| Year |
Citation |
Score |
| 2024 |
Sullivan SA, Orosco JC, Callejas-Hernández F, Blow F, Lee H, Ranallo-Benavidez T, Peters A, Raidal S, Girard YA, Johnson CK, Rogers K, Gerhold R, Mangelson H, Liachko I, Srivastava H, ... ... Carlton JM, et al. Comparative genomics of the sexually transmitted parasite reveals relaxed and convergent evolution and genes involved in spillover from birds to humans. Biorxiv : the Preprint Server For Biology. PMID 39763951 DOI: 10.1101/2024.12.22.629724 |
0.529 |
|
| 2024 |
Mohanty S, Jones AM, Dash S, Chhatria SR, Padhan TK, Mohanty S, Carlton JM, Ompad DC, Kessler A, Sahu PK. Genetic Characterization of Plasmodium falciparum Histidine-Rich Protein 2 Deletions and Their Impact on Malaria Interventions in Odisha, India. The American Journal of Tropical Medicine and Hygiene. PMID 39689364 DOI: 10.4269/ajtmh.24-0330 |
0.349 |
|
| 2024 |
Mpeyako LA, Hart AJ, Bailey NP, Carlton JM, Henrissat B, Sullivan SA, Hirt RP. Comparative genomics between and : CAZymes and candidate virulence factors. Frontiers in Microbiology. 15: 1437572. PMID 39086644 DOI: 10.3389/fmicb.2024.1437572 |
0.327 |
|
| 2024 |
Nikulkova M, Abdrabou W, Carlton JM, Idaghdour Y. Exploiting integrative metabolomics to study host-parasite interactions in Plasmodium infections. Trends in Parasitology. PMID 38508901 DOI: 10.1016/j.pt.2024.02.007 |
0.321 |
|
| 2024 |
Cepeda AS, Mello B, Pacheco MA, Luo Z, Sullivan SA, Carlton JM, Escalante AA. The genome of Plasmodium gonderi: Insights into the evolution of human malaria parasites. Genome Biology and Evolution. PMID 38376987 DOI: 10.1093/gbe/evae027 |
0.48 |
|
| 2021 |
Warring SD, Blow F, Avecilla G, Orosco JC, Sullivan SA, Carlton JM. Small RNAs Are Implicated in Regulation of Gene and Transposable Element Expression in the Protist Trichomonas vaginalis. Msphere. 6. PMID 33408230 DOI: 10.1128/mSphere.01061-20 |
0.399 |
|
| 2020 |
Kolisko M, Flegontova O, Karnkowska A, Lax G, Maritz JM, Pánek T, Táborský P, Carlton JM, Čepička I, Horák A, Lukeš J, Simpson AGB, Tai V. EukRef-excavates: seven curated SSU ribosomal RNA gene databases. Database : the Journal of Biological Databases and Curation. 2020. PMID 33216898 DOI: 10.1093/database/baaa080 |
0.486 |
|
| 2017 |
Bradic M, Warring SD, Tooley GE, Scheid P, Secor WE, Land KM, Huang PJ, Chen TW, Lee CC, Tang P, Sullivan SA, Carlton JM. Genetic indicators of drug resistance in the highly repetitive genome of Trichomonas vaginalis. Genome Biology and Evolution. PMID 28633446 DOI: 10.1093/gbe/evx110 |
0.315 |
|
| 2017 |
Maritz JM, Rogers KH, Rock TM, Liu N, Joseph S, Land KM, Carlton JM. An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads. Microbial Ecology. PMID 28540488 DOI: 10.1007/s00248-017-0996-9 |
0.343 |
|
| 2016 |
Hupalo DN, Luo Z, Melnikov A, Sutton PL, Rogov P, Escalante A, Vallejo AF, Herrera S, Arévalo-Herrera M, Fan Q, Wang Y, Cui L, Lucas CM, Durand S, Sanchez JF, ... ... Carlton JM, et al. Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax. Nature Genetics. PMID 27348298 DOI: 10.1038/Ng.3588 |
0.354 |
|
| 2016 |
Kar NP, Chauhan K, Nanda N, Kumar A, Carlton JM, Das A. Comparative assessment on the prevalence of mutation in the Plasmodium falciparum drug-resistant genes in two different ecotypes of Odisha state, India. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 26988711 DOI: 10.1016/j.meegid.2016.03.014 |
0.327 |
|
| 2016 |
Sutton PL, Luo Z, Divis PC, Friedrich VK, Conway DJ, Singh B, Barnwell JW, Carlton JM, Sullivan SA. Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 26980604 DOI: 10.1016/j.meegid.2016.03.009 |
0.336 |
|
| 2015 |
Carlton JM, Volkman SK, Uplekar S, Hupalo DN, Pereira Alves JM, Cui L, Donnelly M, Roos DS, Harb OS, Acosta M, Read A, Ribolla PE, Singh OP, Valecha N, Wassmer SC, et al. Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research. The American Journal of Tropical Medicine and Hygiene. 93: 87-98. PMID 26259940 DOI: 10.4269/Ajtmh.15-0049 |
