Hamid Mirzaei, Ph.D. - Publications

Affiliations: 
2005 Purdue University, West Lafayette, IN, United States 
Area:
Analytical Chemistry

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Mirbaha H, Chen D, Morazova OA, Ruff KM, Sharma AM, Liu X, Goodarzi M, Pappu RV, Colby DW, Mirzaei H, Joachimiak LA, Diamond MI. Inert and seed-competent tau monomers suggest structural origins of aggregation. Elife. 7. PMID 29988016 DOI: 10.7554/eLife.36584  0.64
2016 Zhang X, Funt B, Mirzaei H. Metamer mismatching in practice versus theory Journal of the Optical Society of America a: Optics and Image Science, and Vision. 33: A238-A247. DOI: 10.1364/JOSAA.33.00A238  0.52
2016 Zhang X, Funt B, Mirzaei H. Metamer Mismatching and Its Consequences for Predicting How Colours are Affected by the Illuminant Proceedings of the Ieee International Conference On Computer Vision. 2016: 34-40. DOI: 10.1109/ICCVW.2015.14  0.52
2015 Mirzaei H, Funt B. Gaussian-Based Hue Descriptors. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 2441-50. PMID 26539849 DOI: 10.1109/TPAMI.2015.2420560  0.52
2015 Wands AM, Fujita A, McCombs JE, Cervin J, Dedic B, Rodriguez AC, Nischan N, Bond MR, Mettlen M, Trudgian DC, Lemoff A, Quiding-Järbrink M, Gustavsson B, Steentoft C, Clausen H, ... Mirzaei H, et al. Fucosylation and protein glycosylation create functional receptors for cholera toxin. Elife. 4. PMID 26512888 DOI: 10.7554/eLife.09545  0.8
2015 Logvinenko AD, Funt B, Mirzaei H, Tokunaga R. Rethinking Colour Constancy. Plos One. 10: e0135029. PMID 26356217 DOI: 10.1371/journal.pone.0135029  0.52
2015 Salomon D, Klimko JA, Trudgian DC, Kinch LN, Grishin NV, Mirzaei H, Orth K. Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria. Plos Pathogens. 11: e1005128. PMID 26305100 DOI: 10.1371/journal.ppat.1005128  0.8
2015 Katafuchi T, Esterházy D, Lemoff A, Ding X, Sondhi V, Kliewer SA, Mirzaei H, Mangelsdorf DJ. Detection of FGF15 in plasma by stable isotope standards and capture by anti-peptide antibodies and targeted mass spectrometry. Cell Metabolism. 21: 898-904. PMID 26039452 DOI: 10.1016/j.cmet.2015.05.004  0.8
2015 Shahdadi F, Mirzaei HO, Daraei Garmakhany A. Study of phenolic compound and antioxidant activity of date fruit as a function of ripening stages and drying process. Journal of Food Science and Technology. 52: 1814-9. PMID 25745262 DOI: 10.1007/s13197-013-1177-6  0.52
2015 Mirzaei H, Funt B. Robust chroma and lightness descriptors Final Program and Proceedings - Is and T/Sid Color Imaging Conference. 2015: 75-78.  0.52
2014 Wang G, Han T, Nijhawan D, Theodoropoulos P, Naidoo J, Yadavalli S, Mirzaei H, Pieper AA, Ready JM, McKnight SL. P7C3 neuroprotective chemicals function by activating the rate-limiting enzyme in NAD salvage. Cell. 158: 1324-34. PMID 25215490 DOI: 10.1016/j.cell.2014.07.040  0.8
2014 Mirzaei H, Funt B. Object-color-signal prediction using wraparound Gaussian metamers. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 31: 1680-7. PMID 25121457 DOI: 10.1364/JOSAA.31.001680  0.52
2014 Salomon D, Kinch LN, Trudgian DC, Guo X, Klimko JA, Grishin NV, Mirzaei H, Orth K. Marker for type VI secretion system effectors. Proceedings of the National Academy of Sciences of the United States of America. 111: 9271-6. PMID 24927539 DOI: 10.1073/pnas.1406110111  0.8
2014 Trudgian DC, Fischer R, Guo X, Kessler BM, Mirzaei H. GOAT--a simple LC-MS/MS gradient optimization tool. Proteomics. 14: 1467-71. PMID 24723505 DOI: 10.1002/pmic.201300524  0.8
2014 Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H. Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics. Molecular & Cellular Proteomics : McP. 13: 1573-84. PMID 24696503 DOI: 10.1074/mcp.M113.035170  0.8
2014 Funt B, Mirzaei H, Logvinenko AD. Metamer mismatch volumes of flat grey Final Program and Proceedings - Is and T/Sid Color Imaging Conference. 2014: 240-241.  0.52
