| Year |
Citation |
Score |
| 2024 |
Ficarro SB, Kothiwal D, Bae HJ, Tavares I, Giordano G, Buratowski S, Marto JA. Leveraging HILIC/ERLIC Separations for Online Nanoscale LC-MS/MS Analysis of Phosphopeptide Isoforms from RNA Polymerase II C-terminal Domain. Biorxiv : the Preprint Server For Biology. PMID 39416017 DOI: 10.1101/2024.10.08.617299 |
0.581 |
|
| 2024 |
Chen YE, Ge X, Woyshner K, McDermott M, Manousopoulou A, Ficarro SB, Marto JA, Li K, Wang LD, Li JJ. APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control. Genomics, Proteomics & Bioinformatics. 22. PMID 39198030 DOI: 10.1093/gpbjnl/qzae042 |
0.532 |
|
| 2024 |
Li YD, Ma MW, Hassan MM, Hunkeler M, Teng M, Puvar K, Rutter JC, Lumpkin RJ, Sandoval B, Jin CY, Schmoker AM, Ficarro SB, Cheong H, Metivier RJ, Wang MY, ... ... Marto JA, et al. Template-assisted covalent modification underlies activity of covalent molecular glues. Nature Chemical Biology. PMID 39075252 DOI: 10.1038/s41589-024-01668-4 |
0.62 |
|
| 2024 |
Zhu D, Wang Z, Zhao JJ, Calimeri T, Meng J, Hideshima T, Fulciniti M, Kang Y, Ficarro SB, Tai YT, Hunter Z, McMilin D, Tong H, Mitsiades CS, Wu CJ, ... ... Marto JA, et al. Author Correction: The Cyclophilin A-CD147 complex promotes the proliferation and homing of multiple myeloma cells. Nature Medicine. PMID 38969881 DOI: 10.1038/s41591-024-03171-8 |
0.501 |
|
| 2024 |
Li Z, Jiang J, Ficarro SB, Beyett TS, To C, Tavares I, Zhu Y, Li J, Eck MJ, Jänne PA, Marto JA, Zhang T, Che J, Gray NS. Molecular Bidents with Two Electrophilic Warheads as a New Pharmacological Modality. Acs Central Science. 10: 1156-1166. PMID 38947214 DOI: 10.1021/acscentsci.3c01245 |
0.661 |
|
| 2024 |
Siriwongsup S, Schmoker AM, Ficarro SB, Marto JA, Kim J. Bioorthogonally activated reactive species for target identification. Chem. 10: 1306-1315. PMID 38617077 DOI: 10.1016/j.chempr.2024.03.002 |
0.553 |
|
| 2024 |
Wachter F, Nowak RP, Ficarro S, Marto J, Fischer ES. Structural characterization of methylation-independent PP2A assembly guides Alphafold2Multimer prediction of family-wide PP2A complexes. The Journal of Biological Chemistry. 107268. PMID 38582449 DOI: 10.1016/j.jbc.2024.107268 |
0.549 |
|
| 2024 |
Li Z, Lu W, Beyett TS, Ficarro SB, Jiang J, Tse J, Kim AY, Marto JA, Che J, Jänne PA, Eck MJ, Zhang T, Gray NS. ZNL0325, a Pyrazolopyrimidine-Based Covalent Probe, Demonstrates an Alternative Binding Mode for Kinases. Journal of Medicinal Chemistry. PMID 38300264 DOI: 10.1021/acs.jmedchem.3c01891 |
0.632 |
|
| 2024 |
Zhu D, Wang Z, Zhao JJ, Calimeri T, Meng J, Hideshima T, Fulciniti M, Kang Y, Ficarro SB, Tai YT, Hunter Z, McMilin D, Tong H, Mitsiades CS, Wu CJ, ... ... Marto JA, et al. Author Correction: The Cyclophilin A-CD147 complex promotes the proliferation and homing of multiple myeloma cells. Nature Medicine. PMID 38273148 DOI: 10.1038/s41591-024-02820-2 |
0.501 |
|
| 2023 |
Chen H, Lye MF, Gorgulla C, Ficarro SB, Cuny GD, Scott DA, Wu F, Rothlauf PW, Wang X, Fernandez R, Pesola JM, Draga S, Marto JA, Hogle JM, Arthanari H, et al. A small molecule exerts selective antiviral activity by targeting the human cytomegalovirus nuclear egress complex. Plos Pathogens. 19: e1011781. PMID 37976321 DOI: 10.1371/journal.ppat.1011781 |
0.582 |
|
| 2023 |
Cruite JT, Nowak RP, Donovan KA, Ficarro SB, Huang H, Liu H, Liu Y, Marto JA, Metivier RJ, Fischer ES, Jones LH. Covalent Stapling of the Cereblon Sensor Loop Histidine Using Sulfur-Heterocycle Exchange. Acs Medicinal Chemistry Letters. 14: 1576-1581. PMID 37974938 DOI: 10.1021/acsmedchemlett.3c00371 |
0.543 |
|
| 2023 |
Nowak RP, Ragosta L, Huerta F, Liu H, Ficarro SB, Cruite JT, Metivier RJ, Donovan KA, Marto JA, Fischer ES, Zerfas BL, Jones LH. Development of a covalent cereblon-based PROTAC employing a fluorosulfate warhead. Rsc Chemical Biology. 4: 906-912. PMID 37920397 DOI: 10.1039/d3cb00103b |
0.54 |
|
| 2023 |
Casirati G, Cosentino A, Mucci A, Salah Mahmoud M, Ugarte Zabala I, Zeng J, Ficarro SB, Klatt D, Brendel C, Rambaldi A, Ritz J, Marto JA, Pellin D, Bauer DE, Armstrong SA, et al. Epitope editing enables targeted immunotherapy of acute myeloid leukaemia. Nature. PMID 37648862 DOI: 10.1038/s41586-023-06496-5 |
0.546 |
|
| 2023 |
Lu W, Fan M, Ji W, Tse J, You I, Ficarro SB, Tavares I, Che J, Kim AY, Zhu X, Boghossian A, Rees MG, Ronan MM, Roth JA, Hinshaw SM, ... ... Marto JA, et al. Structure-Based Design of Y-Shaped Covalent TEAD Inhibitors. Journal of Medicinal Chemistry. PMID 36946421 DOI: 10.1021/acs.jmedchem.2c01548 |
0.652 |
|
| 2023 |
Lu W, Liu Y, Gao Y, Geng Q, Gurbani D, Li L, Ficarro SB, Meyer CJ, Sinha D, You I, Tse J, He Z, Ji W, Che J, Kim AY, ... ... Marto JA, et al. Development of a Covalent Inhibitor of c-Jun N-Terminal Protein Kinase (JNK) 2/3 with Selectivity over JNK1. Journal of Medicinal Chemistry. 66: 3356-3371. PMID 36826833 DOI: 10.1021/acs.jmedchem.2c01834 |
0.666 |
|
| 2023 |
Li YD, Ma MW, Hassan MM, Hunkeler M, Teng M, Puvar K, Lumpkin R, Sandoval B, Jin CY, Ficarro SB, Wang MY, Xu S, Groendyke BJ, Sigua LH, Tavares I, ... ... Marto JA, et al. Template-assisted covalent modification of DCAF16 underlies activity of BRD4 molecular glue degraders. Biorxiv : the Preprint Server For Biology. PMID 36824856 DOI: 10.1101/2023.02.14.528208 |
0.64 |
|
| 2023 |
Chan WC, Liu X, Magin RS, Girardi NM, Ficarro SB, Hu W, Tarazona Guzman MI, Starnbach CA, Felix A, Adelmant G, Varca AC, Hu B, Bratt AS, DaSilva E, Schauer NJ, ... ... Marto JA, et al. Accelerating inhibitor discovery for deubiquitinating enzymes. Nature Communications. 14: 686. PMID 36754960 DOI: 10.1038/s41467-023-36246-0 |
0.56 |
|
| 2022 |
Fan M, Lu W, Che J, Kwiatkowski NP, Gao Y, Seo HS, Ficarro SB, Gokhale PC, Liu Y, Geffken EA, Lakhani J, Song K, Kuljanin M, Ji W, Jiang J, ... ... Marto JA, et al. Covalent disruptor of YAP-TEAD association suppresses defective hippo signaling. Elife. 11. PMID 36300789 DOI: 10.7554/eLife.78810 |
0.67 |
|
| 2022 |
Wei P, Bott AJ, Cluntun AA, Morgan JT, Cunningham CN, Schell JC, Ouyang Y, Ficarro SB, Marto JA, Danial NN, DeBerardinis RJ, Rutter J. Mitochondrial pyruvate supports lymphoma proliferation by fueling a glutamate pyruvate transaminase 2-dependent glutaminolysis pathway. Science Advances. 8: eabq0117. PMID 36179030 DOI: 10.1126/sciadv.abq0117 |
0.513 |
|
| 2022 |
Cruite JT, Dann GP, Che J, Donovan KA, Ferrao S, Ficarro SB, Fischer ES, Gray NS, Huerta F, Kong NR, Liu H, Marto JA, Metivier RJ, Nowak RP, Zerfas BL, et al. Cereblon covalent modulation through structure-based design of histidine targeting chemical probes. Rsc Chemical Biology. 3: 1105-1110. PMID 36128501 DOI: 10.1039/d2cb00078d |
0.647 |
|
| 2022 |
Zhu H, Mellors JS, Chan WC, Thompson JW, Ficarro SB, Tavares I, Bratt AS, Decker J, Krause M, Kruppa G, Buhrlage SJ, Marto JA. On-Chip Preconcentration Microchip Capillary Electrophoresis Based CE-PRM-LIVE for High-Throughput Selectivity Profiling of Deubiquitinase Inhibitors. Analytical Chemistry. PMID 35729701 DOI: 10.1021/acs.analchem.2c01337 |
0.591 |
|
| 2022 |
Ficarro SB, Max Alexander W, Tavares I, Marto JA. Open source fraction collector/MALDI spotter for proteomics. Hardwarex. 11: e00305. PMID 35518277 DOI: 10.1016/j.ohx.2022.e00305 |
0.542 |
|
| 2021 |
Ji Z, Li H, Peterle D, Paulo JA, Ficarro SB, Wales TE, Marto JA, Gygi SP, Engen JR, Rapoport TA. Translocation of polyubiquitinated protein substrates by the hexameric Cdc48 ATPase. Molecular Cell. PMID 34951965 DOI: 10.1016/j.molcel.2021.11.033 |
