Thomas J. Near, Ph.D. - Publications

Ecology & Evolutionary Biology Yale University, New Haven, CT 
evolution, phylogenetics, ichthyology

131 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Melo BF, Sidlauskas BL, Near TJ, Roxo FF, Ghezelayagh A, Ochoa LE, Stiassny MLJ, Arroyave J, Chang J, Faircloth BC, MacGuigan DJ, Harrington RC, Benine RC, Burns MD, Hoekzema K, et al. Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes. Systematic Biology. PMID 34097063 DOI: 10.1093/sysbio/syab040  1
2021 Taylor LU, Benavides E, Simmons JW, Near TJ. Genomic and phenotypic divergence informs translocation strategies for an endangered freshwater fish. Molecular Ecology. PMID 33960044 DOI: 10.1111/mec.15947  0.68
2021 Kim D, Bauer BH, Near TJ. Introgression and Species Delimitation in the Longear Sunfish Lepomis megalotis (Teleostei: Percomorpha: Centrarchidae). Systematic Biology. PMID 33944950 DOI: 10.1093/sysbio/syab029  0.92
2021 Near TJ, Kim D. Phylogeny and time scale of diversification in the fossil-rich Sunfishes and Black Basses (Teleostei: Percomorpha: Centrarchidae). Molecular Phylogenetics and Evolution. 107156. PMID 33741536 DOI: 10.1016/j.ympev.2021.107156  0.92
2020 Daane JM, Dornburg A, Smits P, MacGuigan DJ, Hawkins MB, Near TJ, Detrich HW, Harris MP. Author Correction: Historical contingency shapes adaptive radiation in Antarctic fishes. Nature Ecology & Evolution. PMID 32157252 DOI: 10.1038/S41559-020-1169-7  1
2020 Mesa ML, Donato F, Riginella E, Papetti C, Parker E, Near TJ. Reproductive traits and age of barbeled plunderfishes from the Weddell Sea Antarctic Science. 32: 239-247. DOI: 10.1017/S0954102020000140  0.32
2019 Friedman M, Feilich KL, Beckett HT, Alfaro ME, Faircloth BC, Černý D, Miya M, Near TJ, Harrington RC. A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean. Proceedings. Biological Sciences. 286: 20191502. PMID 31506051 DOI: 10.1098/Rspb.2019.1502  1
2019 Daane JM, Dornburg A, Smits P, MacGuigan DJ, Brent Hawkins M, Near TJ, William Detrich Iii H, Harris MP. Historical contingency shapes adaptive radiation in Antarctic fishes. Nature Ecology & Evolution. PMID 31182814 DOI: 10.1038/S41559-019-0914-2  1
2018 MacGuigan DJ, Near TJ. Phylogenomic Signatures of Ancient Introgression in a Rogue Lineage of Darters (Teleostei: Percidae). Systematic Biology. PMID 30395332 DOI: 10.1093/Sysbio/Syy074  1
2018 Near TJ, MacGuigan DJ, Parker E, Struthers CD, Jones CD, Dornburg A. Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiations. Molecular Phylogenetics and Evolution. PMID 30195039 DOI: 10.1016/J.Ympev.2018.09.001  1
2018 Rabosky DL, Chang J, Title PO, Cowman PF, Sallan L, Friedman M, Kaschner K, Garilao C, Near TJ, Coll M, Alfaro ME. An inverse latitudinal gradient in speciation rate for marine fishes. Nature. PMID 29973726 DOI: 10.1038/S41586-018-0273-1  0.8
2018 Alfaro ME, Faircloth BC, Harrington RC, Sorenson L, Friedman M, Thacker CE, Oliveros CH, Černý D, Near TJ. Explosive diversification of marine fishes at the Cretaceous-Palaeogene boundary. Nature Ecology & Evolution. PMID 29531346 DOI: 10.1038/S41559-018-0494-6  1
2017 Giles S, Xu GH, Near TJ, Friedman M. Erratum: Early members of 'living fossil' lineage imply later origin of modern ray-finned fishes. Nature. PMID 29168509 DOI: 10.1038/Nature25004  0.8
2017 Dornburg A, Federman S, Lamb AD, Jones CD, Near TJ. Cradles and museums of Antarctic teleost biodiversity. Nature Ecology & Evolution. 1: 1379-1384. PMID 29046532 DOI: 10.1038/S41559-017-0239-Y  0.8
2017 Giles S, Xu GH, Near TJ, Friedman M. Early members of 'living fossil' lineage imply later origin of modern ray-finned fishes. Nature. PMID 28854173 DOI: 10.1038/nature23654  0.8
2017 Chakrabarty P, Faircloth BC, Alda F, Ludt WB, McMahan CD, Near TJ, Dornburg A, Albert JS, Arroyave J, Stiassny ML, Sorenson L, Alfaro ME. Phylogenomic Systematics of Ostariophysan fishes: Ultraconserved Elements Support the Surprising Non-monophyly of Characiformes. Systematic Biology. PMID 28334176 DOI: 10.1093/Sysbio/Syx038  0.8