2014 Mirzaei H, Funt B. Gaussian illuminants and reflectances for colour signal prediction Final Program and Proceedings - Is and T/Sid Color Imaging Conference. 2014: 212-216.  0.52
2013 Kwon I, Kato M, Xiang S, Wu L, Theodoropoulos P, Mirzaei H, Han T, Xie S, Corden JL, McKnight SL. Phosphorylation-regulated binding of RNA polymerase II to fibrous polymers of low-complexity domains. Cell. 155: 1049-60. PMID 24267890 DOI: 10.1016/j.cell.2013.10.033  0.8
2013 Sengupta S, Lorente-Rodríguez A, Earnest S, Stippec S, Guo X, Trudgian DC, Mirzaei H, Cobb MH. Regulation of OSR1 and the sodium, potassium, two chloride cotransporter by convergent signals. Proceedings of the National Academy of Sciences of the United States of America. 110: 18826-31. PMID 24191005 DOI: 10.1073/pnas.1318676110  0.8
2013 Chang KH, Li R, Kuri B, Lotan Y, Roehrborn CG, Liu J, Vessella R, Nelson PS, Kapur P, Guo X, Mirzaei H, Auchus RJ, Sharifi N. A gain-of-function mutation in DHT synthesis in castration-resistant prostate cancer. Cell. 154: 1074-84. PMID 23993097 DOI: 10.1016/j.cell.2013.07.029  0.8
2013 Laxman S, Sutter BM, Wu X, Kumar S, Guo X, Trudgian DC, Mirzaei H, Tu BP. Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolation. Cell. 154: 416-29. PMID 23870129 DOI: 10.1016/j.cell.2013.06.043  0.8
2013 Mirzaei H, Knijnenburg TA, Kim B, Robinson M, Picotti P, Carter GW, Li S, Dilworth DJ, Eng JK, Aitchison JD, Shmulevich I, Galitski T, Aebersold R, Ranish J. Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 3645-50. PMID 23388641 DOI: 10.1073/pnas.1216918110  0.8
2013 Sun Q, Carrasco YP, Hu Y, Guo X, Mirzaei H, Macmillan J, Chook YM. Nuclear export inhibition through covalent conjugation and hydrolysis of Leptomycin B by CRM1. Proceedings of the National Academy of Sciences of the United States of America. 110: 1303-8. PMID 23297231 DOI: 10.1073/pnas.1217203110  0.8
2013 Mirzaei H, Hui HT. Alternative A-gate structures for the realization of semiconductor quantum computers Journal of Applied Physics. 113. DOI: 10.1063/1.4800621  0.52
2013 Mirzaei H, Tang L, Werner R, Hamarneh G. Decision forests with spatio-temporal features for graph-based tumor segmentation in 4D lung CT Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8184: 179-186. DOI: 10.1007/978-3-319-02267-3_23  0.52
2013 Mirzaei H, Funt B. A robust hue descriptor Final Program and Proceedings - Is and T/Sid Color Imaging Conference. 75-78.  0.52
2012 Trudgian DC, Mirzaei H. Cloud CPFP: a shotgun proteomics data analysis pipeline using cloud and high performance computing. Journal of Proteome Research. 11: 6282-90. PMID 23088505 DOI: 10.1021/pr300694b  0.8
2012 Han TW, Kato M, Xie S, Wu LC, Mirzaei H, Pei J, Chen M, Xie Y, Allen J, Xiao G, McKnight SL. Cell-free formation of RNA granules: bound RNAs identify features and components of cellular assemblies. Cell. 149: 768-79. PMID 22579282 DOI: 10.1016/j.cell.2012.04.016  0.8
2012 Kato M, Han TW, Xie S, Shi K, Du X, Wu LC, Mirzaei H, Goldsmith EJ, Longgood J, Pei J, Grishin NV, Frantz DE, Schneider JW, Chen S, Li L, et al. Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell. 149: 753-67. PMID 22579281 DOI: 10.1016/j.cell.2012.04.017  0.8
2011 Sun KH, Chang KH, Clawson S, Ghosh S, Mirzaei H, Regnier F, Shah K. Glutathione-S-transferase P1 is a critical regulator of Cdk5 kinase activity. Journal of Neurochemistry. 118: 902-14. PMID 21668448 DOI: 10.1111/j.1471-4159.2011.07343.x  0.8
2011 Hui HT, Mirzaei H. Theoretical calculation of the magnetic resonance frequency of the electron spin embedded inside a silicon host for solid-state quantum computing Ieee Transactions On Electron Devices. 58: 512-516. DOI: 10.1109/TED.2010.2089988  0.52
2011 Mirzaei H, Hui HT. Electromganetic field control of electron spin magnetic resonance frequency in silicon donors for solid-state quantum computing Ieee Antennas and Propagation Society, Ap-S International Symposium (Digest). 1601-1604. DOI: 10.1109/APS.2011.5996607  0.52