0.528 |
|
| 2021 |
Zhu H, Ficarro SB, Alexander WM, Fleming LE, Adelmant G, Zhang T, Willetts M, Decker J, Brehmer S, Krause M, East MP, Gray NS, Johnson GL, Kruppa G, Marto JA. PRM-LIVE with Trapped Ion Mobility Spectrometry and Its Application in Selectivity Profiling of Kinase Inhibitors. Analytical Chemistry. PMID 34606255 DOI: 10.1021/acs.analchem.1c02349 |
0.674 |
|
| 2021 |
Teng M, Jiang J, Ficarro SB, Seo HS, Bae JH, Donovan KA, Fischer ES, Zhang T, Dhe-Paganon S, Marto JA, Gray NS. Exploring Ligand-Directed -Acyl--alkylsulfonamide-Based Acylation Chemistry for Potential Targeted Degrader Development. Acs Medicinal Chemistry Letters. 12: 1302-1307. PMID 34413960 DOI: 10.1021/acsmedchemlett.1c00285 |
0.641 |
|
| 2021 |
Chan WC, Sharifzadeh S, Buhrlage SJ, Marto JA. Chemoproteomic methods for covalent drug discovery. Chemical Society Reviews. PMID 34143170 DOI: 10.1039/d1cs00231g |
0.642 |
|
| 2021 |
Chan WC, Sharifzadeh S, Buhrlage SJ, Marto JA. Chemoproteomic methods for covalent drug discovery. Chemical Society Reviews. PMID 34143170 DOI: 10.1039/d1cs00231g |
0.642 |
|
| 2021 |
Vohhodina J, Goehring LJ, Liu B, Kong Q, Botchkarev VV, Huynh M, Liu Z, Abderazzaq FO, Clark AP, Ficarro SB, Marto JA, Hatchi E, Livingston DM. BRCA1 binds TERRA RNA and suppresses R-Loop-based telomeric DNA damage. Nature Communications. 12: 3542. PMID 34112789 DOI: 10.1038/s41467-021-23716-6 |
0.502 |
|
| 2021 |
Dubiella C, Pinch BJ, Koikawa K, Zaidman D, Poon E, Manz TD, Nabet B, He S, Resnick E, Rogel A, Langer EM, Daniel CJ, Seo HS, Chen Y, Adelmant G, ... ... Marto JA, et al. Sulfopin is a covalent inhibitor of Pin1 that blocks Myc-driven tumors in vivo. Nature Chemical Biology. PMID 33972797 DOI: 10.1038/s41589-021-00786-7 |
0.797 |
|
| 2021 |
Jiang B, Jiang J, Kaltheuner IH, Iniguez AB, Anand K, Ferguson FM, Ficarro SB, Seong BKA, Greifenberg AK, Dust S, Kwiatkowski NP, Marto JA, Stegmaier K, Zhang T, Geyer M, et al. Structure-activity relationship study of THZ531 derivatives enables the discovery of BSJ-01-175 as a dual CDK12/13 covalent inhibitor with efficacy in Ewing sarcoma. European Journal of Medicinal Chemistry. 221: 113481. PMID 33945934 DOI: 10.1016/j.ejmech.2021.113481 |
0.668 |
|
| 2020 |
Hatcher JM, Yang G, Wang L, Ficarro SB, Buhrlage S, Wu H, Marto JA, Treon SP, Gray NS. Discovery of a Selective, Covalent IRAK1 Inhibitor with Antiproliferative Activity in MYD88 Mutated B-Cell Lymphoma. Acs Medicinal Chemistry Letters. 11: 2238-2243. PMID 33214835 DOI: 10.1021/acsmedchemlett.0c00378 |
0.645 |
|
| 2020 |
Jiang J, Jiang B, He Z, Ficarro SB, Che J, Marto JA, Gao Y, Zhang T, Gray NS. Discovery of Covalent MKK4/7 Dual Inhibitor. Cell Chemical Biology. PMID 32916088 DOI: 10.1016/J.Chembiol.2020.08.014 |
0.698 |
|
| 2020 |
Fu A, Alvarez-Perez JC, Avizonis D, Kin T, Ficarro SB, Choi DW, Karakose E, Badur MG, Evans L, Rosselot C, Bridon G, Bird GH, Seo HS, Dhe-Paganon S, Kamphorst JJ, ... ... Marto JA, et al. Glucose-dependent partitioning of arginine to the urea cycle protects β-cells from inflammation. Nature Metabolism. 2: 432-446. PMID 32694660 DOI: 10.1038/s42255-020-0199-4 |
0.495 |
|
| 2020 |
Teng M, Ficarro SB, Yoon H, Che J, Zhou J, Fischer ES, Marto JA, Zhang T, Gray NS. Rationally Designed Covalent BCL6 Inhibitor That Targets a Tyrosine Residue in the Homodimer Interface. Acs Medicinal Chemistry Letters. 11: 1269-1273. PMID 32551010 DOI: 10.1021/Acsmedchemlett.0C00111 |
0.695 |
|
| 2020 |
Liu Y, Hao M, Leggett A, Gao Y, Ficarro SB, Che J, He Z, Olson C, Marto JA, Kwiatkowski N, Zhang T, Gray NS. Discovery of MFH290: A Potent and Highly Selective Covalent Inhibitor for Cyclin-Dependent Kinase 12/13. Journal of Medicinal Chemistry. PMID 32502343 DOI: 10.1021/Acs.Jmedchem.9B01929 |
0.662 |
|
| 2020 |
Pinch BJ, Doctor ZM, Nabet B, Browne CM, Seo HS, Mohardt ML, Kozono S, Lian X, Manz TD, Chun Y, Kibe S, Zaidman D, Daitchman D, Yeoh ZC, Vangos NE, ... ... Marto JA, et al. Identification of a potent and selective covalent Pin1 inhibitor. Nature Chemical Biology. PMID 32483379 DOI: 10.1038/S41589-020-0550-9 |
0.806 |
|
| 2020 |
Manz TD, Sivakumaren SC, Ferguson FM, Zhang T, Yasgar A, Seo HS, Ficarro SB, Card JD, Shim H, Miduturu CV, Simeonov A, Shen M, Marto JA, Dhe-Paganon S, Hall MD, et al. Discovery and Structure-Activity Relationship Study of (Z)-5-Methylenethiazolidin-4-one Derivatives as Potent and Selective Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors. Journal of Medicinal Chemistry. PMID 32298120 DOI: 10.1021/Acs.Jmedchem.0C00227 |
0.697 |
|
| 2020 |
Schauer NJ, Liu X, Magin RS, Doherty LM, Chan WC, Ficarro SB, Hu W, Roberts RM, Iacob RE, Stolte B, Giacomelli AO, Perera S, McKay K, Boswell SA, Weisberg EL, ... ... Marto JA, et al. Selective USP7 inhibition elicits cancer cell killing through a p53-dependent mechanism. Scientific Reports. 10: 5324. PMID 32210275 DOI: 10.1038/S41598-020-62076-X |
0.623 |
|
| 2020 |
Manz TD, Sivakumaren SC, Yasgar A, Hall MD, Davis MI, Seo HS, Card JD, Ficarro SB, Shim H, Marto JA, Dhe-Paganon S, Sasaki AT, Boxer MB, Simeonov A, Cantley LC, et al. Structure-Activity Relationship Study of Covalent Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors. Acs Medicinal Chemistry Letters. 11: 346-352. PMID 32184968 DOI: 10.1021/Acsmedchemlett.9B00402 |
0.694 |
|
| 2020 |
Sivakumaren SC, Shim H, Zhang T, Ferguson FM, Lundquist MR, Browne CM, Seo HS, Paddock MN, Manz TD, Jiang B, Hao MF, Krishnan P, Wang DG, Yang TJ, Kwiatkowski NP, ... ... Marto JA, et al. Targeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors. Cell Chemical Biology. PMID 32130941 DOI: 10.1016/J.Chembiol.2020.02.003 |
0.802 |
|
| 2020 |
Adhikari AA, Seegar TCM, Ficarro SB, McCurry MD, Ramachandran D, Yao L, Chaudhari SN, Ndousse-Fetter S, Banks AS, Marto JA, Blacklow SC, Devlin AS. Development of a covalent inhibitor of gut bacterial bile salt hydrolases. Nature Chemical Biology. PMID 32042200 DOI: 10.1038/S41589-020-0467-3 |
0.582 |
|
| 2020 |
Kurppa KJ, Liu Y, To C, Zhang T, Fan M, Vajdi A, Knelson EH, Xie Y, Lim K, Cejas P, Portell A, Lizotte PH, Ficarro SB, Li S, Chen T, ... ... Marto JA, et al. Treatment-Induced Tumor Dormancy through YAP-Mediated Transcriptional Reprogramming of the Apoptotic Pathway. Cancer Cell. 37: 104-122.e12. PMID 31935369 DOI: 10.1016/J.Ccell.2019.12.006 |
0.665 |
|
| 2020 |
Du G, Rao S, Gurbani D, Henning NJ, Jiang J, Che J, Yang A, Ficarro SB, Marto JA, Aguirre AJ, Sorger PK, Westover KD, Zhang T, Gray NS. Structure-based design of a potent and selective covalent inhibitor for SRC kinase that targets a p-Loop cysteine. Journal of Medicinal Chemistry. PMID 31935084 DOI: 10.1021/Acs.Jmedchem.9B01502 |
0.694 |
|
| 2020 |
Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, et al. STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation of human cells. Elife. 9. PMID 31913126 DOI: 10.7554/Elife.53003 |
0.489 |
|
| 2020 |
Fu A, Alvarez-Perez JC, Avizonis D, Kin T, Ficarro SB, Choi DW, Karakose E, Badur MG, Evans L, Rosselot C, Bridon G, Bird GH, Seo H, Dhe-Paganon S, Kamphorst JJ, ... ... Marto JA, et al. Glucose-dependent partitioning of arginine to the urea cycle protects β-cells from inflammation Nature Metabolism. 2: 432-446. DOI: 10.1038/s42255-020-0199-4 |
