Carlos Machado - Publications

Affiliations: 
University of Maryland, College Park, College Park, MD 

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Tian E, Nason JD, Machado CA, Zheng L, Yu H, Kjellberg F. Lack of genetic isolation by distance, similar genetic structuring but different demographic histories in a fig-pollinating wasp mutualism. Molecular Ecology. PMID 26518361 DOI: 10.1111/mec.13438  1
2015 Martinson EO, Hackett JD, Machado CA, Arnold AE. Metatranscriptome Analysis of Fig Flowers Provides Insights into Potential Mechanisms for Mutualism Stability and Gall Induction. Plos One. 10: e0130745. PMID 26090817 DOI: 10.1371/journal.pone.0130745  1
2015 Flores-López CA, Machado CA. Differences in inferred genome-wide signals of positive selection during the evolution of Trypanosoma cruzi and Leishmania spp. lineages: A result of disparities in host and tissue infection ranges? Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 33: 37-46. PMID 25891283 DOI: 10.1016/j.meegid.2015.04.008  1
2015 Yang LY, Machado CA, Dang XD, Peng YQ, Yang DR, Zhang DY, Liao WJ. The incidence and pattern of copollinator diversification in dioecious and monoecious figs. Evolution; International Journal of Organic Evolution. 69: 294-304. PMID 25495152 DOI: 10.1111/evo.12584  1
2014 Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, ... ... Machado CA, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/ng.3044  1
2014 Martinson EO, Jandér KC, Peng YQ, Chen HH, Machado CA, Arnold AE, Herre EA. Relative investment in egg load and poison sac in fig wasps: Implications for physiological mechanisms underlying seed and wasp production in figs Acta Oecologica. 57: 58-66. DOI: 10.1016/j.actao.2013.07.009  1
2013 Ahanchédé A, Alfaya JE, Andersen LW, Azam D, Bautista MA, Besnard AL, Bigatti G, Bouétard A, Coutellec MA, Ewédjè EE, Fuseya R, García-Jiménez R, Haratian M, Hardy OJ, ... ... Machado CA, et al. Permanent genetic resources added to Molecular Ecology Resources Database 1 August 2012 - 30 September 2012. Molecular Ecology Resources. 13: 158-9. PMID 23176377 DOI: 10.1111/1755-0998.12035  1
2013 Ranz JM, Yeh SD, Nyberg KG, Machado CA. Transcriptome Profiling of Drosophila Interspecific Hybrids: Insights into Mechanisms of Regulatory Divergence and Hybrid Dysfunction Polyploid and Hybrid Genomics. 15-35. DOI: 10.1002/9781118552872.ch2  1
2012 Heer K, Machado CA, Himler AG, Herre EA, Kalko EK, Dick CW. Anonymous and EST-based microsatellite DNA markers that transfer broadly across the fig tree genus (Ficus, Moraceae). American Journal of Botany. 99: e330-3. PMID 22847539 DOI: 10.3732/ajb.1200032  1
2012 Martinson EO, Herre EA, Machado CA, Arnold AE. Culture-free survey reveals diverse and distinctive fungal communities associated with developing figs (Ficus spp.) in Panama. Microbial Ecology. 64: 1073-84. PMID 22729017 DOI: 10.1007/s00248-012-0079-x  1
2011 Flores-López CA, Machado CA. Analyses of 32 loci clarify phylogenetic relationships among Trypanosoma cruzi lineages and support a single hybridization prior to human contact. Plos Neglected Tropical Diseases. 5: e1272. PMID 21829751 DOI: 10.1371/journal.pntd.0001272  1
2011 Jiang ZF, Croshaw DA, Wang Y, Hey J, Machado CA. Enrichment of mRNA-like noncoding RNAs in the divergence of Drosophila males. Molecular Biology and Evolution. 28: 1339-48. PMID 21041796 DOI: 10.1093/molbev/msq293  1
2009 Himler AG, Machado CA. Host specificity, phenotype matching and the evolution of reproductive isolation in a coevolved plant-pollinator mutualism. Molecular Ecology. 18: 4988-90. PMID 20025657 DOI: 10.1111/j.1365-294X.2009.04429.x  1
2009 Jiang ZF, Machado CA. Evolution of sex-dependent gene expression in three recently diverged species of Drosophila. Genetics. 183: 1175-85. PMID 19720861 DOI: 10.1534/genetics.109.105775  1
2009 Lopez-Vaamonde C, Wikström N, Kjer KM, Weiblen GD, Rasplus JY, Machado CA, Cook JM. Molecular dating and biogeography of fig-pollinating wasps. Molecular Phylogenetics and Evolution. 52: 715-26. PMID 19500682 DOI: 10.1016/j.ympev.2009.05.028  1
2008 Schaeffer SW, Bhutkar A, McAllister BF, Matsuda M, Matzkin LM, O'Grady PM, Rohde C, Valente VL, Aguadé M, Anderson WW, Edwards K, Garcia AC, Goodman J, Hartigan J, Kataoka E, ... ... Machado CA, et al. Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics. 179: 1601-55. PMID 18622037 DOI: 10.1534/genetics.107.086074  1
2008 Herre EA, Jandér KC, Machado CA. Evolutionary ecology of figs and their associates: Recent progress and outstanding puzzles Annual Review of Ecology, Evolution, and Systematics. 39: 439-458. DOI: 10.1146/annurev.ecolsys.37.091305.110232  1
2008 Jackson AP, Machado CA, Robbins N, Herre EA. Multi-locus phylogenetic analysis of neotropical figs does not support co-speciation with the pollinators: The importance of systematic scale in fig/wasp cophylogenetic studies Symbiosis. 45: 57-72.  1
