| Year |
Citation |
Score |
| 2024 |
Meyer E, Saldivar EV, Kokot M, Xue B, Deorowicz S, Rhee SY, Salzman J. A reference-free algorithm discovers regulation in the plant transcriptome. Biorxiv : the Preprint Server For Biology. PMID 38826472 DOI: 10.1101/2024.05.23.595613 |
0.322 |
|
| 2024 |
Ginzburg DN, Cox JA, Rhee SY. Non-destructive, whole-plant phenotyping reveals dynamic changes in water use efficiency, photosynthesis, and rhizosphere acidification of sorghum accessions under osmotic stress. Plant Direct. 8: e571. PMID 38464685 DOI: 10.1002/pld3.571 |
0.319 |
|
| 2024 |
Field S, Dorone Y, Dwyer WP, Cox JA, Raba D, Froehlich J, Blea M, Carmo OMS, Wallace IS, Hastings R, Boeynaems S, Rhee SY. Arabidopsis thaliana RHAMNOSE 1 condensate formation drives UDP-rhamnose synthesis. Biorxiv : the Preprint Server For Biology. PMID 38464008 DOI: 10.1101/2024.02.15.580454 |
0.777 |
|
| 2023 |
Cho H, Banf M, Shahzad Z, Van Leene J, Bossi F, Ruffel S, Bouain N, Cao P, Krouk G, De Jaeger G, Lacombe B, Brandizzi F, Rhee SY, Rouached H. ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis. Current Biology : Cb. PMID 36963384 DOI: 10.1016/j.cub.2023.03.005 |
0.757 |
|
| 2023 |
Field S, Jang GJ, Dean C, Strader LC, Rhee SY. Plants use molecular mechanisms mediated by biomolecular condensates to integrate environmental cues with development. The Plant Cell. PMID 36879427 DOI: 10.1093/plcell/koad062 |
0.32 |
|
| 2023 |
Zhao K, Rhee SY. Interpreting omics data with pathway enrichment analysis. Trends in Genetics : Tig. PMID 36750393 DOI: 10.1016/j.tig.2023.01.003 |
0.74 |
|
| 2022 |
Ginzburg DN, Bossi F, Rhee SY. Uncoupling differential water usage from drought resistance in a dwarf Arabidopsis mutant. Plant Physiology. PMID 36053183 DOI: 10.1093/plphys/kiac411 |
0.767 |
|
| 2022 |
Bossi F, Jin B, Lazarus E, Cartwright H, Dorone Y, Rhee SY. CHIQUITA1 maintains temporal transition between proliferation and differentiation in Arabidopsis thaliana. Development (Cambridge, England). PMID 35574989 DOI: 10.1242/dev.200565 |
0.744 |
|
| 2022 |
Zhao K, Rhee SY. Omics-guided metabolic pathway discovery in plants: Resources, approaches, and opportunities. Current Opinion in Plant Biology. 67: 102222. PMID 35512431 DOI: 10.1016/j.pbi.2022.102222 |
0.783 |
|
| 2021 |
Dorone Y, Boeynaems S, Rhee SY. Live imaging embryos under different hydration conditions. Star Protocols. 2: 101025. PMID 34977672 DOI: 10.1016/j.xpro.2021.101025 |
0.763 |
|
| 2021 |
Nam HI, Shahzad Z, Dorone Y, Clowez S, Zhao K, Bouain N, Lay-Pruitt KS, Cho H, Rhee SY, Rouached H. Interdependent iron and phosphorus availability controls photosynthesis through retrograde signaling. Nature Communications. 12: 7211. PMID 34893639 DOI: 10.1038/s41467-021-27548-2 |
0.75 |
|
| 2021 |
Zhao K, Kong D, Jin B, Smolke CD, Rhee SY. A novel form of bivalent chromatin associates with rapid induction of camalexin biosynthesis genes in response to a pathogen signal in Arabidopsis. Elife. 10. PMID 34523419 DOI: 10.7554/eLife.69508 |
0.766 |
|
| 2021 |
Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, ... ... Rhee SY, et al. Vision, challenges and opportunities for a Plant Cell Atlas. Elife. 10. PMID 34491200 DOI: 10.7554/eLife.66877 |
0.314 |
|
| 2021 |
Hawkins C, Ginzburg D, Zhao K, Dwyer W, Xue B, Xu A, Rice S, Cole B, Paley S, Karp P, Rhee SY. Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. Journal of Integrative Plant Biology. PMID 34403192 DOI: 10.1111/jipb.13163 |
0.78 |
|
| 2021 |
Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, et al. Plant single-cell solutions for energy and the environment. Communications Biology. 4: 962. PMID 34385583 DOI: 10.1038/s42003-021-02477-4 |
0.626 |
|
| 2021 |
Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, ... ... Rhee SY, et al. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. Cell. PMID 34233164 DOI: 10.1016/j.cell.2021.06.009 |
0.738 |
|
| 2021 |
Kang SH, Pandey RP, Lee CM, Sim JS, Jeong JT, Choi BS, Jung M, Ginzburg D, Zhao K, Won SY, Oh TJ, Yu Y, Kim NH, Lee OR, Lee TH, ... ... Rhee SY, et al. Author Correction: Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. Nature Communications. 12: 1665. PMID 33686081 DOI: 10.1038/s41467-021-21987-7 |
0.73 |
|
| 2020 |
Kang SH, Pandey RP, Lee CM, Sim JS, Jeong JT, Choi BS, Jung M, Ginzburg D, Zhao K, Won SY, Oh TJ, Yu Y, Kim NH, Lee OR, Lee TH, ... ... Rhee SY, et al. Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. Nature Communications. 11: 5875. PMID 33208749 DOI: 10.1038/s41467-020-19681-1 |
0.78 |
|
| 2020 |
Rice S, Fryer E, Ghosh Jha S, Malkovskiy A, Meyer H, Thomas J, Weizbauer R, Zhao K, Birnbaum K, Ehrhardt D, Wang Z, Rhee SY. First plant cell atlas workshop report. Plant Direct. 4: e00271. PMID 33083684 DOI: 10.1002/pld3.271 |
0.777 |
|
| 2020 |
Lin F, Lazarus EZ, Rhee SY. QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants. G3 (Bethesda, Md.). PMID 32430305 DOI: 10.1534/G3.120.401122 |
0.402 |
|
| 2019 |
Bouain N, Korte A, Satbhai SB, Nam HI, Rhee SY, Busch W, Rouached H. Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation. Plos Genetics. 15: e1008392. PMID 31693663 DOI: 10.1371/Journal.Pgen.1008392 |
0.359 |
|
| 2019 |
Lin F, Fan J, Rhee SY. QTG-Finder: A Machine-Learning Based Algorithm To Prioritize Causal Genes of Quantitative Trait Loci in Arabidopsis and Rice. G3 (Bethesda, Md.). PMID 31358562 DOI: 10.1534/G3.119.400319 |
0.383 |
|
| 2019 |
Rhee SY, Birnbaum KD, Ehrhardt DW. Towards Building a Plant Cell Atlas. Trends in Plant Science. PMID 30777643 DOI: 10.1016/J.Tplants.2019.01.006 |
0.398 |
|
| 2019 |
Banf M, Zhao K, Rhee SY. METACLUSTER - an R package for context-specific expression analysis of metabolic gene clusters. Bioinformatics (Oxford, England). PMID 30657869 DOI: 10.1093/Bioinformatics/Btz021 |
0.766 |
|
| 2017 |
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, ... ... Rhee S, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490 |
0.588 |
|
| 2017 |
Bossi F, Fan J, Xiao J, Chandra L, Shen M, Dorone Y, Wagner D, Rhee SY. Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction. Bmc Genomics. 18: 480. PMID 28651538 DOI: 10.1186/S12864-017-3853-9 |
0.728 |
|
| 2017 |
Chavali AK, Rhee SY. Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites. Briefings in Bioinformatics. PMID 28398567 DOI: 10.1093/Bib/Bbx020 |
0.388 |
|
| 2017 |
Schlapfer P, Zhang P, Wang C, Kim T, Banf M, Chae L, Dreher K, Chavali AK, Nilo-Poyanco R, Bernard T, Kahn D, Rhee SY. Genome-wide prediction of metabolic enzymes, pathways and gene clusters in plants. Plant Physiology. PMID 28228535 DOI: 10.1104/Pp.16.01942 |
0.438 |
|
| 2017 |
Banf M, Rhee SY. Enhancing gene regulatory network inference through data integration with markov random fields. Scientific Reports. 7: 41174. PMID 28145456 DOI: 10.1038/Srep41174 |
0.35 |
|
| 2017 |
Rouached H, Rhee SY. System-level understanding of plant mineral nutrition in the big data era Current Opinion in Systems Biology. 4: 71-77. DOI: 10.1016/J.Coisb.2017.07.008 |