0.48 |
|
| 2019 |
Jarrett SM, Seegar TCM, Andrews M, Adelmant G, Marto JA, Aster JC, Blacklow SC. Extension of the Notch intracellular domain ankyrin repeat stack by NRARP promotes feedback inhibition of Notch signaling. Science Signaling. 12. PMID 31690634 DOI: 10.1126/Scisignal.Aay2369 |
0.332 |
|
| 2019 |
Park E, Rawson S, Li K, Kim BW, Ficarro SB, Pino GG, Sharif H, Marto JA, Jeon H, Eck MJ. Architecture of autoinhibited and active BRAF-MEK1-14-3-3 complexes. Nature. PMID 31581174 DOI: 10.1038/S41586-019-1660-Y |
0.606 |
|
| 2019 |
Zheng XF, Acharya SS, Choe KN, Nikhil K, Adelmant G, Satapathy SR, Sharma S, Viccaro K, Rana S, Natarajan A, Sicinski P, Marto JA, Shah K, Chowdhury D. A mitotic CDK5-PP4 phospho-signaling cascade primes 53BP1 for DNA repair in G1. Nature Communications. 10: 4252. PMID 31534152 DOI: 10.1038/S41467-019-12084-X |
0.306 |
|
| 2019 |
Twomey EC, Ji Z, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, Rapoport TA. Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science (New York, N.Y.). PMID 31249135 DOI: 10.1126/science.aax1033 |
0.567 |
|
| 2019 |
Ferguson FM, Doctor ZM, Ficarro SB, Marto JA, Kim ND, Sim T, Gray NS. Synthesis and structure activity relationships of a series of 4-amino-1H-pyrazoles as covalent inhibitors of CDK14. Bioorganic & Medicinal Chemistry Letters. PMID 31175010 DOI: 10.1016/J.Bmcl.2019.05.024 |
0.673 |
|
| 2019 |
Rao S, Gurbani D, Du G, Everley RA, Browne CM, Chaikuad A, Li T, Schröder M, Gondi S, Ficarro SB, Sim T, Kim ND, Berberich MJ, Knapp S, Marto JA, et al. Leveraging Compound Promiscuity to Identify Targetable Cysteines within the Kinome. Cell Chemical Biology. PMID 30982749 DOI: 10.1016/J.Chembiol.2019.02.021 |
0.807 |
|
| 2019 |
Ferguson FM, Doctor ZM, Ficarro SB, Browne CM, Marto JA, Johnson JL, Yaron TM, Cantley LC, Kim ND, Sim T, Berberich MJ, Kalocsay M, Sorger PK, Gray NS. Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity. Cell Chemical Biology. PMID 30930164 DOI: 10.1016/J.Chembiol.2019.02.015 |
0.812 |
|
| 2019 |
Olson CM, Liang Y, Leggett A, Park WD, Li L, Mills CE, Elsarrag SZ, Ficarro SB, Zhang T, Düster R, Geyer M, Sim T, Marto JA, Sorger PK, Westover KD, et al. Development of a Selective CDK7 Covalent Inhibitor Reveals Predominant Cell-Cycle Phenotype. Cell Chemical Biology. PMID 30905681 DOI: 10.1016/J.Chembiol.2019.02.012 |
0.695 |
|
| 2019 |
Joo YJ, Ficarro SB, Chun Y, Marto JA, Buratowski S. In vitro analysis of RNA polymerase II elongation complex dynamics. Genes & Development. PMID 30846429 DOI: 10.1101/Gad.324202.119 |
0.599 |
|
| 2019 |
Joo YJ, Ficarro SB, Marto JA, Buratowski S. In vitro assembly and proteomic analysis of RNA polymerase II complexes. Methods (San Diego, Calif.). PMID 30844430 DOI: 10.1016/J.Ymeth.2019.03.001 |
0.577 |
|
| 2019 |
Adelmant G, Garg BK, Tavares M, Card JD, Marto JA. Tandem Affinity Purification and Mass Spectrometry (TAP-MS) for the Analysis of Protein Complexes. Current Protocols in Protein Science. e84. PMID 30706993 DOI: 10.1002/Cpps.84 |
0.357 |
|
| 2019 |
Pinch B, Doctor Z, Browne CM, Seo H, Nabet B, Kozono S, Lian X, Zaidman D, Daitchman D, London N, Gong L, Manz T, Chun Y, Tan L, Marto J, et al. Abstract 2757: Discovery and characterization of covalent Pin1 inhibitors targeted to an active site cysteine Cancer Research. 79: 2757-2757. DOI: 10.1158/1538-7445.Am2019-2757 |
0.758 |
|
| 2018 |
Browne CM, Jiang B, Ficarro SB, Doctor ZM, Johnson JL, Card JD, Sivakumaren SC, Alexander WM, Yaron T, Murphy CJ, Kwiatkowski NP, Zhang T, Cantley LC, Gray NS, Marto JA. A Chemoproteomic Strategy for Direct and Proteome-wide Covalent Inhibitor Target-site Identification. Journal of the American Chemical Society. PMID 30518210 DOI: 10.1021/Jacs.8B07911 |
0.815 |
|
| 2018 |
Chu N, Salguero AL, Liu AZ, Chen Z, Dempsey DR, Ficarro SB, Alexander WM, Marto JA, Li Y, Amzel LM, Gabelli SB, Cole PA. Akt Kinase Activation Mechanisms Revealed Using Protein Semisynthesis. Cell. PMID 30078705 DOI: 10.1016/J.Cell.2018.07.003 |
0.619 |
|
| 2018 |
de Wispelaere M, Lian W, Potisopon S, Li PC, Jang J, Ficarro SB, Clark MJ, Zhu X, Kaplan JB, Pitts JD, Wales TE, Wang J, Engen JR, Marto JA, Gray NS, et al. Inhibition of Flaviviruses by Targeting a Conserved Pocket on the Viral Envelope Protein. Cell Chemical Biology. PMID 29937406 DOI: 10.1016/J.Chembiol.2018.05.011 |
0.653 |
|
| 2018 |
Hatcher JM, Wu G, Zeng C, Zhu J, Meng F, Patel S, Wang W, Ficarro SB, Leggett AL, Powell CE, Marto JA, Zhang K, Ki Ngo JC, Fu XD, Zhang T, et al. SRPKIN-1: A Covalent SRPK1/2 Inhibitor that Potently Converts VEGF from Pro-angiogenic to Anti-angiogenic Isoform. Cell Chemical Biology. PMID 29478907 DOI: 10.1016/J.Chembiol.2018.01.013 |
0.672 |
|
| 2018 |
Brown FC, Still E, Koche RP, Yim CY, Takao S, Cifani P, Reed C, Gunasekera S, Ficarro SB, Romanienko P, Mark W, McCarthy C, de Stanchina E, Gonen M, Seshan V, ... ... Marto JA, et al. MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia. Cancer Discovery. PMID 29431698 DOI: 10.1158/2159-8290.Cd-17-1271 |
0.609 |
|
| 2017 |
Gao Y, Zhang T, Terai H, Ficarro SB, Kwiatkowski N, Hao MF, Sharma B, Christensen CL, Chipumuro E, Wong KK, Marto JA, Hammerman PS, Gray NS, George RE. Overcoming Resistance to the THZ Series of Covalent Transcriptional CDK Inhibitors. Cell Chemical Biology. PMID 29276047 DOI: 10.1016/J.Chembiol.2017.11.007 |
0.659 |
|
| 2017 |
Soltis AR, Kennedy NJ, Xin X, Zhou F, Ficarro SB, Yap YS, Matthews BJ, Lauffenburger DA, White FM, Marto JA, Davis RJ, Fraenkel E. Hepatic Dysfunction Caused by Consumption of a High-Fat Diet. Cell Reports. 21: 3317-3328. PMID 29241556 DOI: 10.1016/J.Celrep.2017.11.059 |
0.656 |
|
| 2017 |
Joo YJ, Ficarro SB, Soares LM, Chun Y, Marto JA, Buratowski S. Downstream promoter interactions of TFIID TAFs facilitate transcription reinitiation. Genes & Development. 31: 2162-2174. PMID 29203645 DOI: 10.1101/Gad.306324.117 |
0.56 |
|
| 2017 |
Cato L, Neeb A, Sharp A, Buzón V, Ficarro SB, Yang L, Muhle-Goll C, Kuznik NC, Riisnaes R, Nava Rodrigues D, Armant O, Gourain V, Adelmant G, Ntim EA, Westerling T, ... ... Marto JA, et al. Development of Bag-1L as a therapeutic target in androgen receptor-dependent prostate cancer. Elife. 6. PMID 28826504 DOI: 10.7554/Elife.27159 |
0.558 |
|
| 2017 |
Zeng M, Lu J, Li L, Feru F, Quan C, Gero TW, Ficarro SB, Xiong Y, Ambrogio C, Paranal RM, Catalano M, Shao J, Wong KK, Marto JA, Fischer ES, et al. Potent and Selective Covalent Quinazoline Inhibitors of KRAS G12C. Cell Chemical Biology. PMID 28781124 DOI: 10.1016/J.Chembiol.2017.06.017 |
0.67 |
|
| 2017 |
Ficarro SB, Alexander WM, Marto JA. mzStudio: A Dynamic Digital Canvas for User-Driven Interrogation of Mass Spectrometry Data. Proteomes. 5. PMID 28763045 DOI: 10.3390/Proteomes5030020 |
0.601 |
|
| 2017 |
Cho IT, Adelmant G, Lim Y, Marto JA, Cho G, Golden JA. Ascorbate peroxidase proximity labeling coupled with biochemical fractionation identifies promoters of endoplasmic reticulum mitochondrial contacts. The Journal of Biological Chemistry. PMID 28760823 DOI: 10.1074/Jbc.M117.795286 |
0.315 |
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| 2017 |
Zhang J, Gao X, Schmit F, Adelmant G, Eck MJ, Marto JA, Zhao JJ, Roberts TM. CRKL Mediates p110β-Dependent PI3K Signaling in PTEN-Deficient Cancer Cells. Cell Reports. 20: 549-557. PMID 28723560 DOI: 10.1016/J.Celrep.2017.06.054 |
