| Year |
Citation |
Score |
| 2024 |
Antonio ML, Weiß CL, Gao Z, Sawyer S, Oberreiter V, Moots HM, Spence JP, Cheronet O, Zagorc B, Praxmarer E, Özdoğan KT, Demetz L, Gelabert P, Fernandes D, Lucci M, ... ... Pritchard JK, et al. Stable population structure in Europe since the Iron Age, despite high mobility. Elife. 13. PMID 38288729 DOI: 10.7554/eLife.79714 |
0.764 |
|
| 2023 |
Mostafavi H, Spence JP, Naqvi S, Pritchard JK. Systematic differences in discovery of genetic effects on gene expression and complex traits. Nature Genetics. 55: 1866-1875. PMID 37857933 DOI: 10.1038/s41588-023-01529-1 |
0.358 |
|
| 2023 |
Moots HM, Antonio M, Sawyer S, Spence JP, Oberreiter V, Weiß CL, Lucci M, Cherifi YMS, La Pastina F, Genchi F, Praxmeier E, Zagorc B, Cheronet O, Özdoğan KT, Demetz L, ... ... Pritchard JK, et al. A genetic history of continuity and mobility in the Iron Age central Mediterranean. Nature Ecology & Evolution. PMID 37592021 DOI: 10.1038/s41559-023-02143-4 |
0.739 |
|
| 2023 |
Mooney JA, Agranat-Tamir L, Pritchard JK, Rosenberg NA. On the number of genealogical ancestors tracing to the source groups of an admixed population. Genetics. 224. PMID 37410594 DOI: 10.1093/genetics/iyad079 |
0.56 |
|
| 2022 |
Patel RA, Musharoff SA, Spence JP, Pimentel H, Tcheandjieu C, Mostafavi H, Sinnott-Armstrong N, Clarke SL, Smith CJ, Durda PP, Taylor KD, Tracy R, Liu Y, Johnson WC, Aguet F, ... ... Pritchard JK, et al. Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits. American Journal of Human Genetics. PMID 35716666 DOI: 10.1016/j.ajhg.2022.05.014 |
0.315 |
|
| 2021 |
Võsa U, Claringbould A, Westra HJ, Bonder MJ, Deelen P, Zeng B, Kirsten H, Saha A, Kreuzhuber R, Yazar S, Brugge H, Oelen R, de Vries DH, van der Wijst MGP, Kasela S, ... ... Pritchard JK, et al. Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. Nature Genetics. PMID 34475573 DOI: 10.1038/s41588-021-00913-z |
0.308 |
|
| 2021 |
Sinnott-Armstrong N, Naqvi S, Rivas M, Pritchard JK. GWAS of three molecular traits highlights core genes and pathways alongside a highly polygenic background. Elife. 10. PMID 33587031 DOI: 10.7554/eLife.58615 |
0.34 |
|
| 2020 |
Mostafavi H, Harpak A, Agarwal I, Conley D, Pritchard JK, Przeworski M. Variable prediction accuracy of polygenic scores within an ancestry group. Elife. 9. PMID 31999256 DOI: 10.7554/Elife.48376 |
0.652 |
|
| 2020 |
Trevino AE, Sinnott-Armstrong N, Andersen J, Yoon SJ, Huber N, Pritchard JK, Chang HY, Greenleaf WJ, Pașca SP. Chromatin accessibility dynamics in a model of human forebrain development. Science (New York, N.Y.). 367. PMID 31974223 DOI: 10.1126/Science.Aay1645 |
0.371 |
|
| 2020 |
Catania S, Dumesic PA, Pimentel H, Nasif A, Stoddard CI, Burke JE, Diedrich JK, Cook S, Shea T, Geinger E, Lintner R, Yates JR, Hajkova P, Narlikar GJ, Cuomo CA, ... Pritchard JK, et al. Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase. Cell. PMID 31955845 DOI: 10.1016/J.Cell.2019.12.012 |
0.317 |
|
| 2019 |
Antonio ML, Gao Z, Moots HM, Lucci M, Candilio F, Sawyer S, Oberreiter V, Calderon D, Devitofranceschi K, Aikens RC, Aneli S, Bartoli F, Bedini A, Cheronet O, Cotter DJ, ... ... Pritchard JK, et al. Ancient Rome: A genetic crossroads of Europe and the Mediterranean. Science (New York, N.Y.). 366: 708-714. PMID 31699931 DOI: 10.1126/science.aay6826 |
0.784 |
|
| 2019 |
Calderon D, Nguyen MLT, Mezger A, Kathiria A, Müller F, Nguyen V, Lescano N, Wu B, Trombetta J, Ribado JV, Knowles DA, Gao Z, Blaeschke F, Parent AV, Burt TD, ... ... Pritchard JK, et al. Landscape of stimulation-responsive chromatin across diverse human immune cells. Nature Genetics. PMID 31570894 DOI: 10.1038/S41588-019-0505-9 |
0.752 |
|
| 2019 |
Liu X, Li YI, Pritchard JK. Trans Effects on Gene Expression Can Drive Omnigenic Inheritance. Cell. 177: 1022-1034.e6. PMID 31051098 DOI: 10.1016/j.cell.2019.04.014 |
0.432 |
|
| 2019 |
Berg JJ, Harpak A, Sinnott-Armstrong N, Joergensen AM, Mostafavi H, Field Y, Boyle EA, Zhang X, Racimo F, Pritchard JK, Coop G. Reduced signal for polygenic adaptation of height in UK Biobank. Elife. 8. PMID 30895923 DOI: 10.7554/Elife.39725 |
0.743 |
|
| 2019 |
Rosenberg NA, Edge MD, Pritchard JK, Feldman MW. Interpreting polygenic scores, polygenic adaptation, and human phenotypic differences. Evolution, Medicine, and Public Health. 2019: 26-34. PMID 30838127 DOI: 10.1093/Emph/Eoy036 |