2017 Dornburg A, Townsend JP, Brooks W, Spriggs E, Eytan RI, Moore JA, Wainwright PC, Lemmon A, Lemmon EM, Near TJ. New Insights on the Sister Lineage of Percomorph Fishes with an Anchored Hybrid Enrichment Dataset. Molecular Phylogenetics and Evolution. PMID 28254474 DOI: 10.1016/J.Ympev.2017.02.017  1
2016 Harrington RC, Faircloth BC, Eytan RI, Smith WL, Near TJ, Alfaro ME, Friedman M. Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye. Bmc Evolutionary Biology. 16: 224. PMID 27769164 DOI: 10.1186/S12862-016-0786-X  1
2016 Dornburg A, Federman S, Eytan RI, Near TJ. Cryptic species diversity in Sub-Antarctic islands: A case study of Lepidonotothen. Molecular Phylogenetics and Evolution. PMID 27421566 DOI: 10.1016/J.Ympev.2016.07.013  0.8
2015 Thacker CE, Satoh TP, Katayama E, Harrington RC, Eytan RI, Near TJ. Molecular phylogeny of Percomorpha resolves Trichonotus as the sister lineage to Gobioidei (Teleostei: Gobiiformes) and confirms the polyphyly of Trachinoidei. Molecular Phylogenetics and Evolution. 93: 172-9. PMID 26265255 DOI: 10.1016/J.Ympev.2015.08.001  1
2015 Eytan RI, Evans BR, Dornburg A, Lemmon AR, Lemmon EM, Wainwright PC, Near TJ. Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment. Bmc Evolutionary Biology. 15: 113. PMID 26071950 DOI: 10.1186/S12862-015-0415-0  1
2015 Near TJ, Dornburg A, Harrington RC, Oliveira C, Pietsch TW, Thacker CE, Satoh TP, Katayama E, Wainwright PC, Eastman JT, Beaulieu JM. Identification of the notothenioid sister lineage illuminates the biogeographic history of an Antarctic adaptive radiation. Bmc Evolutionary Biology. 15: 109. PMID 26062690 DOI: 10.1186/S12862-015-0362-9  1
2015 Dornburg A, Friedman M, Near TJ. Phylogenetic analysis of molecular and morphological data highlights uncertainty in the relationships of fossil and living species of Elopomorpha (Actinopterygii: Teleostei). Molecular Phylogenetics and Evolution. 89: 205-18. PMID 25899306 DOI: 10.1016/J.Ympev.2015.04.004  1
2015 Bossu CM, Near TJ. Ecological constraint and the evolution of sexual dichromatism in darters. Evolution; International Journal of Organic Evolution. 69: 1219-31. PMID 25824960 DOI: 10.1111/Evo.12655  0.96
2015 Farina SC, Near TJ, Bemis WE. Evolution of the branchiostegal membrane and restricted gill openings in Actinopterygian fishes. Journal of Morphology. 276: 681-94. PMID 25678140 DOI: 10.1002/Jmor.20371  0.72
2015 Harrington RC, Near TJ. Phylogenetic relationships of Goneaperca and the evolution of parental care in darters (Teleostei: Percidae). Molecular Phylogenetics and Evolution. 84: 158-65. PMID 25615427 DOI: 10.1016/J.Ympev.2015.01.002  1
2015 Dornburg A, Moore J, Beaulieu JM, Eytan RI, Near TJ. The impact of shifts in marine biodiversity hotspots on patterns of range evolution: Evidence from the Holocentridae (squirrelfishes and soldierfishes). Evolution; International Journal of Organic Evolution. 69: 146-61. PMID 25407924 DOI: 10.1111/Evo.12562  1
2015 Near TJ, Thomas MR. A new Barcheek darter species from buck creek (Cumberland river system), Kentucky (Percidae: Etheostomatinae: Catonotus: Oopareia) Bulletin of the Peabody Museum of Natural History. 56: 127-146. DOI: 10.3374/014.056.0202  1
2015 Benton MJ, Donoghue PCJ, Asher RJ, Friedman M, Near TJ, Vinther J. Constraints on the timescale of animal evolutionary history Palaeontologia Electronica. 18. DOI: 10.26879/424  1
2015 Echelle AA, Schwemm MR, Lang NJ, Baker JS, Wood RM, Near TJ, Fisher WL. Molecular systematics of the least darter (Percidae: Etheostoma microperca): Historical biogeography and conservation implications Copeia. 2015: 87-98. DOI: 10.1643/Cg-14-082  1
2015 Bossu CM, Near TJ. Ecological constraint and the evolution of sexual dichromatism in darters Evolution. 69: 1219-1231. DOI: 10.1111/evo.12655  1
2015 Thacker CE, Satoh TP, Katayama E, Harrington RC, Eytan RI, Near TJ. Molecular phylogeny of Percomorpha resolves Trichonotus as the sister lineage to Gobioidei (Teleostei: Gobiiformes) and confirms the polyphyly of Trachinoidei Molecular Phylogenetics and Evolution. 93: 172-179. DOI: 10.1016/j.ympev.2015.08.001  1