0.391 |
|
| 2017 |
Alexander WM, Ficarro SB, Adelmant G, Marto JA. multiplierz v2.0: a Python-based ecosystem for shared access and analysis of native mass spectrometry data. Proteomics. PMID 28686798 DOI: 10.1002/Pmic.201700091 |
0.579 |
|
| 2017 |
Hsu JH, Hubbell-Engler B, Adelmant G, Huang J, Joyce CE, Vazquez F, Weir BA, Montgomery P, Tsherniak A, Giacomelli AO, Perry JA, Trowbridge J, Fujiwara Y, Cowley GS, Xie H, ... ... Marto JA, et al. Prmt1-mediated translation regulation is a crucial vulnerability of cancer. Cancer Research. PMID 28655788 DOI: 10.1158/0008-5472.Can-17-0216 |
0.351 |
|
| 2017 |
Zhou J, Tien AC, Alberta JA, Ficarro SB, Griveau A, Sun Y, Deshpande JS, Card JD, Morgan-Smith M, Michowski W, Hashizume R, James CD, Ligon KL, Snider WD, Sicinski P, ... Marto JA, et al. A Sequentially Priming Phosphorylation Cascade Activates the Gliomagenic Transcription Factor Olig2. Cell Reports. 18: 3167-3177. PMID 28355568 DOI: 10.1016/J.Celrep.2017.03.003 |
0.62 |
|
| 2017 |
Tavera-Mendoza LE, Westerling T, Libby E, Marusyk A, Cato L, Cassani R, Cameron LA, Ficarro SB, Marto JA, Klawitter J, Brown M. Vitamin D receptor regulates autophagy in the normal mammary gland and in luminal breast cancer cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28242709 DOI: 10.1073/Pnas.1615015114 |
0.546 |
|
| 2017 |
Chen H, Coseno M, Ficarro SB, Mansueto MS, Komazin-Meredith G, Boissel S, Filman DJ, Marto JA, Hogle JM, Coen DM. A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions. Acs Infectious Diseases. 3: 112-118. PMID 28183184 DOI: 10.1021/Acsinfecdis.6B00079 |
0.604 |
|
| 2017 |
Kang UB, Alexander WM, Marto JA. Interrogating the hidden phosphoproteome. Proteomics. PMID 28165663 DOI: 10.1002/Pmic.201600437 |
0.415 |
|
| 2017 |
Cato L, Neeb A, Sharp A, Buzón V, Ficarro SB, Yang L, Muhle-Goll C, Kuznik NC, Riisnaes R, Rodrigues DN, Armant O, Gourain V, Adelmant G, Ntim EA, Westerling T, ... ... Marto JA, et al. Author response: Development of Bag-1L as a therapeutic target in androgen receptor-dependent prostate cancer Elife. DOI: 10.7554/Elife.27159.041 |
0.547 |
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| 2016 |
Ficarro SB, Browne CM, Card JD, Alexander WM, Zhang T, Park E, McNally R, Dhe-Paganon S, Seo HS, Lamberto I, Eck MJ, Buhrlage SJ, Gray NS, Marto JA. Leveraging Gas-Phase Fragmentation Pathways for Improved Identification and Selective Detection of Targets Modified by Covalent Probes. Analytical Chemistry. 88: 12248-12254. PMID 28193034 DOI: 10.1021/Acs.Analchem.6B03394 |
0.805 |
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| 2016 |
Durzynska I, Xu X, Adelmant G, Ficarro SB, Marto JA, Sliz P, Uljon S, Blacklow SC. STK40 Is a Pseudokinase that Binds the E3 Ubiquitin Ligase COP1. Structure (London, England : 1993). PMID 28089446 DOI: 10.1016/J.Str.2016.12.008 |
0.609 |
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| 2016 |
Tan L, Gurbani D, Weisberg EL, Hunter JC, Li L, Jones DS, Ficarro SB, Mowafy S, Tam CP, Rao S, Du G, Griffin JD, Sorger PK, Marto JA, Westover KD, et al. Structure-guided development of covalent TAK1 inhibitors. Bioorganic & Medicinal Chemistry. PMID 28011204 DOI: 10.1016/J.Bmc.2016.11.035 |
0.685 |
|
| 2016 |
Harshbarger W, Gondi S, Ficarro SB, Hunter J, Udayakumar D, Gurbani D, Singer W, Liu Y, Li L, Marto JA, Westover KD. Structural and Biochemical Analyses Reveal the Mechanism of Glutathione S-Transferase Pi 1 Inhibition by the Anti-cancer Compound Piperlongumine. The Journal of Biological Chemistry. PMID 27872191 DOI: 10.1074/Jbc.M116.750299 |
0.604 |
|
| 2016 |
Odajima J, Saini S, Jung P, Ndassa-Colday Y, Ficaro S, Geng Y, Marco E, Michowski W, Wang YE, DeCaprio JA, Litovchick L, Marto J, Sicinski P. Proteomic Landscape of Tissue-Specific Cyclin E Functions in Vivo. Plos Genetics. 12: e1006429. PMID 27828963 DOI: 10.1371/Journal.Pgen.1006429 |
0.32 |
|
| 2016 |
Norberg E, Lako A, Chen PH, Stanley IA, Zhou F, Ficarro SB, Chapuy B, Chen L, Rodig S, Shin D, Choi DW, Lee S, Shipp MA, Marto JA, Danial NN. Differential contribution of the mitochondrial translation pathway to the survival of diffuse large B-cell lymphoma subsets. Cell Death and Differentiation. PMID 27768122 DOI: 10.1038/Cdd.2016.116 |
0.573 |
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| 2016 |
Cho H, Wivagg CN, Kapoor M, Barry Z, Rohs PD, Suh H, Marto JA, Garner EC, Bernhardt TG. Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously. Nature Microbiology. 1: 16172. PMID 27643381 DOI: 10.1038/Nmicrobiol.2016.172 |
0.316 |
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| 2016 |
Zhang T, Kwiatkowski N, Olson CM, Dixon-Clarke SE, Abraham BJ, Greifenberg AK, Ficarro SB, Elkins JM, Liang Y, Hannett NM, Manz T, Hao M, Bartkowiak B, Greenleaf AL, Marto JA, et al. Covalent targeting of remote cysteine residues to develop CDK12 and CDK13 inhibitors. Nature Chemical Biology. PMID 27571479 DOI: 10.1038/Nchembio.2166 |
0.693 |
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| 2016 |
Wang LD, Ficarro SB, Hutchinson JN, Csepanyi-Komi R, Nguyen PT, Wisniewski E, Sullivan J, Hofmann O, Ligeti E, Marto JA, Wagers AJ. Phosphoproteomic profiling of mouse primary hematopoietic stem and progenitor cells reveals new regulators of HSPC mobilization. Blood. PMID 27365422 DOI: 10.1182/Blood-2016-05-711424 |
0.601 |
|
| 2016 |
Zhang J, Ratanasirintrawoot S, Chandrasekaran S, Wu Z, Ficarro SB, Yu C, Ross CA, Cacchiarelli D, Xia Q, Seligson M, Shinoda G, Xie W, Cahan P, Wang L, Ng SC, ... ... Marto JA, et al. LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency. Cell Stem Cell. PMID 27320042 DOI: 10.1016/J.Stem.2016.05.009 |
0.581 |
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| 2016 |
Uljon S, Xu X, Durzynska I, Stein S, Adelmant G, Marto JA, Pear WS, Blacklow SC. Structural Basis for Substrate Selectivity of the E3 Ligase COP1. Structure (London, England : 1993). PMID 27041596 DOI: 10.1016/J.Str.2016.03.002 |
0.328 |
|
| 2016 |
Suh H, Ficarro SB, Kang UB, Chun Y, Marto JA, Buratowski S. Direct Analysis of Phosphorylation Sites on the Rpb1 C-Terminal Domain of RNA Polymerase II. Molecular Cell. 61: 297-304. PMID 26799764 DOI: 10.1016/J.Molcel.2015.12.021 |
0.6 |
|
| 2016 |
Brown FC, Still E, Cifani P, Reed C, Ficarro S, He J, Koche R, Bhola P, Romanienko P, Mark W, Krivtsov AV, Letai A, Gray N, Marto J, Armstrong SA, et al. Aberrant Phosphorylation of MEF2C Is Dispensable for Hematopoiesis, and Induces Chemotherapy Resistance and Susceptibility to MARK Kinase Inhibition Therapy in Acute Myeloid Leukemia Blood. 128: 436-436. DOI: 10.1182/Blood.V128.22.436.436 |
0.686 |
|
| 2016 |
Hsu JH, Hubbell-Engler B, Adelmant G, Perry J, Cowley G, Marto J, Orkin SH. Abstract PR03: Prmt1 and Prmt1-dependent translation initiation are critical vulnerabilities of osteosarcoma Cancer Research. 76. DOI: 10.1158/1538-7445.Pedca15-Pr03 |
0.381 |
|
| 2016 |
Cato L, Neeb A, Sharp A, Ficarro S, Buzon V, Salvatella X, Marto JA, Bono JSd, Cato AC, Brown M. Abstract 864: Androgen receptor stability in prostate cancer is regulated by the cochaperone Bag-1L Endocrinology. 76: 864-864. DOI: 10.1158/1538-7445.Am2016-864 |
0.527 |
|
| 2015 |
Zhang C, Li X, Adelmant G, Dobbins J, Geisen C, Oser MG, Wucherpfenning KW, Marto JA, Kaelin WG. Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21. Proceedings of the National Academy of Sciences of the United States of America. PMID 26631746 DOI: 10.1073/Pnas.1522006112 |