2007 Noor MA, Garfield DA, Schaeffer SW, Machado CA. Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions. Genetics. 177: 1417-28. PMID 18039875 DOI: 10.1534/genetics.107.070672  1
2007 Machado CA, Matzkin LM, Reed LK, Markow TA. Multilocus nuclear sequences reveal intra- and interspecific relationships among chromosomally polymorphic species of cactophilic Drosophila. Molecular Ecology. 16: 3009-24. PMID 17614914 DOI: 10.1111/j.1365-294X.2007.03325.x  1
2007 Marussich WA, Machado CA. Host-specificity and coevolution among pollinating and nonpollinating New World fig wasps. Molecular Ecology. 16: 1925-46. PMID 17444902 DOI: 10.1111/j.1365-294X.2007.03278.x  1
2007 Machado CA, Haselkorn TS, Noor MA. Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis. Genetics. 175: 1289-306. PMID 17179068 DOI: 10.1534/genetics.106.064758  1
2007 Vuissoz A, Worobey M, Odegaard N, Bunce M, Machado CA, Lynnerup N, Peacock EE, Gilbert MTP. The survival of PCR-amplifiable DNA in cow leather Journal of Archaeological Science. 34: 823-829. DOI: 10.1016/j.jas.2006.09.002  1
2006 Matzkin LM, Watts TD, Bitler BG, Machado CA, Markow TA. Functional genomics of cactus host shifts in Drosophila mojavensis. Molecular Ecology. 15: 4635-43. PMID 17107489 DOI: 10.1111/j.1365-294X.2006.03102.x  1
2006 Ranz JM, Machado CA. Uncovering evolutionary patterns of gene expression using microarrays. Trends in Ecology & Evolution. 21: 29-37. PMID 16701467 DOI: 10.1016/j.tree.2005.09.002  1
2005 Rønsted N, Weiblen GD, Cook JM, Salamin N, Machado CA, Savolainen V. 60 million years of co-divergence in the fig-wasp symbiosis. Proceedings. Biological Sciences / the Royal Society. 272: 2593-9. PMID 16321781 DOI: 10.1098/rspb.2005.3249  1
2005 Machado CA, Robbins N, Gilbert MT, Herre EA. Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism. Proceedings of the National Academy of Sciences of the United States of America. 102: 6558-65. PMID 15851680 DOI: 10.1073/pnas.0501840102  1
2004 Molbo D, Machado CA, Herre EA, Keller L. Inbreeding and population structure in two pairs of cryptic fig wasp species. Molecular Ecology. 13: 1613-23. PMID 15140104 DOI: 10.1111/j.1365-294X.2004.02158.x  1
2003 Hey J, Machado CA. The study of structured populations--new hope for a difficult and divided science. Nature Reviews. Genetics. 4: 535-43. PMID 12838345 DOI: 10.1038/nrg1112  1
2003 Machado CA, Hey J. The causes of phylogenetic conflict in a classic Drosophila species group. Proceedings. Biological Sciences / the Royal Society. 270: 1193-202. PMID 12816659 DOI: 10.1098/rspb.2003.2333  1
2003 Molbo D, Machado CA, Sevenster JG, Keller L, Herre EA. Cryptic species of fig-pollinating wasps: implications for the evolution of the fig-wasp mutualism, sex allocation, and precision of adaptation. Proceedings of the National Academy of Sciences of the United States of America. 100: 5867-72. PMID 12714682 DOI: 10.1073/pnas.0930903100  1
2002 Shoemaker DD, Machado CA, Molbo D, Werren JH, Windsor DM, Herre EA. The distribution of Wolbachia in fig wasps: correlations with host phylogeny, ecology and population structure. Proceedings. Biological Sciences / the Royal Society. 269: 2257-67. PMID 12427319 DOI: 10.1098/rspb.2002.2100  1
2002 Machado CA, Ayala FJ. Sequence variation in the dihydrofolate reductase-thymidylate synthase (DHFR-TS) and trypanothione reductase (TR) genes of Trypanosoma cruzi. Molecular and Biochemical Parasitology. 121: 33-47. PMID 11985861 DOI: 10.1016/S0166-6851(02)00019-1  1
2002 Machado CA, Kliman RM, Markert JA, Hey J. Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Molecular Biology and Evolution. 19: 472-88. PMID 11919289  1
2001 Machado CA, Ayala FJ. Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi. Proceedings of the National Academy of Sciences of the United States of America. 98: 7396-401. PMID 11416213 DOI: 10.1073/pnas.121187198  1
2001 Machado CA, Jousselin E, Kjellberg F, Compton SG, Herre EA. Phylogenetic relationships, historical biogeography and character evolution of fig-pollinating wasps Proceedings of the Royal Society B: Biological Sciences. 268: 685-694. PMID 11321056 DOI: 10.1098/rspb.2000.1418  1
2001 Noor MA, Kliman RM, Machado CA. Evolutionary history of microsatellites in the obscura group of Drosophila. Molecular Biology and Evolution. 18: 551-6. PMID 11264406  1
2001 West SA, Murray MG, Machado CA, Griffin AS, Herre EA. Testing Hamilton's rule with competition between relatives Nature. 409: 510-513. PMID 11206546 DOI: 10.1038/35054057  1
1996 Herre EA, Machado CA, Bermingham E, Nason JD, Windsor DM, McCafferty SS, Van Houten W, Bachmann K. Molecular phylogenies of figs and their pollinator wasps Journal of Biogeography. 23: 521-530.  1
1996 Machado CA, Herre EA, McCafferty S, Bermingham E. Molecular phylogenies of fig pollinating and non-pollinating wasps and the implications for the origin and evolution of the fig-fig wasp mutualism Journal of Biogeography. 23: 531-542.  1
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