Graham Coop - Publications

Affiliations: 
University of California, Davis, Davis, CA 
Area:
Population Genetics

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yair S, Lee KM, Coop G. The timing of human adaptation from Neanderthal introgression. Genetics. PMID 33787889 DOI: 10.1093/genetics/iyab052  0.96
2020 Calfee E, Agra MN, Palacio MA, Ramírez SR, Coop G. Selection and hybridization shaped the rapid spread of African honey bee ancestry in the Americas. Plos Genetics. 16: e1009038. PMID 33075065 DOI: 10.1371/journal.pgen.1009038  0.36
2020 Buffalo V, Coop G. Estimating the genome-wide contribution of selection to temporal allele frequency change. Proceedings of the National Academy of Sciences of the United States of America. 117: 20672-20680. PMID 32817464 DOI: 10.1073/Pnas.1919039117  1
2020 Osmond MM, Coop G. Genetic Signatures of Evolutionary Rescue by a Selective Sweep. Genetics. PMID 32398227 DOI: 10.1534/Genetics.120.303173  1
2019 Buffalo V, Coop G. The Linked Selection Signature of Rapid Adaptation in Temporal Genomic Data. Genetics. PMID 31558582 DOI: 10.1534/Genetics.119.302581  1
2019 Lee KM, Coop G. Population genomics perspectives on convergent adaptation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180236. PMID 31154979 DOI: 10.1098/Rstb.2018.0236  0.96
2019 Berg JJ, Harpak A, Sinnott-Armstrong N, Joergensen AM, Mostafavi H, Field Y, Boyle EA, Zhang X, Racimo F, Pritchard JK, Coop G. Reduced signal for polygenic adaptation of height in UK Biobank. Elife. 8. PMID 30895923 DOI: 10.7554/Elife.39725  1
2019 Josephs EB, Berg JJ, Ross-Ibarra J, Coop G. Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens. Genetics. PMID 30679259 DOI: 10.1534/Genetics.118.301786  1
2018 Chen N, Juric I, Cosgrove EJ, Bowman R, Fitzpatrick JW, Schoech SJ, Clark AG, Coop G. Allele frequency dynamics in a pedigreed natural population. Proceedings of the National Academy of Sciences of the United States of America. PMID 30598449 DOI: 10.1073/Pnas.1813852116  1
2018 Bradburd GS, Coop GM, Ralph PL. Inferring Continuous and Discrete Population Genetic Structure Across Space. Genetics. PMID 30026187 DOI: 10.1534/genetics.118.301333  1
2018 Smith J, Coop G, Stephens M, Novembre J. Estimating time to the common ancestor for a beneficial allele. Molecular Biology and Evolution. PMID 29361025 DOI: 10.1093/Molbev/Msy006  0.44
2017 Lee KM, Coop G. Distinguishing Among Modes of Convergent Adaptation Using Population Genomic Data. Genetics. PMID 29046403 DOI: 10.1534/Genetics.117.300417  0.96
2017 Aeschbacher S, Selby JP, Willis JH, Coop G. Population-genomic inference of the strength and timing of selection against gene flow. Proceedings of the National Academy of Sciences of the United States of America. PMID 28634295 DOI: 10.1073/Pnas.1616755114  1
2016 Juric I, Aeschbacher S, Coop G. The Strength of Selection against Neanderthal Introgression. Plos Genetics. 12: e1006340. PMID 27824859 DOI: 10.1371/Journal.Pgen.1006340  0.32
2016 Elyashiv E, Sattath S, Hu TT, Strutsovsky A, McVicker G, Andolfatto P, Coop G, Sella G. A Genomic Map of the Effects of Linked Selection in Drosophila. Plos Genetics. 12: e1006130. PMID 27536991 DOI: 10.1371/Journal.Pgen.1006130  1
2016 Buffalo V, Mount SM, Coop G. A Genealogical Look at Shared Ancestry on the X Chromosome. Genetics. PMID 27356612 DOI: 10.1534/Genetics.116.190041  1
2016 Bradburd GS, Ralph PL, Coop GM. A Spatial Framework for Understanding Population Structure and Admixture. Plos Genetics. 12: e1005703. PMID 26771578 DOI: 10.1371/journal.pgen.1005703  1
