| Year |
Citation |
Score |
| 2024 |
Tian Y, Gao Y, Turumtay H, Turumtay EA, Chai YN, Choudhary H, Park JH, Wu CY, De Ben CM, Dalton J, Louie KB, Harwood T, Chin D, Vuu KM, Bowen BP, ... ... Northen TR, et al. Engineered reduction of S-adenosylmethionine alters lignin in sorghum. Biotechnology For Biofuels and Bioproducts. 17: 128. PMID 39407217 DOI: 10.1186/s13068-024-02572-8 |
0.543 |
|
| 2024 |
Baker NR, Zhalnina K, Yuan M, Herman D, Ceja-Navarro JA, Sasse J, Jordan JS, Bowen BP, Wu L, Fossum C, Chew A, Fu Y, Saha M, Zhou J, Pett-Ridge J, ... Northen TR, et al. Nutrient and moisture limitations reveal keystone metabolites linking rhizosphere metabolomes and microbiomes. Proceedings of the National Academy of Sciences of the United States of America. 121: e2303439121. PMID 39093948 DOI: 10.1073/pnas.2303439121 |
0.607 |
|
| 2024 |
Akyuz Turumtay E, Turumtay H, Tian Y, Lin CY, Ning Chai Y, Louie KB, Chen Y, Lipzen A, Harwood T, Satish Kumar K, Bowen BP, Wang Q, Mansfield SD, Blow MJ, Petzold CJ, ... Northen TR, et al. Expression in poplar of dehydroshikimate dehydratase induces transcriptional and metabolic changes in the phenylpropanoid pathway. Journal of Experimental Botany. PMID 38809816 DOI: 10.1093/jxb/erae251 |
0.589 |
|
| 2024 |
Gomes PWP, Mannochio-Russo H, Schmid R, Zuffa S, Damiani T, Quiros-Guerrero LM, Caraballo-Rodríguez AM, Zhao HN, Yang H, Xing S, Charron-Lamoureux V, Chigumba DN, Sedio BE, Myers JA, Allard PM, ... ... Northen TR, et al. plantMASST - Community-driven chemotaxonomic digitization of plants. Biorxiv : the Preprint Server For Biology. PMID 38798440 DOI: 10.1101/2024.05.13.593988 |
0.584 |
|
| 2024 |
Liu Y, Zhao X, Gan F, Chen X, Deng K, Crowe SA, Hudson GA, Belcher MS, Schmidt M, Astolfi MCT, Kosina SM, Pang B, Shao M, Yin J, Sirirungruang S, ... ... Northen TR, et al. Complete biosynthesis of QS-21 in engineered yeast. Nature. PMID 38720067 DOI: 10.1038/s41586-024-07345-9 |
0.495 |
|
| 2024 |
Schadt C, Martin S, Carrell A, Fortner A, Hopp D, Jacobson D, Klingeman D, Kristy B, Phillips J, Piatkowski B, Miller MA, Smith M, Patil S, Flynn M, Canon S, ... ... Northen T, et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific Data. 11: 339. PMID 38580669 DOI: 10.1038/s41597-024-03069-7 |
0.583 |
|
| 2024 |
Pham LTM, Deng K, Choudhary H, Northen TR, Singer SW, Adams PD, Simmons BA, Sale KL. An Engineered Laccase from Accelerates Lignocellulose Degradation. Biomolecules. 14. PMID 38540744 DOI: 10.3390/biom14030324 |
0.605 |
|
| 2024 |
Feitosa-Junior OR, Lubbe A, Kosina SM, Martins-Junior J, Barbosa D, Baccari C, Zaini PA, Bowen BP, Northen TR, Lindow SE, da Silva AM. The Exometabolome of in Contact with Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones. Metabolites. 14. PMID 38392974 DOI: 10.3390/metabo14020082 |
0.61 |
|
| 2024 |
Markel K, Novak V, Bowen BP, Tian Y, Chen YC, Sirirungruang S, Zhou A, Louie KB, Northen TR, Eudes A, Scheller HV, Shih PM. Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant Physiology. PMID 38236304 DOI: 10.1093/plphys/kiae001 |
0.569 |
|
| 2024 |
Novak V, Andeer PF, Bowen BP, Ding Y, Zhalnina K, Hofmockel KS, Tomaka C, Harwood TV, van Winden MCM, Golini AN, Kosina SM, Northen TR. Reproducible growth of in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation. Science Advances. 10: eadg7888. PMID 38170767 DOI: 10.1126/sciadv.adg7888 |
0.596 |
|
| 2023 |
Zheng Q, Hu Y, Kosina SM, Van Goethem MW, Tringe SG, Bowen BP, Northen TR. Conservation of beneficial microbes between the rhizosphere and the cyanosphere. The New Phytologist. PMID 37668195 DOI: 10.1111/nph.19225 |
0.582 |
|
| 2023 |
Harwood TV, Treen DGC, Wang M, de Jong W, Northen TR, Bowen BP. BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports. 13: 13462. PMID 37596301 DOI: 10.1038/s41598-023-40496-9 |
0.554 |
|
| 2023 |
Chen Y, Gin JW, Wang Y, de Raad M, Tan S, Hillson NJ, Northen TR, Adams PD, Petzold CJ. Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format. Plos One. 18: e0288102. PMID 37418444 DOI: 10.1371/journal.pone.0288102 |
0.486 |
|
| 2023 |
Takasuka T, Kim H, Deng K, Bianchetti CM, Yamashita K, Beebe ET, Bergeman LF, Vander Meulen KA, Deutsch S, Ralph J, Adams PD, Northen TR, Fox BG. Quantitative analysis of The High Yield Hydrolysis of Kelp by Laminarinase and Alginate Lyase. Chembiochem : a European Journal of Chemical Biology. e202300357. PMID 37402642 DOI: 10.1002/cbic.202300357 |
0.639 |
|
| 2023 |
Ha NS, Onley JR, Deng K, Andeer P, Bowen BP, Gupta K, Kim PW, Kuch N, Kutschke M, Parker A, Song F, Fox B, Adams PD, de Raad M, Northen TR. A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening. Lab On a Chip. PMID 37401915 DOI: 10.1039/d2lc00980c |
0.764 |
|
| 2023 |
Davenport R, Bowen BP, Lynch LM, Kosina SM, Shabtai I, Northen TR, Lehmann J. Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter. Proceedings of the National Academy of Sciences of the United States of America. 120: e2303335120. PMID 37307452 DOI: 10.1073/pnas.2303335120 |
0.571 |
|
| 2023 |
