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Jillian F. Banfield - Publications

Affiliations: 
Earth and Planetary Science, Environmental Science University of California, Berkeley, Berkeley, CA 
Area:
Mineralogy, environmental geochemistry, geomicrobiology, and nanogeoscience
Website:
http://eps.berkeley.edu/development/view_person.php?uid=185017&page=25

274 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Arbour TJ, Gilbert B, Banfield JF. Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities. Frontiers in Microbiology. 11: 1694. PMID 32849356 DOI: 10.3389/fmicb.2020.01694  0.4
2020 Méheust R, Castelle CJ, Matheus Carnevali PB, Farag IF, He C, Chen LX, Amano Y, Hug LA, Banfield JF. Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog. The Isme Journal. PMID 32681159 DOI: 10.1038/s41396-020-0716-1  0.32
2020 Mu A, Thomas BC, Banfield JF, Moreau JW. Subsurface carbon monoxide oxidation capacity revealed through genome-resolved metagenomics of a carboxydotroph. Environmental Microbiology Reports. PMID 32633030 DOI: 10.1111/1758-2229.12868  0.48
2020 Jaffe AL, Castelle CJ, Matheus Carnevali PB, Gribaldo S, Banfield JF. The rise of diversity in metabolic platforms across the Candidate Phyla Radiation. Bmc Biology. 18: 69. PMID 32560683 DOI: 10.1186/s12915-020-00804-5  0.32
2020 Gionfriddo CM, Stott MB, Power JF, Ogorek JM, Krabbenhoft DP, Wick R, Holt K, Chen LX, Thomas BC, Banfield JF, Moreau JW. Genome-resolved metagenomics and detailed geochemical speciation analyses yield new insights into microbial mercury cycling in geothermal springs. Applied and Environmental Microbiology. PMID 32414793 DOI: 10.1128/AEM.00176-20  0.48
2020 Probst AJ, Elling FJ, Castelle CJ, Zhu Q, Elvert M, Birarda G, Holman HN, Lane KR, Ladd B, Ryan MC, Woyke T, Hinrichs KU, Banfield JF. Lipid analysis of CO-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria. The Isme Journal. PMID 32203118 DOI: 10.1038/s41396-020-0624-4  0.32
2020 Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, ... ... Banfield JF, et al. Clades of huge phages from across Earth's ecosystems. Nature. PMID 32051592 DOI: 10.1038/s41586-020-2007-4  0.32
2019 Sieber CMK, Paul BG, Castelle CJ, Hu P, Tringe SG, Valentine DL, Andersen GL, Banfield JF. Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community. Mbio. 10. PMID 31719174 DOI: 10.1128/mBio.02128-19  0.32
2019 Whittaker ML, Lammers LN, Carrero S, Gilbert B, Banfield JF. Ion exchange selectivity in clay is controlled by nanoscale chemical-mechanical coupling. Proceedings of the National Academy of Sciences of the United States of America. PMID 31619569 DOI: 10.1073/pnas.1908086116  0.4
2019 Méheust R, Burstein D, Castelle CJ, Banfield JF. The distinction of CPR bacteria from other bacteria based on protein family content. Nature Communications. 10: 4173. PMID 31519891 DOI: 10.1038/s41467-019-12171-z  0.32
2019 Schwank K, Bornemann TLV, Dombrowski N, Spang A, Banfield JF, Probst AJ. An archaeal symbiont-host association from the deep terrestrial subsurface. The Isme Journal. PMID 31048756 DOI: 10.1038/s41396-019-0421-0  0.32
2019 Watts MP, Spurr LP, Lê Cao KA, Wick R, Banfield JF, Moreau JW. Genome-resolved metagenomics of an autotrophic thiocyanate-remediating microbial bioreactor consortium. Water Research. 158: 106-117. PMID 31022528 DOI: 10.1016/j.watres.2019.02.058  0.48
2019 Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, ... Banfield JF, et al. Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature Communications. 10: 1451. PMID 30914645 DOI: 10.1038/s41467-019-09423-3  0.32
2019 Bouma-Gregson K, Olm MR, Probst AJ, Anantharaman K, Power ME, Banfield JF. Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network. The Isme Journal. PMID 30809011 DOI: 10.1038/s41396-019-0374-3  0.32
2019 Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, ... Banfield JF, et al. Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature Communications. 10: 463. PMID 30692531 DOI: 10.1038/s41467-018-08246-y  0.32
2018 Jaffe AL, Castelle CJ, Dupont CL, Banfield JF. Lateral gene transfer shapes the distribution of RuBisCO among Candidate Phyla Radiation bacteria and DPANN archaea. Molecular Biology and Evolution. PMID 30544151 DOI: 10.1093/molbev/msy234  0.32