2015 Ralph PL, Coop G. The Role of Standing Variation in Geographic Convergent Adaptation. The American Naturalist. 186: S5-S23. PMID 26656217 DOI: 10.1086/682948  1
2015 Ralph PL, Coop G. Convergent Evolution During Local Adaptation to Patchy Landscapes. Plos Genetics. 11: e1005630. PMID 26571125 DOI: 10.1371/Journal.Pgen.1005630  1
2015 Berg JJ, Coop G. A Coalescent Model for a Sweep of a Unique Standing Variant. Genetics. PMID 26311475 DOI: 10.1534/Genetics.115.178962  1
2015 Sedghifar A, Brandvain Y, Ralph P, Coop G. The Spatial Mixing of Genomes in Secondary Contact Zones. Genetics. 201: 243-61. PMID 26205988 DOI: 10.1534/Genetics.115.179838  1
2015 Martin CH, Cutler JS, Friel JP, Dening Touokong C, Coop G, Wainwright PC. Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation. Evolution; International Journal of Organic Evolution. 69: 1406-22. PMID 25929355 DOI: 10.1111/Evo.12674  1
2015 Brandvain Y, Coop G. Sperm should evolve to make female meiosis fair. Evolution; International Journal of Organic Evolution. 69: 1004-14. PMID 25662355 DOI: 10.1111/Evo.12621  1
2014 Berg JJ, Coop G. A population genetic signal of polygenic adaptation. Plos Genetics. 10: e1004412. PMID 25102153 DOI: 10.1371/Journal.Pgen.1004412  1
2014 Brandvain Y, Kenney AM, Flagel L, Coop G, Sweigart AL. Speciation and introgression between Mimulus nasutus and Mimulus guttatus. Plos Genetics. 10: e1004410. PMID 24967630 DOI: 10.1371/Journal.Pgen.1004410  1
2013 Bradburd GS, Ralph PL, Coop GM. Disentangling the effects of geographic and ecological isolation on genetic differentiation. Evolution; International Journal of Organic Evolution. 67: 3258-73. PMID 24102455 DOI: 10.1111/evo.12193  1
2013 Brandvain Y, Slotte T, Hazzouri KM, Wright SI, Coop G. Genomic identification of founding haplotypes reveals the history of the selfing species Capsella rubella. Plos Genetics. 9: e1003754. PMID 24068948 DOI: 10.1371/Journal.Pgen.1003754  1
2013 Günther T, Coop G. Robust identification of local adaptation from allele frequencies. Genetics. 195: 205-20. PMID 23821598 DOI: 10.1534/Genetics.113.152462  1
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Coop G, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669  1
2013 Ralph P, Coop G. The geography of recent genetic ancestry across Europe. Plos Biology. 11: e1001555. PMID 23667324 DOI: 10.1371/Journal.Pbio.1001555  1
2012 Boettiger C, Coop G, Ralph P. Is your phylogeny informative? Measuring the power of comparative methods. Evolution; International Journal of Organic Evolution. 66: 2240-51. PMID 22759299 DOI: 10.1111/J.1558-5646.2011.01574.X  1
2012 Coop G, Ralph P. Patterns of neutral diversity under general models of selective sweeps. Genetics. 192: 205-24. PMID 22714413 DOI: 10.1534/Genetics.112.141861  1
2012 Brandvain Y, Coop G. Scrambling eggs: meiotic drive and the evolution of female recombination rates. Genetics. 190: 709-23. PMID 22143919 DOI: 10.1534/Genetics.111.136721  1
2011 Fledel-Alon A, Leffler EM, Guan Y, Stephens M, Coop G, Przeworski M. Variation in human recombination rates and its genetic determinants. Plos One. 6: e20321. PMID 21698098 DOI: 10.1371/Journal.Pone.0020321  1
2011 Hancock AM, Witonsky DB, Alkorta-Aranburu G, Beall CM, Gebremedhin A, Sukernik R, Utermann G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate-mediated selective pressures in humans. Plos Genetics. 7: e1001375. PMID 21533023 DOI: 10.1371/Journal.Pgen.1001375  1