0.702 |
|
| 2019 |
Mostafavi H, Harpak A, Agarwal I, Conley D, Pritchard JK, Przeworski M. Author response: Variable prediction accuracy of polygenic scores within an ancestry group Elife. DOI: 10.7554/Elife.48376.Sa2 |
0.562 |
|
| 2019 |
Pritchard J, Wray N. The Omnigenic Architecture Of Human Complex Traits European Neuropsychopharmacology. 29: 1065-1065. DOI: 10.1016/J.Euroneuro.2018.07.093 |
0.302 |
|
| 2019 |
Duncan L, Shen H, Pritchard J, Feldman M, Ressler K, Harris K, Domingue B. PERFORMANCE OF POLYGENIC SCORES ACROSS ANCESTRALLY DIVERSE POPULATIONS: SCIENTIFIC AND ETHICAL CONSIDERATIONS European Neuropsychopharmacology. 29: S833-S834. DOI: 10.1016/J.Euroneuro.2017.08.094 |
0.595 |
|
| 2018 |
Boyle EA, Pritchard JK, Greenleaf WJ. High-resolution mapping of cancer cell networks using co-functional interactions. Molecular Systems Biology. 14: e8594. PMID 30573688 DOI: 10.15252/Msb.20188594 |
0.391 |
|
| 2018 |
Glassberg EC, Gao Z, Harpak A, Lan X, Pritchard JK. Evidence for Weak Selective Constraint on Human Gene Expression. Genetics. PMID 30554168 DOI: 10.1534/Genetics.118.301833 |
0.785 |
|
| 2018 |
Sharon E, Chen SA, Khosla NM, Smith JD, Pritchard JK, Fraser HB. Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing. Cell. PMID 30245013 DOI: 10.1016/J.Cell.2018.08.057 |
0.464 |
|
| 2018 |
Wang SH, Hsiao CJ, Khan Z, Pritchard JK. Post-translational buffering leads to convergent protein expression levels between primates. Genome Biology. 19: 83. PMID 29950183 DOI: 10.1186/s13059-018-1451-z |
0.354 |
|
| 2018 |
Knowles DA, Burrows CK, Blischak JD, Patterson KM, Serie DJ, Norton N, Ober C, Pritchard JK, Gilad Y. Determining the genetic basis of anthracycline-cardiotoxicity by response QTL mapping in induced cardiomyocytes. Elife. 7. PMID 29737278 DOI: 10.7554/Elife.33480 |
0.378 |
|
| 2018 |
Sparvoli D, Richardson E, Osakada H, Lan X, Iwamoto M, Bowman GR, Kontur C, Bourland WA, Lynn DH, Pritchard JK, Haraguchi T, Dacks JB, Turkewitz AP. Remodeling the Specificity of an Endosomal CORVET Tether Underlies Formation of Regulated Secretory Vesicles in the Ciliate Tetrahymena thermophila. Current Biology : Cb. PMID 29478853 DOI: 10.1016/J.Cub.2018.01.047 |
0.303 |
|
| 2018 |
Berg JJ, Harpak A, Sinnott-Armstrong N, Joergensen AM, Mostafavi H, Field Y, Boyle EA, Zhang X, Racimo F, Pritchard JK, Coop G. Author response: Reduced signal for polygenic adaptation of height in UK Biobank Elife. DOI: 10.7554/Elife.39725.051 |
0.676 |
|
| 2018 |
Knowles DA, Burrows CK, Blischak JD, Patterson KM, Serie DJ, Norton N, Ober C, Pritchard JK, Gilad Y. Author response: Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes Elife. DOI: 10.7554/Elife.33480.050 |
0.304 |
|
| 2017 |
Li YI, Knowles DA, Humphrey J, Barbeira AN, Dickinson SP, Im HK, Pritchard JK. Annotation-free quantification of RNA splicing using LeafCutter. Nature Genetics. PMID 29229983 DOI: 10.1038/S41588-017-0004-9 |
0.383 |
|
| 2017 |
Banovich NE, Li YI, Raj A, Ward MC, Greenside P, Calderon D, Tung PY, Burnett JE, Myrthil M, Thomas SM, Burrows CK, Romero IG, Pavlovic BJ, Kundaje A, Pritchard JK, et al. Impact of regulatory variation across human iPSCs and differentiated cells. Genome Research. PMID 29208628 DOI: 10.1101/Gr.224436.117 |
0.371 |
|
| 2017 |
Harpak A, Lan X, Gao Z, Pritchard JK. Frequent nonallelic gene conversion on the human lineage and its effect on the divergence of gene duplicates. Proceedings of the National Academy of Sciences of the United States of America. PMID 29138319 DOI: 10.1073/Pnas.1708151114 |
0.775 |
|
| 2017 |
Calderon D, Bhaskar A, Knowles DA, Golan D, Raj T, Fu AQ, Pritchard JK. Inferring Relevant Cell Types for Complex Traits by Using Single-Cell Gene Expression. American Journal of Human Genetics. PMID 29106824 DOI: 10.1016/J.Ajhg.2017.09.009 |
0.401 |
|
| 2017 |
Boyle EA, Li YI, Pritchard JK. An Expanded View of Complex Traits: From Polygenic to Omnigenic. Cell. 169: 1177-1186. PMID 28622505 DOI: 10.1016/j.cell.2017.05.038 |
0.371 |
|
| 2017 |
Harris K, Pritchard JK. Rapid evolution of the human mutation spectrum. Elife. 6. PMID 28440220 DOI: 10.7554/eLife.24284 |
0.314 |
|
| 2017 |
Nielsen R, Akey JM, Jakobsson M, Pritchard JK, Tishkoff S, Willerslev E. Tracing the peopling of the world through genomics. Nature. 541: 302-310. PMID 28102248 DOI: 10.1038/Nature21347 |