2015 Price SA, Claverie T, Near TJ, Wainwright PC. Phylogenetic insights into the history and diversification of fishes on reefs Coral Reefs. 34: 997-1009. DOI: 10.1007/S00338-015-1326-7  1
2015 Dornburg A, Eytan RI, Federman S, Pennington JN, Stewart AL, Jones CD, Near TJ. Molecular data support the existence of two species of the Antarctic fish genus Cryodraco (Channichthyidae) Polar Biology. 1-11. DOI: 10.1007/S00300-015-1859-9  1
2015 Farina SC, Near TJ, Bemis WE. Evolution of the branchiostegal membrane and restricted gill openings in Actinopterygian fishes Journal of Morphology. 276: 681-694. DOI: 10.1002/jmor.20371  1
2014 Dornburg A, Townsend JP, Friedman M, Near TJ. Phylogenetic informativeness reconciles ray-finned fish molecular divergence times. Bmc Evolutionary Biology. 14: 169. PMID 25103329 DOI: 10.1186/S12862-014-0169-0  1
2014 Near TJ, Dornburg A, Friedman M. Phylogenetic relationships and timing of diversification in gonorynchiform fishes inferred using nuclear gene DNA sequences (Teleostei: Ostariophysi). Molecular Phylogenetics and Evolution. 80: 297-307. PMID 25087656 DOI: 10.1016/J.Ympev.2014.07.013  1
2014 Friedman M, Johanson Z, Harrington RC, Near TJ, Graham MR. On fossils, phylogenies and sequences of evolutionary change. Proceedings. Biological Sciences / the Royal Society. 281: 20140115. PMID 24759860 DOI: 10.1098/Rspb.2014.0115  1
2014 Price SA, Schmitz L, Oufiero CE, Eytan RI, Dornburg A, Smith WL, Friedman M, Near TJ, Wainwright PC. Two waves of colonization straddling the K-Pg boundary formed the modern reef fish fauna. Proceedings. Biological Sciences / the Royal Society. 281: 20140321. PMID 24695431 DOI: 10.1098/Rspb.2014.0321  1
2014 Near TJ, Dornburg A, Tokita M, Suzuki D, Brandley MC, Friedman M. Boom and bust: ancient and recent diversification in bichirs (Polypteridae: Actinopterygii), a relictual lineage of ray-finned fishes. Evolution; International Journal of Organic Evolution. 68: 1014-26. PMID 24274466 DOI: 10.1111/Evo.12323  1
2014 Robison HW, Cashner RC, Raley ME, Near TJ. A new species of darter from the Ouachita Highlands in Arkansas related to Percina nasuta (Percidae: Etheostomatinae) Bulletin of the Peabody Museum of Natural History. 55: 237-252. DOI: 10.3374/014.055.0211  1
2013 Bossu CM, Beaulieu JM, Ceas PA, Near TJ. Explicit tests of palaeodrainage connections of southeastern North America and the historical biogeography of Orangethroat Darters (Percidae: Etheostoma: Ceasia). Molecular Ecology. 22: 5397-417. PMID 24118264 DOI: 10.1111/Mec.12485  1
2013 Friedman M, Keck BP, Dornburg A, Eytan RI, Martin CH, Hulsey CD, Wainwright PC, Near TJ. Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting. Proceedings. Biological Sciences / the Royal Society. 280: 20131733. PMID 24048155 DOI: 10.1098/Rspb.2013.1733  1
2013 Friedman M, Johanson Z, Harrington RC, Near TJ, Graham MR. An early fossil remora (Echeneoidea) reveals the evolutionary assembly of the adhesion disc. Proceedings. Biological Sciences / the Royal Society. 280: 20131200. PMID 23864599 DOI: 10.1098/Rspb.2013.1200  1
2013 Near TJ, Dornburg A, Eytan RI, Keck BP, Smith WL, Kuhn KL, Moore JA, Price SA, Burbrink FT, Friedman M, Wainwright PC. Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes. Proceedings of the National Academy of Sciences of the United States of America. 110: 12738-43. PMID 23858462 DOI: 10.1073/Pnas.1304661110  1
2013 Niemiller ML, McCandless JR, Reynolds RG, Caddle J, Near TJ, Tillquist CR, Pearson WD, Fitzpatrick BM. Effects of climatic and geological processes during the pleistocene on the evolutionary history of the northern cavefish, Amblyopsis spelaea (teleostei: amblyopsidae). Evolution; International Journal of Organic Evolution. 67: 1011-25. PMID 23550752 DOI: 10.1111/Evo.12017  1
2013 Niemiller ML, Fitzpatrick BM, Shah P, Schmitz L, Near TJ. Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae). Evolution; International Journal of Organic Evolution. 67: 732-48. PMID 23461324 DOI: 10.1111/J.1558-5646.2012.01822.X  1