2010 Eckert AJ, Bower AD, González-Martínez SC, Wegrzyn JL, Coop G, Neale DB. Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae). Molecular Ecology. 19: 3789-805. PMID 20723060 DOI: 10.1111/J.1365-294X.2010.04698.X  1
2010 Ralph P, Coop G. Parallel adaptation: one or many waves of advance of an advantageous allele? Genetics. 186: 647-68. PMID 20660645 DOI: 10.1534/Genetics.110.119594  1
2010 Coop G, Witonsky D, Di Rienzo A, Pritchard JK. Using environmental correlations to identify loci underlying local adaptation. Genetics. 185: 1411-23. PMID 20516501 DOI: 10.1534/Genetics.110.114819  1
2010 Hancock AM, Witonsky DB, Ehler E, Alkorta-Aranburu G, Beall C, Gebremedhin A, Sukernik R, Utermann G, Pritchard J, Coop G, Di Rienzo A. Colloquium paper: human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency. Proceedings of the National Academy of Sciences of the United States of America. 107: 8924-30. PMID 20445095 DOI: 10.1073/Pnas.0914625107  1
2010 Pritchard JK, Pickrell JK, Coop G. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Current Biology : Cb. 20: R208-15. PMID 20178769 DOI: 10.1016/J.Cub.2009.11.055  1
2010 Baudat F, Buard J, Grey C, Fledel-Alon A, Ober C, Przeworski M, Coop G, de Massy B. PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice. Science (New York, N.Y.). 327: 836-40. PMID 20044539 DOI: 10.1126/Science.1183439  1
2009 Fledel-Alon A, Wilson DJ, Broman K, Wen X, Ober C, Coop G, Przeworski M. Broad-scale recombination patterns underlying proper disjunction in humans. Plos Genetics. 5: e1000658. PMID 19763175 DOI: 10.1371/Journal.Pgen.1000658  1
2009 Bullaughey K, Chavarria CI, Coop G, Gilad Y. Expression quantitative trait loci detected in cell lines are often present in primary tissues. Human Molecular Genetics. 18: 4296-303. PMID 19671653 DOI: 10.1093/Hmg/Ddp382  1
2009 Coop G, Pickrell JK, Novembre J, Kudaravalli S, Li J, Absher D, Myers RM, Cavalli-Sforza LL, Feldman MW, Pritchard JK. The role of geography in human adaptation. Plos Genetics. 5: e1000500. PMID 19503611 DOI: 10.1371/Journal.Pgen.1000500  1
2009 Davison D, Pritchard JK, Coop G. An approximate likelihood for genetic data under a model with recombination and population splitting. Theoretical Population Biology. 75: 331-45. PMID 19362099 DOI: 10.1016/J.Tpb.2009.04.001  1
2009 Pickrell JK, Coop G, Novembre J, Kudaravalli S, Li JZ, Absher D, Srinivasan BS, Barsh GS, Myers RM, Feldman MW, Pritchard JK. Signals of recent positive selection in a worldwide sample of human populations. Genome Research. 19: 826-37. PMID 19307593 DOI: 10.1101/Gr.087577.108  1
2008 Pemberton TJ, Jakobsson M, Conrad DF, Coop G, Wall JD, Pritchard JK, Patel PI, Rosenberg NA. Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India. Annals of Human Genetics. 72: 535-46. PMID 18513279 DOI: 10.1111/J.1469-1809.2008.00457.X  1
2008 Coop G, Bullaughey K, Luca F, Przeworski M. The timing of selection at the human FOXP2 gene. Molecular Biology and Evolution. 25: 1257-9. PMID 18413354 DOI: 10.1093/Molbev/Msn091  1
2008 Shimizu KK, Reininga JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Purugganan MD. Retraction. Science (New York, N.Y.). 320: 176. PMID 18403691 DOI: 10.1126/science.320.5873.176a  1
2008 Hancock AM, Witonsky DB, Gordon AS, Eshel G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate in candidate genes for common metabolic disorders. Plos Genetics. 4: e32. PMID 18282109 DOI: 10.1371/Journal.Pgen.0040032  1