2018 Wu D, Shen N, Lin X, Chen X. Prepubertal testicular tumors in China: a 10-year experience with 67 cases. Pediatric Surgery International. PMID 30324570 DOI: 10.1007/s00383-018-4366-6  0.36
2018 Castelle CJ, Brown CT, Anantharaman K, Probst AJ, Huang RH, Banfield JF. Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations. Nature Reviews. Microbiology. PMID 30181663 DOI: 10.1038/s41579-018-0076-2  0.32
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Banfield JF, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/nbt0718-660a  0.88
2018 Starr EP, Shi S, Blazewicz SJ, Probst AJ, Herman DJ, Firestone MK, Banfield JF. Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon. Microbiome. 6: 122. PMID 29970182 DOI: 10.1186/s40168-018-0499-z  0.32
2018 Liu X, Li M, Castelle CJ, Probst AJ, Zhou Z, Pan J, Liu Y, Banfield JF, Gu JD. Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages. Microbiome. 6: 102. PMID 29884244 DOI: 10.1186/s40168-018-0488-2  0.32
2018 Sieber CMK, Probst AJ, Sharrar A, Thomas BC, Hess M, Tringe SG, Banfield JF. Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy. Nature Microbiology. PMID 29807988 DOI: 10.1038/s41564-018-0171-1  0.32
2018 Probst AJ, Banfield JF. Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism. Genome Biology and Evolution. 10: 1115-1119. PMID 29672704 DOI: 10.1093/gbe/evy067  0.32
2018 Castelle CJ, Banfield JF. Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life. Cell. 172: 1181-1197. PMID 29522741 DOI: 10.1016/j.cell.2018.02.016  0.32
2018 West PT, Probst AJ, Grigoriev IV, Thomas BC, Banfield JF. Genome-reconstruction for eukaryotes from complex natural microbial communities. Genome Research. PMID 29496730 DOI: 10.1101/gr.228429.117  0.32
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Banfield JF, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/nbt0218-196a  0.88
2018 Probst AJ, Ladd B, Jarett JK, Geller-McGrath DE, Sieber CMK, Emerson JB, Anantharaman K, Thomas BC, Malmstrom RR, Stieglmeier M, Klingl A, Woyke T, Ryan MC, Banfield JF. Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface. Nature Microbiology. PMID 29379208 DOI: 10.1038/s41564-017-0098-y  0.32
2017 Probst AJ, Hu P, Sun CL, Dubinsky EA, Sieber CMK, Banfield JF, Andersen GL. Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill. Proceedings of the National Academy of Sciences of the United States of America. 114: E8950-E8952. PMID 29073089 DOI: 10.1073/pnas.1712466114  0.32
2017 Ino K, Hernsdorf AW, Konno U, Kouduka M, Yanagawa K, Kato S, Sunamura M, Hirota A, Togo YS, Ito K, Fukuda A, Iwatsuki T, Mizuno T, Komatsu DD, Tsunogai U, ... ... Banfield JF, et al. Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment. The Isme Journal. PMID 28885627 DOI: 10.1038/ismej.2017.140  1
2017 Finstad KM, Probst AJ, Thomas BC, Andersen GL, Demergasso C, Echeverría A, Amundson RG, Banfield JF. Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics. Frontiers in Microbiology. 8: 1435. PMID 28804480 DOI: 10.3389/fmicb.2017.01435  0.32
2017 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Banfield JF, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/nbt.3893  0.88
2017 Hu P, Dubinsky EA, Probst AJ, Wang J, Sieber CMK, Tom LM, Gardinali PR, Banfield JF, Atlas RM, Andersen GL. Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proceedings of the National Academy of Sciences of the United States of America. PMID 28652349 DOI: 10.1073/pnas.1703424114  0.32
2017 Paul BG, Burstein D, Castelle CJ, Handa S, Arambula D, Czornyj E, Thomas BC, Ghosh P, Miller JF, Banfield JF, Valentine DL. Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea. Nature Microbiology. 2: 17045. PMID 28368387 DOI: 10.1038/nmicrobiol.2017.45  0.32
2017 Hernsdorf AW, Amano Y, Miyakawa K, Ise K, Suzuki Y, Anantharaman K, Probst A, Burstein D, Thomas BC, Banfield JF. Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments. The Isme Journal. PMID 28350393 DOI: 10.1038/ismej.2017.39  1
2017 Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. PMID 28077874 DOI: 10.1038/nature21031  0.6