0.44 |
|
| 2017 |
Tung PY, Blischak JD, Hsiao CJ, Knowles DA, Burnett JE, Pritchard JK, Gilad Y. Batch effects and the effective design of single-cell gene expression studies. Scientific Reports. 7: 39921. PMID 28045081 DOI: 10.1038/Srep39921 |
0.394 |
|
| 2016 |
Harpak A, Bhaskar A, Pritchard JK. Mutation Rate Variation is a Primary Determinant of the Distribution of Allele Frequencies in Humans. Plos Genetics. 12: e1006489. PMID 27977673 DOI: 10.1371/Journal.Pgen.1006489 |
0.34 |
|
| 2016 |
Telis N, Lehmann BV, Feldman MW, Pritchard JK. A Bibliometric History of the Journal GENETICS. Genetics. 204: 1337-1342. PMID 27927899 DOI: 10.1534/Genetics.116.196964 |
0.512 |
|
| 2016 |
Field Y, Boyle EA, Telis N, Gao Z, Gaulton KJ, Golan D, Yengo L, Rocheleau G, Froguel P, McCarthy MI, Pritchard JK. Detection of human adaptation during the past 2000 years. Science (New York, N.Y.). PMID 27738015 DOI: 10.1126/Science.Aag0776 |
0.792 |
|
| 2016 |
Corces MR, Buenrostro JD, Wu B, Greenside PG, Chan SM, Koenig JL, Snyder MP, Pritchard JK, Kundaje A, Greenleaf WJ, Majeti R, Chang HY. Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution. Nature Genetics. PMID 27526324 DOI: 10.1038/Ng.3646 |
0.355 |
|
| 2016 |
Sharon E, Sibener LV, Battle A, Fraser HB, Garcia KC, Pritchard JK. Genetic variation in MHC proteins is associated with T cell receptor expression biases. Nature Genetics. PMID 27479906 DOI: 10.1038/Ng.3625 |
0.374 |
|
| 2016 |
Parker CC, Gopalakrishnan S, Carbonetto P, Gonzales NM, Leung E, Park YJ, Aryee E, Davis J, Blizard DA, Ackert-Bicknell CL, Lionikas A, Pritchard JK, Palmer AA. Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice. Nature Genetics. PMID 27376237 DOI: 10.1038/Ng.3609 |
0.409 |
|
| 2016 |
Kontur C, Kumar S, Lan X, Pritchard JK, Turkewitz AP. Whole Genome Sequencing Identifies a Novel Factor Required for Secretory Granule Maturation in Tetrahymena thermophila. G3 (Bethesda, Md.). PMID 27317773 DOI: 10.1534/G3.116.028878 |
0.403 |
|
| 2016 |
Raj A, Wang SH, Shim H, Harpak A, Li YI, Engelmann B, Stephens M, Gilad Y, Pritchard JK. Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling. Elife. 5. PMID 27232982 DOI: 10.7554/Elife.13328 |
0.339 |
|
| 2016 |
Lan X, Pritchard JK. Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals. Science (New York, N.Y.). 352: 1009-13. PMID 27199432 DOI: 10.1126/Science.Aad8411 |
0.394 |
|
| 2016 |
Li YI, van de Geijn B, Raj A, Knowles DA, Petti AA, Golan D, Gilad Y, Pritchard JK. RNA splicing is a primary link between genetic variation and disease. Science (New York, N.Y.). 352: 600-4. PMID 27126046 DOI: 10.1126/Science.Aad9417 |
0.453 |
|
| 2016 |
Burrows CK, Banovich NE, Pavlovic BJ, Patterson K, Gallego Romero I, Pritchard JK, Gilad Y. Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs. Plos Genetics. 12: e1005793. PMID 26812582 DOI: 10.1371/journal.pgen.1005793 |
0.427 |
|
| 2015 |
Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y. Abundant contribution of short tandem repeats to gene expression variation in humans. Nature Genetics. PMID 26642241 DOI: 10.1038/Ng.3461 |
0.515 |
|
| 2015 |
Raj A, Shim H, Gilad Y, Pritchard JK, Stephens M. msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding. Plos One. 10: e0138030. PMID 26406244 DOI: 10.1371/Journal.Pone.0138030 |
0.321 |
|
| 2015 |
van de Geijn B, McVicker G, Gilad Y, Pritchard JK. WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nature Methods. 12: 1061-3. PMID 26366987 DOI: 10.1038/Nmeth.3582 |
0.372 |
|
| 2015 |
Grubert F, Zaugg JB, Kasowski M, Ursu O, Spacek DV, Martin AR, Greenside P, Srivas R, Phanstiel DH, Pekowska A, Heidari N, Euskirchen G, Huber W, Pritchard JK, Bustamante CD, et al. Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions. Cell. PMID 26300125 DOI: 10.1016/J.Cell.2015.07.048 |
0.446 |
|
| 2015 |
Thomas SM, Kagan C, Pavlovic BJ, Burnett J, Patterson K, Pritchard JK, Gilad Y. Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature. Plos Genetics. 11: e1005216. PMID 25950834 DOI: 10.1371/journal.pgen.1005216 |
0.428 |
|
| 2015 |
Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y. Genomic variation. Impact of regulatory variation from RNA to protein. Science (New York, N.Y.). 347: 664-7. PMID 25657249 DOI: 10.1126/Science.1260793 |
0.365 |
|
| 2015 |
