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Stefan M. Larson, Ph.D. - Publications

Affiliations: 
2004 Stanford University, Palo Alto, CA 
Area:
theoretical methods to understand the physical properties of biological molecules
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2005 Zarrine-Afsar A, Larson SM, Davidson AR. The family feud: do proteins with similar structures fold via the same pathway? Current Opinion in Structural Biology. 15: 42-9. PMID 15718132 DOI: 10.1016/J.Sbi.2005.01.011  0.472
2003 Di Nardo AA, Larson SM, Davidson AR. The relationship between conservation, thermodynamic stability, and function in the SH3 domain hydrophobic core. Journal of Molecular Biology. 333: 641-55. PMID 14556750 DOI: 10.1016/J.Jmb.2003.08.035  0.387
2003 Larson SM, Pande VS. Sequence optimization for native state stability determines the evolution and folding kinetics of a small protein. Journal of Molecular Biology. 332: 275-86. PMID 12946364 DOI: 10.1016/S0022-2836(03)00832-5  0.614
2003 Larson SM, Garg A, Desjarlais JR, Pande VS. Increased detection of structural templates using alignments of designed sequences. Proteins. 51: 390-6. PMID 12696050 DOI: 10.1002/Prot.10346  0.59
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/Bip.10219  0.314
2002 Larson SM, England JL, Desjarlais JR, Pande VS. Thoroughly sampling sequence space: large-scale protein design of structural ensembles. Protein Science : a Publication of the Protein Society. 11: 2804-13. PMID 12441379 DOI: 10.1110/Ps.0203902  0.685
2002 Larson SM, Ruczinski I, Davidson AR, Baker D, Plaxco KW. Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation. Journal of Molecular Biology. 316: 225-33. PMID 11851333 DOI: 10.1006/Jmbi.2001.5344  0.501
2001 Larson SM, Davidson AR. The identification of conserved interactions within the SH3 domain by alignment of sequences and structures. Protein Science : a Publication of the Protein Society. 9: 2170-80. PMID 11152127 DOI: 10.1110/Ps.9.11.2170  0.385
2000 Larson SM, Di Nardo AA, Davidson AR. Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions. Journal of Molecular Biology. 303: 433-46. PMID 11031119 DOI: 10.1006/Jmbi.2000.4146  0.423
2000 Plaxco KW, Larson S, Ruczinski I, Riddle DS, Thayer EC, Buchwitz B, Davidson AR, Baker D. Evolutionary conservation in protein folding kinetics. Journal of Molecular Biology. 298: 303-12. PMID 10764599 DOI: 10.1006/Jmbi.1999.3663  0.496
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