0.338 |
|
| 2015 |
Park E, Kim N, Ficarro SB, Zhang Y, Lee BI, Cho A, Kim K, Park AK, Park WY, Murray B, Meyerson M, Beroukhim R, Marto JA, Cho J, Eck MJ. Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6. Nature Structural & Molecular Biology. 22: 703-11. PMID 26280531 DOI: 10.1038/Nsmb.3074 |
0.61 |
|
| 2015 |
Tan L, Akahane K, McNally R, Reyskens KM, Ficarro SB, Liu S, Herter-Sprie GS, Koyama S, Pattison MJ, Labella KM, Johannessen L, Akbay EA, Wong KK, Frank DA, Marto JA, et al. Development of Selective Covalent JAK3 Inhibitors. Journal of Medicinal Chemistry. PMID 26258521 DOI: 10.1021/Acs.Jmedchem.5B00710 |
0.69 |
|
| 2015 |
Lee J, Adelmant G, Marto JA, Lee DH. Dephosphorylation of DBC1 by Protein Phosphatase 4 Is Important for p53-Mediated Cellular Functions. Molecules and Cells. 38: 697-704. PMID 26194823 DOI: 10.14348/Molcells.2015.0066 |
0.346 |
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| 2015 |
Lim SM, Xie T, Westover KD, Ficarro SB, Tae HS, Gurbani D, Sim T, Marto JA, Jänne PA, Crews CM, Gray NS. Development of small molecules targeting the pseudokinase Her3. Bioorganic & Medicinal Chemistry Letters. 25: 3382-9. PMID 26094118 DOI: 10.1016/J.Bmcl.2015.04.103 |
0.678 |
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| 2015 |
Zhu D, Wang Z, Zhao JJ, Calimeri T, Meng J, Hideshima T, Fulciniti M, Kang Y, Ficarro SB, Tai YT, Hunter Z, McMilin D, Tong H, Mitsiades CS, Wu CJ, ... ... Marto JA, et al. The Cyclophilin A-CD147 complex promotes the proliferation and homing of multiple myeloma cells. Nature Medicine. 21: 572-80. PMID 26005854 DOI: 10.1038/Nm.3867 |
0.573 |
|
| 2015 |
Yoda A, Adelmant G, Tamburini J, Chapuy B, Shindoh N, Yoda Y, Weigert O, Kopp N, Wu SC, Kim SS, Liu H, Tivey T, Christie AL, Elpek KG, Card J, ... ... Marto JA, et al. Mutations in G protein β subunits promote transformation and kinase inhibitor resistance. Nature Medicine. 21: 71-5. PMID 25485910 DOI: 10.1038/Nm.3751 |
0.333 |
|
| 2015 |
Labidi-Galy SI, Clauss A, Ng V, Duraisamy S, Elias KM, Piao HY, Bilal E, Davidowitz RA, Lu Y, Badalian-Very G, Györffy B, Kang UB, Ficarro S, Ganesan S, Mills GB, ... Marto JA, et al. Elafin drives poor outcome in high-grade serous ovarian cancers and basal-like breast tumors. Oncogene. 34: 373-83. PMID 24469047 DOI: 10.1038/Onc.2013.562 |
0.59 |
|
| 2015 |
Brown F, Still E, Cifani P, Ficarro S, Pouliot G, Drill E, Gonen M, He J, Balasubramanian S, Zhong S, Pavlick D, Yilmazel B, Krivtsov AV, Alonzo TA, Meshinchi S, ... ... Marto J, et al. Genomic and Proteomic Analysis of Primary Chemoresistance and Induction Failure in Acute Myeloid Leukemia Blood. 126: 88-88. DOI: 10.1182/Blood.V126.23.88.88 |
0.69 |
|
| 2015 |
Cato L, Neeb A, Adelmant G, Ficarro S, Westerling T, Marto JA, Cato AC, Brown M. Abstract 4677: Control of androgen receptor function by the genomic action of the cochaperone Bag-1L Cancer Research. 75: 4677-4677. DOI: 10.1158/1538-7445.Am2015-4677 |
0.57 |
|
| 2015 |
Gurbani D, Tan L, Ficarro S, Hunter JC, Singer W, Vazquez FB, Xie T, Lim SM, Marto J, Gray NS, Westover KD. Abstract A178: Structure guided development of irreversible inhibitors for TAK1 Molecular Cancer Therapeutics. 14. DOI: 10.1158/1535-7163.Targ-15-A178 |
0.645 |
|
| 2015 |
Park E, Kim N, Ficarro SB, Zhang Y, Lee BI, Cho A, Kim K, Park AKJ, Park WY, Murray B, Meyerson M, Beroukhim R, Marto JA, Cho J, Eck MJ. Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6 Nature Structural and Molecular Biology. DOI: 10.1038/nsmb.3074 |
0.502 |
|
| 2014 |
Xie T, Lim SM, Westover KD, Dodge ME, Ercan D, Ficarro SB, Udayakumar D, Gurbani D, Tae HS, Riddle SM, Sim T, Marto JA, Jänne PA, Crews CM, Gray NS. Pharmacological targeting of the pseudokinase Her3. Nature Chemical Biology. 10: 1006-12. PMID 25326665 DOI: 10.1038/Nchembio.1658 |
0.686 |
|
| 2014 |
Hu Y, Petit SA, Ficarro SB, Toomire KJ, Xie A, Lim E, Cao SA, Park E, Eck MJ, Scully R, Brown M, Marto JA, Livingston DM. PARP1-driven poly-ADP-ribosylation regulates BRCA1 function in homologous recombination-mediated DNA repair. Cancer Discovery. 4: 1430-47. PMID 25252691 DOI: 10.1158/2159-8290.Cd-13-0891 |
0.568 |
|
| 2014 |
Quan J, Adelmant G, Marto JA, Look AT, Yusufzai T. The chromatin remodeling factor CHD5 is a transcriptional repressor of WEE1. Plos One. 9: e108066. PMID 25247294 DOI: 10.1371/Journal.Pone.0108066 |
0.308 |
|
| 2014 |
Gridling M, Ficarro SB, Breitwieser FP, Song L, Parapatics K, Colinge J, Haura EB, Marto JA, Superti-Furga G, Bennett KL, Rix U. Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics. Molecular Cancer Therapeutics. 13: 2751-62. PMID 25189542 DOI: 10.1158/1535-7163.Mct-14-0152 |
0.626 |
|
| 2014 |
Kwiatkowski N, Zhang T, Rahl PB, Abraham BJ, Reddy J, Ficarro SB, Dastur A, Amzallag A, Ramaswamy S, Tesar B, Jenkins CE, Hannett NM, McMillin D, Sanda T, Sim T, ... ... Marto JA, et al. Targeting transcription regulation in cancer with a covalent CDK7 inhibitor. Nature. 511: 616-20. PMID 25043025 DOI: 10.1038/Nature13393 |
0.693 |
|
| 2014 |
Meijer DH, Sun Y, Liu T, Kane MF, Alberta JA, Adelmant G, Kupp R, Marto JA, Rowitch DH, Nakatani Y, Stiles CD, Mehta S. An amino terminal phosphorylation motif regulates intranuclear compartmentalization of Olig2 in neural progenitor cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 8507-18. PMID 24948806 DOI: 10.1523/Jneurosci.0309-14.2014 |
0.344 |
|
| 2014 |
Doherty MF, Adelmant G, Cecchetelli AD, Marto JA, Cram EJ. Proteomic analysis reveals CACN-1 is a component of the spliceosome in Caenorhabditis elegans. G3 (Bethesda, Md.). 4: 1555-64. PMID 24948787 DOI: 10.1534/G3.114.012013 |
0.354 |
|
| 2014 |
Hunter JC, Gurbani D, Ficarro SB, Carrasco MA, Lim SM, Choi HG, Xie T, Marto JA, Chen Z, Gray NS, Westover KD. In situ selectivity profiling and crystal structure of SML-8-73-1, an active site inhibitor of oncogenic K-Ras G12C. Proceedings of the National Academy of Sciences of the United States of America. 111: 8895-900. PMID 24889603 DOI: 10.1073/Pnas.1404639111 |
0.635 |
|
| 2014 |
Lu Y, Loh YH, Li H, Cesana M, Ficarro SB, Parikh JR, Salomonis N, Toh CX, Andreadis ST, Luckey CJ, Collins JJ, Daley GQ, Marto JA. Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells. Cell Stem Cell. 15: 92-101. PMID 24813856 DOI: 10.1016/J.Stem.2014.04.002 |
0.575 |
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| 2014 |
Lee DH, Acharya SS, Kwon M, Drane P, Guan Y, Adelmant G, Kalev P, Shah J, Pellman D, Marto JA, Chowdhury D. Dephosphorylation enables the recruitment of 53BP1 to double-strand DNA breaks. Molecular Cell. 54: 512-25. PMID 24703952 DOI: 10.1016/J.Molcel.2014.03.020 |
0.322 |
|
| 2014 |
Watanabe H, Ma Q, Peng S, Adelmant G, Swain D, Song W, Fox C, Francis JM, Pedamallu CS, DeLuca DS, Brooks AN, Wang S, Que J, Rustgi AK, Wong KK, ... ... Marto JA, et al. SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas. The Journal of Clinical Investigation. 124: 1636-45. PMID 24590290 DOI: 10.1172/Jci71545 |
0.307 |
|
| 2014 |
Ficarro SB, Biagi JM, Wang J, Scotcher J, Koleva RI, Card JD, Adelmant G, He H, Askenazi M, Marshall AG, Young NL, Gray NS, Marto JA. Protected amine labels: a versatile molecular scaffold for multiplexed nominal mass and sub-Da isotopologue quantitative proteomic reagents. Journal of the American Society For Mass Spectrometry. 25: 636-50. PMID 24496597 DOI: 10.1007/S13361-013-0811-X |