2013 Bossu CM, Near TJ. Characterization of a contemporaneous hybrid zone between two darter species (Etheostoma bison and E. caeruleum) in the Buffalo River System Genetica. 141: 75-88. PMID 23443763 DOI: 10.1007/S10709-013-9707-8  1
2013 Price SA, Tavera JJ, Near TJ, Wainwright PC. Elevated rates of morphological and functional diversification in reef-dwelling haemulid fishes. Evolution; International Journal of Organic Evolution. 67: 417-28. PMID 23356614 DOI: 10.1111/J.1558-5646.2012.01773.X  1
2013 Harrington RC, Benavides E, Near TJ. Phylogenetic inference of nuptial trait evolution in the context of asymmetrical introgression in north american darters (teleostei) Evolution. 67: 388-402. PMID 23356612 DOI: 10.1111/J.1558-5646.2012.01797.X  1
2013 Near TJ, Keck BP. Free from mitochondrial DNA: Nuclear genes and the inference of species trees among closely related darter lineages (Teleostei: Percidae: Etheostomatinae) Molecular Phylogenetics and Evolution. 66: 868-876. PMID 23178741 DOI: 10.1016/J.Ympev.2012.11.009  1
2013 Keck BP, Near TJ. A new species of Nothonotus darter (Teleostei: Percidae) from the Caney Fork in Tennessee, USA Bulletin of the Peabody Museum of Natural History. 54: 3-21. DOI: 10.3374/014.054.0101  1
2013 Niemiller ML, Graening GO, Fenolio DB, Godwin JC, Cooley JR, Pearson WD, Fitzpatrick BM, Near TJ. Doomed before they are described? The need for conservation assessments of cryptic species complexes using an amblyopsid cavefish (Amblyopsidae: Typhlichthys) as a case study Biodiversity and Conservation. 22: 1799-1820. DOI: 10.1007/S10531-013-0514-4  1
2012 Dornburg A, Moore JA, Webster R, Warren DL, Brandley MC, Iglesias TL, Wainwright PC, Near TJ. Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei: Beryciformes: Holocentridae): reconciling more than 100 years of taxonomic confusion. Molecular Phylogenetics and Evolution. 65: 727-38. PMID 22884866 DOI: 10.1016/J.Ympev.2012.07.020  1
2012 Near TJ, Eytan RI, Dornburg A, Kuhn KL, Moore JA, Davis MP, Wainwright PC, Friedman M, Smith WL. Resolution of ray-finned fish phylogeny and timing of diversification. Proceedings of the National Academy of Sciences of the United States of America. 109: 13698-703. PMID 22869754 DOI: 10.1073/Pnas.1206625109  1
2012 Wainwright PC, Smith WL, Price SA, Tang KL, Sparks JS, Ferry LA, Kuhn KL, Eytan RI, Near TJ. The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond. Systematic Biology. 61: 1001-27. PMID 22744773 DOI: 10.1093/Sysbio/Sys060  1
2012 Jones CD, Near TJ. The reproductive behaviour of Pogonophryne scotti confirms widespread egg-guarding parental care among Antarctic notothenioids. Journal of Fish Biology. 80: 2629-35. PMID 22650438 DOI: 10.1111/J.1095-8649.2012.03282.X  1
2012 Wright JJ, David SR, Near TJ. Gene trees, species trees, and morphology converge on a similar phylogeny of living gars (Actinopterygii: Holostei: Lepisosteidae), an ancient clade of ray-finned fishes. Molecular Phylogenetics and Evolution. 63: 848-56. PMID 22445447 DOI: 10.1016/J.Ympev.2012.02.033  1
2012 Niemiller ML, Near TJ, Fitzpatrick BM. Delimiting species using multilocus data: diagnosing cryptic diversity in the southern cavefish, Typhlichthys subterraneus (Teleostei: Amblyopsidae). Evolution; International Journal of Organic Evolution. 66: 846-66. PMID 22380444 DOI: 10.1111/J.1558-5646.2011.01480.X  1
2012 Kelly NB, Near TJ, Alonzo SH. Diversification of egg-deposition behaviours and the evolution of male parental care in darters (Teleostei: Percidae: Etheostomatinae). Journal of Evolutionary Biology. 25: 836-46. PMID 22356511 DOI: 10.1111/J.1420-9101.2012.02473.X  1
2012 Near TJ, Dornburg A, Kuhn KL, Eastman JT, Pennington JN, Patarnello T, Zane L, Fernández DA, Jones CD. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences of the United States of America. 109: 3434-9. PMID 22331888 DOI: 10.1073/Pnas.1115169109  1