Huang J, Quest A, Cruz-Morales P, Deng K, Pereira JH, Van Cura D, Kakumanu R, Baidoo EEK, Dan Q, Chen Y, Petzold CJ, Northen TR, Adams PD, Clark DS, Balskus EP, et al. Complete integration of carbene-transfer chemistry into biosynthesis. Nature. PMID 37138074 DOI: 10.1038/s41586-023-06027-2 |
0.614 |
|
| 2023 |
Englund E, Schmidt M, Nava AA, Lechner A, Deng K, Jocic R, Lin Y, Roberts J, Benites VT, Kakumanu R, Gin JW, Chen Y, Liu Y, Petzold CJ, Baidoo EEK, ... Northen TR, et al. Expanding Extender Substrate Selection for Unnatural Polyketide Biosynthesis by Acyltransferase Domain Exchange within a Modular Polyketide Synthase. Journal of the American Chemical Society. PMID 37057992 DOI: 10.1021/jacs.2c11027 |
0.615 |
|
| 2023 |
Palmer M, Covington JK, Zhou EM, Thomas SC, Habib N, Seymour CO, Lai D, Johnston J, Hashimi A, Jiao JY, Muok AR, Liu L, Xian WD, Zhi XY, Li MM, ... ... Northen TR, et al. Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past. The Isme Journal. PMID 37041326 DOI: 10.1038/s41396-023-01405-0 |
0.573 |
|
| 2023 |
de Raad M, Koper K, Deng K, Bowen BP, Maeda HA, Northen TR. Mass spectrometry imaging-based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme. The Journal of Biological Chemistry. 299: 102939. PMID 36702250 DOI: 10.1016/j.jbc.2023.102939 |
0.714 |
|
| 2022 |
Howard-Varona C, Roux S, Bowen BP, Silva LP, Lau R, Schwenck SM, Schwartz S, Woyke T, Northen T, Sullivan MB, Floge SA. Protist impacts on marine cyanovirocell metabolism. Isme Communications. 2: 94. PMID 37938263 DOI: 10.1038/s43705-022-00169-6 |
0.578 |
|
| 2022 |
Deng K, Wang X, Ing N, Opgenorth P, de Raad M, Kim J, Simmons BA, Adams PD, Singh AK, Lee TS, Northen TR. Rapid quantification of alcohol production in microorganisms based on nanostructure-initiator mass spectrometry (NIMS). Analytical Biochemistry. 114997. PMID 36435200 DOI: 10.1016/j.ab.2022.114997 |
0.603 |
|
| 2022 |
Wilhelm RC, Barnett SE, Swenson TL, Youngblut ND, Koechli CN, Bowen BP, Northen TR, Buckley DH. Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil. Applied and Environmental Microbiology. e0083922. PMID 36300927 DOI: 10.1128/aem.00839-22 |
0.581 |
|
| 2022 |
Tom LM, Aulitto M, Wu YW, Deng K, Gao Y, Xiao N, Rodriguez BG, Louime C, Northen TR, Eudes A, Mortimer JC, Adams PD, Scheller HV, Simmons BA, Ceja-Navarro JA, et al. Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction. Microbiome. 10: 183. PMID 36280858 DOI: 10.1186/s40168-022-01377-x |
0.615 |
|
| 2022 |
Wang Y, Wilhelm RC, Swenson TL, Silver A, Andeer PF, Golini A, Kosina SM, Bowen BP, Buckley DH, Northen TR. Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies. Frontiers in Microbiology. 13: 914472. PMID 35756023 DOI: 10.3389/fmicb.2022.914472 |
0.585 |
|
| 2022 |
de Raad M, Li YV, Kuehl JV, Andeer PF, Kosina SM, Hendrickson A, Saichek NR, Golini AN, Han Z, Wang Y, Bowen BP, Deutschbauer AM, Arkin AP, Chakraborty R, Northen TR. A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria. Frontiers in Microbiology. 13: 855331. PMID 35694313 DOI: 10.3389/fmicb.2022.855331 |
0.619 |
|
| 2022 |
Treen DGC, Wang M, Xing S, Louie KB, Huan T, Dorrestein PC, Northen TR, Bowen BP. SIMILE enables alignment of tandem mass spectra with statistical significance. Nature Communications. 13: 2510. PMID 35523965 DOI: 10.1038/s41467-022-30118-9 |
0.562 |
|
| 2021 |
Kosina SM, Rademacher P, Wetmore KM, de Raad M, Zemla M, Zane GM, Zulovich JJ, Chakraborty R, Bowen BP, Wall JD, Auer M, Arkin AP, Deutschbauer AM, Northen TR. Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Co-culture Biofilms. Frontiers in Microbiology. 12: 757856. PMID 34956122 DOI: 10.3389/fmicb.2021.757856 |
0.567 |
|
| 2021 |
Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, ... ... Northen TR, et al. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nature Methods. PMID 34862502 DOI: 10.1038/s41592-021-01339-5 |
0.551 |
|
| 2021 |
Carrell AA, Veličković D, Lawrence TJ, Bowen BP, Louie KB, Carper DL, Chu RK, Mitchell HD, Orr G, Markillie LM, Jawdy SS, Grimwood J, Shaw AJ, Schmutz J, Northen TR, et al. Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. The Isme Journal. PMID 34845335 DOI: 10.1038/s41396-021-01136-0 |
0.603 |
|
| 2021 |
Van Goethem MW, Osborn AR, Bowen BP, Andeer PF, Swenson TL, Clum A, Riley R, He G, Koriabine M, Sandor L, Yan M, Daum CG, Yoshinaga Y, Makhalanyane TP, Garcia-Pichel F, ... ... Northen TR, et al. Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics. Communications Biology. 4: 1302. PMID 34795375 DOI: 10.1038/s42003-021-02809-4 |
0.593 |
|
| 2021 |
Brisson V, Mayali X, Bowen B, Golini A, Thelen M, Stuart RK, Northen TR. Identification of Effector Metabolites Using Exometabolite Profiling of Diverse Microalgae. Msystems. e0083521. PMID 34726483 DOI: 10.1128/mSystems.00835-21 |
0.585 |
|
| 2021 |
Swift CL, Louie KB, Bowen BP, Hooker CA, Solomon KV, Singan V, Daum C, Pennacchio CP, Barry K, Shutthanandan V, Evans JE, Grigoriev IV, Northen TR, O'Malley MA. Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship. Mbio. e0144221. PMID 34399620 DOI: 10.1128/mBio.01442-21 |
0.609 |
|
| 2021 |