2017 Castelle CJ, Brown CT, Thomas BC, Williams KH, Banfield JF. Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation. Scientific Reports. 7: 40101. PMID 28067254 DOI: 10.1038/srep40101  0.32
2016 Burstein D, Harrington LB, Strutt SC, Probst AJ, Anantharaman K, Thomas BC, Doudna JA, Banfield JF. New CRISPR-Cas systems from uncultivated microbes. Nature. PMID 28005056 DOI: 10.1038/nature21059  0.32
2016 Tester CC, Aloni S, Gilbert B, Banfield JF. Short- and Long-Range Attractive Forces That Influence the Structure of Montmorillonite Osmotic Hydrates. Langmuir : the Acs Journal of Surfaces and Colloids. 32: 12039-12046. PMID 27933879 DOI: 10.1021/acs.langmuir.6b03265  0.4
2016 Butterfield CN, Li Z, Andeer PF, Spaulding S, Thomas BC, Singh A, Hettich RL, Suttle KB, Probst AJ, Tringe SG, Northen T, Pan C, Banfield JF. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. Peerj. 4: e2687. PMID 27843720 DOI: 10.7717/peerj.2687  0.32
2016 Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nature Communications. 7: 13219. PMID 27774985 DOI: 10.1038/ncomms13219  0.32
2016 Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, ... ... Banfield JF, et al. A new view of the tree of life. Nature Microbiology. 1: 16048. PMID 27572647 DOI: 10.1038/nmicrobiol.2016.48  1
2016 Licina D, Bhangar S, Brooks B, Baker R, Firek B, Tang X, Morowitz MJ, Banfield JF, Nazaroff WW. Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit. Plos One. 11: e0154991. PMID 27175913 DOI: 10.1371/journal.pone.0154991  1
2016 Long PE, Williams KH, Hubbard SS, Banfield JF. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes. Trends in Microbiology. PMID 27156744 DOI: 10.1016/j.tim.2016.04.006  1
2016 Wrighton KC, Castelle CJ, Varaljay VA, Satagopan S, Brown CT, Wilkins MJ, Thomas BC, Sharon I, Williams KH, Tabita FR, Banfield JF. RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria. The Isme Journal. PMID 27137126 DOI: 10.1038/ismej.2016.53  1
2016 Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield JF. Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations. Environmental Microbiology. PMID 27112493 DOI: 10.1111/1462-2920.13362  0.32
2016 Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, ... Banfield JF, et al. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology. 7: 238. PMID 26973616 DOI: 10.3389/fmicb.2016.00238  1
2016 Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Williams KH, Banfield JF. Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum. Peerj. 4: e1607. PMID 26844018 DOI: 10.7717/peerj.1607  1
2016 Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield JF. Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems. Nature Communications. 7: 10613. PMID 26837824 DOI: 10.1038/ncomms10613  1
2016 Hu P, Tom L, Singh A, Thomas BC, Baker BJ, Piceno YM, Andersen GL, Banfield JF. Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs. Mbio. 7. PMID 26787827 DOI: 10.1128/mBio.01669-15  1
2016 Legg BA, Zhu M, Zhang H, Waychunas G, Gilbert B, Banfield JF. A Model for Nucleation When Nuclei Are Nonstoichiometric: Understanding the Precipitation of Iron Oxyhydroxide Nanoparticles Crystal Growth and Design. 16: 5726-5737. DOI: 10.1021/acs.cgd.6b00809  0.32
2016 Zhu M, Frandsen C, Wallace AF, Legg B, Khalid S, Zhang H, Mørup S, Banfield JF, Waychunas GA. Precipitation pathways for ferrihydrite formation in acidic solutions Geochimica Et Cosmochimica Acta. 172: 247-264. DOI: 10.1016/j.gca.2015.09.015  1
2016 Bhangar S, Brooks B, Firek B, Licina D, Tang X, Morowitz MJ, Banfield JF, Nazaroff WW. Pilot study of sources and concentrations of size-resolved airborne particles in a neonatal intensive care unit Building and Environment. 106: 10-19. DOI: 10.1016/j.buildenv.2016.06.020  1
2015 Varaljay VA, Satagopan S, North JA, Witte B, Dourado MN, Anantharaman K, Arbing MA, Hoeft McCann S, Oremland RS, Banfield JF, Wrighton KC, Tabita FR. Functional metagenomic selection of RubisCO from uncultivated bacteria. Environmental Microbiology. PMID 26617072 DOI: 10.1111/1462-2920.13138  0.32