2012 Near TJ, Sandel M, Kuhn KL, Unmack PJ, Wainwright PC, Smith WL. Nuclear gene-inferred phylogenies resolve the relationships of the enigmatic Pygmy Sunfishes, Elassoma (Teleostei: Percomorpha). Molecular Phylogenetics and Evolution. 63: 388-95. PMID 22293156 DOI: 10.1016/J.Ympev.2012.01.011  1
2012 Near TJ, Keck BP. AFLPs do not support deep phylogenetic relationships among darters (Teleostei: Percidae: Etheostomatinae) Heredity. 108: 647-648. PMID 22234248 DOI: 10.1038/Hdy.2011.130  1
2012 Lau YT, Parker SK, Near TJ, Detrich HW. Evolution and function of the globin intergenic regulatory regions of the antarctic dragonfishes (Notothenioidei: Bathydraconidae) Molecular Biology and Evolution. 29: 1071-1080. PMID 22075115 DOI: 10.1093/Molbev/Msr278  1
2012 Dornburg A, Brandley MC, McGowen MR, Near TJ. Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea). Molecular Biology and Evolution. 29: 721-36. PMID 21926070 DOI: 10.1093/Molbev/Msr228  1
2012 Harrington RC, Near TJ. Phylogenetic and coalescent strategies of species delimitation in snubnose darters (Percidae: Etheostoma) Systematic Biology. 61: 63-79. PMID 21828082 DOI: 10.1093/Sysbio/Syr077  1
2011 Near TJ, Bossu CM, Bradburd GS, Carlson RL, Harrington RC, Hollingsworth PR, Keck BP, Etnier DA. Phylogeny and temporal diversification of darters (Percidae: Etheostomatinae). Systematic Biology. 60: 565-95. PMID 21775340 DOI: 10.1093/Sysbio/Syr052  1
2011 Dornburg A, Sidlauskas B, Santini F, Sorenson L, Near TJ, Alfaro ME. The influence of an innovative locomotor strategy on the phenotypic diversification of triggerfish (family: Balistidae). Evolution; International Journal of Organic Evolution. 65: 1912-26. PMID 21729047 DOI: 10.1111/J.1558-5646.2011.01275.X  1
2011 Dornburg A, Beaulieu JM, Oliver JC, Near TJ. Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation. Systematic Biology. 60: 519-27. PMID 21436104 DOI: 10.1093/Sysbio/Syr019  1
2011 Price SA, Holzman R, Near TJ, Wainwright PC. Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes. Ecology Letters. 14: 462-9. PMID 21385297 DOI: 10.1111/J.1461-0248.2011.01607.X  1
2011 Near TJ. Fossil calibrations and molecular dating of the tree of life Annual Review of Ecology, Evolution, and Systematics. 42. DOI: 10.1146/Annurev-Ecolsys-102710-145031  1
2011 Kuhn KL, Near TJ, Detrich HW, Eastman JT. Biology of the Antarctic dragonfish Vomeridens infuscipinnis (Notothenioidei: Bathydraconidae) Antarctic Science. 23: 18-26. DOI: 10.1017/S095410201000060X  1
2010 Keck BP, Near TJ. A young clade repeating an old pattern: Diversity in Nothonotus darters (Teleostei: Percidae) endemic to the Cumberland River Molecular Ecology. 19: 5030-5042. PMID 20946590 DOI: 10.1111/J.1365-294X.2010.04866.X  1
2010 Price SA, Wainwright PC, Bellwood DR, Kazancioglu E, Collar DC, Near TJ. Functional innovations and morphological diversification in parrotfish. Evolution; International Journal of Organic Evolution. 64: 3057-68. PMID 20497217 DOI: 10.1111/J.1558-5646.2010.01036.X  1
2010 Harmon LJ, Losos JB, Jonathan Davies T, Gillespie RG, Gittleman JL, Bryan Jennings W, Kozak KH, McPeek MA, Moreno-Roark F, Near TJ, Purvis A, Ricklefs RE, Schluter D, Schulte Ii JA, Seehausen O, et al. Early bursts of body size and shape evolution are rare in comparative data. Evolution; International Journal of Organic Evolution. 64: 2385-96. PMID 20455932 DOI: 10.1111/J.1558-5646.2010.01025.X  1
2010 Keck BP, Near TJ. Geographic and temporal aspects of mitochondrial replacement in Nothonotus darters (Teleostei: Percidae: Etheostomatinae) Evolution. 64: 1410-1428. PMID 19930456 DOI: 10.1111/J.1558-5646.2009.00901.X  1
2010 Ghigliotti L, Near TJ, Ferrando S, Vacchi M, Pisano E. Cytogenetic diversity in the Antarctic plunderfishes (Notothenioidei: Artedidraconidae) Antarctic Science. 22: 805-814. DOI: 10.1017/S0954102010000660  1
2010 Ashton MJ, Near TJ. Threatened fishes of the world: Percina bimaculata (Haldeman, 1844) (Percidae: Etheostomatinae) Environmental Biology of Fishes. 88: 37-38. DOI: 10.1007/S10641-010-9611-3  1