0.413 |
|
| 2016 |
Walsh JR, Schaeffer ML, Zhang P, Rhee SY, Dickerson JA, Sen TZ. The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. Bmc Systems Biology. 10: 129. PMID 27899149 DOI: 10.1186/S12918-016-0369-X |
0.353 |
|
| 2016 |
Zheng Y, Jiao C, Sun H, Rosli HG, Pombo MA, Zhang P, Banf M, Dai X, Martin GB, Giovannoni JJ, Zhao PX, Rhee SY, Fei Z. iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases. Molecular Plant. PMID 27717919 DOI: 10.1016/J.Molp.2016.09.014 |
0.379 |
|
| 2016 |
Banf M, Rhee SY. Computational inference of gene regulatory networks: approaches, limitations and opportunities. Biochimica Et Biophysica Acta. PMID 27641093 DOI: 10.1016/J.Bbagrm.2016.09.003 |
0.379 |
|
| 2016 |
Rhee SY, Parker JE, Mockler TC. A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor. Genome Biology. 17: 3. PMID 26754022 DOI: 10.1186/S13059-016-0870-Y |
0.433 |
|
| 2015 |
de Klein N, Magnani E, Banf M, Rhee SY. microProtein Prediction Program (miP3): A Software for Predicting microProteins and Their Target Transcription Factors. International Journal of Genomics. 2015: 734147. PMID 26060811 DOI: 10.1155/2015/734147 |
0.32 |
|
| 2015 |
Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. Bmc Bioinformatics. 16: 44. PMID 25886899 DOI: 10.1186/S12859-015-0474-7 |
0.482 |
|
| 2015 |
Ladics GS, Bartholomaeus A, Bregitzer P, Doerrer NG, Gray A, Holzhauser T, Jordan M, Keese P, Kok E, Macdonald P, Parrott W, Privalle L, Raybould A, Rhee SY, Rice E, et al. Genetic basis and detection of unintended effects in genetically modified crop plants. Transgenic Research. PMID 25716164 DOI: 10.1007/S11248-015-9867-7 |
0.379 |
|
| 2015 |
Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network. Plant Physiology. 167: 1685-98. PMID 25670818 DOI: 10.1104/Pp.114.252361 |
0.353 |
|
| 2014 |
Xu M, Rhee SY. Becoming data-savvy in a big-data world. Trends in Plant Science. 19: 619-22. PMID 25213119 DOI: 10.1016/J.Tplants.2014.08.003 |
0.306 |
|
| 2014 |
Jones AM, Xuan Y, Xu M, Wang RS, Ho CH, Lalonde S, You CH, Sardi MI, Parsa SA, Smith-Valle E, Su T, Frazer KA, Pilot G, Pratelli R, Grossmann G, ... ... Rhee SY, et al. Border control--a membrane-linked interactome of Arabidopsis. Science (New York, N.Y.). 344: 711-6. PMID 24833385 DOI: 10.1126/Science.1251358 |
0.406 |
|
| 2014 |
Chae L, Kim T, Nilo-Poyanco R, Rhee SY. Genomic signatures of specialized metabolism in plants Science. 344: 510-513. PMID 24786077 DOI: 10.1126/Science.1252076 |
0.414 |
|
| 2014 |
Magnani E, de Klein N, Nam HI, Kim JG, Pham K, Fiume E, Mudgett MB, Rhee SY. A comprehensive analysis of microProteins reveals their potentially widespread mechanism of transcriptional regulation. Plant Physiology. 165: 149-59. PMID 24616380 DOI: 10.1104/Pp.114.235903 |
0.391 |
|
| 2014 |
Rhee SY, Mutwil M. Towards revealing the functions of all genes in plants. Trends in Plant Science. 19: 212-21. PMID 24231067 DOI: 10.1016/J.Tplants.2013.10.006 |
0.442 |
|
| 2012 |
Bassel GW, Gaudinier A, Brady SM, Hennig L, Rhee SY, De Smet I. Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. The Plant Cell. 24: 3859-75. PMID 23110892 DOI: 10.1105/Tpc.112.100776 |
0.375 |
|
| 2012 |
Chen J, Lalonde S, Obrdlik P, Noorani Vatani A, Parsa SA, Vilarino C, Revuelta JL, Frommer WB, Rhee SY. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Frontiers in Plant Science. 3: 124. PMID 22737156 DOI: 10.3389/Fpls.2012.00124 |
0.402 |
|
| 2012 |
Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, et al. Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Frontiers in Plant Science. 3: 15. PMID 22645570 DOI: 10.3389/Fpls.2012.00015 |
0.407 |
|
| 2012 |
Chae L, Lee I, Shin J, Rhee SY. Towards understanding how molecular networks evolve in plants. Current Opinion in Plant Biology. 15: 177-84. PMID 22280840 DOI: 10.1016/J.Pbi.2012.01.006 |
0.35 |
|
| 2011 |
Hwang S, Rhee SY, Marcotte EM, Lee I. Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network. Nature Protocols. 6: 1429-42. PMID 21886106 DOI: 10.1038/Nprot.2011.372 |
0.44 |
|
| 2010 |
Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, Parsa SA, Kim DY, Acharya BR, Stein EV, Hu HC, Villiers F, Takeda K, Yang Y, Han YS, ... ... Rhee SY, et al. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Frontiers in Physiology. 1: 24. PMID 21423366 DOI: 10.3389/Fphys.2010.00024 |
0.408 |
|
| 2010 |
Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E, Patil S, Kim TW, Ji H, Wong WH, Rhee SY, et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Developmental Cell. 19: 765-77. PMID 21074725 DOI: 10.1016/J.Devcel.2010.10.010 |
0.426 |
|
| 2010 |
Zhang P, Dreher K, Karthikeyan A, Chi A, Pujar A, Caspi R, Karp P, Kirkup V, Latendresse M, Lee C, Mueller LA, Muller R, Rhee SY. Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants. Plant Physiology. 153: 1479-91. PMID 20522724 DOI: 10.1104/Pp.110.157396 |
0.385 |
|
| 2010 |
Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, ... ... Rhee SY, et al. PlantMetabolomics.org: a web portal for plant metabolomics experiments. Plant Physiology. 152: 1807-16. PMID 20147492 DOI: 10.1104/Pp.109.151027 |
0.408 |
|
| 2010 |
Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nature Biotechnology. 28: 149-56. PMID 20118918 DOI: 10.1038/Nbt.1603 |
0.461 |
|
| 2008 |
Aceituno FF, Moseyko N, Rhee SY, Gutiérrez RA. The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. Bmc Genomics. 9: 438. PMID 18811951 DOI: 10.1186/1471-2164-9-438 |
0.428 |
|
| 2008 |
Rhee SY, Wood V, Dolinski K, Draghici S. Use and misuse of the gene ontology annotations. Nature Reviews. Genetics. 9: 509-15. PMID 18475267 DOI: 10.1038/Nrg2363 |
0.352 |
|
| 2008 |
Yoo D, Xu I, Berardini TZ, Rhee SY, Narayanasamy V, Twigger S. PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature. Current Protocols in Bioinformatics. Unit9.7. PMID 18428773 DOI: 10.1002/0471250953.Bi0907S13 |
0.327 |
|
| 2008 |
Reiser L, Rhee SY. Using the Arabidopsis Information Resource (TAIR) to find information about Arabidopsis genes. Current Protocols in Bioinformatics. Unit 1.11. PMID 18428741 DOI: 10.1002/0471250953.Bi0111S9 |
0.366 |
|
| 2008 |
Pennycooke JC, Cheng H, Roberts SM, Yang Q, Rhee SY, Stockinger EJ. The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements. Plant Molecular Biology. 67: 483-97. PMID 18415686 DOI: 10.1007/S11103-008-9333-5 |
0.369 |
|
| 2008 |
Lalonde S, Ehrhardt DW, Loqué D, Chen J, Rhee SY, Frommer WB. Molecular and cellular approaches for the detection of protein-protein interactions: latest techniques and current limitations. The Plant Journal : For Cell and Molecular Biology. 53: 610-35. PMID 18269572 DOI: 10.1111/J.1365-313X.2007.03332.X |
0.398 |
|
| 2008 |
Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, et al. The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research. 36: D449-54. PMID 18194960 DOI: 10.1093/Nar/Gkm908 |
0.465 |
|
| 2008 |