0.731 |
|
| 2014 |
Lim SM, Westover KD, Ficarro SB, Harrison RA, Choi HG, Pacold ME, Carrasco M, Hunter J, Kim ND, Xie T, Sim T, Jänne PA, Meyerson M, Marto JA, Engen JR, et al. Therapeutic targeting of oncogenic K-Ras by a covalent catalytic site inhibitor. Angewandte Chemie (International Ed. in English). 53: 199-204. PMID 24259466 DOI: 10.1002/Anie.201307387 |
0.623 |
|
| 2014 |
Wang LD, Nguyen P, Ficarro SB, Hutchinson J, Hofmann O, Marto JA, Wagers AJ. Small-Scale Mass Spectrometry-Based Phosphoproteomic Analysis of Primary Hematopoietic Stem and Progenitor Cells to Identify Critical Regulators of HSPC Mobilization and Leukemogenesis Blood. 124: 4336-4336. DOI: 10.1182/Blood.V124.21.4336.4336 |
0.618 |
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| 2014 |
Yoda A, Adelmant G, Tamburini J, Chapuy B, Shindoh N, Yoda Y, Weigert O, Kopp N, Wu S, Kim SS, Liu H, Tivey T, Christie AL, Elpek KG, Card J, ... ... Marto JA, et al. GNB1 Activating Mutations Promote Myeloid and Lymphoid Neoplasms Targetable By Combined PI3K/mTOR Inhibition Blood. 124: 3567-3567. DOI: 10.1182/Blood.V124.21.3567.3567 |
0.352 |
|
| 2013 |
Toms AV, Deshpande A, McNally R, Jeong Y, Rogers JM, Kim CU, Gruner SM, Ficarro SB, Marto JA, Sattler M, Griffin JD, Eck MJ. Structure of a pseudokinase-domain switch that controls oncogenic activation of Jak kinases. Nature Structural & Molecular Biology. 20: 1221-3. PMID 24013208 DOI: 10.1038/Nsmb.2673 |
0.564 |
|
| 2013 |
Zhou F, Lu Y, Ficarro SB, Adelmant G, Jiang W, Luckey CJ, Marto JA. Genome-scale proteome quantification by DEEP SEQ mass spectrometry. Nature Communications. 4: 2171. PMID 23863870 DOI: 10.1038/Ncomms3171 |
0.609 |
|
| 2013 |
Andrawes MB, Xu X, Liu H, Ficarro SB, Marto JA, Aster JC, Blacklow SC. Intrinsic selectivity of Notch 1 for Delta-like 4 over Delta-like 1. The Journal of Biological Chemistry. 288: 25477-89. PMID 23839946 DOI: 10.1074/Jbc.M113.454850 |
0.568 |
|
| 2013 |
Webber JT, Askenazi M, Ficarro SB, Iglehart MA, Marto JA. Library dependent LC-MS/MS acquisition via mzAPI/Live. Proteomics. 13: 1412-6. PMID 23457059 DOI: 10.1002/Pmic.201200583 |
0.591 |
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| 2013 |
Tu D, Zhu Z, Zhou AY, Yun CH, Lee KE, Toms AV, Li Y, Dunn GP, Chan E, Thai T, Yang S, Ficarro SB, Marto JA, Jeon H, Hahn WC, et al. Structure and ubiquitination-dependent activation of TANK-binding kinase 1. Cell Reports. 3: 747-58. PMID 23453972 DOI: 10.1016/J.Celrep.2013.01.033 |
0.625 |
|
| 2013 |
Duarte M, Wang L, Calderwood MA, Adelmant G, Ohashi M, Roecklein-Canfield J, Marto JA, Hill DE, Deng H, Johannsen E. An RS motif within the Epstein-Barr virus BLRF2 tegument protein is phosphorylated by SRPK2 and is important for viral replication. Plos One. 8: e53512. PMID 23326445 DOI: 10.1371/Journal.Pone.0053512 |
0.32 |
|
| 2013 |
Tu D, Zhu Z, Zhou AY, Yun C, Lee K, Toms AV, Li Y, Dunn GP, Chan E, Thai T, Yang S, Ficarro SB, Marto JA, Jeon H, Hahn WC, et al. Structure of Tank-Binding Kinase 1 Cell Reports. DOI: 10.2210/Pdb4Im0/Pdb |
0.582 |
|
| 2013 |
Mandel M, Askenazi M, Zhang Y, Marto JA. Variance function estimation in quantitative mass spectrometry with application to iTRAQ labeling Annals of Applied Statistics. 7: 1-24. DOI: 10.1214/12-Aoas572 |
0.306 |
|
| 2013 |
Yoda A, Adelmant G, Shindoh N, Chapuy B, Yoda Y, Weigert O, Kopp N, Wu S, Kim SS, Liu H, Tivey T, Tyner JW, Gotlib J, Deininger MW, Turley S, ... Marto JA, et al. The Beta-Subunit Of Heterotrimeric G Proteins Harbors Gain-Of-Function Mutations In Multiple Hematologic Malignancies Blood. 122: 2510-2510. DOI: 10.1182/Blood.V122.21.2510.2510 |
0.374 |
|
| 2013 |
Wang LD, Ficarro SB, Sullivan J, Nguyen P, Marto JA, Wagers AJ. Novel Small-Scale Phosphoproteomic Discovery Of Therapeutic Targets For Hematopoietic Stem and Progenitor Cell Mobilization Blood. 122: 1183-1183. DOI: 10.1182/Blood.V122.21.1183.1183 |
0.597 |
|
| 2013 |
Yoda A, Adelmant G, Shindoh N, Chapuy B, Yoda Y, Weigert O, Kopp N, Wu S, Kim SS, Liu H, Tivey T, Tyner JW, Gotlib J, Deininger MW, Turley S, ... Marto JA, et al. Abstract PR07: Novel oncogenic mutations in the beta subunit of heteromeric G-proteins identified by functional cDNA library screening. Molecular Cancer Therapeutics. 12. DOI: 10.1158/1535-7163.Targ-13-Pr07 |
0.374 |
|
| 2013 |
Labidi-Galy I, Clauss A, Ng V, Duraisamy S, Elias KM, Bilal E, Davidowitz RA, Lu Y, Badalian-Very G, Piao H, Kang U, Ficarro S, Ganesan S, Mills GB, Marto J, et al. Abstract B74: Elafin drives poor outcome in high-grade serous ovarian cancers and basal-like breast tumors Clinical Cancer Research. 19. DOI: 10.1158/1078-0432.Ovca13-B74 |
0.584 |
|
| 2013 |
Duraisamy S, Levanon K, Adelmant G, Piao H, Liu J, Matulonis U, Hirsch M, Marto JA, Drapkin R. Abstract A80: TNFAIP2 is required for growth and migration of ovarian cancer cells and functions to regulate trafficking of receptor tyrosine kinases Clinical Cancer Research. 19. DOI: 10.1158/1078-0432.Ovca13-A80 |
0.385 |
|
| 2012 |
Fine DA, Rozenblatt-Rosen O, Padi M, Korkhin A, James RL, Adelmant G, Yoon R, Guo L, Berrios C, Zhang Y, Calderwood MA, Velmurgan S, Cheng J, Marto JA, Hill DE, et al. Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor. Plos Pathogens. 8: e1002949. PMID 23093934 DOI: 10.1371/Journal.Ppat.1002949 |
0.333 |
|
| 2012 |
Caro P, Kishan AU, Norberg E, Stanley IA, Chapuy B, Ficarro SB, Polak K, Tondera D, Gounarides J, Yin H, Zhou F, Green MR, Chen L, Monti S, Marto JA, et al. Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma. Cancer Cell. 22: 547-60. PMID 23079663 DOI: 10.1016/J.Ccr.2012.08.014 |
0.576 |
|
| 2012 |
Sikorski TW, Joo YJ, Ficarro SB, Askenazi M, Buratowski S, Marto JA. Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters. The Journal of Biological Chemistry. 287: 35397-408. PMID 22902623 DOI: 10.1074/Jbc.M112.391581 |
0.58 |
|
| 2012 |
Rozenblatt-Rosen O, Deo RC, Padi M, Adelmant G, Calderwood MA, Rolland T, Grace M, Dricot A, Askenazi M, Tavares M, Pevzner SJ, Abderazzaq F, Byrdsong D, Carvunis AR, Chen AA, ... ... Marto JA, et al. Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature. 487: 491-5. PMID 22810586 DOI: 10.1038/Nature11288 |
0.566 |
|
| 2012 |
Zhou F, Lu Y, Ficarro SB, Webber JT, Marto JA. Nanoflow low pressure high peak capacity single dimension LC-MS/MS platform for high-throughput, in-depth analysis of mammalian proteomes. Analytical Chemistry. 84: 5133-9. PMID 22519751 DOI: 10.1021/Ac2031404 |
0.573 |
|
| 2012 |
Lee DH, Goodarzi AA, Adelmant GO, Pan Y, Jeggo PA, Marto JA, Chowdhury D. Phosphoproteomic analysis reveals that PP4 dephosphorylates KAP-1 impacting the DNA damage response. The Embo Journal. 31: 2403-15. PMID 22491012 DOI: 10.1038/Emboj.2012.86 |
0.332 |
|
| 2012 |
Koleva RI, Ficarro SB, Radomska HS, Carrasco-Alfonso MJ, Alberta JA, Webber JT, Luckey CJ, Marcucci G, Tenen DG, Marto JA. C/EBPα and DEK coordinately regulate myeloid differentiation. Blood. 119: 4878-88. PMID 22474248 DOI: 10.1182/Blood-2011-10-383083 |
0.605 |
|
| 2012 |
Zhang T, Inesta-Vaquera F, Niepel M, Zhang J, Ficarro SB, Machleidt T, Xie T, Marto JA, Kim N, Sim T, Laughlin JD, Park H, LoGrasso PV, Patricelli M, Nomanbhoy TK, et al. Discovery of potent and selective covalent inhibitors of JNK. Chemistry & Biology. 19: 140-54. PMID 22284361 DOI: 10.1016/J.Chembiol.2011.11.010 |