Pai AA, Pritchard JK, Gilad Y. The genetic and mechanistic basis for variation in gene regulation. Plos Genetics. 11: e1004857. PMID 25569255 DOI: 10.1371/Journal.Pgen.1004857 |
0.444 |
|
| 2014 |
Zhou X, Cain CE, Myrthil M, Lewellen N, Michelini K, Davenport ER, Stephens M, Pritchard JK, Gilad Y. Epigenetic modifications are associated with inter-species gene expression variation in primates. Genome Biology. 15: 547. PMID 25468404 DOI: 10.1186/S13059-014-0547-3 |
0.369 |
|
| 2014 |
Banovich NE, Lan X, McVicker G, van de Geijn B, Degner JF, Blischak JD, Roux J, Pritchard JK, Gilad Y. Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels. Plos Genetics. 10: e1004663. PMID 25233095 DOI: 10.1371/Journal.Pgen.1004663 |
0.766 |
|
| 2014 |
Çal??kan M, Pritchard JK, Ober C, Gilad Y. The effect of freeze-thaw cycles on gene expression levels in lymphoblastoid cell lines. Plos One. 9: e107166. PMID 25192014 DOI: 10.1371/Journal.Pone.0107166 |
0.4 |
|
| 2014 |
Raj A, Stephens M, Pritchard JK. fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics. 197: 573-89. PMID 24700103 DOI: 10.1534/Genetics.114.164350 |
0.403 |
|
| 2014 |
Cusanovich DA, Pavlovic B, Pritchard JK, Gilad Y. The functional consequences of variation in transcription factor binding. Plos Genetics. 10: e1004226. PMID 24603674 DOI: 10.1371/Journal.Pgen.1004226 |
0.358 |
|
| 2014 |
Jeong C, Alkorta-Aranburu G, Basnyat B, Neupane M, Witonsky DB, Pritchard JK, Beall CM, Di Rienzo A. Admixture facilitates genetic adaptations to high altitude in Tibet. Nature Communications. 5: 3281. PMID 24513612 DOI: 10.1038/Ncomms4281 |
0.472 |
|
| 2014 |
Simons YB, Turchin MC, Pritchard JK, Sella G. The deleterious mutation load is insensitive to recent population history. Nature Genetics. 46: 220-4. PMID 24509481 DOI: 10.1038/Ng.2896 |
0.363 |
|
| 2014 |
Nalabothula N, McVicker G, Maiorano J, Martin R, Pritchard JK, Fondufe-Mittendorf YN. The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation. Bmc Genomics. 15: 92. PMID 24484546 DOI: 10.1186/1471-2164-15-92 |
0.304 |
|
| 2014 |
Birney E, Pritchard JK. Archaic humans: Four makes a party. Nature. 505: 32-4. PMID 24352230 DOI: 10.1038/Nature12847 |
0.387 |
|
| 2014 |
Roux J, Hernando-Herraez I, Banovich N, Perez RG, Chavarria C, Mitrano A, Pritchard J, Marques-Bonet T, Gilad Y. A genomic study of the contribution of DNA methylation to regulatory evolution in primates F1000research. 5. DOI: 10.7490/F1000Research.1096813.1 |
0.33 |
|
| 2013 |
McVicker G, van de Geijn B, Degner JF, Cain CE, Banovich NE, Raj A, Lewellen N, Myrthil M, Gilad Y, Pritchard JK. Identification of genetic variants that affect histone modifications in human cells. Science (New York, N.Y.). 342: 747-9. PMID 24136359 DOI: 10.1126/Science.1242429 |
0.751 |
|
| 2013 |
Khan Z, Ford MJ, Cusanovich DA, Mitrano A, Pritchard JK, Gilad Y. Primate transcript and protein expression levels evolve under compensatory selection pressures. Science (New York, N.Y.). 342: 1100-4. PMID 24136357 DOI: 10.1126/Science.1242379 |
0.314 |
|
| 2013 |
Lonsdale J, Thomas J, Salvatore M, Phillips R, Lo E, Shad S, Hasz R, Walters G, Garcia F, Young N, Foster B, Moser M, Karasik E, Gillard B, Ramsey K, ... ... Pritchard J, et al. The Genotype-Tissue Expression (GTEx) project Nature Genetics. 45: 580-585. PMID 23715323 DOI: 10.1038/Ng.2653 |
0.398 |
|
| 2012 |
Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK, Di Rienzo A. The genetic architecture of adaptations to high altitude in Ethiopia. Plos Genetics. 8: e1003110. PMID 23236293 DOI: 10.1371/Journal.Pgen.1003110 |
0.494 |
|
| 2012 |
Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK. Controls of nucleosome positioning in the human genome. Plos Genetics. 8: e1003036. PMID 23166509 DOI: 10.1371/Journal.Pgen.1003036 |
0.386 |
|
| 2012 |
Pickrell JK, Pritchard JK. Inference of population splits and mixtures from genome-wide allele frequency data. Plos Genetics. 8: e1002967. PMID 23166502 DOI: 10.1371/journal.pgen.1002967 |
0.444 |
|
| 2012 |
Pai AA, Cain CE, Mizrahi-Man O, De Leon S, Lewellen N, Veyrieras JB, Degner JF, Gaffney DJ, Pickrell JK, Stephens M, Pritchard JK, Gilad Y. The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels. Plos Genetics. 8: e1003000. PMID 23071454 DOI: 10.1371/Journal.Pgen.1003000 |
0.755 |
|
| 2012 |