0.414 |
|
| 2015 |
Luo Z, Sullivan SA, Carlton JM. The biology of Plasmodium vivax explored through genomics. Annals of the New York Academy of Sciences. 1342: 53-61. PMID 25693446 DOI: 10.1111/nyas.12708 |
0.395 |
|
| 2015 |
Hupalo DN, Bradic M, Carlton JM. The impact of genomics on population genetics of parasitic diseases. Current Opinion in Microbiology. 23: 49-54. PMID 25461572 DOI: 10.1016/J.Mib.2014.11.001 |
0.512 |
|
| 2014 |
Rice BL, Acosta MM, Pacheco MA, Carlton JM, Barnwell JW, Escalante AA. The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites. Molecular Phylogenetics and Evolution. 78: 172-84. PMID 24862221 DOI: 10.1016/j.ympev.2014.05.013 |
0.414 |
|
| 2013 |
Prajapati SK, Joshi H, Carlton JM, Rizvi MA. Neutral polymorphisms in putative housekeeping genes and tandem repeats unravels the population genetics and evolutionary history of Plasmodium vivax in India. Plos Neglected Tropical Diseases. 7: e2425. PMID 24069480 DOI: 10.1371/journal.pntd.0002425 |
0.34 |
|
| 2013 |
Carlton JM, Das A, Escalante AA. Genomics, population genetics and evolutionary history of Plasmodium vivax. Advances in Parasitology. 81: 203-22. PMID 23384624 DOI: 10.1016/B978-0-12-407826-0.00005-9 |
0.449 |
|
| 2013 |
Conrad MD, Bradic M, Warring SD, Gorman AW, Carlton JM. Getting trichy: tools and approaches to interrogating Trichomonas vaginalis in a post-genome world. Trends in Parasitology. 29: 17-25. PMID 23219217 DOI: 10.1016/J.Pt.2012.10.004 |
0.338 |
|
| 2012 |
Tachibana S, Sullivan SA, Kawai S, Nakamura S, Kim HR, Goto N, Arisue N, Palacpac NM, Honma H, Yagi M, Tougan T, Katakai Y, Kaneko O, Mita T, Kita K, ... ... Carlton JM, et al. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Nature Genetics. 44: 1051-5. PMID 22863735 DOI: 10.1038/Ng.2375 |
0.455 |
|
| 2012 |
Neafsey DE, Galinsky K, Jiang RH, Young L, Sykes SM, Saif S, Gujja S, Goldberg JM, Young S, Zeng Q, Chapman SB, Dash AP, Anvikar AR, Sutton PL, Birren BW, ... ... Carlton JM, et al. The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum. Nature Genetics. 44: 1046-50. PMID 22863733 DOI: 10.1038/Ng.2373 |
0.449 |
|
| 2012 |
Conrad MD, Gorman AW, Schillinger JA, Fiori PL, Arroyo R, Malla N, Dubey ML, Gonzalez J, Blank S, Secor WE, Carlton JM. Extensive genetic diversity, unique population structure and evidence of genetic exchange in the sexually transmitted parasite Trichomonas vaginalis. Plos Neglected Tropical Diseases. 6: e1573. PMID 22479659 DOI: 10.1371/Journal.Pntd.0001573 |
0.348 |
|
| 2011 |
Malik SB, Brochu CD, Bilic I, Yuan J, Hess M, Logsdon JM, Carlton JM. Phylogeny of parasitic parabasalia and free-living relatives inferred from conventional markers vs. Rpb1, a single-copy gene. Plos One. 6: e20774. PMID 21695260 DOI: 10.1371/Journal.Pone.0020774 |
0.5 |
|
| 2011 |
Li J, Pattaradilokrat S, Zhu F, Jiang H, Liu S, Hong L, Fu Y, Koo L, Xu W, Pan W, Carlton JM, Kaneko O, Carter R, Wootton JC, Su XZ. Linkage maps from multiple genetic crosses and loci linked to growth-related virulent phenotype in Plasmodium yoelii. Proceedings of the National Academy of Sciences of the United States of America. 108: E374-82. PMID 21690382 DOI: 10.1073/Pnas.1102261108 |
0.323 |
|
| 2011 |
Silva JC, Egan A, Friedman R, Munro JB, Carlton JM, Hughes AL. Genome sequences reveal divergence times of malaria parasite lineages. Parasitology. 138: 1737-49. PMID 21118608 DOI: 10.1017/S0031182010001575 |
0.405 |
|
| 2011 |
Conrad M, Zubacova Z, Dunn LA, Upcroft J, Sullivan SA, Tachezy J, Carlton JM. Microsatellite polymorphism in the sexually transmitted human pathogen Trichomonas vaginalis indicates a genetically diverse parasite. Molecular and Biochemical Parasitology. 175: 30-8. PMID 20813140 DOI: 10.1016/j.molbiopara.2010.08.006 |