0.691 |
|
| 2012 |
Cardoza JD, Parikh JR, Ficarro SB, Marto JA. Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 4: 141-62. PMID 22231900 DOI: 10.1002/Wsbm.166 |
0.61 |
|
| 2012 |
Wang LD, Ficarro SB, Sullivan J, Marto JA, Wagers AJ. Novel Nano-Scale Phosphoproteomic Identification of Pathways Responsible for Hematopoietic Stem and Progenitor Cell Mobilization and Malignant Transformation Blood. 120: 4085-4085. DOI: 10.1182/Blood.V120.21.4085.4085 |
0.619 |
|
| 2012 |
Nonami A, Sattler M, Weisberg EL, Qingsong L, Zhang J, Adelmant G, Marto JA, Kohl N, Kung AL, Sim T, Gray NS, Griffin JD. Deciphering the Critical Pathways of Mutant N-RAS in AML Using Small Molecule Inhibitors. Blood. 120: 2455-2455. DOI: 10.1182/Blood.V120.21.2455.2455 |
0.523 |
|
| 2011 |
Luckey CJ, Lu Y, Marto JA. Understanding the first steps in embryonic stem cell exit from the pluripotent state. Transfusion. 51: 118S-124S. PMID 22074622 DOI: 10.1111/J.1537-2995.2011.03374.X |
0.348 |
|
| 2011 |
Sikorski TW, Ficarro SB, Holik J, Kim T, Rando OJ, Marto JA, Buratowski S. Sub1 and RPA associate with RNA polymerase II at different stages of transcription. Molecular Cell. 44: 397-409. PMID 22055186 DOI: 10.1016/J.Molcel.2011.09.013 |
0.574 |
|
| 2011 |
Savitski MM, Sweetman G, Askenazi M, Marto JA, Lang M, Zinn N, Bantscheff M. Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers. Analytical Chemistry. 83: 8959-67. PMID 22017476 DOI: 10.1021/Ac201760X |
0.34 |
|
| 2011 |
Zhou F, Sikorski TW, Ficarro SB, Webber JT, Marto JA. Online nanoflow reversed phase-strong anion exchange-reversed phase liquid chromatography-tandem mass spectrometry platform for efficient and in-depth proteome sequence analysis of complex organisms. Analytical Chemistry. 83: 6996-7005. PMID 21851055 DOI: 10.1021/Ac200639V |
0.606 |
|
| 2011 |
Ficarro SB, Zhang Y, Carrasco-Alfonso MJ, Garg B, Adelmant G, Webber JT, Luckey CJ, Marto JA. Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis. Molecular & Cellular Proteomics : McP. 10: O111.011064. PMID 21788404 DOI: 10.1074/Mcp.O111.011064 |
0.615 |
|
| 2011 |
Hsu PP, Kang SA, Rameseder J, Zhang Y, Ottina KA, Lim D, Peterson TR, Choi Y, Gray NS, Yaffe MB, Marto JA, Sabatini DM. The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling. Science (New York, N.Y.). 332: 1317-22. PMID 21659604 DOI: 10.1126/Science.1199498 |
0.544 |
|
| 2011 |
Tu D, Li Y, Song HK, Toms AV, Gould CJ, Ficarro SB, Marto JA, Goode BL, Eck MJ. Crystal structure of a coiled-coil domain from human ROCK I. Plos One. 6: e18080. PMID 21445309 DOI: 10.1371/Journal.Pone.0018080 |
0.58 |
|
| 2011 |
Meixner A, Boldt K, Van Troys M, Askenazi M, Gloeckner CJ, Bauer M, Marto JA, Ampe C, Kinkl N, Ueffing M. A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics. Molecular & Cellular Proteomics : McP. 10: M110.001172. PMID 20876399 DOI: 10.1074/Mcp.M110.001172 |
0.307 |
|
| 2010 |
Askenazi M, Marto JA, Linial M. The complete peptide dictionary--a meta-proteomics resource. Proteomics. 10: 4306-10. PMID 21082763 DOI: 10.1002/Pmic.201000270 |
0.323 |
|
| 2010 |
Chen Z, Sasaki T, Tan X, Carretero J, Shimamura T, Li D, Xu C, Wang Y, Adelmant GO, Capelletti M, Lee HJ, Rodig SJ, Borgman C, Park SI, Kim HR, ... ... Marto JA, et al. Inhibition of ALK, PI3K/MEK, and HSP90 in murine lung adenocarcinoma induced by EML4-ALK fusion oncogene. Cancer Research. 70: 9827-36. PMID 20952506 DOI: 10.1158/0008-5472.Can-10-1671 |
0.498 |
|
| 2010 |
Zhou F, Cardoza JD, Ficarro SB, Adelmant GO, Lazaro JB, Marto JA. Online nanoflow RP-RP-MS reveals dynamics of multicomponent Ku complex in response to DNA damage. Journal of Proteome Research. 9: 6242-55. PMID 20873769 DOI: 10.1021/Pr1004696 |
0.6 |
|
| 2010 |
Argetsinger LS, Stuckey JA, Robertson SA, Koleva RI, Cline JM, Marto JA, Myers MG, Carter-Su C. Tyrosines 868, 966, and 972 in the kinase domain of JAK2 are autophosphorylated and required for maximal JAK2 kinase activity. Molecular Endocrinology (Baltimore, Md.). 24: 1062-76. PMID 20304997 DOI: 10.1210/Me.2009-0355 |
0.357 |
|
| 2010 |
Askenazi M, Li S, Singh S, Marto JA. Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data. Proteomics. 10: 1880-5. PMID 20198642 DOI: 10.1002/Pmic.200900723 |
0.331 |
|
| 2010 |
Zhang Y, Askenazi M, Jiang J, Luckey CJ, Griffin JD, Marto JA. A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia. Molecular & Cellular Proteomics : McP. 9: 780-90. PMID 20019052 DOI: 10.1074/Mcp.M900452-Mcp200 |
0.405 |
|
| 2009 |
Parikh JR, Askenazi M, Ficarro SB, Cashorali T, Webber JT, Blank NC, Zhang Y, Marto JA. multiplierz: an extensible API based desktop environment for proteomics data analysis. Bmc Bioinformatics. 10: 364. PMID 19874609 DOI: 10.1186/1471-2105-10-364 |
0.587 |
|
| 2009 |
Ficarro SB, Adelmant G, Tomar MN, Zhang Y, Cheng VJ, Marto JA. Magnetic bead processor for rapid evaluation and optimization of parameters for phosphopeptide enrichment. Analytical Chemistry. 81: 4566-75. PMID 19408940 DOI: 10.1021/Ac9004452 |
0.599 |
|
| 2009 |
Zhang Y, Ficarro SB, Li S, Marto JA. Optimized Orbitrap HCD for quantitative analysis of phosphopeptides. Journal of the American Society For Mass Spectrometry. 20: 1425-34. PMID 19403316 DOI: 10.1016/J.Jasms.2009.03.019 |
0.622 |
|
| 2009 |
Robertson SA, Koleva RI, Argetsinger LS, Carter-Su C, Marto JA, Feener EP, Myers MG. Regulation of Jak2 function by phosphorylation of Tyr317 and Tyr637 during cytokine signaling. Molecular and Cellular Biology. 29: 3367-78. PMID 19364823 DOI: 10.1128/Mcb.00278-09 |
0.349 |
|
| 2009 |
Askenazi M, Parikh JR, Marto JA. mzAPI: a new strategy for efficiently sharing mass spectrometry data. Nature Methods. 6: 240-1. PMID 19333238 DOI: 10.1038/Nmeth0409-240 |
0.307 |
|
| 2009 |
Ficarro SB, Zhang Y, Lu Y, Moghimi AR, Askenazi M, Hyatt E, Smith ED, Boyer L, Schlaeger TM, Luckey CJ, Marto JA. Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells. Analytical Chemistry. 81: 3440-7. PMID 19331382 DOI: 10.1021/Ac802720E |
0.607 |
|
| 2009 |
Hamirally S, Kamil JP, Ndassa-Colday YM, Lin AJ, Jahng WJ, Baek MC, Noton S, Silva LA, Simpson-Holley M, Knipe DM, Golan DE, Marto JA, Coen DM. Viral mimicry of Cdc2/cyclin-dependent kinase 1 mediates disruption of nuclear lamina during human cytomegalovirus nuclear egress. Plos Pathogens. 5: e1000275. PMID 19165338 DOI: 10.1371/Journal.Ppat.1000275 |
0.366 |
|
| 2009 |
Koleva RI, Ficarro S, Askenazi M, Parikh J, Marto JA. Abstract B51: Dynamic remodeling of CEBPα complexes in myeloid differentiation Cancer Research. 69. DOI: 10.1158/0008-5472.Fbcr09-B51 |
0.614 |
|
| 2008 |
Phanstiel D, Zhang Y, Marto JA, Coon JJ. Peptide and protein quantification using iTRAQ with electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 19: 1255-62. PMID 18620867 DOI: 10.1016/J.Jasms.2008.05.023 |
0.528 |
|
| 2008 |
Ficarro SB, Parikh JR, Blank NC, Marto JA. Niobium(V) oxide (Nb2O5): application to phosphoproteomics. Analytical Chemistry. 80: 4606-13. PMID 18491922 DOI: 10.1021/Ac800564H |
0.605 |
|
| 2008 |
Robertson SA, Koleva RI, Marto JA, Argetsinger LS, Carter‐Su C, Feener EP, Myers MG. Identification and Characterization of Novel Phosphorylation Sites on Jak2 The Faseb Journal. 22: 86-86. DOI: 10.1096/Fasebj.22.2_Supplement.86 |
0.324 |
|
| 2006 |
