Anne Yoder - Publications

Affiliations: 
2003-2005 Ecology and Evolutionary Biology Yale University, New Haven, CT 

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 van Elst T, Sgarlata GM, Schüßler D, Tiley GP, Poelstra JW, Scheumann M, Blanco MB, Aleixo-Pais IG, Rina Evasoa M, Ganzhorn JU, Goodman SM, Hasiniaina AF, Hending D, Hohenlohe PA, Ibouroi MT, ... ... Yoder AD, et al. Integrative taxonomy clarifies the evolution of a cryptic primate clade. Nature Ecology & Evolution. PMID 39333396 DOI: 10.1038/s41559-024-02547-w  0.453
2023 Paietta EN, Kraberger S, Regney M, Custer JM, Ehmke E, Yoder AD, Varsani A. Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs (). Viruses. 16. PMID 38257737 DOI: 10.3390/v16010037  0.352
2023 van Elst T, Schüßler D, Rakotondravony R, Rovanirina VST, Veillet A, Hohenlohe PA, Ratsimbazafy JH, Rasoloarison RM, Rasoloharijaona S, Randrianambinina B, Ramilison ML, Yoder AD, Louis EE, Radespiel U. Diversification processes in Gerp's mouse lemur demonstrate the importance of rivers and altitude as biogeographic barriers in Madagascar's humid rainforests. Ecology and Evolution. 13: e10254. PMID 37408627 DOI: 10.1002/ece3.10254  0.472
2023 Shao Y, Zhou L, Li F, Zhao L, Zhang BL, Shao F, Chen JW, Chen CY, Bi X, Zhuang XL, Zhu HL, Hu J, Sun Z, Li X, Wang D, ... ... Yoder AD, et al. Phylogenomic analyses provide insights into primate evolution. Science (New York, N.Y.). 380: 913-924. PMID 37262173 DOI: 10.1126/science.abn6919  0.337
2023 Tiley GP, Flouri T, Jiao X, Poelstra JW, Xu B, Zhu T, Rannala B, Yoder AD, Yang Z. Estimation of species divergence times in presence of cross-species gene flow. Systematic Biology. PMID 36961245 DOI: 10.1093/sysbio/syad015  0.742
2022 Paietta EN, Kraberger S, Custer JM, Vargas KL, Van Doorslaer K, Yoder AD, Varsani A. Identification of diverse papillomaviruses in captive black-and-white ruffed lemurs (Varecia variegata). Archives of Virology. 168: 13. PMID 36576610 DOI: 10.1007/s00705-022-05679-1  0.337
2022 Poelstra JW, Montero BK, Lüdemann J, Yang Z, Rakotondranary SJ, Hohenlohe P, Stetter N, Ganzhorn JU, Yoder AD. RADseq data reveal a lack of admixture in a mouse lemur contact zone contrary to previous microsatellite results. Proceedings. Biological Sciences. 289: 20220596. PMID 35946151 DOI: 10.1098/rspb.2022.0596  0.761
2022 Tiley GP, van Elst T, Teixeira H, Schüßler D, Salmona J, Blanco MB, Ralison JM, Randrianambinina B, Rasoloarison RM, Stahlke AR, Hohenlohe PA, Chikhi L, Louis EE, Radespiel U, Yoder AD. Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests. Molecular Ecology. PMID 35880414 DOI: 10.1111/mec.16632  0.359
2022 Teixeira H, van Elst T, Ramsay MS, Rakotondravony R, Salmona J, Yoder AD, Radespiel U. RADseq Data Suggest Occasional Hybridization between and in Northwestern Madagascar. Genes. 13. PMID 35627298 DOI: 10.3390/genes13050913  0.447
2021 Andriambeloson JB, Blanco MB, Andriantsalohimisantatra A, Rivoharison TV, Walker N, Birkinshaw C, Yoder AD. Living in tiny fragments: a glimpse at the ecology of Goodman's mouse lemurs (Microcebus lehilahytsara) in the relic forest of Ankafobe, Central Highlands, Madagascar. Primates; Journal of Primatology. PMID 34541622 DOI: 10.1007/s10329-021-00947-1  0.386
2021 Campbell CR, Tiley GP, Poelstra JW, Hunnicutt KE, Larsen PA, Lee HJ, Thorne JL, Dos Reis M, Yoder AD. Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur. Heredity. PMID 34272504 DOI: 10.1038/s41437-021-00446-5  0.691
2021 Marciniak S, Mughal MR, Godfrey LR, Bankoff RJ, Randrianatoandro H, Crowley BE, Bergey CM, Muldoon KM, Randrianasy J, Raharivololona BM, Schuster SC, Malhi RS, Yoder AD, Louis EE, Kistler L, et al. Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, "subfossil" koala lemur . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34162703 DOI: 10.1073/pnas.2022117118  0.373