Zullo JM, Demarco IA, Piqué-Regi R, Gaffney DJ, Epstein CB, Spooner CJ, Luperchio TR, Bernstein BE, Pritchard JK, Reddy KL, Singh H. DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina. Cell. 149: 1474-87. PMID 22726435 DOI: 10.1016/J.Cell.2012.04.035 |
0.643 |
|
| 2012 |
Pickrell JK, Gilad Y, Pritchard JK. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science (New York, N.Y.). 335: 1302; author reply 1. PMID 22422963 DOI: 10.1126/science.1210484 |
0.361 |
|
| 2012 |
Veyrieras JB, Gaffney DJ, Pickrell JK, Gilad Y, Stephens M, Pritchard JK. Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data. Plos One. 7: e30629. PMID 22359548 DOI: 10.1371/Journal.Pone.0030629 |
0.439 |
|
| 2012 |
MacArthur DG, Balasubramanian S, Frankish A, Huang N, Morris J, Walter K, Jostins L, Habegger L, Pickrell JK, Montgomery SB, Albers CA, Zhang ZD, Conrad DF, Lunter G, Zheng H, ... ... Pritchard JK, et al. A systematic survey of loss-of-function variants in human protein-coding genes. Science (New York, N.Y.). 335: 823-8. PMID 22344438 DOI: 10.1126/Science.1215040 |
0.689 |
|
| 2012 |
Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK. DNase I sensitivity QTLs are a major determinant of human expression variation. Nature. 482: 390-4. PMID 22307276 DOI: 10.1038/Nature10808 |
0.835 |
|
| 2012 |
Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Dissecting the regulatory architecture of gene expression QTLs. Genome Biology. 13: R7. PMID 22293038 DOI: 10.1186/Gb-2012-13-1-R7 |
0.816 |
|
| 2012 |
Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y. Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Genome Research. 22: 602-10. PMID 22207615 DOI: 10.1101/Gr.130468.111 |
0.447 |
|
| 2012 |
Perry GH, Reeves D, Melsted P, Ratan A, Miller W, Michelini K, Louis EE, Pritchard JK, Mason CE, Gilad Y. A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biology and Evolution. 4: 126-35. PMID 22155688 DOI: 10.1093/Gbe/Evr132 |
0.43 |
|
| 2011 |
Huang L, Jakobsson M, Pemberton TJ, Ibrahim M, Nyambo T, Omar S, Pritchard JK, Tishkoff SA, Rosenberg NA. Haplotype variation and genotype imputation in African populations. Genetic Epidemiology. 35: 766-80. PMID 22125220 DOI: 10.1002/Gepi.20626 |
0.649 |
|
| 2011 |
Pritchard JK. Whole-genome sequencing data offer insights into human demography. Nature Genetics. 43: 923-5. PMID 21956387 DOI: 10.1038/ng.953 |
0.446 |
|
| 2011 |
Pickrell JK, Gaffney DJ, Gilad Y, Pritchard JK. False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions. Bioinformatics (Oxford, England). 27: 2144-6. PMID 21690102 DOI: 10.1093/bioinformatics/btr354 |
0.368 |
|
| 2011 |
Hancock AM, Witonsky DB, Alkorta-Aranburu G, Beall CM, Gebremedhin A, Sukernik R, Utermann G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate-mediated selective pressures in humans. Plos Genetics. 7: e1001375. PMID 21533023 DOI: 10.1371/Journal.Pgen.1001375 |
0.701 |
|
| 2011 |
Pai AA, Bell JT, Marioni JC, Pritchard JK, Gilad Y. A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues. Plos Genetics. 7: e1001316. PMID 21383968 DOI: 10.1371/Journal.Pgen.1001316 |
0.362 |
|
| 2011 |
Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK. DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biology. 12: R10. PMID 21251332 DOI: 10.1186/Gb-2011-12-1-R10 |
0.798 |
|
| 2011 |
Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Research. 21: 447-55. PMID 21106904 DOI: 10.1101/Gr.112623.110 |
0.8 |
|
| 2011 |
Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK. Correction: DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines Genome Biology. 12. DOI: 10.1186/Gb-2011-12-6-405 |
0.795 |
|
| 2010 |
Pickrell JK, Pai AA, Gilad Y, Pritchard JK. Noisy splicing drives mRNA isoform diversity in human cells. Plos Genetics. 6: e1001236. PMID 21151575 DOI: 10.1371/Journal.Pgen.1001236 |
0.379 |
|
| 2010 |
Pritchard JK. How we are evolving. Scientific American. 303: 40-7. PMID 20923127 DOI: 10.1038/scientificamerican1010-40 |
0.432 |
|
| 2010 |
Pritchard JK, Di Rienzo A. Adaptation - not by sweeps alone. Nature Reviews. Genetics. 11: 665-7. PMID 20838407 DOI: 10.1038/nrg2880 |
0.349 |
|
| 2010 |
Coop G, Witonsky D, Di Rienzo A, Pritchard JK. Using environmental correlations to identify loci underlying local adaptation. Genetics. 185: 1411-23. PMID 20516501 DOI: 10.1534/Genetics.110.114819 |
0.669 |
