Kristen Marie DeAngelis - Publications

Affiliations: 
2006 University of Massachusetts, Amherst, Amherst, MA 
Area:
microbiology
Website:
https://www.micro.umass.edu/deangelis/

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Roy Chowdhury P, Golas SM, Alteio LV, Stevens JTE, Billings AF, Blanchard JL, Melillo JM, DeAngelis KM. The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest. Frontiers in Microbiology. 12: 666558. PMID 34512564 DOI: 10.3389/fmicb.2021.666558  1
2020 Morrow MA, Pold G, DeAngelis KM. Draft Genome Sequence of a Terrestrial Planctomycete, sp. Strain GP187, Isolated from Forest Soil. Microbiology Resource Announcements. 9. PMID 33303655 DOI: 10.1128/MRA.00956-20  1
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... DeAngelis KM, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2  1
2020 DeAngelis KM, Pold G. Genome Sequences of sp. Strain MT45 and sp. Strain GAS493, Two Actinobacteria Isolated from Forest Soil. Microbiology Resource Announcements. 9. PMID 32943557 DOI: 10.1128/MRA.00614-20  1
2020 Chaput G, Billings AF, DeDiego L, Orellana R, Adkins JN, Nicora CD, Kim YM, Chu R, Simmons B, DeAngelis KM. Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1. Plos One. 15: e0233823. PMID 32941430 DOI: 10.1371/Journal.Pone.0233823  1
2020 Domeignoz-Horta LA, Pold G, Liu XA, Frey SD, Melillo JM, DeAngelis KM. Microbial diversity drives carbon use efficiency in a model soil. Nature Communications. 11: 3684. PMID 32703952 DOI: 10.1038/S41467-020-17502-Z  1
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... DeAngelis KM, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X  1
2020 Pold G, Domeignoz-Horta LA, Morrison EW, Frey SD, Sistla SA, DeAngelis KM. Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria. Mbio. 11. PMID 31964725 DOI: 10.1128/Mbio.02293-19  1
2019 Steen AD, Crits-Christoph A, Carini P, DeAngelis KM, Fierer N, Lloyd KG, Cameron Thrash J. High proportions of bacteria and archaea across most biomes remain uncultured. The Isme Journal. PMID 31388130 DOI: 10.1038/S41396-019-0484-Y  0.01
2019 Chaput G, Ford J, DeDiego L, Narayanan A, Tam WY, Whalen M, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Chen IM, Stamatis D, ... ... DeAngelis K, et al. Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source. Microbiology Resource Announcements. 8. PMID 31048387 DOI: 10.1128/MRA.00409-19  1
2019 Domeignoz-Horta LA, DeAngelis KM, Pold G. Draft Genome Sequence of Group 1 sp. Strain EB88, Isolated from Forest Soil. Microbiology Resource Announcements. 8. PMID 30637399 DOI: 10.1128/MRA.01464-18  1
2019 Pold G, Sistla SA, DeAngelis KM. Metabolic tradeoffs and heterogeneity in microbial responses to temperature determine the fate of litter carbon in a warmer world Biogeosciences Discussions. 1-25. DOI: 10.5194/Bg-2019-269  1
2019 Pold G, Sistla SA, DeAngelis KM. Metabolic tradeoffs and heterogeneity in microbial responses to temperature determine the fate of litter carbon in simulations of a warmer world Biogeosciences. 16: 4875-4888. DOI: 10.5194/Bg-16-4875-2019  0.01
2018 Pold G, Huntemann M, Pillay M, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Kyrpides N, Woyke T, DeAngelis KM. Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil. Genome Announcements. 6. PMID 29437089 DOI: 10.1128/Genomea.01452-17  1
2018 Pold G, Conlon EM, Huntemann M, Pillay M, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Kyrpides N, Woyke T, DeAngelis KM. Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil. Genome Announcements. 6. PMID 29371348 DOI: 10.1128/Genomea.01451-17  1
2017 Orellana R, Chaput G, Markillie LM, Mitchell H, Gaffrey M, Orr G, DeAngelis KM. Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium. Plos One. 12: e0186440. PMID 29049419 DOI: 10.1371/Journal.Pone.0186440  1
2017 Bailey VL, Bond-Lamberty B, DeAngelis K, Grandy AS, Hawkes CV, Heckman K, Lajtha K, Phillips RP, Sulman BN, Todd-Brown KEO, Wallenstein MD. Soil carbon cycling proxies: Understanding their critical role in predicting climate change feedbacks. Global Change Biology. PMID 28991399 DOI: 10.1111/Gcb.13926  1