Harris MA, Deegan JI, Ireland A, Lomax J, Ashburner M, Tweedie S, Carbon S, Lewis S, Mungall C, Day-Richter J, Eilbeck K, Blake JA, Bult C, Diehl AD, Dolan M, ... ... Rhee SY, et al. The Gene Ontology project in 2008 Nucleic Acids Research. 36. PMID 17984083 DOI: 10.1093/Nar/Gkm883 |
0.369 |
|
| 2008 |
Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Research. 36: D623-31. PMID 17965431 DOI: 10.1093/Nar/Gkm900 |
0.346 |
|
| 2008 |
Berardini TZ, Hill DP, Rhee SY, Blake JA. Homeodomain proteins in mice and plants: What we know and what we don't Developmental Biology. 319: 564. DOI: 10.1016/J.Ydbio.2008.05.343 |
0.316 |
|
| 2007 |
Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, ... Rhee SY, et al. The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology. 143: 587-99. PMID 17142475 DOI: 10.1104/Pp.106.092825 |
0.478 |
|
| 2007 |
Rhee SY, Dickerson J, Xu D. Bioinformatics and its applications in plant biology. Annual Review of Plant Biology. 57: 335-60. PMID 16669765 DOI: 10.1146/Annurev.Arplant.56.032604.144103 |
0.401 |
|
| 2007 |
Fiehn O, Sumner LW, Rhee SY, Ward J, Dickerson J, Lange BM, Lane G, Roessner U, Last R, Nikolau B. Minimum reporting standards for plant biology context information in metabolomic studies Metabolomics. 3: 195-201. DOI: 10.1007/S11306-007-0068-0 |
0.443 |
|
| 2006 |
Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S. Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology. 142: 414-28. PMID 16905665 DOI: 10.1104/Pp.106.085720 |
0.448 |
|
| 2006 |
Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, ... ... Rhee SY, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231 |
0.355 |
|
| 2006 |
Li S, Ehrhardt DW, Rhee SY. Systematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins. Plant Physiology. 141: 527-39. PMID 16617091 DOI: 10.1104/Pp.106.078881 |
0.301 |
|
| 2006 |
Zimmermann P, Schildknecht B, Craigon D, Garcia-Hernandez M, Gruissem W, May S, Mukherjee G, Parkinson H, Rhee S, Wagner U, Hennig L. MIAME/Plant - adding value to plant microarrray experiments. Plant Methods. 2: 1. PMID 16401339 DOI: 10.1186/1746-4811-2-1 |
0.411 |
|
| 2006 |
Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research. 34: D511-6. PMID 16381923 DOI: 10.1093/Nar/Gkj128 |
0.4 |
|
| 2005 |
Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F. Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comparative and Functional Genomics. 6: 388-97. PMID 18629207 DOI: 10.1002/Cfg.496 |
0.457 |
|
| 2005 |
Zhang P, Foerster H, Tissier CP, Mueller L, Paley S, Karp PD, Rhee SY. MetaCyc and AraCyc. Metabolic pathway databases for plant research. Plant Physiology. 138: 27-37. PMID 15888675 DOI: 10.1104/Pp.105.060376 |
0.43 |
|
| 2005 |
Rhee SY, Crosby B. Biological databases for plant research. Plant Physiology. 138: 1-3. PMID 15888672 DOI: 10.1104/Pp.104.900158 |
0.346 |
|
| 2005 |
Bard J, Rhee SY, Ashburner M. An ontology for cell types. Genome Biology. 6: R21. PMID 15693950 DOI: 10.1186/Gb-2005-6-2-R21 |
0.36 |
|
| 2005 |
Schlueter SD, Wilkerson MD, Huala E, Rhee SY, Brendel V. Community-based gene structure annotation. Trends in Plant Science. 10: 9-14. PMID 15642518 DOI: 10.1016/J.Tplants.2004.11.002 |
0.352 |
|
| 2004 |
Zhang X, Fowler SG, Cheng H, Lou Y, Rhee SY, Stockinger EJ, Thomashow MF. Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 39: 905-19. PMID 15341633 DOI: 10.1111/J.1365-313X.2004.02176.X |
0.456 |
|
| 2004 |
Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, ... ... Rhee SY, et al. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiology. 135: 745-55. PMID 15173566 DOI: 10.1104/Pp.104.040071 |