2021 Yoder AD, Tiley GP. The challenge and promise of estimating the de novo mutation rate from whole-genome comparisons among closely related individuals. Molecular Ecology. PMID 34062029 DOI: 10.1111/mec.16007  0.36
2020 Schüßler D, Blanco MB, Salmona J, Poelstra J, Andriambeloson JB, Miller A, Randrianambinina B, Rasolofoson DW, Mantilla-Contreras J, Chikhi L, Louis EE, Yoder AD, Radespiel U. Ecology and morphology of mouse lemurs (Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species. American Journal of Primatology. e23180. PMID 32716088 DOI: 10.1002/Ajp.23180  0.735
2020 Tiley GP, Poelstra JW, Dos Reis M, Yang Z, Yoder AD. Molecular Clocks without Rocks: New Solutions for Old Problems. Trends in Genetics : Tig. PMID 32709458 DOI: 10.1016/J.Tig.2020.06.002  0.727
2020 Poelstra J, Salmona J, Tiley GP, Schüßler D, Blanco MB, Andriambeloson JB, Bouchez O, Campbell CR, Etter PD, Hohenlohe PA, Hunnicutt KE, Iribar A, Johnson EA, Kappeler PM, Larsen PA, ... ... Yoder AD, et al. Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent. Systematic Biology. PMID 32642760 DOI: 10.1093/Sysbio/Syaa053  0.772
2019 Hunnicutt KE, Tiley GP, Williams RC, Larsen PA, Blanco MB, Rasoloarison RM, Campbell CR, Zhu K, Weisrock DW, Matsunami H, Yoder AD. Comparative genomic analysis of the pheromone receptor Class 1 family (V1R) reveals extreme complexity in mouse lemurs (genus, Microcebus) and a chromosomal hotspot across mammals. Genome Biology and Evolution. PMID 31555816 DOI: 10.1093/Gbe/Evz200  0.338
2019 Williams RC, Blanco MB, Poelstra JW, Hunnicutt KE, Comeault AA, Yoder AD. Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar's hibernating dwarf lemurs. Heredity. PMID 31435007 DOI: 10.1038/S41437-019-0260-9  0.717
2018 Yoder AD, Poelstra J, Tiley GP, Williams R. Neutral Theory is the Foundation of Conservation Genetics. Molecular Biology and Evolution. PMID 29669008 DOI: 10.1093/molbev/msy076  0.701
2018 Dos Reis M, Gunnell GF, Barba-Montoya J, Wilkins A, Yang Z, Yoder AD. Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case. Systematic Biology. PMID 29342307 DOI: 10.1093/Sysbio/Syy001  0.304
2018 Faherty SL, Villanueva-Cañas JL, Blanco MB, Albà MM, Yoder AD. Transcriptomics in the wild: hibernation physiology in free-ranging dwarf lemurs. Molecular Ecology. PMID 29319912 DOI: 10.1111/Mec.14483  0.32
2018 Campbell CR, Poelstra JW, Yoder AD. What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species Biological Journal of the Linnean Society. 124: 561-583. DOI: 10.1093/BIOLINNEAN/BLY063  0.302
2017 Larsen PA, Harris RA, Liu Y, Murali SC, Campbell CR, Brown AD, Sullivan BA, Shelton J, Brown SJ, Raveendran M, Dudchenko O, Machol I, Durand NC, Shamim MS, Aiden EL, ... ... Yoder AD, et al. Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). Bmc Biology. 15: 110. PMID 29145861 DOI: 10.1186/S12915-017-0439-6  0.306
2016 Yoder AD, Campbell CR, Blanco MB, Dos Reis M, Ganzhorn JU, Goodman SM, Hunnicutt KE, Larsen PA, Kappeler PM, Rasoloarison RM, Ralison JM, Swofford DL, Weisrock DW. Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432945 DOI: 10.1073/Pnas.1601081113  0.42
2016 Hotaling S, Foley ME, Lawrence NM, Bocanegra J, Blanco MB, Rasoloarison R, Kappeler PM, Barrett MA, Yoder AD, Weisrock DW. Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs. Molecular Ecology. PMID 26946180 DOI: 10.1111/Mec.13604  0.481
2016 Nunziata SO, Wallenhorst P, Barrett MA, Junge RE, Yoder AD, Weisrock DW. Population and Conservation Genetics in an Endangered Lemur, Indri indri, Across Three Forest Reserves in Madagascar International Journal of Primatology. 37: 688-702. DOI: 10.1007/S10764-016-9932-Y  0.311