Ndassa YM, Orsi C, Marto JA, Chen S, Ross MM. Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications. Journal of Proteome Research. 5: 2789-99. PMID 17022650 DOI: 10.1021/Pr0602803 |
0.367 |
|
| 2006 |
Koleva RI, Conley BA, Romero D, Riley KS, Marto JA, Lux A, Vary CP. Endoglin structure and function: Determinants of endoglin phosphorylation by transforming growth factor-beta receptors. The Journal of Biological Chemistry. 281: 25110-23. PMID 16785228 DOI: 10.1074/Jbc.M601288200 |
0.334 |
|
| 2004 |
Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. Journal of Proteome Research. 3: 621-6. PMID 15253445 DOI: 10.1021/Pr0499794 |
0.757 |
|
| 2004 |
Stover DR, Caldwell J, Marto J, Root K, Mestan J, Stumm M, Ornatsky O, Orsi C, Radosevic N, Liao L, Fabbro D, Moran MF. Differential phosphoprofiles of EGF and EGFR kinase inhibitor-treated human tumor cells and mouse xenografts Clinical Proteomics. 1: 69-80. DOI: 10.1385/Cp:1:1:069 |
0.675 |
|
| 2003 |
Zarling AL, Luckey CJ, Marto JA, White FM, Brame CJ, Evans AM, Lehner PJ, Cresswell P, Shabanowitz J, Hunt DF, Engelhard VH. Tapasin is a facilitator, not an editor, of class I MHC peptide binding. Journal of Immunology (Baltimore, Md. : 1950). 171: 5287-95. PMID 14607930 DOI: 10.4049/Jimmunol.171.10.5287 |
0.773 |
|
| 2003 |
Ficarro S, Chertihin O, Westbrook VA, White F, Jayes F, Kalab P, Marto JA, Shabanowitz J, Herr JC, Hunt DF, Visconti PE. Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation. The Journal of Biological Chemistry. 278: 11579-89. PMID 12509440 DOI: 10.1074/Jbc.M202325200 |
0.788 |
|
| 2002 |
Lippolis JD, White FM, Marto JA, Luckey CJ, Bullock TN, Shabanowitz J, Hunt DF, Engelhard VH. Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets. Journal of Immunology (Baltimore, Md. : 1950). 169: 5089-97. PMID 12391225 DOI: 10.4049/Jimmunol.169.9.5089 |
0.706 |
|
| 2002 |
Flyer DC, Ramakrishna V, Miller C, Myers H, McDaniel M, Root K, Flournoy C, Engelhard VH, Canaday DH, Marto JA, Ross MM, Hunt DF, Shabanowitz J, White FM. Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product. Infection and Immunity. 70: 2926-32. PMID 12010981 DOI: 10.1128/Iai.70.6.2926-2932.2002 |
0.71 |
|
| 2002 |
Caldwell JA, Orsi C, Root KE, Dharsee M, Wang Z, Stewart II, White FM, Brame CJ, Guha A, Micaleff J, Ornatsky O, Marto JA. Comprehensive comparative proteome analysis Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 57-58. |
0.652 |
|
| 2002 |
Syka JEP, Bai DL, Stafford GC, Horning S, Shabanowitz J, Hunt DF, Marto JA. A linear quadrupole ion trap Fourier transform mass spectrometer: Performance characterization and applications to proteomics Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 129-130. |
0.402 |
|
| 2002 |
Larsen B, White F, Chen J, Ornatsky O, Marto J, Caldwell J, Orsi C, Dahzee M, Wang Z, Figeys D. Phosphorylation analysis (phosmap) of complex protein mixtures Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 165-166. |
0.682 |
|
| 2001 |
Kao H, Marto JA, Hoffmann TK, Shabanowitz J, Finkelstein SD, Whiteside TL, Hunt DF, Finn OJ. Identification of cyclin B1 as a shared human epithelial tumor-associated antigen recognized by T cells. The Journal of Experimental Medicine. 194: 1313-23. PMID 11696596 DOI: 10.1084/Jem.194.9.1313 |
0.638 |
|
| 2001 |
Luckey CJ, Marto JA, Partridge M, Hall E, White FM, Lippolis JD, Shabanowitz J, Hunt DF, Engelhard VH. Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors. Journal of Immunology (Baltimore, Md. : 1950). 167: 1212-21. PMID 11466336 DOI: 10.4049/Jimmunol.167.3.1212 |
0.732 |
|
| 2001 |
Nepom GT, Lippolis JD, White FM, Masewicz S, Marto JA, Herman A, Luckey CJ, Falk B, Shabanowitz J, Hunt DF, Engelhard VH, Nepom BS. Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65). Proceedings of the National Academy of Sciences of the United States of America. 98: 1763-8. PMID 11172025 DOI: 10.1073/Pnas.98.4.1763 |
0.702 |
|
| 2000 |
Martin SE, Shabanowitz J, Hunt DF, Marto JA. Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 72: 4266-74. PMID 11008759 DOI: 10.1021/Ac000497V |
0.64 |
|
| 2000 |
Crotzer VL, Christian RE, Brooks JM, Shabanowitz J, Settlage RE, Marto JA, White FM, Rickinson AB, Hunt DF, Engelhard VH. Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines. Journal of Immunology (Baltimore, Md. : 1950). 164: 6120-9. PMID 10843661 DOI: 10.4049/Jimmunol.164.12.6120 |
0.699 |
|
| 2000 |
Celli S, Marto JA, Falchetto R, Shabanowitz J, Valdivia LA, Fung JJ, Hunt DF, Kelly RH. Serum protein immunogenicity: implications for liver xenografting. Electrophoresis. 21: 965-75. PMID 10768783 DOI: 10.1002/(Sici)1522-2683(20000301)21:5<965::Aid-Elps965>3.0.Co;2-D |
0.599 |
|
| 1999 |
Pierce RA, Field ED, den Haan JM, Caldwell JA, White FM, Marto JA, Wang W, Frost LM, Blokland E, Reinhardus C, Shabanowitz J, Hunt DF, Goulmy E, Engelhard VH. Cutting edge: the HLA-A*0101-restricted HY minor histocompatibility antigen originates from DFFRY and contains a cysteinylated cysteine residue as identified by a novel mass spectrometric technique. Journal of Immunology (Baltimore, Md. : 1950). 163: 6360-4. PMID 10586024 |
0.78 |
|
| 1998 |
Luckey CJ, King GM, Marto JA, Venketeswaran S, Maier BF, Crotzer VL, Colella TA, Shabanowitz J, Hunt DF, Engelhard VH. Proteasomes can either generate or destroy MHC class I epitopes: evidence for nonproteasomal epitope generation in the cytosol. Journal of Immunology (Baltimore, Md. : 1950). 161: 112-21. PMID 9647214 |
0.474 |
|
| 1996 |
White FM, Marto JA, Marshall AG. An external source 7 T Fourier transform ion cyclotron resonance mass spectrometer with electrostatic ion guide. Rapid Communications in Mass Spectrometry : Rcm. 10: 1845-9. PMID 8953787 DOI: 10.1002/(Sici)1097-0231(199611)10:14<1845::Aid-Rcm749>3.0.Co;2-# |
0.599 |
|
| 1996 |
Senko MW, Hendrickson CL, Pasa-Tolić L, Marto JA, White FM, Guan S, Marshall AG. Electrospray ionization Fourier transform ion cyclotron resonance at 9.4 T. Rapid Communications in Mass Spectrometry : Rcm. 10: 1824-8. PMID 8953784 DOI: 10.1002/(Sici)1097-0231(199611)10:14<1824::Aid-Rcm695>3.0.Co;2-E |
0.604 |
|
| 1995 |
Marto JA, Marshall AG, May MA, Limbach PA. Ion trajectories in an electrostatic ion guide for external ion source fourier transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 6: 936-46. PMID 24214038 DOI: 10.1016/1044-0305(95)94194-X |
0.585 |
|
| 1995 |
Solouki T, Marto JA, White FM, Guan S, Marshall AG. Attomole biomolecule mass analysis by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance. Analytical Chemistry. 67: 4139-44. PMID 8633766 DOI: 10.1021/Ac00118A017 |
0.621 |
|
| 1995 |
Marto JA, White FM, Seldomridge S, Marshall AG. Structural characterization of phospholipids by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 67: 3979-84. PMID 8633761 DOI: 10.1021/Ac00117A025 |
0.61 |
|
| 1994 |
Marto JA, Guan S, Marshall AG. Wide-mass-range axialization for high-resolution Fourier-transform ion cyclotron resonance mass spectrometry of externally generated ions. Rapid Communications in Mass Spectrometry : Rcm. 8: 615-20. PMID 7949329 DOI: 10.1002/Rcm.1290080809 |
0.429 |
|
| 1994 |
Marto JA, Marshall AG, Schweikhard L. A two-electrode ion trap for Fourier transform ion cyclotron resonance mass spectrometry International Journal of Mass Spectrometry and Ion Processes. 137: 9-30. DOI: 10.1016/0168-1176(94)85008-9 |
0.424 |
|
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