2017 Melillo JM, Frey SD, DeAngelis KM, Werner WJ, Bernard MJ, Bowles FP, Pold G, Knorr MA, Grandy AS. Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world. Science (New York, N.Y.). 358: 101-105. PMID 28983050 DOI: 10.1126/Science.Aan2874  1
2017 Jiménez DJ, Dini-Andreote F, DeAngelis KM, Singer SW, Salles JF, van Elsas JD. Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia. Trends in Microbiology. PMID 28648267 DOI: 10.1016/J.Tim.2017.05.012  0.08
2017 Woo HL, DeAngelis KM, Teshima H, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Munk C, Scholz M, Xu Y, Chain P, Bruce D, Detter C, et al. High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp. Genome Announcements. 5. PMID 28473393 DOI: 10.1128/Genomea.00300-17  1
2017 Pold G, Grandy AS, Melillo JM, DeAngelis KM. Changes in substrate availability drive carbon cycle response to chronic warming Soil Biology and Biochemistry. 110: 68-78. DOI: 10.1016/J.Soilbio.2017.03.002  0.01
2016 Pold G, Billings AF, Blanchard JL, Burkhardt DB, Frey SD, Melillo JM, Schnabel J, van Diepen LT, DeAngelis KM. Long-term warming alters carbohydrate degradation potential in temperate forest soils. Applied and Environmental Microbiology. PMID 27590813 DOI: 10.1128/Aem.02012-16  1
2016 DeAngelis KM. Chemical communication connects soil food webs Soil Biology and Biochemistry. 102: 48-51. DOI: 10.1016/J.Soilbio.2016.06.024  0.01
2016 Hall SJ, Liptzin D, Buss HL, DeAngelis K, Silver WL. Drivers and patterns of iron redox cycling from surface to bedrock in a deep tropical forest soil: a new conceptual model Biogeochemistry. 130: 177-190. DOI: 10.1007/S10533-016-0251-3  0.04
2015 Billings AF, Fortney JL, Hazen TC, Simmons B, Davenport KW, Goodwin L, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, DeAngelis KM. Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov. Standards in Genomic Sciences. 10: 106. PMID 26594307 DOI: 10.1186/S40793-015-0100-3  0.4
2015 Pold G, Melillo JM, DeAngelis KM. Two decades of warming increases diversity of a potentially lignolytic bacterial community. Frontiers in Microbiology. 6: 480. PMID 26042112 DOI: 10.3389/Fmicb.2015.00480  1
2015 DeAngelis KM, Pold G, Topçuo?lu BD, van Diepen LT, Varney RM, Blanchard JL, Melillo J, Frey SD. Long-term forest soil warming alters microbial communities in temperate forest soils. Frontiers in Microbiology. 6: 104. PMID 25762989 DOI: 10.3389/Fmicb.2015.00104  1
2014 Woo HL, Ballor NR, Hazen TC, Fortney JL, Simmons B, Davenport KW, Goodwin L, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, Jansson J, Kimbrel J, DeAngelis KM. Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2. Standards in Genomic Sciences. 9: 19. PMID 25566348 DOI: 10.1186/1944-3277-9-19  1
2014 Woo HL, Utturkar S, Klingeman D, Simmons BA, DeAngelis KM, Brown SD, Hazen TC. Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil. Genome Announcements. 2. PMID 24948777 DOI: 10.1128/Genomea.00637-14  1
2014 Woo HL, Hazen TC, Simmons BA, DeAngelis KM. Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. Systematic and Applied Microbiology. 37: 60-7. PMID 24238986 DOI: 10.1016/J.Syapm.2013.10.001  1
2013 Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT, Robinson EW. Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1. Frontiers in Microbiology. 4: 280. PMID 24065962 DOI: 10.3389/Fmicb.2013.00280  1
2013 Pold G, DeAngelis KM. Up against the wall: The effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle Diversity. 5: 409-425. DOI: 10.3390/D5020409  1
2013 DeAngelis KM, Chivian D, Fortney JL, Arkin AP, Simmons B, Hazen TC, Silver WL. Changes in microbial dynamics during long-term decomposition in tropical forests Soil Biology and Biochemistry. 66: 60-68. DOI: 10.1016/J.Soilbio.2013.06.010  1
2013 Deangelis KM. Rhizosphere Microbial Communication in Soil Nutrient Acquisition Molecular Microbial Ecology of the Rhizosphere. 2: 823-832. DOI: 10.1002/9781118297674.ch78  1
2012 Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP. Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus. Proceedings of the National Academy of Sciences of the United States of America. 109: E2173-82. PMID 22586090 DOI: 10.1073/Pnas.1112750109  1
2012 DeAngelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC. Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia. Mbio. 3. PMID 22354956 DOI: 10.1128/Mbio.00249-11  1