0.363 |
|
| 2010 |
Westenberger SJ, McClean CM, Chattopadhyay R, Dharia NV, Carlton JM, Barnwell JW, Collins WE, Hoffman SL, Zhou Y, Vinetz JM, Winzeler EA. A systems-based analysis of Plasmodium vivax lifecycle transcription from human to mosquito. Plos Neglected Tropical Diseases. 4: e653. PMID 20386602 DOI: 10.1371/Journal.Pntd.0000653 |
0.331 |
|
| 2009 |
Li J, Zhang Y, Liu S, Hong L, Sullivan M, McCutchan TF, Carlton JM, Su XZ. Hundreds of microsatellites for genotyping Plasmodium yoelii parasites. Molecular and Biochemical Parasitology. 166: 153-8. PMID 19450732 DOI: 10.1016/j.molbiopara.2009.03.011 |
0.398 |
|
| 2009 |
Aurrecoechea C, Brestelli J, Brunk BP, Carlton JM, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, et al. GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Research. 37: D526-30. PMID 18824479 DOI: 10.1093/Nar/Gkn631 |
0.391 |
|
| 2008 |
Carlton JM, Escalante AA, Neafsey D, Volkman SK. Comparative evolutionary genomics of human malaria parasites. Trends in Parasitology. 24: 545-50. PMID 18938107 DOI: 10.1016/J.Pt.2008.09.003 |
0.476 |
|
| 2008 |
Bozdech Z, Mok S, Hu G, Imwong M, Jaidee A, Russell B, Ginsburg H, Nosten F, Day NP, White NJ, Carlton JM, Preiser PR. The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites. Proceedings of the National Academy of Sciences of the United States of America. 105: 16290-5. PMID 18852452 DOI: 10.1073/pnas.0807404105 |
0.399 |
|
| 2008 |
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature. 455: 757-63. PMID 18843361 DOI: 10.1038/Nature07327 |
0.471 |
|
| 2008 |
Joy DA, Gonzalez-Ceron L, Carlton JM, Gueye A, Fay M, McCutchan TF, Su XZ. Local adaptation and vector-mediated population structure in Plasmodium vivax malaria Molecular Biology and Evolution. 25: 1245-1252. PMID 18385220 DOI: 10.1093/molbev/msn073 |
0.323 |
|
| 2008 |
Zhou Y, Ramachandran V, Kumar KA, Westenberger S, Refour P, Zhou B, Li F, Young JA, Chen K, Plouffe D, Henson K, Nussenzweig V, Carlton J, Vinetz JM, Duraisingh MT, et al. Evidence-based annotation of the malaria parasite's genome using comparative expression profiling. Plos One. 3: e1570. PMID 18270564 DOI: 10.1371/Journal.Pone.0001570 |
0.475 |
|
| 2007 |
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, et al. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (New York, N.Y.). 315: 207-12. PMID 17218520 DOI: 10.1126/Science.1132894 |
0.499 |
|
| 2006 |
Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, ... ... Carlton JM, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/Journal.Pbio.0040286 |
0.526 |
|
| 2006 |
Sargeant TJ, Marti M, Caler E, Carlton JM, Simpson K, Speed TP, Cowman AF. Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites Genome Biology. 7. PMID 16507167 DOI: 10.1186/gb-2006-7-2-r12 |
0.39 |
|
| 2006 |
Lal K, Field MC, Carlton JM, Warwicker J, Hirt RP. Identification of a very large Rab GTPase family in the parasitic protozoan Trichomonas vaginalis. Molecular and Biochemical Parasitology. 143: 226-35. PMID 16099517 DOI: 10.1016/j.molbiopara.2005.06.008 |
0.351 |
|
| 2005 |
Kooij TW, Carlton JM, Bidwell SL, Hall N, Ramesar J, Janse CJ, Waters AP. A Plasmodium whole-genome synteny map: indels and synteny breakpoints as foci for species-specific genes. Plos Pathogens. 1: e44. PMID 16389297 DOI: 10.1371/journal.ppat.0010044 |
0.533 |
|
| 2005 |
Cui L, Fan Q, Hu Y, Karamycheva SA, Quackenbush J, Khuntirat B, Sattabongkot J, Carlton JM. Gene discovery in Plasmodium vivax through sequencing of ESTs from mixed blood stages. Molecular and Biochemical Parasitology. 144: 1-9. PMID 16085323 DOI: 10.1016/J.Molbiopara.2005.05.016 |
0.456 |
|
| 2005 |
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, ... ... Carlton JM, et al. Comparative genomics of trypanosomatid parasitic protozoa. Science (New York, N.Y.). 309: 404-9. PMID 16020724 DOI: 10.1126/Science.1112181 |