2009 Bossu CM, Near TJ. Gene trees reveal repeated instances of mitochondrial DNA Introgression in orangethroat darters (percidae: etheostoma) Systematic Biology. 58: 114-129. PMID 20525572 DOI: 10.1093/Sysbio/Syp014  1
2009 Kazancioglu E, Near TJ, Hanel R, Wainwright PC. Influence of sexual selection and feeding functional morphology on diversification rate of parrotfishes (Scaridae). Proceedings. Biological Sciences / the Royal Society. 276: 3439-46. PMID 19586949 DOI: 10.1098/Rspb.2009.0876  1
2009 Heckman KL, Near TJ, Alonzo SH. Phylogenetic relationships among Boleosoma darter species (Percidae: Etheostoma). Molecular Phylogenetics and Evolution. 53: 249-57. PMID 19490945 DOI: 10.1016/J.Ympev.2009.05.027  1
2009 Near TJ. Conflict and resolution between phylogenies inferred from molecular and phenotypic data sets for hagfish, lampreys, and gnathostomes Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 312: 749-761. PMID 19402130 DOI: 10.1002/Jez.B.21293  1
2009 Carlson RL, Wainwright PC, Near TJ. Relationship between species co-occurrence and rate of morphological change in Percina darters (Percidae: Etheostomatinae). Evolution; International Journal of Organic Evolution. 63: 767-78. PMID 19220454 DOI: 10.1111/J.1558-5646.2008.00576.X  1
2009 Collar DC, O'Meara BC, Wainwright PC, Near TJ. Piscivory limits diversification of feeding morphology in centrarchid fishes. Evolution; International Journal of Organic Evolution. 63: 1557-73. PMID 19154390 DOI: 10.1111/J.1558-5646.2009.00626.X  1
2009 Kawahara R, Miya M, Mabuchi K, Near TJ, Nishida M. Stickleback phylogenies resolved: Evidence from mitochondrial genomes and 11 nuclear genes Molecular Phylogenetics and Evolution. 50: 401-404. PMID 19027080 DOI: 10.1016/J.Ympev.2008.10.014  1
2009 Hollingsworth PR, Near TJ. Temporal patterns of diversification and microendemism in Eastern Highland endemic barcheek darters (Percidae: Etheostomatinae) Evolution. 63: 228-243. PMID 18826450 DOI: 10.1111/J.1558-5646.2008.00531.X  1
2009 Eakin RR, Eastman JT, Near TJ. A new species and a molecular phylogenetic analysis of the antarctic fish genus pogonophryne (Notothenioidei: Artedidraconidae) Copeia. 705-713. DOI: 10.1643/Ci-09-024  1
2009 Keck BP, Near TJ. Patterns of natural hybridization in darters (Percidae: Etheostomatinae) Copeia. 758-773. DOI: 10.1643/Ci-09-008  1
2009 Kuhn KL, Near TJ, Jones CD, Eastman JT. Aspects of the biology and population genetics of the antarctic nototheniid fish trematomus nicolai Copeia. 320-327. DOI: 10.1643/Cg-08-087  1
2009 Kuhn KL, Near TJ. Phylogeny of Trematomus (Notothenioidei: Nototheniidae) inferred from mitochondrial and nuclear gene sequences Antarctic Science. 21: 565-570. DOI: 10.1017/S0954102009990253  1
2009 Near TJ, Jones CD, Eastman JT. Geographic intraspecific variation in buoyancy within Antarctic notothenioid fishes Antarctic Science. 21: 123-129. DOI: 10.1017/S0954102008001661  1
2009 Pasachnik SA, Fitzpatrick BM, Near TJ, Echternacht AC. Gene flow between an endangered endemic iguana, and its wide spread relative, on the island of Utila, Honduras: When is hybridization a threat? Conservation Genetics. 10: 1247-1254. DOI: 10.1007/S10592-008-9692-0  1
2009 Near TJ, Koppelman JB. Species Diversity, Phylogeny and Phylogeography of Centrarchidae Centrarchid Fishes: Diversity, Biology, and Conservation. 1-38. DOI: 10.1002/9781444316032.ch1  1
2008 Near TJ, Cheng CHC. Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): Inferences from mitochondrial and nuclear gene sequences Molecular Phylogenetics and Evolution. 47: 832-840. PMID 18249562 DOI: 10.1016/J.Ympev.2007.11.027  1
2008 Bolnick DI, Turelli M, López-Fernández H, Wainwright PC, Near TJ. Accelerated mitochondrial evolution and "Darwin's corollary": asymmetric viability of reciprocal F1 hybrids in Centrarchid fishes. Genetics. 178: 1037-48. PMID 18245356 DOI: 10.1534/Genetics.107.081364  1
2008 Keck BP, Near TJ. Assessing phylogenetic resolution among mitochondrial, nuclear, and morphological datasets in Nothonotus darters (Teleostei: Percidae) Molecular Phylogenetics and Evolution. 46: 708-720. PMID 17920301 DOI: 10.1016/J.Ympev.2007.08.015  1