Jabusch LK, Kim PW, Chiniquy D, Zhao Z, Wang B, Bowen B, Kang AJ, Yoshikuni Y, Deutschbauer AM, Singh AK, Northen TR. Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant-Microbe Interactions. International Journal of Molecular Sciences. 22. PMID 34360661 DOI: 10.3390/ijms22157880 |
0.546 |
|
| 2021 |
Ing N, Deng K, Chen Y, Aulitto M, Gin JW, Pham TLM, Petzold CJ, Singer SW, Bowen B, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR. A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities. Scientific Reports. 11: 11803. PMID 34083602 DOI: 10.1038/s41598-021-91181-8 |
0.741 |
|
| 2021 |
Thomas SC, Payne D, Tamadonfar KO, Seymour CO, Jiao JY, Murugapiran SK, Lai D, Lau R, Bowen BP, Silva LP, Louie KB, Huntemann M, Clum A, Spunde A, Pillay M, ... ... Northen TR, et al. Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of and Three Candidate Species From China and Japan. Frontiers in Microbiology. 12: 632731. PMID 34017316 DOI: 10.3389/fmicb.2021.632731 |
0.587 |
|
| 2021 |
Pham LTM, Deng K, Northen TR, Singer SW, Adams PD, Simmons BA, Sale KL. Experimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporium. Biotechnology For Biofuels. 14: 108. PMID 33926536 DOI: 10.1186/s13068-021-01953-7 |
0.578 |
|
| 2021 |
Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, Salamov A, Mondo SJ, Solomon KV, Wright AT, Northen TR, Grigoriev IV, Keller NP, O'Malley MA. Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33906945 DOI: 10.1073/pnas.2019855118 |
0.622 |
|
| 2021 |
Lenz R, Louie K, Sondreli K, Galanie S, Chen JG, Muchero W, Bowen B, Northen T, Leboldus J. Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation. Phytopathology. PMID 33881913 DOI: 10.1094/PHYTO-02-21-0053-R |
0.564 |
|
| 2021 |
Calhoun S, Bell TAS, Dahlin LR, Kunde Y, LaButti K, Louie KB, Kuftin A, Treen D, Dilworth D, Mihaltcheva S, Daum C, Bowen BP, Northen TR, Guarnieri MT, Starkenburg SR, et al. A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology. Communications Biology. 4: 333. PMID 33712730 DOI: 10.1038/s42003-021-01859-y |
0.558 |
|
| 2021 |
Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan V, Northen TR, Zerbe P. Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 11: 333. PMID 33431904 DOI: 10.1038/s41598-020-79320-z |
0.608 |
|
| 2020 |
Glasgow EM, Kemna EI, Bingman CA, Ing N, Deng K, Bianchetti CM, Takasuka TE, Northen TR, Fox BG. A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis. The Journal of Biological Chemistry. 295: 17752-17769. PMID 33454012 DOI: 10.1074/jbc.RA120.015328 |
0.514 |
|
| 2020 |
Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. Mbio. 11. PMID 32843557 DOI: 10.1128/Mbio.01851-20 |
0.391 |
|
| 2020 |
Wang B, Zhao Z, Jabusch LK, Chiniquy DM, Ono K, Conway JM, Zhang Z, Wang G, Robinson D, Cheng JF, Dangl JL, Northen TR, Yoshikuni Y. CRAGE-Duet facilitates modular assembly of biological systems for studying plant-microbe interactions. Acs Synthetic Biology. PMID 32786359 DOI: 10.1021/Acssynbio.0C00280 |
0.341 |
|
| 2020 |
Malik AA, Swenson T, Weihe C, Morrison EW, Martiny JBH, Brodie EL, Northen TR, Allison SD. Drought and plant litter chemistry alter microbial gene expression and metabolite production. The Isme Journal. PMID 32444813 DOI: 10.1038/S41396-020-0683-6 |
0.348 |
|
| 2020 |
Ibrahim M, Fransson T, Chatterjee R, Cheah MH, Hussein R, Lassalle L, Sutherlin KD, Young ID, Fuller FD, Gul S, Kim IS, Simon PS, de Lichtenberg C, Chernev P, Bogacz I, ... ... Northen T, et al. Untangling the sequence of events during the S → S transition in photosystem II and implications for the water oxidation mechanism. Proceedings of the National Academy of Sciences of the United States of America. PMID 32434915 DOI: 10.1073/Pnas.2000529117 |
0.462 |
|
| 2019 |
Van Goethem MW, Swenson TL, Trubl G, Roux S, Northen TR. Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. Mbio. 10. PMID 31848272 DOI: 10.1128/Mbio.02287-19 |
0.349 |
|
| 2019 |
Doud DFR, Bowers RM, Schulz F, De Raad M, Deng K, Tarver A, Glasgow E, Vander Meulen K, Fox B, Deutsch S, Yoshikuni Y, Northen T, Hedlund BP, Singer SW, Ivanova N, et al. Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. The Isme Journal. PMID 31754206 DOI: 10.1038/S41396-019-0557-Y |
0.543 |
|
| 2019 |
Morton JT, Aksenov AA, Nothias LF, Foulds JR, Quinn RA, Badri MH, Swenson TL, Van Goethem MW, Northen TR, Vazquez-Baeza Y, Wang M, Bokulich NA, Watters A, Song SJ, Bonneau R, et al. Learning representations of microbe-metabolite interactions. Nature Methods. PMID 31686038 DOI: 10.1038/S41592-019-0616-3 |
0.322 |
|
| 2019 |
Brisson VL, Schmidt JE, Northen TR, Vogel JP, Gaudin ACM. Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil. Scientific Reports. 9: 15611. PMID 31666614 DOI: 10.1038/S41598-019-52148-Y |
0.331 |
|
| 2019 |
Chevrette MG, Carlos-Shanley C, Louie KB, Bowen BP, Northen TR, Currie CR. Taxonomic and Metabolic Incongruence in the Ancient Genus . Frontiers in Microbiology. 10: 2170. PMID 31616394 DOI: 10.3389/Fmicb.2019.02170 |
0.625 |
|
| 2019 |
Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, ... ... Northen T, et al. CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nature Microbiology. PMID 31611640 DOI: 10.1038/S41564-019-0573-8 |