0.529 |
|
| 2005 |
Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, et al. Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science (New York, N.Y.). 309: 134-7. PMID 15994558 DOI: 10.1126/Science.1110439 |
0.558 |
|
| 2005 |
Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ. Host switch leads to emergence of Plasmodium vivax malaria in humans. Molecular Biology and Evolution. 22: 1686-93. PMID 15858201 DOI: 10.1093/Molbev/Msi160 |
0.386 |
|
| 2005 |
Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, et al. A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Science (New York, N.Y.). 307: 82-6. PMID 15637271 DOI: 10.1126/Science.1103717 |
0.51 |
|
| 2005 |
Carlton J, Silva J, Hall N. The genome of model malaria parasites, and comparative genomics Current Issues in Molecular Biology. 7: 23-38. PMID 15580778 |
0.533 |
|
| 2005 |
Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM. A potentially functional mariner transposable element in the protist Trichomonas vaginalis. Molecular Biology and Evolution. 22: 126-34. PMID 15371525 DOI: 10.1093/molbev/msh260 |
0.376 |
|
| 2004 |
Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, ... ... Carlton J, et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature. 432: 910-3. PMID 15602564 DOI: 10.1038/Nature03170 |
0.419 |
|
| 2004 |
Hunt P, Martinelli A, Fawcett R, Carlton J, Carter R, Walliker D. Gene synteny and chloroquine resistance in Plasmodium chabaudi. Molecular and Biochemical Parasitology. 136: 157-64. PMID 15478795 DOI: 10.1016/J.Molbiopara.2004.03.008 |
0.314 |
|
| 2004 |
Hunt P, Cravo PV, Donleavy P, Carlton JM, Walliker D. Chloroquine resistance in Plasmodium chabaudi: are chloroquine-resistance transporter (crt) and multi-drug resistance (mdr1) orthologues involved? Molecular and Biochemical Parasitology. 133: 27-35. PMID 14668009 DOI: 10.1016/J.Molbiopara.2003.08.010 |
0.39 |
|
| 2003 |
Gomez JC, McNamara DT, Bockarie MJ, Baird JK, Carlton JM, Zimmerman PA. Identification of a polymorphic Plasmodium vivax microsatellite marker. The American Journal of Tropical Medicine and Hygiene. 69: 377-9. PMID 14640496 |
0.327 |
|
| 2003 |
Dame JB, Yowell CA, Omara-Opyene L, Carlton JM, Cooper RA, Li T. Plasmepsin 4, the food vacuole aspartic proteinase found in all Plasmodium spp. infecting man. Molecular and Biochemical Parasitology. 130: 1-12. PMID 14550891 DOI: 10.1016/S0166-6851(03)00137-3 |
0.383 |
|
| 2003 |
Feng X, Carlton JM, Joy DA, Mu J, Furuya T, Suh BB, Wang Y, Barnwell JW, Su XZ. Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. Proceedings of the National Academy of Sciences of the United States of America. 100: 8502-7. PMID 12799466 DOI: 10.1073/pnas.1232502100 |
0.414 |
|
| 2003 |
Cravo PV, Carlton JM, Hunt P, Bisoni L, Padua RA, Walliker D. Genetics of mefloquine resistance in the rodent malaria parasite Plasmodium chabaudi. Antimicrobial Agents and Chemotherapy. 47: 709-18. PMID 12543682 DOI: 10.1128/Aac.47.2.709-718.2003 |
0.356 |
|
| 2002 |
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B, Jarrahi B, Brenner M, Parvizi B, Tallon L, Moazzez A, et al. Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. Nature. 419: 531-4. PMID 12368868 DOI: 10.1038/nature01094 |
0.327 |
|
| 2002 |
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL, Peterson JD, Pop M, Kosack DS, Shumway MF, Bidwell SL, et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419: 512-9. PMID 12368865 DOI: 10.1038/Nature01099 |
0.522 |
|
| 2002 |
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419: 498-511. PMID 12368864 DOI: 10.1038/Nature01097 |
0.554 |
|
| 2002 |
Delcher AL, Phillippy A, Carlton J, Salzberg SL. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Research. 30: 2478-83. PMID 12034836 DOI: 10.1093/Nar/30.11.2478 |
0.42 |
|
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