone A Bound to Tubulin: An Understanding of the Structure–Activity Relationships for a Powerful Class of Antitumor Agents (Angew. Chem. 22/2003) Angewandte Chemie. 115: 2537-2537. DOI: 10.1002/Ange.200390500 |
0.431 |
|
| 2002 |
Hutter MC, Krebs J, Meiler J, Griesinger C, Carafoli E, Helms V. A structural model of the complex formed by phospholamban and the calcium pump of sarcoplasmic reticulum obtained by molecular mechanics Chembiochem. 3: 1200-1208. PMID 12465028 DOI: 10.1002/1439-7633(20021202)3:12<1200::Aid-Cbic1200>3.0.Co;2-H |
0.49 |
|
| 2002 |
Peti W, Meiler J, Brüschweiler R, Griesinger C. Model-free analysis of protein backbone motion from residual dipolar couplings Journal of the American Chemical Society. 124: 5822-5833. PMID 12010057 DOI: 10.1021/Ja011883C |
0.63 |
|
| 2001 |
Carlomagno T, Blommers MJJ, Meiler J, Cuenoud B, Griesinger C. Determination of aliphatic side-chain conformation using cross-correlated relaxation: Application to an extraordinarily stable 2′-aminoethoxy-modified oligonucleotide triplex Journal of the American Chemical Society. 123: 7364-7370. PMID 11472167 DOI: 10.1021/Ja002592R |
0.447 |
|
| 2001 |
Meiler J, Prompers JJ, Peti W, Griesinger C, Brüschweiler R. Model-free approach to the dynamic interpretation of residual dipolar couplings in globular proteins Journal of the American Chemical Society. 123: 6098-6107. PMID 11414844 DOI: 10.1021/Ja010002Z |
0.634 |
|
| 2001 |
Neubauer H, Meiler J, Peti W, Griesinger C. NMR structure determination of saccharose and raffinose by means of homo- and heteronuclear dipolar couplings Helvetica Chimica Acta. 84: 243-258. DOI: 10.1002/1522-2675(20010131)84:1<243::Aid-Hlca243>3.0.Co;2-F |
0.406 |
|
| 2000 |
Meiler J, Peti W, Griesinger C. DipoCoup: A versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts Journal of Biomolecular Nmr. 17: 283-294. PMID 11014592 DOI: 10.1023/A:1008362931964 |
0.647 |
|
| 2000 |
Meiler J, Blomberg N, Nilges M, Griesinger C. A new approach for applying residual dipolar couplings as restraints in structure elucidation Journal of Biomolecular Nmr. 16: 245-252. PMID 10805131 DOI: 10.1023/A:1008378624590 |
0.458 |
|
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