2008 Near TJ, Meylan PA, Shaffer HB. Caveats on the use of fossil calibrations for molecular dating: A reply to Parham and Irmis American Naturalist. 171: 137-140. DOI: 10.1086/524201  1
2008 Jones CD, Eric Anderson M, Balushkin AV, Duhamel G, Eakin RR, Eastman JT, Kuhn KL, Lecointre G, Near TJ, North AW, Stein DL, Vacchi M, William Detrich H. Diversity, relative abundance, new locality records and population structure of Antarctic demersal fishes from the northern Scotia Arc islands and Bouvetøya Polar Biology. 31: 1481-1497. DOI: 10.1007/S00300-008-0489-X  1
2007 Mittelbach GG, Schemske DW, Cornell HV, Allen AP, Brown JM, Bush MB, Harrison SP, Hurlbert AH, Knowlton N, Lessios HA, McCain CM, McCune AR, McDade LA, McPeek MA, Near TJ, et al. Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecology Letters. 10: 315-31. PMID 17355570 DOI: 10.1111/J.1461-0248.2007.01020.X  1
2007 Page LM, Near TJ. A new darter from the upper Tennessee river drainage related to Percina macrocephala (Percidae: Etheostomatinae) Copeia. 605-613. DOI: 10.1643/0045-8511(2007)2007[605:Andftu]2.0.Co;2  1
2007 Near TJ, Kendrick BJ, William Detrich H, Jones CD. Confirmation of neutral buoyancy in Aethotaxis mitopteryx DeWitt (Notothenioidei: Nototheniidae) Polar Biology. 30: 443-447. DOI: 10.1007/S00300-006-0201-Y  1
2006 Near TJ, Parker SK, Detrich HW. A genomic fossil reveals key steps in hemoglobin loss by the Antarctic icefishes Molecular Biology and Evolution. 23: 2008-2016. PMID 16870682 DOI: 10.1093/Molbev/Msl071  1
2006 Near TJ, Hardman M. Phylogenetic relationships of Noturus stanauli and N. crypticus (Siluriformes: Ictaluridae), two imperiled freshwater fish species from the Southeastern United States Copeia. 378-383. DOI: 10.1643/0045-8511(2006)2006[378:Pronsa]2.0.Co;2  1
2006 Bolnick DI, Near TJ, Wainwright PC. Body size divergence promotes post-zygotic reproductive isolation in centrarchids Evolutionary Ecology Research. 8: 903-913.  1
2005 Collar DC, Near TJ, Wainwright PC. Comparative analysis of morphological diversity: does disparity accumulate at the same rate in two lineages of centrarchid fishes? Evolution; International Journal of Organic Evolution. 59: 1783-94. PMID 16329247 DOI: 10.1111/J.0014-3820.2005.Tb01826.X  1
2005 Near TJ, Bolnick DI, Wainwright PC. Fossil calibrations and molecular divergence time estimates in centrarchid fishes (Teleostei: Centrarchidae). Evolution; International Journal of Organic Evolution. 59: 1768-82. PMID 16329246 DOI: 10.1111/J.0014-3820.2005.Tb01825.X  1
2005 Bolnick DI, Near TJ. Tempo of hybrid inviability in centrarchid fishes (Teleostei: Centrarchidae). Evolution; International Journal of Organic Evolution. 59: 1754-67. PMID 16329245 DOI: 10.1111/J.0014-3820.2005.Tb01824.X  1
2005 Near TJ, Keck BP. Dispersal, vicariance, and timing of diversification in Nothonotus darters Molecular Ecology. 14: 3485-3496. PMID 16156817 DOI: 10.1111/J.1365-294X.2005.02671.X  1
2005 Near TJ, Meylan PA, Shaffer HB. Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles. The American Naturalist. 165: 137-46. PMID 15729646 DOI: 10.1086/427734  1
2004 Near TJ, Benard MF. Rapid allopatric speciation in logperch darters (Percidae: Percina). Evolution; International Journal of Organic Evolution. 58: 2798-808. PMID 15696757 DOI: 10.1111/J.0014-3820.2004.Tb01631.X  1
2004 Near TJ, Sanderson MJ. Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 359: 1477-83. PMID 15519966 DOI: 10.1098/Rstb.2004.1523  1
2004 Near TJ, Pesavento JJ, Cheng CH. Phylogenetic investigations of Antarctic notothenioid fishes (Perciformes: Notothenioidei) using complete gene sequences of the mitochondrial encoded 16S rRNA. Molecular Phylogenetics and Evolution. 32: 881-91. PMID 15288063 DOI: 10.1016/J.Ympev.2004.01.002  1
2004 Near TJ, Bolnick DI, Wainwright PC. Investigating phylogenetic relationships of sunfishes and black basses (Actinopterygii: Centrarchidae) using DNA sequences from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution. 32: 344-57. PMID 15186819 DOI: 10.1016/J.Ympev.2003.12.010  1