2012 DeAngelis KM, Firestone MK. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes. Applied and Environmental Microbiology. 78: 2459-61. PMID 22286992 DOI: 10.1128/Aem.07547-11  1
2012 Borglin S, Joyner D, DeAngelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T. Application of phenotypic microarrays to environmental microbiology. Current Opinion in Biotechnology. 23: 41-8. PMID 22217654 DOI: 10.1016/J.Copbio.2011.12.006  1
2011 Deangelis KM, D'Haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport KW, Goodwin L, Chen A, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, et al. Complete genome sequence of "Enterobacter lignolyticus" SCF1. Standards in Genomic Sciences. 5: 69-85. PMID 22180812 DOI: 10.4056/Sigs.2104875  1
2011 Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature. 480: 368-71. PMID 22056985 DOI: 10.1038/Nature10576  1
2011 DeAngelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Applied and Environmental Microbiology. 77: 6313-22. PMID 21764955 DOI: 10.1128/Aem.05262-11  1
2011 Shi S, Richardson AE, O'Callaghan M, DeAngelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. Effects of selected root exudate components on soil bacterial communities. Fems Microbiology Ecology. 77: 600-10. PMID 21658090 DOI: 10.1111/J.1574-6941.2011.01150.X  1
2011 DeAngelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC. Characterization of trapped lignin-degrading microbes in tropical forest soil. Plos One. 6: e19306. PMID 21559391 DOI: 10.1371/Journal.Pone.0019306  1
2010 DeAngelis KM, Silver WL, Thompson AW, Firestone MK. Microbial communities acclimate to recurring changes in soil redox potential status. Environmental Microbiology. 12: 3137-49. PMID 20629704 DOI: 10.1111/J.1462-2920.2010.02286.X  1
2010 DeAngelis KM, Gladden JM, Allgaier M, D'haeseleer P, Fortney JL, Reddy A, Hugenholtz P, Singer SW, Vander Gheynst JS, Silver WL, Simmons BA, Hazen TC. Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities Bioenergy Research. 3: 146-158. DOI: 10.1007/S12155-010-9089-Z  1
2009 Sagaram US, DeAngelis KM, Trivedi P, Andersen GL, Lu SE, Wang N. Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Applied and Environmental Microbiology. 75: 1566-74. PMID 19151177 DOI: 10.1128/Aem.02404-08  1
2009 DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. The Isme Journal. 3: 168-78. PMID 19005498 DOI: 10.1038/Ismej.2008.103  1
2008 Templer PH, Silver WL, Pett-Ridge J, M DeAngelis K, Firestone MK. PLANT AND MICROBIAL CONTROLS ON NITROGEN RETENTION AND LOSS IN A HUMID TROPICAL FOREST. Ecology. 89: 3030-3040. PMID 31766805 DOI: 10.1890/07-1631.1  0.84
2008 DeAngelis KM, Lindow SE, Firestone MK. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. Fems Microbiology Ecology. 66: 197-207. PMID 18721146 DOI: 10.1111/J.1574-6941.2008.00550.X  1
2008 Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1  1
2007 DeAngelis KM, Firestone MK, Lindow SE. Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities. Applied and Environmental Microbiology. 73: 3724-7. PMID 17400771 DOI: 10.1128/Aem.02187-06  1
2007 Hawkes CV, DeAngelis KM, Firestone MK. Root Interactions with Soil Microbial Communities and Processes The Rhizosphere. 1-29. DOI: 10.1016/B978-012088775-0/50003-3  1
2005 DeAngelis KM, Ji P, Firestone MK, Lindow SE. Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere. Applied and Environmental Microbiology. 71: 8537-47. PMID 16332845 DOI: 10.1128/Aem.71.12.8537-8547.2005  1
2000 Liu J, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM. Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Molecular Cell. 6: 637-48. PMID 11030343 DOI: 10.1016/S1097-2765(00)00062-9  1
1999 Nichols MD, DeAngelis K, Keck JL, Berger JM. Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11. The Embo Journal. 18: 6177-88. PMID 10545127 DOI: 10.1093/Emboj/18.21.6177  1
1998 Rifai N, Iannotti E, DeAngelis K, Law T. Analytical and clinical performance of a homogeneous enzymatic LDL-cholesterol assay compared with the ultracentrifugation-dextran sulfate-Mg2+ method Clinical Chemistry. 44: 1242-1250. DOI: 10.1093/Clinchem/44.6.1242  0.04
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