2015 Pabijan M, Brown JL, Chan LM, Rakotondravony HA, Raselimanana AP, Yoder AD, Glaw F, Vences M. Phylogeography of the arid-adapted Malagasy bullfrog, Laliostoma labrosum, influenced by past connectivity and habitat stability. Molecular Phylogenetics and Evolution. 92: 11-24. PMID 26044948 DOI: 10.1016/J.Ympev.2015.05.018  0.492
2015 Brown JL, Yoder AD. Shifting ranges and conservation challenges for lemurs in the face of climate change. Ecology and Evolution. 5: 1131-42. PMID 25859320 DOI: 10.1002/ece3.1418  0.377
2015 Blair C, Noonan BP, Brown JL, Raselimanana AP, Vences M, Yoder AD. Multilocus phylogenetic and geospatial analyses illuminate diversification patterns and the biogeographic history of Malagasy endemic plated lizards (Gerrhosauridae: Zonosaurinae). Journal of Evolutionary Biology. 28: 481-92. PMID 25611210 DOI: 10.1111/Jeb.12586  0.442
2015 Kistler L, Ratan A, Godfrey LR, Crowley BE, Hughes CE, Lei R, Cui Y, Wood ML, Muldoon KM, Andriamialison H, McGraw JJ, Tomsho LP, Schuster SC, Miller W, Louis EE, ... Yoder AD, et al. Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs. Journal of Human Evolution. 79: 45-54. PMID 25523037 DOI: 10.1016/J.Jhevol.2014.06.016  0.455
2014 Jenkins RK, Tognelli MF, Bowles P, Cox N, Brown JL, Chan L, Andreone F, Andriamazava A, Andriantsimanarilafy RR, Anjeriniaina M, Bora P, Brady LD, Hantalalaina EF, Glaw F, Griffiths RA, ... ... Yoder AD, et al. Extinction risks and the conservation of Madagascar's reptiles. Plos One. 9: e100173. PMID 25111137 DOI: 10.1371/Journal.Pone.0100173  0.304
2014 Katzourakis A, Aiewsakun P, Jia H, Wolfe ND, LeBreton M, Yoder AD, Switzer WM. Discovery of prosimian and afrotherian foamy viruses and potential cross species transmissions amidst stable and ancient mammalian co-evolution. Retrovirology. 11: 61. PMID 25091111 DOI: 10.1186/1742-4690-11-61  0.366
2014 Villanueva-Cañas JL, Faherty SL, Yoder AD, Albà MM. Comparative genomics of mammalian hibernators using gene networks. Integrative and Comparative Biology. 54: 452-62. PMID 24881044 DOI: 10.1093/icb/icu048  0.317
2014 Nowak MD, Haller BC, Yoder AD. The founding of Mauritian endemic coffee trees by a synchronous long-distance dispersal event. Journal of Evolutionary Biology. 27: 1229-39. PMID 24797428 DOI: 10.1111/Jeb.12396  0.397
2014 Blair C, Heckman KL, Russell AL, Yoder AD. Multilocus coalescent analyses reveal the demographic history and speciation patterns of mouse lemur sister species. Bmc Evolutionary Biology. 14: 57. PMID 24661555 DOI: 10.1186/1471-2148-14-57  0.659
2014 Yoder AD. Gene flow happens. Evolutionary Anthropology. 23: 15-7. PMID 24591135 DOI: 10.1002/evan.21397  0.412
2014 Yoder AD, Chan LM, dos Reis M, Larsen PA, Campbell CR, Rasoloarison R, Barrett M, Roos C, Kappeler P, Bielawski J, Yang Z. Molecular evolutionary characterization of a V1R subfamily unique to strepsirrhine primates. Genome Biology and Evolution. 6: 213-27. PMID 24398377 DOI: 10.1093/Gbe/Evu006  0.33
2014 Larsen PA, Hayes CE, Wilkins MA, Gomard Y, Sookhareea R, Yoder AD, Goodman SM. Population genetics of the Mauritian flying fox, Pteropus Niger Acta Chiropterologica. 16: 293-300. DOI: 10.3161/150811014X687251  0.385
2014 Shi JJ, Chan LM, Peel AJ, Lai R, Yoder AD, Goodman SM. A deep divergence time between sister species of eidolon (Pteropodidae) with evidence for widespread Panmixia Acta Chiropterologica. 16: 279-292. DOI: 10.3161/150811014X687242  0.381
2013 Yoder AD. The lemur revolution starts now: the genomic coming of age for a non-model organism. Molecular Phylogenetics and Evolution. 66: 442-52. PMID 22982436 DOI: 10.1016/j.ympev.2012.08.024  0.343