2011 Funt B, Mirzaei H. Intersecting color manifolds Final Program and Proceedings - Is and T/Sid Color Imaging Conference. 166-170.  0.52
2010 Mirzaei H, Rogers RS, Grimes B, Eng J, Aderem A, Aebersold R. Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry. Molecular Biosystems. 6: 2004-14. PMID 20694217 DOI: 10.1039/c005242f  0.8
2010 Jones AR, Carroll K, Knight D, MacLellan K, Domann PJ, Legido-Quigley C, Huang L, Smallshaw L, Mirzaei H, Shofstahl J, Paton NW. Guidelines for reporting the use of column chromatography in proteomics Nature Biotechnology. 28: 654. PMID 20622829 DOI: 10.1038/nbt0710-654a  0.8
2010 Dilworth DJ, Saleem RA, Rogers RS, Mirzaei H, Boyle J, Aitchison JD. QTIPS: a novel method of unsupervised determination of isotopic amino acid distribution in SILAC experiments. Journal of the American Society For Mass Spectrometry. 21: 1417-22. PMID 20451407 DOI: 10.1016/j.jasms.2010.04.002  0.8
2010 Cai W, Hassani M, Karki R, Walter ED, Koelsch KH, Seradj H, Lineswala JP, Mirzaei H, York JS, Olang F, Sedighi M, Lucas JS, Eads TJ, Rose AS, Charkhzarrin S, et al. Synthesis, metabolism and in vitro cytotoxicity studies on novel lavendamycin antitumor agents. Bioorganic & Medicinal Chemistry. 18: 1899-909. PMID 20149966 DOI: 10.1016/j.bmc.2010.01.037  0.8
2010 Mirzaei H. A novel multi-view agglomerative clustering algorithm based on ensemble of partitions on different views Proceedings - International Conference On Pattern Recognition. 1007-1010. DOI: 10.1109/ICPR.2010.252  0.52
2010 Mirzaei H, Hui HT. On the nuclear magnetic resonance frequency of phosphorus donor atom in a silicon-based quantum computer Journal of Applied Physics. 108. DOI: 10.1063/1.3504653  0.52
2010 Mirzaei H, Hui HT, Lui HS. Numerical determination of nuclear magnetic resonance frequency of the single-qubit operation in kane's quantum computer Asia-Pacific Microwave Conference Proceedings, Apmc. 2172-2175.  0.52
2010 Soltani S, Mirzaei H, Mirzaei A. On-line verification of signatures by fitting a generated aggregation operator to empirical data International Conference On Artificial Intelligence and Pattern Recognition 2010, Aipr 2010. 286-291.  0.52
2009 Mirzaei H, Brusniak MY, Mueller LN, Letarte S, Watts JD, Aebersold R. Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry. Molecular & Cellular Proteomics : McP. 8: 1934-46. PMID 19411281 DOI: 10.1074/mcp.M800569-MCP200  0.8
2009 Sherwood CA, Eastham A, Lee LW, Risler J, Mirzaei H, Falkner JA, Martin DB. Rapid optimization of MRM-MS instrument parameters by subtle alteration of precursor and product m/z targets Journal of Proteome Research. 8: 3746-3751. PMID 19405522 DOI: 10.1021/pr801122b  0.8
2009 Pan S, Chen R, Reimel BA, Crispin DA, Mirzaei H, Cooke K, Coleman JF, Lane Z, Bronner MP, Goodlett DR, McIntosh MW, Traverso W, Aebersold R, Brentnall TA. Quantitative proteomics investigation of pancreatic intraepithelial neoplasia. Electrophoresis. 30: 1132-44. PMID 19373808 DOI: 10.1002/elps.200800752  0.8
2009 Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, JeBailey L, Goodlett DR, McIntosh M, Aebersold R, Rabinovitch PS, Chen R. Proteins that underlie neoplastic progression of ulcerative colitis Proteomics - Clinical Applications. 3: 1326-1337. DOI: 10.1002/prca.200900061  0.8
2008 Picotti P, Lam H, Campbell D, Deutsch EW, Mirzaei H, Ranish J, Domon B, Aebersold R. A database of mass spectrometric assays for the yeast proteome. Nature Methods. 5: 913-4. PMID 18974732 DOI: 10.1038/nmeth1108-913  0.8
2008 Mirzaei H, Regnier F. Protein:protein aggregation induced by protein oxidation. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 873: 8-14. PMID 18760979 DOI: 10.1016/j.jchromb.2008.04.025  0.8
2008 Pierce A, Mirzaei H, Muller F, De Waal E, Taylor AB, Leonard S, Van Remmen H, Regnier F, Richardson A, Chaudhuri A. GAPDH is conformationally and functionally altered in association with oxidative stress in mouse models of amyotrophic lateral sclerosis. Journal of Molecular Biology. 382: 1195-210. PMID 18706911 DOI: 10.1016/j.jmb.2008.07.088  0.8