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| 2010 |
Hancock AM, Witonsky DB, Ehler E, Alkorta-Aranburu G, Beall C, Gebremedhin A, Sukernik R, Utermann G, Pritchard J, Coop G, Di Rienzo A. Colloquium paper: human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency. Proceedings of the National Academy of Sciences of the United States of America. 107: 8924-30. PMID 20445095 DOI: 10.1073/Pnas.0914625107 |
0.7 |
|
| 2010 |
Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. 464: 768-72. PMID 20220758 DOI: 10.1038/Nature08872 |
0.779 |
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| 2010 |
Pritchard JK, Pickrell JK, Coop G. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Current Biology : Cb. 20: R208-15. PMID 20178769 DOI: 10.1016/J.Cub.2009.11.055 |
0.724 |
|
| 2009 |
Hubisz MJ, Falush D, Stephens M, Pritchard JK. Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources. 9: 1322-32. PMID 21564903 DOI: 10.1111/J.1755-0998.2009.02591.X |
0.348 |
|
| 2009 |
Degner JF, Marioni JC, Pai AA, Pickrell JK, Nkadori E, Gilad Y, Pritchard JK. Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Bioinformatics (Oxford, England). 25: 3207-12. PMID 19808877 DOI: 10.1093/Bioinformatics/Btp579 |
0.759 |
|
| 2009 |
Gilad Y, Pritchard JK, Thornton K. Characterizing natural variation using next-generation sequencing technologies. Trends in Genetics : Tig. 25: 463-71. PMID 19801172 DOI: 10.1016/j.tig.2009.09.003 |
0.405 |
|
| 2009 |
Coop G, Pickrell JK, Novembre J, Kudaravalli S, Li J, Absher D, Myers RM, Cavalli-Sforza LL, Feldman MW, Pritchard JK. The role of geography in human adaptation. Plos Genetics. 5: e1000500. PMID 19503611 DOI: 10.1371/Journal.Pgen.1000500 |
0.825 |
|
| 2009 |
Davison D, Pritchard JK, Coop G. An approximate likelihood for genetic data under a model with recombination and population splitting. Theoretical Population Biology. 75: 331-45. PMID 19362099 DOI: 10.1016/J.Tpb.2009.04.001 |
0.77 |
|
| 2009 |
Pickrell JK, Coop G, Novembre J, Kudaravalli S, Li JZ, Absher D, Srinivasan BS, Barsh GS, Myers RM, Feldman MW, Pritchard JK. Signals of recent positive selection in a worldwide sample of human populations. Genome Research. 19: 826-37. PMID 19307593 DOI: 10.1101/Gr.087577.108 |
0.815 |
|
| 2009 |
Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA. Haplotypic background of a private allele at high frequency in the Americas. Molecular Biology and Evolution. 26: 995-1016. PMID 19221006 DOI: 10.1093/Molbev/Msp024 |
0.741 |
|
| 2009 |
Kudaravalli S, Veyrieras JB, Stranger BE, Dermitzakis ET, Pritchard JK. Gene expression levels are a target of recent natural selection in the human genome. Molecular Biology and Evolution. 26: 649-58. PMID 19091723 DOI: 10.1093/Molbev/Msn289 |
0.818 |
|
| 2008 |
Veyrieras JB, Kudaravalli S, Kim SY, Dermitzakis ET, Gilad Y, Stephens M, Pritchard JK. High-resolution mapping of expression-QTLs yields insight into human gene regulation. Plos Genetics. 4: e1000214. PMID 18846210 DOI: 10.1371/Journal.Pgen.1000214 |
0.798 |
|
| 2008 |
Gilad Y, Rifkin SA, Pritchard JK. Revealing the architecture of gene regulation: the promise of eQTL studies. Trends in Genetics : Tig. 24: 408-15. PMID 18597885 DOI: 10.1016/J.Tig.2008.06.001 |
0.477 |
|
| 2008 |
Pemberton TJ, Jakobsson M, Conrad DF, Coop G, Wall JD, Pritchard JK, Patel PI, Rosenberg NA. Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India. Annals of Human Genetics. 72: 535-46. PMID 18513279 DOI: 10.1111/J.1469-1809.2008.00457.X |
0.821 |
|
| 2008 |
Hancock AM, Witonsky DB, Gordon AS, Eshel G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate in candidate genes for common metabolic disorders. Plos Genetics. 4: e32. PMID 18282109 DOI: 10.1371/Journal.Pgen.0040032 |
0.687 |
|
| 2008 |
Coop G, Wen X, Ober C, Pritchard JK, Przeworski M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science (New York, N.Y.). 319: 1395-8. PMID 18239090 DOI: 10.1126/Science.1151851 |
0.764 |
|
| 2007 |
Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes. 7: 574-578. PMID 18784791 DOI: 10.1111/J.1471-8286.2007.01758.X |
0.398 |
|
| 2007 |
Novembre J, Pritchard JK, Coop G. Adaptive drool in the gene pool. Nature Genetics. 39: 1188-90. PMID 17898775 DOI: 10.1038/Ng1007-1188 |
0.687 |
|
| 2007 |