2013 Shi JJ, Chan LM, Rakotomalala Z, Heilman AM, Goodman SM, Yoder AD. Latitude drives diversification in Madagascar's endemic dry forest rodent eliurus myoxinus (subfamily Nesomyinae) Biological Journal of the Linnean Society. 110: 500-517. DOI: 10.1111/Bij.12143  0.368
2013 Rasoloarison RM, Weisrock DW, Yoder AD, Rakotondravony D, Kappeler PM. Two New Species of Mouse Lemurs (Cheirogaleidae: Microcebus) from Eastern Madagascar International Journal of Primatology. 34: 455-469. DOI: 10.1007/S10764-013-9672-1  0.51
2012 Chan LM, Choi D, Raselimanana AP, Rakotondravony HA, Yoder AD. Defining spatial and temporal patterns of phylogeographic structure in Madagascar's iguanid lizards (genus Oplurus). Molecular Ecology. 21: 3839-51. PMID 22694729 DOI: 10.1111/J.1365-294X.2012.05651.X  0.427
2012 Weisrock DW, Smith SD, Chan LM, Biebouw K, Kappeler PM, Yoder AD. Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Molecular Biology and Evolution. 29: 1615-30. PMID 22319174 DOI: 10.1093/Molbev/Mss008  0.5
2012 Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y. Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Genome Research. 22: 602-10. PMID 22207615 DOI: 10.1101/Gr.130468.111  0.5
2011 Chan LM, Goodman SM, Nowak MD, Weisrock DW, Yoder AD. Increased population sampling confirms low genetic divergence among Pteropus (Chiroptera: Pteropodidae) fruit bats of Madagascar and other western Indian Ocean islands. Plos Currents. 3: RRN1226. PMID 21479256 DOI: 10.1371/Currents.Rrn1226  0.505
2010 Goodman SM, Chan LM, Nowak MD, Yoder AD. Phylogeny and biogeography of western Indian Ocean (Chiroptera: Pteropodidae). Journal of Mammalogy. 91: 593-606. PMID 32287379 DOI: 10.1644/09-Mamm-A-283.1  0.405
2010 Weisrock DW, Rasoloarison RM, Fiorentino I, Ralison JM, Goodman SM, Kappeler PM, Yoder AD. Delimiting species without nuclear monophyly in Madagascar's mouse lemurs. Plos One. 5: e9883. PMID 20360988 DOI: 10.1371/Journal.Pone.0009883  0.497
2010 Hickerson MJ, Carstens BC, Cavender-Bares J, Crandall KA, Graham CH, Johnson JB, Rissler L, Victoriano PF, Yoder AD. Phylogeography's past, present, and future: 10 years after Avise, 2000. Molecular Phylogenetics and Evolution. 54: 291-301. PMID 19755165 DOI: 10.1016/J.Ympev.2009.09.016  0.3
2009 O'Brien J, Mariani C, Olson L, Russell AL, Say L, Yoder AD, Hayden TJ. Multiple colonisations of the western Indian Ocean by Pteropus fruit bats (Megachiroptera: Pteropodidae): the furthest islands were colonised first. Molecular Phylogenetics and Evolution. 51: 294-303. PMID 19249376 DOI: 10.1016/J.Ympev.2009.02.010  0.738
2009 Groeneveld LF, Weisrock DW, Rasoloarison RM, Yoder AD, Kappeler PM. Species delimitation in lemurs: multiple genetic loci reveal low levels of species diversity in the genus Cheirogaleus. Bmc Evolutionary Biology. 9: 30. PMID 19193227 DOI: 10.1186/1471-2148-9-30  0.46
2009 Raselimanana AP, Noonan B, Karanth KP, Gauthier J, Yoder AD. Phylogeny and evolution of Malagasy plated lizards. Molecular Phylogenetics and Evolution. 50: 336-44. PMID 18952185 DOI: 10.1016/J.Ympev.2008.10.004  0.507
2008 Horvath JE, Weisrock DW, Embry SL, Fiorentino I, Balhoff JP, Kappeler P, Wray GA, Willard HF, Yoder AD. Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs. Genome Research. 18: 489-99. PMID 18245770 DOI: 10.1101/Gr.7265208  0.382
2008 Riddle B, Dawson MN, Hadly EA, Hafner DJ, Hickerson MJ, Mantooth SJ, Yoder AD. The role of molecular genetics in sculpting the future of integrative biogeography Progress in Physical Geography. 32: 173-202. DOI: 10.1177/0309133308093822  0.342