0.627 |
|
| 2019 |
Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, ... Northen TR, et al. Cooking shapes the structure and function of the gut microbiome. Nature Microbiology. PMID 31570867 DOI: 10.1038/S41564-019-0569-4 |
0.591 |
|
| 2019 |
Couradeau E, Sasse J, Goudeau D, Nath N, Hazen TC, Bowen BP, Chakraborty R, Malmstrom RR, Northen TR. Probing the active fraction of soil microbiomes using BONCAT-FACS. Nature Communications. 10: 2770. PMID 31235780 DOI: 10.1038/S41467-019-10542-0 |
0.32 |
|
| 2019 |
de Rond T, Gao J, Zargar A, de Raad M, Cunha J, Northen TR, Keasling JD. A high-throughput mass spectrometric enzyme activity assay enabling the discovery of cytochrome P450 biocatalysts. Angewandte Chemie (International Ed. in English). PMID 31140688 DOI: 10.1002/Anie.201901782 |
0.366 |
|
| 2019 |
Roux S, Trubl G, Goudeau D, Nath N, Couradeau E, Ahlgren NA, Zhan Y, Marsan D, Chen F, Fuhrman JA, Northen TR, Sullivan MB, Rich VI, Malmstrom RR, Eloe-Fadrosh EA. Optimizing genome assembly from PCR-amplified metagenomes. Peerj. 7: e6902. PMID 31119088 DOI: 10.7717/Peerj.6902 |
0.304 |
|
| 2019 |
Diamond S, Andeer PF, Li Z, Crits-Christoph A, Burstein D, Anantharaman K, Lane KR, Thomas BC, Pan C, Northen TR, Banfield JF. Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Nature Microbiology. PMID 31110364 DOI: 10.1038/S41564-019-0449-Y |
0.375 |
|
| 2019 |
Opgenorth P, Costello Z, Okada T, Goyal G, Chen Y, Gin J, Benites VT, Raad M, Northen TR, Deng K, Deutsch S, Baidoo EEK, Petzold CJ, Hillson NJ, Garcia Martin H, et al. Lessons from two Design-Build-Test-Learn cycles of dodecanol production in Escherichia coli aided by machine learning. Acs Synthetic Biology. PMID 31072100 DOI: 10.1021/Acssynbio.9B00020 |
0.502 |
|
| 2019 |
Guzmán GI, Sandberg TE, LaCroix RA, Nyerges Á, Papp H, de Raad M, King ZA, Hefner Y, Northen TR, Notebaart RA, Pál C, Palsson BO, Papp B, Feist AM. Enzyme promiscuity shapes adaptation to novel growth substrates. Molecular Systems Biology. 15: e8462. PMID 30962359 DOI: 10.15252/Msb.20188462 |
0.384 |
|
| 2019 |
Erbilgin O, Rübel O, Louie KB, Trinh M, Raad M, Wildish T, Udwary D, Hoover C, Deutsch S, Northen TR, Bowen BP. MAGI: A method for metabolite, annotation, and gene integration. Acs Chemical Biology. PMID 30896917 DOI: 10.1021/Acschembio.8B01107 |
0.631 |
|
| 2019 |
Roth MS, Gallaher SD, Westcott DJ, Iwai M, Louie KB, Mueller M, Walter A, Foflonker F, Bowen BP, Ataii NN, Song J, Chen JH, Blaby-Haas C, Larabell C, Auer M, ... Northen T, et al. Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant Cell. PMID 30787178 DOI: 10.1105/Tpc.18.00742 |
0.621 |
|
| 2019 |
Swenson TL, Northen TR. Untargeted Soil Metabolomics Using Liquid Chromatography-Mass Spectrometry and Gas Chromatography-Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1859: 97-109. PMID 30421224 DOI: 10.1007/978-1-4939-8757-3_4 |
0.397 |
|
| 2018 |
Porcar M, Louie KB, Kosina SM, Van Goethem MW, Bowen BP, Tanner K, Northen TR. Microbial Ecology on Solar Panels in Berkeley, CA, United States. Frontiers in Microbiology. 9: 3043. PMID 30619134 DOI: 10.3389/Fmicb.2018.03043 |
0.636 |
|
| 2018 |
Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, ... ... Northen TR, et al. Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass. The New Phytologist. PMID 30585637 DOI: 10.1111/Nph.15662 |
0.625 |
|
| 2018 |
Deng K, Zeng J, Cheng G, Gao J, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR. Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS). Biotechnology For Biofuels. 11: 266. PMID 30275906 DOI: 10.1186/S13068-018-1261-2 |
0.676 |
|
| 2018 |
Kosina SM, Greiner AM, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. Bmc Microbiology. 18: 115. PMID 30208844 DOI: 10.1186/S12866-018-1256-Y |
0.624 |
|
| 2018 |
Duncombe TA, Raad M, Bowen BP, Singh AK, Northen TR. Insulator Nanostructure Desorption Ionization Mass Spectrometry. Analytical Chemistry. PMID 30063326 DOI: 10.1021/Acs.Analchem.8B01989 |
0.605 |
|
| 2018 |
Zhalnina K, Zengler K, Newman D, Northen TR. Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry. Mbio. 9. PMID 30018110 DOI: 10.1128/Mbio.01175-18 |
0.378 |
|
| 2018 |
Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP. Deciphering microbial interactions in synthetic human gut microbiome communities. Molecular Systems Biology. 14: e8157. PMID 29930200 DOI: 10.15252/Msb.20178157 |
0.598 |
|
| 2018 |
Gao J, Sasse J, Lewald KM, Zhalnina K, Cornmesser LT, Duncombe TA, Yoshikuni Y, Vogel JP, Firestone MK, Northen TR. Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions. Journal of Visualized Experiments : Jove. PMID 29708529 DOI: 10.3791/57170 |
0.349 |
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| 2018 |
Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology. PMID 29556109 DOI: 10.1038/S41564-018-0129-3 |
0.624 |
|
| 2018 |
Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, ... ... Northen TR, et al. An integrated workflow for phenazine-modifying enzyme characterization. Journal of Industrial Microbiology & Biotechnology. PMID 29546662 DOI: 10.1007/S10295-018-2025-5 |