0.66 |
|
| 2004 |
Tian GW, Mohanty A, Chary SN, Li S, Paap B, Drakakaki G, Kopec CD, Li J, Ehrhardt D, Jackson D, Rhee SY, Raikhel NV, Citovsky V. High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiology. 135: 25-38. PMID 15141064 DOI: 10.1104/Pp.104.040139 |
0.363 |
|
| 2004 |
Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller LA, Rhee SY, Stitt M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. The Plant Journal : For Cell and Molecular Biology. 37: 914-39. PMID 14996223 DOI: 10.1111/J.1365-313X.2004.02016.X |
0.399 |
|
| 2004 |
Rhee SY. Carpe Diem. Retooling the "Publish or Perish" Model into the "Share and Survive" Model Plant Physiology. 134: 543-547. PMID 14966244 DOI: 10.1104/Pp.103.035907 |
0.347 |
|
| 2003 |
Rhee SY, Osborne E, Poindexter PD, Somerville CR. Microspore Separation in the quartet 3 Mutants of Arabidopsis Is Impaired by a Defect in a Developmentally Regulated Polygalacturonase Required for Pollen Mother Cell Wall Degradation Plant Physiology. 133: 1170-1180. PMID 14551328 DOI: 10.1104/Pp.103.028266 |
0.546 |
|
| 2003 |
Mueller LA, Zhang P, Rhee SY. AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiology. 132: 453-60. PMID 12805578 DOI: 10.1104/Pp.102.017236 |
0.389 |
|
| 2003 |
Clarke B, Lambrecht M, Rhee SY. Arabidopsis genomic information for interpreting wheat EST sequences. Functional & Integrative Genomics. 3: 33-8. PMID 12590341 DOI: 10.1007/S10142-002-0075-1 |
0.377 |
|
| 2003 |
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, et al. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research. 31: 224-8. PMID 12519987 DOI: 10.1093/Nar/Gkg076 |
0.653 |
|
| 2002 |
Garcia-Hernandez M, Berardini TZ, Chen G, Crist D, Doyle A, Huala E, Knee E, Lambrecht M, Miller N, Mueller LA, Mundodi S, Reiser L, Rhee SY, Scholl R, Tacklind J, et al. TAIR: a resource for integrated Arabidopsis data. Functional & Integrative Genomics. 2: 239-53. PMID 12444417 DOI: 10.1007/S10142-002-0077-Z |
0.416 |
|
| 2002 |
Reiser L, Mueller LA, Rhee SY. Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems. Plant Molecular Biology. 48: 59-74. DOI: 10.1007/978-94-010-0448-0_5 |
0.324 |
|
| 2001 |
Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, ... ... Rhee SY, et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Research. 29: 102-5. PMID 11125061 DOI: 10.1093/Nar/29.1.102 |
0.615 |
|
| 2000 |
Rhee SY. Bioinformatic resources, challenges, and opportunities, using Arabidopsis as a model organism in a post-genomic era Plant Physiology. 124: 1460-1464. PMID 11115859 DOI: 10.1104/Pp.124.4.1460 |
0.414 |
|
| 2000 |
Rhee SY. Paternal genomic imprinting in plants Genome Biology. 1. DOI: 10.1186/Gb-2000-1-2-Reports0054 |
0.38 |
|
| 2000 |
Rhee SY. Mutagenesis of a large MYB gene family in Arabidopsis Genome Biology. 1. DOI: 10.1186/Gb-2000-1-1-Reports025 |
0.312 |
|
| 1998 |
Rhee SY, Somerville CR. Tetrad pollen formation in quartet mutants of Arabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall Plant Journal. 15: 79-88. PMID 9744097 DOI: 10.1046/J.1365-313X.1998.00183.X |
0.506 |
|
| 1995 |
Rhee SY, Somerville CR. Flat-Surface grafting in Arabidopsis thaliana Plant Molecular Biology Reporter. 13: 118-123. DOI: 10.1007/Bf02668781 |
0.531 |
|
| 1994 |
Preuss D, Rhee SY, Davis RW. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes. Science (New York, N.Y.). 264: 1458-60. PMID 8197459 DOI: 10.1126/Science.8197459 |
0.358 |
|
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