2008 Coop G, Wen X, Ober C, Pritchard JK, Przeworski M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science (New York, N.Y.). 319: 1395-8. PMID 18239090 DOI: 10.1126/Science.1151851  1
2008 Bullaughey K, Przeworski M, Coop G. No effect of recombination on the efficacy of natural selection in primates. Genome Research. 18: 544-54. PMID 18199888 DOI: 10.1101/Gr.071548.107  1
2007 Novembre J, Pritchard JK, Coop G. Adaptive drool in the gene pool. Nature Genetics. 39: 1188-90. PMID 17898775 DOI: 10.1038/Ng1007-1188  1
2007 Coop G, Myers SR. Live hot, die young: transmission distortion in recombination hotspots. Plos Genetics. 3: e35. PMID 17352536 DOI: 10.1371/journal.pgen.0030035  1
2007 Clark VJ, Ptak SE, Tiemann I, Qian Y, Coop G, Stone AC, Przeworski M, Arnheim N, Di Rienzo A. Combining sperm typing and linkage disequilibrium analyses reveals differences in selective pressures or recombination rates across human populations. Genetics. 175: 795-804. PMID 17151245 DOI: 10.1534/Genetics.106.064964  1
2007 Coop G, Przeworski M. An evolutionary view of human recombination. Nature Reviews. Genetics. 8: 23-34. PMID 17146469 DOI: 10.1038/Nrg1947  1
2006 Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM. Sequencing and analysis of Neanderthal genomic DNA. Science (New York, N.Y.). 314: 1113-8. PMID 17110569 DOI: 10.1126/Science.1131412  1
2006 Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics. 38: 1251-60. PMID 17057719 DOI: 10.1038/Ng1911  1
2006 Teshima KM, Coop G, Przeworski M. How reliable are empirical genomic scans for selective sweeps? Genome Research. 16: 702-12. PMID 16687733 DOI: 10.1101/Gr.5105206  1
2006 Xue Y, Daly A, Yngvadottir B, Liu M, Coop G, Kim Y, Sabeti P, Chen Y, Stalker J, Huckle E, Burton J, Leonard S, Rogers J, Tyler-Smith C. Spread of an inactive form of caspase-12 in humans is due to recent positive selection. American Journal of Human Genetics. 78: 659-70. PMID 16532395 DOI: 10.1086/503116  1
2006 Hanchard NA, Rockett KA, Spencer C, Coop G, Pinder M, Jallow M, Kimber M, McVean G, Mott R, Kwiatkowski DP. Screening for recently selected alleles by analysis of human haplotype similarity. American Journal of Human Genetics. 78: 153-9. PMID 16385459 DOI: 10.1086/499252  1
2005 Coop G. Can a genome change its (hot)spots? Trends in Ecology & Evolution. 20: 643-5. PMID 16701448 DOI: 10.1016/J.Tree.2005.10.006  1
2005 Przeworski M, Coop G, Wall JD. The signature of positive selection on standing genetic variation. Evolution; International Journal of Organic Evolution. 59: 2312-23. PMID 16396172 DOI: 10.1111/J.0014-3820.2005.Tb00941.X  1
2005 Römpler H, Schulz A, Pitra C, Coop G, Przeworski M, Pääbo S, Schöneberg T. The rise and fall of the chemoattractant receptor GPR33. The Journal of Biological Chemistry. 280: 31068-75. PMID 15987686 DOI: 10.1074/Jbc.M503586200  1
2004 Shimizu KK, Cork JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Awadalla P, Purugganan MD. Darwinian selection on a selfing locus. Science (New York, N.Y.). 306: 2081-4. PMID 15604405 DOI: 10.1126/Science.1103776  1
2004 Coop G, Griffiths RC. Ancestral inference on gene trees under selection. Theoretical Population Biology. 66: 219-32. PMID 15465123 DOI: 10.1016/J.Tpb.2004.06.006  1
2004 Spencer CC, Coop G. SelSim: a program to simulate population genetic data with natural selection and recombination. Bioinformatics (Oxford, England). 20: 3673-5. PMID 15271777 DOI: 10.1093/Bioinformatics/Bth417  1
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