0.65 |
|
| 2018 |
Karaoz U, Couradeau E, da Rocha UN, Lim HC, Northen T, Garcia-Pichel F, Brodie EL. Large Blooms of() Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity. Mbio. 9. PMID 29511079 DOI: 10.1128/Mbio.01366-16 |
0.311 |
|
| 2018 |
Swenson TL, Karaoz U, Swenson JM, Bowen BP, Northen TR. Linking soil biology and chemistry in biological soil crust using isolate exometabolomics. Nature Communications. 9: 19. PMID 29296020 DOI: 10.1038/S41467-017-02356-9 |
0.633 |
|
| 2018 |
Jose NA, Lau R, Swenson TL, Klitgord N, Garcia-Pichel F, Bowen BP, Baran R, Northen TR. Flux balance modeling to predict bacterial survival during pulsed-activity events Biogeosciences. 15: 2219-2229. DOI: 10.5194/Bg-15-2219-2018 |
0.637 |
|
| 2018 |
Couradeau E, Felde VJMNL, Parkinson D, Uteau D, Rochet A, Cuellar C, Winegar G, Peth S, Northen TR, Garcia-Pichel F. In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation Frontiers in Environmental Science. 6. DOI: 10.3389/Fenvs.2018.00065 |
0.302 |
|
| 2017 |
Jenkins S, Swenson TL, Lau R, Rocha AM, Aaring A, Hazen TC, Chakraborty R, Northen TR. Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites. Frontiers in Microbiology. 8: 2618. PMID 29312276 DOI: 10.3389/Fmicb.2017.02618 |
0.418 |
|
| 2017 |
Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, et al. Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris. Mbio. 8. PMID 29138306 DOI: 10.1128/Mbio.01780-17 |
0.608 |
|
| 2017 |
Sasse J, Martinoia E, Northen T. Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends in Plant Science. 23: 25-41. PMID 29050989 DOI: 10.1016/J.Tplants.2017.09.003 |
0.303 |
|
| 2017 |
Lubbe A, Bowen BP, Northen T. Exometabolomic Analysis of Cross-Feeding Metabolites. Metabolites. 7. PMID 28976938 DOI: 10.3390/Metabo7040050 |
0.629 |
|
| 2017 |
Eudes A, Dutta T, Deng K, Jacquet N, Sinha A, Benites VT, Baidoo EEK, Richel A, Sattler SE, Northen TR, Singh S, Simmons BA, Loqué D. SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum. Plos One. 12: e0178160. PMID 28594846 DOI: 10.1371/Journal.Pone.0178160 |
0.511 |
|
| 2017 |
Gao J, Louie KB, Steinke P, Bowen BP, Raad M, Zuckermann RN, Siuzdak G, Northen TR. Morphology Driven Control of Metabolite Selectivity using Nanostructure-initiator Mass Spectrometry. Analytical Chemistry. PMID 28520405 DOI: 10.1021/Acs.Analchem.7B00599 |
0.591 |
|
| 2017 |
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, ... ... Northen TR, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859 |
0.58 |
|
| 2017 |
Xiong Y, Wu VW, Lubbe A, Qin L, Deng S, Kennedy M, Bauer D, Singan VR, Barry K, Northen TR, Grigoriev IV, Glass NL. A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. Plos Genetics. 13: e1006737. PMID 28467421 DOI: 10.1371/Journal.Pgen.1006737 |
0.328 |
|
| 2017 |
Raad M, de Rond T, Rübel O, Keasling JD, Northen TR, Bowen BP. OpenMSI Arrayed Analysis Toolkit: Analyzing spatially defined samples using mass spectrometry imaging. Analytical Chemistry. PMID 28467051 DOI: 10.1021/Acs.Analchem.6B05004 |
0.619 |
|
| 2017 |
Walker JA, Pattathil S, Bergeman LF, Beebe ET, Deng K, Mirzai M, Northen TR, Hahn MG, Fox BG. Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling. Biotechnology For Biofuels. 10: 31. PMID 28184246 DOI: 10.1186/S13068-017-0703-6 |
0.559 |
|
| 2017 |
Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. Bmc Bioinformatics. 18: 57. PMID 28114881 DOI: 10.1186/S12859-017-1478-2 |
0.614 |
|
| 2017 |
Baran R, Lau R, Bowen BP, Diamond S, Jose N, Garcia-Pichel F, Northen TR. Extensive turnover of compatible solutes in cyanobacteria revealed by deuterium oxide (D2O) stable isotope probing. Acs Chemical Biology. PMID 28068058 DOI: 10.1021/Acschembio.6B00890 |
0.64 |
|
| 2017 |
Swenson TL, Couradeau E, Bowen BP, De Philippis R, Rossi F, Mugnai G, Northen TR. A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix Plant and Soil. 429: 53-64. DOI: 10.1007/S11104-017-3537-X |
0.586 |
|
| 2016 |
Heinemann J, Deng K, Shih SC, Gao J, Adams PD, Singh AK, Northen TR. On-chip integration of droplet microfluidics and nanostructure-initiator mass spectrometry for enzyme screening. Lab On a Chip. PMID 27957569 DOI: 10.1039/C6Lc01182A |
0.678 |
|
| 2016 |
Butterfield CN, Li Z, Andeer PF, Spaulding S, Thomas BC, Singh A, Hettich RL, Suttle KB, Probst AJ, Tringe SG, Northen T, Pan C, Banfield JF. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. Peerj. 4: e2687. PMID 27843720 DOI: 10.7717/Peerj.2687 |
0.369 |
|
| 2016 |
Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D. A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature Communications. 7: 13215. PMID 27782150 DOI: 10.1038/Ncomms13215 |
0.603 |
|
| 2016 |
Hiras J, Wu YW, Deng K, Nicora CD, Aldrich JT, Frey D, Kolinko S, Robinson EW, Jacobs JM, Adams PD, Northen TR, Simmons BA, Singer SW. Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis. Mbio. 7. PMID 27555310 DOI: 10.1128/Mbio.01106-16 |
0.657 |
|
| 2016 |
Yuzawa S, Deng K, Wang G, Baidoo EE, Northen TR, Adams PD, Katz L, Keasling JD. Comprehensive In Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production. Acs Synthetic Biology. PMID 27548700 DOI: 10.1021/Acssynbio.6B00176 |