Kim SY, Pritchard JK. Adaptive evolution of conserved noncoding elements in mammals. Plos Genetics. 3: 1572-86. PMID 17845075 DOI: 10.1371/journal.pgen.0030147 |
0.377 |
|
| 2007 |
Eichler EE, Nickerson DA, Altshuler D, Bowcock AM, Brooks LD, Carter NP, Church DM, Felsenfeld A, Guyer M, Lee C, Lupski JR, Mullikin JC, Pritchard JK, Sebat J, et al. Completing the map of human genetic variation. Nature. 447: 161-5. PMID 17495918 DOI: 10.1038/447161A |
0.485 |
|
| 2007 |
Zollner S, Pritchard JK. Overcoming the winner's curse: estimating penetrance parameters from case-control data. American Journal of Human Genetics. 80: 605-15. PMID 17357068 DOI: 10.1086/512821 |
0.326 |
|
| 2007 |
Tishkoff SA, Reed FA, Ranciaro A, Voight BF, Babbitt CC, Silverman JS, Powell K, Mortensen HM, Hirbo JB, Osman M, Ibrahim M, Omar SA, Lema G, Nyambo TB, Ghori J, ... ... Pritchard JK, et al. Convergent adaptation of human lactase persistence in Africa and Europe. Nature Genetics. 39: 31-40. PMID 17159977 DOI: 10.1038/Ng1946 |
0.759 |
|
| 2007 |
Conrad DF, Pritchard JK. Population genetics and disease Genes and Common Diseases. 44-58. DOI: 10.1017/CBO9780511543555.004 |
0.622 |
|
| 2006 |
Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM. Sequencing and analysis of Neanderthal genomic DNA. Science (New York, N.Y.). 314: 1113-8. PMID 17110569 DOI: 10.1126/Science.1131412 |
0.794 |
|
| 2006 |
Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics. 38: 1251-60. PMID 17057719 DOI: 10.1038/Ng1911 |
0.825 |
|
| 2006 |
Murgia C, Pritchard JK, Kim SY, Fassati A, Weiss RA. Clonal origin and evolution of a transmissible cancer. Cell. 126: 477-87. PMID 16901782 DOI: 10.1016/J.Cell.2006.05.051 |
0.344 |
|
| 2006 |
Voight BF, Kudaravalli S, Wen X, Pritchard JK. A map of recent positive selection in the human genome. Plos Biology. 4: e72. PMID 16494531 DOI: 10.1371/Journal.Pbio.0040072 |
0.81 |
|
| 2006 |
Hellenthal G, Pritchard JK, Stephens M. The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium. Genetics. 172: 2001-5. PMID 16387890 DOI: 10.1534/Genetics.104.039271 |
0.365 |
|
| 2006 |
Conrad DF, Andrews TD, Carter NP, Hurles ME, Pritchard JK. A high-resolution survey of deletion polymorphism in the human genome. Nature Genetics. 38: 75-81. PMID 16327808 DOI: 10.1038/Ng1697 |
0.712 |
|
| 2006 |
Voight BF, Kudaravalli S, Wen X, Pritchard JK. Correction: A Map of Recent Positive Selection in the Human Genome Plos Biology. 4: e154. DOI: 10.1371/Journal.Pbio.0040154 |
0.743 |
|
| 2005 |
Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW. Clines, clusters, and the effect of study design on the inference of human population structure. Plos Genetics. 1: e70. PMID 16355252 DOI: 10.1371/Journal.Pgen.0010070 |
0.715 |
|
| 2005 |
Voight BF, Pritchard JK. Confounding from cryptic relatedness in case-control association studies. Plos Genetics. 1: e32. PMID 16151517 DOI: 10.1371/Journal.Pgen.0010032 |
0.619 |
|
| 2005 |
Zöllner S, Wen X, Pritchard JK. Association mapping and fine mapping with TreeLD. Bioinformatics (Oxford, England). 21: 3168-70. PMID 15855250 DOI: 10.1093/Bioinformatics/Bti453 |
0.313 |
|
| 2005 |
Zöllner S, Pritchard JK. Coalescent-based association mapping and fine mapping of complex trait loci. Genetics. 169: 1071-92. PMID 15489534 DOI: 10.1534/Genetics.104.031799 |
0.37 |
|
| 2004 |
Montana G, Pritchard JK. Statistical tests for admixture mapping with case-control and cases-only data. American Journal of Human Genetics. 75: 771-89. PMID 15386213 DOI: 10.1086/425281 |
0.411 |
|
| 2004 |
Zöllner S, Wen X, Hanchard NA, Herbert MA, Ober C, Pritchard JK. Evidence for extensive transmission distortion in the human genome. American Journal of Human Genetics. 74: 62-72. PMID 14681832 DOI: 10.1086/381131 |
0.456 |
|
| 2003 |
Horton R, Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. Read all about it: The Lancet's Paper of the Year, 2003. Lancet. 362: 2101-3. PMID 14697815 |
0.528 |
|
| 2003 |
Rosenberg NA, Li LM, Ward R, Pritchard JK. Informativeness of genetic markers for inference of ancestry. American Journal of Human Genetics. 73: 1402-22. PMID 14631557 DOI: 10.1086/380416 |
0.583 |
|
| 2003 |
Wall JD, Pritchard JK. Assessing the performance of the haplotype block model of linkage disequilibrium. American Journal of Human Genetics. 73: 502-15. PMID 12916017 DOI: 10.1086/378099 |
0.373 |
|
| 2003 |