2007 Heckman KL, Mariani CL, Rasoloarison R, Yoder AD. Multiple nuclear loci reveal patterns of incomplete lineage sorting and complex species history within western mouse lemurs (Microcebus). Molecular Phylogenetics and Evolution. 43: 353-67. PMID 17446091 DOI: 10.1016/J.Ympev.2007.03.005  0.721
2007 Russell AL, Ranivo J, Palkovacs EP, Goodman SM, Yoder AD. Working at the interface of phylogenetics and population genetics: a biogeographical analysis of Triaenops spp. (Chiroptera: Hipposideridae). Molecular Ecology. 16: 839-51. PMID 17284215 DOI: 10.1111/J.1365-294X.2007.03192.X  0.65
2006 Heckman KL, Rasoazanabary E, Machlin E, Godfrey LR, Yoder AD. Incongruence between genetic and morphological diversity in Microcebus griseorufus of Beza Mahafaly. Bmc Evolutionary Biology. 6: 98. PMID 17109740 DOI: 10.1186/1471-2148-6-98  0.509
2005 Yoder AD, Olson LE, Hanley C, Heckman KL, Rasoloarison R, Russell AL, Ranivo J, Soarimalala V, Karanth KP, Raselimanana AP, Goodman SM. A multidimensional approach for detecting species patterns in Malagasy vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 102: 6587-94. PMID 15851666 DOI: 10.1073/Pnas.0502092102  0.656
2005 Karanth KP, Delefosse T, Rakotosamimanana B, Parsons TJ, Yoder AD. Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates. Proceedings of the National Academy of Sciences of the United States of America. 102: 5090-5. PMID 15784742 DOI: 10.1073/pnas.0408354102  0.393
2004 Yoder AD, Yang Z. Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. Molecular Ecology. 13: 757-73. PMID 15012754 DOI: 10.1046/J.1365-294X.2004.02106.X  0.397
2004 Olson LE, Goodman SM, Yoder AD. Illumination of cryptic species boundaries in long-tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale), with new insights into geographic variation and distributional constraints Biological Journal of the Linnean Society. 83: 1-22. DOI: 10.1111/j.1095-8312.2004.00366.x  0.499
2003 Yang Z, Yoder AD. Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur species. Systematic Biology. 52: 705-16. PMID 14530137 DOI: 10.1080/10635150390235557  0.387
2003 Eriksson T, Hibbs MS, Yoder AD, Delwiche CF, Donoghue MJ. The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA International Journal of Plant Sciences. 164: 197-211. DOI: 10.1086/346163  0.363
2000 Yoder AD, Rasoloarison RM, Goodman SM, Irwin JA, Atsalis S, Ravosa MJ, Ganzhorn JU. Remarkable species diversity in Malagasy mouse lemurs (primates, Microcebus). Proceedings of the National Academy of Sciences of the United States of America. 97: 11325-30. PMID 11005834 DOI: 10.1073/Pnas.200121897  0.5
2000 Yoder AD, Yang Z. Estimation of primate speciation dates using local molecular clocks. Molecular Biology and Evolution. 17: 1081-90. PMID 10889221 DOI: 10.1093/Oxfordjournals.Molbev.A026389  0.362
1999 Yoder AD, Irwin JA. Phylogeny of the Lemuridae: Effects of Character and Taxon Sampling on Resolution of Species Relationships within Eulemur. Cladistics : the International Journal of the Willi Hennig Society. 15: 351-361. PMID 34902953 DOI: 10.1111/j.1096-0031.1999.tb00271.x  0.407
1999 Yang Z, Yoder AD. Estimation of the transition/transversion rate bias and species sampling. Journal of Molecular Evolution. 48: 274-83. PMID 10093216 DOI: 10.1007/Pl00006470  0.387
1999 Yoder AD, Irwin JA. Phylogeny of the Lemuridae: Effects of character and taxon sampling on resolution of species relationships within Eulemur Cladistics. 15: 351-361. DOI: 10.1006/clad.1999.0105  0.407
1996 Yoder AD, Cartmill M, Ruvolo M, Smith K, Vilgalys R. Ancient single origin for Malagasy primates. Proceedings of the National Academy of Sciences of the United States of America. 93: 5122-6. PMID 8643538 DOI: 10.1073/Pnas.93.10.5122  0.377
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