0.625 |
|
| 2016 |
Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, ... ... Northen T, et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nature Biotechnology. 34: 828-837. PMID 27504778 DOI: 10.1038/Nbt.3597 |
0.337 |
|
| 2016 |
Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Frontiers in Microbiology. 7: 525. PMID 27148214 DOI: 10.3389/Fmicb.2016.00525 |
0.611 |
|
| 2016 |
Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Frontiers in Microbiology. 7: 323. PMID 27014243 DOI: 10.3389/Fmicb.2016.00323 |
0.609 |
|
| 2016 |
Kosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, Singh AK, Arkin AP, Deutschbauer AM, Northen TR. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. Acs Synthetic Biology. PMID 26885935 DOI: 10.1021/Acssynbio.5B00236 |
0.353 |
|
| 2016 |
Couradeau E, Karaoz U, Lim HC, Nunes da Rocha U, Northen T, Brodie E, Garcia-Pichel F. Bacteria increase arid-land soil surface temperature through the production of sunscreens. Nature Communications. 7: 10373. PMID 26785770 DOI: 10.1038/Ncomms10373 |
0.313 |
|
| 2016 |
Gao J, Raad M, Bowen BP, Zuckermann RN, Northen TR. The Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry. Analytical Chemistry. PMID 26741735 DOI: 10.1021/Acs.Analchem.5B03452 |
0.589 |
|
| 2016 |
de Raad M, Fischer CR, Northen TR. High-throughput platforms for metabolomics. Current Opinion in Chemical Biology. 30: 7-13. PMID 26544850 DOI: 10.1016/J.Cbpa.2015.10.012 |
0.376 |
|
| 2015 |
Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, ... ... Northen T, et al. Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae. Nature Plants. 1: 15107. PMID 27250540 DOI: 10.1038/Nplants.2015.107 |
0.586 |
|
| 2015 |
Walker JA, Takasuka TE, Deng K, Bianchetti CM, Udell HS, Prom BM, Kim H, Adams PD, Northen TR, Fox BG. Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules. Biotechnology For Biofuels. 8: 220. PMID 26697109 DOI: 10.1186/S13068-015-0402-0 |
0.642 |
|
| 2015 |
Deng K, Takasuka TE, Bianchetti CM, Bergeman LF, Adams PD, Northen TR, Fox BG. Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases. Frontiers in Bioengineering and Biotechnology. 3: 165. PMID 26579511 DOI: 10.3389/Fbioe.2015.00165 |
0.671 |
|
| 2015 |
Deng K, Guenther JM, Gao J, Bowen BP, Tran H, Reyes-Ortiz V, Cheng X, Sathitsuksanoh N, Heins R, Takasuka TE, Bergeman LF, Geertz-Hansen H, Deutsch S, Loqué D, Sale KL, ... ... Northen TR, et al. Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Frontiers in Bioengineering and Biotechnology. 3: 153. PMID 26528471 DOI: 10.3389/Fbioe.2015.00153 |
0.758 |
|
| 2015 |
Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nature Communications. 6: 8289. PMID 26392107 DOI: 10.1038/Ncomms9289 |
0.631 |
|
| 2015 |
Yao Y, Sun T, Wang T, Ruebel O, Northen T, Bowen BP. Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases. Metabolites. 5: 431-42. PMID 26287255 DOI: 10.3390/Metabo5030431 |
0.626 |
|
| 2015 |
Ceja-Navarro JA, Vega FE, Karaoz U, Hao Z, Jenkins S, Lim HC, Kosina P, Infante F, Northen TR, Brodie EL. Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee. Nature Communications. 6: 7618. PMID 26173063 DOI: 10.1038/Ncomms8618 |
0.319 |
|
| 2015 |
Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology. 6: 277. PMID 25926821 DOI: 10.3389/Fmicb.2015.00277 |
0.615 |
|
| 2015 |
Miquel S, Leclerc M, Martin R, Chain F, Lenoir M, Raguideau S, Hudault S, Bridonneau C, Northen T, Bowen B, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P. Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii. Mbio. 6. PMID 25900655 DOI: 10.1128/Mbio.00300-15 |
0.575 |
|
| 2015 |
Silva LP, Northen TR. Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment. Current Opinion in Biotechnology. 34: 209-216. PMID 25855407 DOI: 10.1016/J.Copbio.2015.03.015 |
0.356 |
|
| 2015 |
Castellanos-Martín A, Castillo-Lluva S, Sáez-Freire Mdel M, Blanco-Gómez A, Hontecillas-Prieto L, Patino-Alonso C, Galindo-Villardon P, Pérez Del Villar L, Martín-Seisdedos C, Isidoro-Garcia M, Abad-Hernández Mdel M, Cruz-Hernández JJ, Rodríguez-Sánchez CA, González-Sarmiento R, Alonso-López D, ... ... Northen T, et al. Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach. Genome Biology. 16: 40. PMID 25853295 DOI: 10.1186/S13059-015-0599-Z |
0.539 |
|
| 2015 |
Kurczy ME, Northen TR, Trauger SA, Siuzdak G. Nanostructure imaging mass spectrometry: the role of fluorocarbons in metabolite analysis and yoctomole level sensitivity. Methods in Molecular Biology (Clifton, N.J.). 1203: 141-9. PMID 25361674 DOI: 10.1007/978-1-4939-1357-2_14 |
0.325 |
|
| 2015 |
de Rond T, Danielewicz M, Northen T. High throughput screening of enzyme activity with mass spectrometry imaging Current Opinion in Biotechnology. 31: 1-9. PMID 25129648 DOI: 10.1016/J.Copbio.2014.07.008 |
0.404 |
|
| 2015 |
Swenson TL, Bowen BP, Nico PS, Northen TR. Competitive sorption of microbial metabolites on an iron oxide mineral Soil Biology and Biochemistry. 90: 34-41. DOI: 10.1016/J.Soilbio.2015.07.022 |
0.635 |
|