2008 Mirzaei H, Baena B, Barbas C, Regnier FE. Identification of oxidized proteins in rat plasma using avidin chromatography and tandem mass spectrometry Proteomics. 8: 1516-1527. PMID 18383005 DOI: 10.1002/pmic.200700363  0.8
2008 Mirzaei H, McBee JK, Watts J, Aebersold R. Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Molecular & Cellular Proteomics : McP. 7: 813-23. PMID 18089551 DOI: 10.1074/mcp.M700495-MCP200  0.8
2008 Mirzaei H. Identification of oxidized proteins in rat plasma using avidin chromatography and tandem mass spectrometry (Proteomics 8, 7, (1516-1527) DOI: 10.1002/pmic.200700363) Proteomics. 8: 2764-2771. DOI: 10.1002/pmic.200890044  0.8
2007 Hulleman JD, Mirzaei H, Guigard E, Taylor KL, Ray SS, Kay CM, Regnier FE, Rochet JC. Destabilization of DJ-1 by familial substitution and oxidative modifications: implications for Parkinson's disease. Biochemistry. 46: 5776-89. PMID 17451229 DOI: 10.1021/bi7001778  0.8
2007 Mirzaei H, Regnier F. Identification of yeast oxidized proteins: chromatographic top-down approach for identification of carbonylated, fragmented and cross-linked proteins in yeast. Journal of Chromatography. A. 1141: 22-31. PMID 17188699 DOI: 10.1016/j.chroma.2006.11.009  0.8
2007 Oh C, Zak SH, Mirzaei H, Buck C, Regnier FE, Zhang X. Neural network prediction of peptide separation in strong anion exchange chromatography. Bioinformatics (Oxford, England). 23: 114-8. PMID 17092987 DOI: 10.1093/bioinformatics/btl561  0.8
2006 Mirzaei H, Regnier F. Protein-RNA cross-linking in the ribosomes of yeast under oxidative stress. Journal of Proteome Research. 5: 3249-59. PMID 17137326 DOI: 10.1021/pr060337l  0.8
2006 Pevtsov S, Fedulova I, Mirzaei H, Buck C, Zhang X. Performance evaluation of existing de novo sequencing algorithms. Journal of Proteome Research. 5: 3018-28. PMID 17081053 DOI: 10.1021/pr060222h  0.8
2006 Mirzaei H, Regnier F. Identification and quantification of protein carbonylation using light and heavy isotope labeled Girard's P reagent. Journal of Chromatography. A. 1134: 122-33. PMID 16996067 DOI: 10.1016/j.chroma.2006.08.096  0.8
2006 Mirzaei H, Regnier F. Creation of allotypic active sites during oxidative stress. Journal of Proteome Research. 5: 2159-68. PMID 16944927 DOI: 10.1021/pr060021d  0.8
2006 Yang WC, Mirzaei H, Liu X, Regnier FE. Enhancement of amino acid detection and quantification by electrospray ionization mass spectrometry. Analytical Chemistry. 78: 4702-8. PMID 16808485 DOI: 10.1021/ac0600510  0.8
2006 Mirzaei H, Regnier F. Enhancing electrospray ionization efficiency of peptides by derivatization. Analytical Chemistry. 78: 4175-83. PMID 16771548 DOI: 10.1021/ac0602266  0.8
2006 Mirzaei H, Schieler JL, Rochet JC, Regnier F. Identification of rotenone-induced modifications in alpha-synuclein using affinity pull-down and tandem mass spectrometry. Analytical Chemistry. 78: 2422-31. PMID 16579629 DOI: 10.1021/ac051978n  0.8
2006 Mirzaei H, Regnier F. Enrichment of carbonylated peptides using Girard P reagent and strong cation exchange chromatography. Analytical Chemistry. 78: 770-8. PMID 16448050 DOI: 10.1021/ac0514220  0.8
2005 Mirzaei H, Regnier F. Affinity chromatographic selection of carbonylated proteins followed by identification of oxidation sites using tandem mass spectrometry. Analytical Chemistry. 77: 2386-92. PMID 15828771 DOI: 10.1021/ac0484373  0.8
2005 Mirzaei H, Regnier F. Structure specific chromatographic selection in targeted proteomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 817: 23-34. PMID 15680786 DOI: 10.1016/j.jchromb.2004.08.028  0.8
2003 Ren D, Penner NA, Slentz BE, Mirzaei H, Regnier F. Evaluating immobilized metal affinity chromatography for the selection of histidine-containing peptides in comparative proteomics. Journal of Proteome Research. 2: 321-9. PMID 12814271 DOI: 10.1021/pr034006+  0.8
Show low-probability matches.