Wall JD, Pritchard JK. Haplotype blocks and linkage disequilibrium in the human genome. Nature Reviews. Genetics. 4: 587-97. PMID 12897771 DOI: 10.1038/nrg1123 |
0.412 |
|
| 2003 |
Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M, Blaser MJ, Graham DY, Vacher S, Perez-Perez GI, Yamaoka Y, Mégraud F, Otto K, Reichard U, Katzowitsch E, et al. Traces of human migrations in Helicobacter pylori populations. Science (New York, N.Y.). 299: 1582-5. PMID 12624269 DOI: 10.1126/Science.1080857 |
0.364 |
|
| 2002 |
Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. Genetic structure of human populations. Science (New York, N.Y.). 298: 2381-5. PMID 12493913 DOI: 10.1126/Science.1078311 |
0.698 |
|
| 2002 |
Pritchard JK, Cox NJ. The allelic architecture of human disease genes: common disease-common variant...or not? Human Molecular Genetics. 11: 2417-23. PMID 12351577 DOI: 10.1093/Hmg/11.20.2417 |
0.412 |
|
| 2001 |
Pritchard JK, Donnelly P. Case-control studies of association in structured or admixed populations. Theoretical Population Biology. 60: 227-37. PMID 11855957 DOI: 10.1006/Tpbi.2001.1543 |
0.383 |
|
| 2001 |
Pritchard JK. Deconstructing maize population structure. Nature Genetics. 28: 203-4. PMID 11431683 DOI: 10.1038/90026 |
0.358 |
|
| 2001 |
Pritchard JK, Przeworski M. Linkage disequilibrium in humans: models and data. American Journal of Human Genetics. 69: 1-14. PMID 11410837 DOI: 10.1086/321275 |
0.692 |
|
| 2001 |
Pritchard JK. Are rare variants responsible for susceptibility to complex diseases? American Journal of Human Genetics. 69: 124-37. PMID 11404818 DOI: 10.1086/321272 |
0.356 |
|
| 2001 |
Beaumont M, Barratt EM, Gottelli D, Kitchener AC, Daniels MJ, Pritchard JK, Bruford MW. Genetic diversity and introgression in the Scottish wildcat. Molecular Ecology. 10: 319-36. PMID 11298948 DOI: 10.1046/J.1365-294X.2001.01196.X |
0.403 |
|
| 2001 |
Rosenberg NA, Woolf E, Pritchard JK, Schaap T, Gefel D, Shpirer I, Lavi U, Bonne-Tamir B, Hillel J, Feldman MW. Distinctive genetic signatures in the Libyan Jews. Proceedings of the National Academy of Sciences of the United States of America. 98: 858-63. PMID 11158561 DOI: 10.1073/Pnas.98.3.858 |
0.691 |
|
| 2000 |
Thomson R, Pritchard JK, Shen P, Oefner PJ, Feldman MW. Recent common ancestry of human Y chromosomes: evidence from DNA sequence data. Proceedings of the National Academy of Sciences of the United States of America. 97: 7360-5. PMID 10861004 DOI: 10.1073/Pnas.97.13.7360 |
0.514 |
|
| 2000 |
Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 155: 945-59. PMID 10835412 |
0.309 |
|
| 2000 |
Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. Association mapping in structured populations. American Journal of Human Genetics. 67: 170-81. PMID 10827107 DOI: 10.1086/302959 |
0.618 |
|
| 2000 |
Allen RW, Traver M, Pritchard JK. DNA analysis in a paternity case involving a triploid fetus. Transfusion. 40: 240-4. PMID 10686009 DOI: 10.1046/j.1537-2995.2000.40020240.x |
0.322 |
|
| 1999 |
Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Molecular Biology and Evolution. 16: 1791-8. PMID 10605120 DOI: 10.1093/Oxfordjournals.Molbev.A026091 |
0.522 |
|
| 1999 |
Pritchard JK, Rosenberg NA. Use of unlinked genetic markers to detect population stratification in association studies. American Journal of Human Genetics. 65: 220-8. PMID 10364535 DOI: 10.1086/302449 |
0.621 |
|
| 1999 |
Robson AJ, Bergstrom CT, Pritchard JK. Risky business: sexual and asexual reproduction in variable environments. Journal of Theoretical Biology. 197: 541-56. PMID 10196096 DOI: 10.1006/Jtbi.1998.0894 |
0.631 |
|
| 1997 |
Pritchard JK, Schaeffer SW. Polymorphism and divergence at a Drosophila pseudogene locus. Genetics. 147: 199-208. PMID 9286680 |
0.642 |
|
| 1996 |
Pritchard JK, Feldman MW. Genetic data and the african origin of humans. Science (New York, N.Y.). 274: 1548a. PMID 17816997 DOI: 10.1126/Science.274.5292.1548 |
0.53 |
|
| 1996 |
Pritchard JK, Feldman MW. Statistics for microsatellite variation based on coalescence. Theoretical Population Biology. 50: 325-44. PMID 9000493 DOI: 10.1006/Tpbi.1996.0034 |
0.55 |
|
| 1996 |
Pritchard JK, Feldman MW. Genetic data and the African origin of humans. Science (New York, N.Y.). 274: 1548-9. PMID 8966621 DOI: 10.1126/science.274.5292.1548 |
0.465 |
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