| 2015 |
Swenson TL, Jenkins S, Bowen BP, Northen TR. Untargeted soil metabolomics methods for analysis of extractable organic matter Soil Biology and Biochemistry. 80: 189-198. DOI: 10.1016/J.Soilbio.2014.10.007 |
0.637 |
|
| 2014 |
Louie KB, Northen TR. Metabolic imaging using nanostructure-initiator mass spectrometry (NIMS). Methods in Molecular Biology (Clifton, N.J.). 1198: 313-29. PMID 25270939 DOI: 10.1007/978-1-4939-1258-2_21 |
0.342 |
|
| 2014 |
Berleman JE, Allen S, Danielewicz MA, Remis JP, Gorur A, Cunha J, Hadi MZ, Zusman DR, Northen TR, Witkowska HE, Auer M. The lethal cargo of Myxococcus xanthus outer membrane vesicles. Frontiers in Microbiology. 5: 474. PMID 25250022 DOI: 10.3389/Fmicb.2014.00474 |
0.313 |
|
| 2014 |
Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, ... ... Northen TR, et al. Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry. Acs Chemical Biology. 9: 2082-91. PMID 24984213 DOI: 10.1021/Cb500244V |
0.758 |
|
| 2014 |
Deng K, Takasuka TE, Heins R, Cheng X, Bergeman LF, Shi J, Aschenbrener R, Deutsch S, Singh S, Sale KL, Simmons BA, Adams PD, Singh AK, Fox BG, Northen TR. Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS). Acs Chemical Biology. 9: 1470-9. PMID 24819174 DOI: 10.1021/Cb5000289 |
0.701 |
|
| 2014 |
Vandehey NT, Northen TR, Brodie EL, O'Neil JP. Noninvasive Mapping of Photosynthetic Heterogeneity in Biological Soil Crusts by Positron Emission Tomography: Carbon Fixation Environmental Science and Technology Letters. 1: 393-398. DOI: 10.1021/Ez500209C |
0.3 |
|
| 2014 |
Miquel S, Leclerc M, Martin R, Hudault S, Bridonneau C, Raguideau S, Northen T, Bowen BP, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P. Tu1746 Faecalibacterium prausnitzii Provides Host Beneficial Metabolic Profile During Inflammation Gastroenterology. 146: S-832. DOI: 10.1016/S0016-5085(14)63022-5 |
0.593 |
|
| 2013 |
Cheng X, Hiras J, Deng K, Bowen B, Simmons BA, Adams PD, Singer SW, Northen TR. High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production. Frontiers in Microbiology. 4: 365. PMID 24367356 DOI: 10.3389/Fmicb.2013.00365 |
0.757 |
|
| 2013 |
Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Analytical Chemistry. 85: 10856-62. PMID 24111681 DOI: 10.1021/Ac402240Q |
0.646 |
|
| 2013 |
Rübel O, Greiner A, Cholia S, Louie K, Bethel EW, Northen TR, Bowen BP. OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical Chemistry. 85: 10354-61. PMID 24087878 DOI: 10.1021/Ac402540A |
0.59 |
|
| 2013 |
Baran R, Ivanova NN, Jose N, Garcia-Pichel F, Kyrpides NC, Gugger M, Northen TR. Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics. Marine Drugs. 11: 3617-31. PMID 24084783 DOI: 10.3390/Md11103617 |
0.419 |
|
| 2013 |
Baran R, Northen TR. Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming. Analytical Chemistry. 85: 9777-84. PMID 24032353 DOI: 10.1021/Ac402180C |
0.335 |
|
| 2013 |
Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The Isme Journal. 7: 2178-91. PMID 23739051 DOI: 10.1038/Ismej.2013.83 |
0.606 |
|
| 2013 |
Fischer CR, Bowen BP, Pan C, Northen TR, Banfield JF. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. Acs Chemical Biology. 8: 1755-63. PMID 23713674 DOI: 10.1021/Cb400210Q |
0.61 |
|
| 2013 |
Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao JH, Hellerstein M, Northen TR. Mass spectrometry imaging for in situ kinetic histochemistry. Scientific Reports. 3: 1656. PMID 23584513 DOI: 10.1038/Srep01656 |
0.619 |
|
| 2013 |
McAndrew RP, Park JI, Heins RA, Reindl W, Friedland GD, D'haeseleer P, Northen T, Sale KL, Simmons BA, Adams PD. From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis. The Journal of Biological Chemistry. 288: 14985-92. PMID 23580647 DOI: 10.1074/Jbc.M113.458356 |
0.55 |
|
| 2013 |
de Rond T, Peralta-Yahya P, Cheng X, Northen TR, Keasling JD. Versatile synthesis of probes for high-throughput enzyme activity screening. Analytical and Bioanalytical Chemistry. 405: 4969-73. PMID 23568610 DOI: 10.1007/S00216-013-6888-Z |
0.394 |
|
| 2013 |
Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. Mbio. 4: e00484-12. PMID 23481603 DOI: 10.1128/Mbio.00484-12 |
0.659 |
|
| 2013 |
Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. Acs Chemical Biology. 8: 189-99. PMID 23082955 DOI: 10.1021/Cb300477W |
0.651 |
|
| 2012 |
Lee do Y, Bowen BP, Nguyen DH, Parsa S, Huang Y, Mao JH, Northen TR. Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population. Radiation Research. 178: 551-5. PMID 23051006 DOI: 10.1667/Rr2990.1 |
0.589 |
|
| 2012 |
Greving M, Cheng X, Reindl W, Bowen B, Deng K, Louie K, Nyman M, Cohen J, Singh A, Simmons B, Adams P, Siuzdak G, Northen T. Acoustic deposition with NIMS as a high-throughput enzyme activity assay. Analytical and Bioanalytical Chemistry. 403: 707-11. PMID 22407334 DOI: 10.1007/S00216-012-5908-8 |
0.766 |
|
| 2012 |
Deng K, George KW, Reindl W, Keasling JD, Adams PD, Lee TS, Singh AK, Northen TR. Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme. Rapid Communications in Mass Spectrometry : Rcm. 26: 611-5. PMID 22328213 DOI: 10.1002/Rcm.6134 |
0.683 |
|
| 2012 |