2004 Hulsey CD, García De León FJ, Johnson YS, Hendrickson DA, Near TJ. Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary Molecular Phylogenetics and Evolution. 31: 754-764. PMID 15062808 DOI: 10.1016/J.Ympev.2003.08.024  1
2004 Near TJ. Estimating divergence times of notothenioid fishes using a fossil-calibrated molecular clock Antarctic Science. 16: 37-44. DOI: 10.1017/S0954102004001798  1
2003 Near TJ, Kassler TW, Koppelman JB, Dillman CB, Philipp DP. Speciation in North American black basses, Micropterus (Actinopterygii: Centrarchidae) Evolution. 57: 1610-1621. PMID 12940365 DOI: 10.1111/J.0014-3820.2003.Tb00368.X  1
2003 Cheng CHC, Chen L, Near TJ, Jin Y. Functional Antifreeze Glycoprotein Genes in Temperate-Water New Zealand Nototheniid Fish Infer an Antarctic Evolutionary Origin Molecular Biology and Evolution. 20: 1897-1908. PMID 12885956 DOI: 10.1093/Molbev/Msg208  1
2003 Near TJ, Pesavento JJ, Cheng CH. Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae). Molecular Phylogenetics and Evolution. 28: 87-98. PMID 12801473 DOI: 10.1016/S1055-7903(03)00029-0  1
2003 Page LM, Hardman M, Near TJ. Phylogenetic relationships of barcheek darters (Percidae: Etheostoma, subgenus Catonotus) with descriptions of two new species Copeia. 512-530. DOI: 10.1643/Ci-02-259R  1
2003 Near TJ, Russo SE, Jones CD, DeVries AL. Ontogenetic shift in buoyancy and habitat in the Antarctic toothfish, Dissostichus mawsoni (Perciformes: Nototheniidae) Polar Biology. 26: 124-128. DOI: 10.1007/S00300-002-0459-7  1
2002 Near TJ. Acanthocephalan phylogeny and the evolution of parasitism. Integrative and Comparative Biology. 42: 668-77. PMID 21708763 DOI: 10.1093/Icb/42.3.668  1
2002 Near TJ. Phylogenetic relationships of Percina (Percidae: Etheostomatinae) Copeia. 1-14. DOI: 10.1643/0045-8511(2002)002[0001:Proppe]2.0.Co;2  1
2002 Kassler TW, Koppelman JB, Near TJ, Dillman CB, Levengood JM, Swofford DL, VanOrman JL, Claussen JE, Philipp DP. Molecular and morphological analyses of the black basses: Implications for taxonomy and conservation American Fisheries Society Symposium. 2002: 291-322.  1
2001 Near TJ, Page LM, Mayden RL. Intraspecific phylogeography of Percina evides (Percidae: Etheostomatinae): an additional test of the Central Highlands pre-Pleistocene vicariance hypothesis. Molecular Ecology. 10: 2235-40. PMID 11555265 DOI: 10.1046/J.1365-294X.2001.01362.X  1
2000 Near TJ, Porterfield JC, Page LM. Evolution of cytochrome b and the molecular systematics of Ammocrypta (Percidae: Etheostomatinae) Copeia. 701-711. DOI: 10.1643/0045-8511(2000)000[0701:Eocbat]2.0.Co;2  1
1999 Porterfield JC, Page LM, Near TJ. Phylogenetic relationships among fantail darters (Percidae: Etheostoma: Catonotus): Total evidence analysis of morphological and molecular data Copeia. 551-564. DOI: 10.2307/1447589  1
1998 Song CB, Near TJ, Page LM. Phylogenetic relations among percid fishes as inferred from mitochondrial cytochrome b DNA sequence data. Molecular Phylogenetics and Evolution. 10: 343-53. PMID 10051387 DOI: 10.1006/Mpev.1998.0542  1
1998 Near TJ, Garey JR, Nadler SA. Phylogenetic relationships of the Acanthocephala inferred from 18S ribosomal DNA sequences. Molecular Phylogenetics and Evolution. 10: 287-98. PMID 10051382 DOI: 10.1006/Mpev.1998.0569  1
1998 Garey JR, Schmidt-Rhaesa A, Near TJ, Nadler SA. The evolutionary relationships of rotifers and acanthocephalans Hydrobiologia. 387: 83-91. DOI: 10.1023/A:1017060902909  1
1996 Garey JR, Near TJ, Nonnemacher MR, Nadler SA. Molecular evidence for Acanthocephala as a subtaxon of Rotifera. Journal of Molecular Evolution. 43: 287-92. PMID 8703095 DOI: 10.1007/Bf02338837  1
1995 Nadler SA, Lindquist RL, Near TJ. Genetic structure of midwestern Ascaris suum populations: a comparison of isoenzyme and RAPD markers. The Journal of Parasitology. 81: 385-94. PMID 7776123 DOI: 10.2307/3283820  1
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