Fischer CR, Wilmes P, Bowen BP, Northen TR, Banfield JF. Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities Metabolomics. 8: 566-578. DOI: 10.1007/S11306-011-0344-X |
0.628 |
|
| 2012 |
Reindl W, Deng K, Cheng X, Singh AK, Simmons BA, Adams PD, Northen TR. Nanostructure‐Initiator Mass Spectrometry (NIMS) for the Analysis of Enzyme Activities Current Protocols in Chemical Biology. 4: 123-142. DOI: 10.1002/9780470559277.Ch110221 |
0.392 |
|
| 2011 |
Baran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Molecular Biosystems. 7: 3200-6. PMID 21935552 DOI: 10.1039/C1Mb05196B |
0.635 |
|
| 2011 |
Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Improved genome annotation through untargeted detection of pathway-specific metabolites. Bmc Genomics. 12: S6. PMID 21810208 DOI: 10.1186/1471-2164-12-S1-S6 |
0.641 |
|
| 2011 |
Reindl W, Bowen BP, Balamotis MA, Green JE, Northen TR. Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 460-7. PMID 21212877 DOI: 10.1039/C0Ib00091D |
0.564 |
|
| 2011 |
Patti GJ, Tautenhahn R, Fonslow BR, Cho Y, Deutschbauer A, Arkin A, Northen T, Siuzdak G. Meta-analysis of global metabolomics and proteomics data to link alterations with phenotype Spectroscopy. 26: 151-154. DOI: 10.3233/Spe-2011-0534 |
0.369 |
|
| 2011 |
Reindl W, Deng K, Gladden JM, Cheng G, Wong A, Singer SW, Singh S, Lee JC, Yao CH, Hazen TC, Singh AK, Simmons BA, Adams PD, Northen TR. Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities Energy and Environmental Science. 4: 2884-2891. DOI: 10.1039/C1Ee01112J |
0.381 |
|
| 2010 |
Wilmes P, Bowen BP, Thomas BC, Mueller RS, Denef VJ, VerBerkmoes NC, Hettich RL, Northen TR, Banfield JF. Metabolome-proteome differentiation coupled to microbial divergence. Mbio. 1. PMID 20978538 DOI: 10.1128/Mbio.00246-10 |
0.627 |
|
| 2010 |
Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Analytical Chemistry. 82: 9034-42. PMID 20945921 DOI: 10.1021/Ac1020112 |
0.647 |
|
| 2010 |
Lee DY, Bowen BP, Northen TR. Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. Biotechniques. 49: 557-65. PMID 20701590 DOI: 10.2144/000113451 |
0.641 |
|
| 2010 |
Facciotti MT, Pang WL, Lo FY, Whitehead K, Koide T, Masumura K, Pan M, Kaur A, Larsen DJ, Reiss DJ, Hoang L, Kalisiak E, Northen T, Trauger SA, Siuzdak G, et al. Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis. Bmc Systems Biology. 4: 64. PMID 20470417 DOI: 10.1186/1752-0509-4-64 |
0.304 |
|
| 2010 |
Bowen BP, Northen TR. Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society For Mass Spectrometry. 21: 1471-6. PMID 20452782 DOI: 10.1016/J.Jasms.2010.04.003 |
0.659 |
|
| 2010 |
Reindl W, Northen TR. Rapid screening of fatty acids using nanostructure-initiator mass spectrometry. Analytical Chemistry. 82: 3751-5. PMID 20356051 DOI: 10.1021/Ac100159Y |
0.334 |
|
| 2009 |
Baran R, Reindl W, Northen TR. Mass spectrometry based metabolomics and enzymatic assays for functional genomics. Current Opinion in Microbiology. 12: 547-52. PMID 19695948 DOI: 10.1016/J.Mib.2009.07.004 |
0.426 |
|
| 2009 |
Woo HK, Go EP, Hoang L, Trauger SA, Bowen B, Siuzdak G, Northen TR. Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 23: 1849-55. PMID 19449318 DOI: 10.1002/Rcm.4076 |
0.628 |
|
| 2009 |
Yanes O, Woo HK, Northen TR, Oppenheimer SR, Shriver L, Apon J, Estrada MN, Potchoiba MJ, Steenwyk R, Manchester M, Siuzdak G. Nanostructure initiator mass spectrometry: tissue imaging and direct biofluid analysis. Analytical Chemistry. 81: 2969-75. PMID 19301920 DOI: 10.1021/Ac802576Q |
0.343 |
|
| 2008 |
Woo HK, Northen TR, Yanes O, Siuzdak G. Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis. Nature Protocols. 3: 1341-9. PMID 18714302 DOI: 10.1038/Nprot.2008.110 |
0.336 |
|
| 2008 |
Northen TR, Lee JC, Hoang L, Raymond J, Hwang DR, Yannone SM, Wong CH, Siuzdak G. A nanostructure-initiator mass spectrometry-based enzyme activity assay. Proceedings of the National Academy of Sciences of the United States of America. 105: 3678-83. PMID 18319341 DOI: 10.1073/Pnas.0712332105 |
0.408 |
|
| 2008 |
Nordström A, Want E, Northen T, Lehtiö J, Siuzdak G. Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics. Analytical Chemistry. 80: 421-9. PMID 18085752 DOI: 10.1021/Ac701982E |
0.327 |
|
| 2008 |
Northen TR, Greving MP, Woodbury NW. Combinatorial screening of biomimetic protein affinity materials Advanced Materials. 20: 4691-4697. DOI: 10.1002/Adma.200800567 |
0.545 |
|
| 2007 |
Northen TR, Yanes O, Northen MT, Marrinucci D, Uritboonthai W, Apon J, Golledge SL, Nordström A, Siuzdak G. Clathrate nanostructures for mass spectrometry. Nature. 449: 1033-6. PMID 17960240 DOI: 10.1038/Nature06195 |
0.343 |
|
| 2006 |
Northen TR, Brune DC, Woodbury NW. Synthesis and characterization of peptide grafted porous polymer microstructures. Biomacromolecules. 7: 750-4. PMID 16529410 DOI: 10.1021/Bm0506952 |
0.545 |
|
| 2005 |
Northen TR, Woodbury NW. Light-directed movement of polymer microstructures. Langmuir : the Acs Journal of Surfaces and Colloids. 21: 4949-53. PMID 15896035 DOI: 10.1021/La047566B |
0.532 |
|
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