2015 Sun CL, Thomas BC, Barrangou R, Banfield JF. Metagenomic reconstructions of bacterial CRISPR loci constrain population histories. The Isme Journal. PMID 26394009 DOI: 10.1038/ismej.2015.162  1
2015 Fakra SC, Luef B, Castelle CJ, Mullin SW, Williams KH, Marcus MA, Schichnes D, Banfield JF. Correlative cryogenic spectro-microscopy to investigate Selenium bioreduction products. Environmental Science & Technology. PMID 26371540 DOI: 10.1021/acs.est.5b01409  0.32
2015 De Yoreo JJ, Gilbert PU, Sommerdijk NA, Penn RL, Whitelam S, Joester D, Zhang H, Rimer JD, Navrotsky A, Banfield JF, Wallace AF, Michel FM, Meldrum FC, Cölfen H, Dove PM. CRYSTAL GROWTH. Crystallization by particle attachment in synthetic, biogenic, and geologic environments. Science (New York, N.Y.). 349: aaa6760. PMID 26228157 DOI: 10.1126/science.aaa6760  1
2015 Zhang H, Waychunas GA, Banfield JF. Molecular Dynamics Simulation Study of the Early Stages of Nucleation of Iron Oxyhydroxide Nanoparticles in Aqueous Solutions. The Journal of Physical Chemistry. B. 119: 10630-42. PMID 26222332 DOI: 10.1021/acs.jpcb.5b03801  1
2015 Brooks B, Mueller RS, Young JC, Morowitz MJ, Hettich RL, Banfield JF. Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant. Frontiers in Microbiology. 6: 654. PMID 26191049 DOI: 10.3389/fmicb.2015.00654  1
2015 Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, Wilkins MJ, Wrighton KC, Williams KH, Banfield JF. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature. 523: 208-11. PMID 26083755 DOI: 10.1038/nature14486  1
2015 Young JC, Pan C, Adams RM, Brooks B, Banfield JF, Morowitz MJ, Hettich RL. Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case. Proteomics. PMID 26077811 DOI: 10.1002/pmic.201400563  1
2015 Hug LA, Thomas BC, Sharon I, Brown CT, Sharma R, Hettich RL, Wilkins MJ, Williams KH, Singh A, Banfield JF. Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages. Environmental Microbiology. PMID 26033198 DOI: 10.1111/1462-2920.12930  1
2015 Kantor RS, van Zyl AW, van Hille RP, Thomas BC, Harrison ST, Banfield JF. Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unraveled with genome-resolved metagenomics. Environmental Microbiology. PMID 26031303 DOI: 10.1111/1462-2920.12936  1
2015 Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. The Isme Journal. PMID 25918833 DOI: 10.1038/ismej.2015.66  1
2015 Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield JF. Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development. Elife. 4. PMID 25735037 DOI: 10.7554/eLife.05477  1
2015 Emerson JB, Thomas BC, Alvarez W, Banfield JF. Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla. Environmental Microbiology. PMID 25727367 DOI: 10.1111/1462-2920.12817  1
2015 Luef B, Frischkorn KR, Wrighton KC, Holman HY, Birarda G, Thomas BC, Singh A, Williams KH, Siegerist CE, Tringe SG, Downing KH, Comolli LR, Banfield JF. Diverse uncultivated ultra-small bacterial cells in groundwater. Nature Communications. 6: 6372. PMID 25721682 DOI: 10.1038/ncomms7372  1
2015 Tully BJ, Emerson JB, Andrade K, Brocks JJ, Allen EE, Banfield JF, Heidelberg KB. De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. Archaea (Vancouver, B.C.). 2015: 875784. PMID 25709557 DOI: 10.1155/2015/875784  1
2015 Castelle CJ, Wrighton KC, Thomas BC, Hug LA, Brown CT, Wilkins MJ, Frischkorn KR, Tringe SG, Singh A, Markillie LM, Taylor RC, Williams KH, Banfield JF. Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Current Biology : Cb. 25: 690-701. PMID 25702576 DOI: 10.1016/j.cub.2015.01.014  1
2015 Sharon I, Kertesz M, Hug LA, Pushkarev D, Blauwkamp TA, Castelle CJ, Amirebrahimi M, Thomas BC, Burstein D, Tringe SG, Williams KH, Banfield JF. Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. Genome Research. 25: 534-43. PMID 25665577 DOI: 10.1101/gr.183012.114  1
2015 Hug LA, Thomas BC, Brown CT, Frischkorn KR, Williams KH, Tringe SG, Banfield JF. Aquifer environment selects for microbial species cohorts in sediment and groundwater. The Isme Journal. 9: 1846-56. PMID 25647349 DOI: 10.1038/ismej.2015.2  1
2015 Aliaga Goltsman DS, Comolli LR, Thomas BC, Banfield JF. Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities. The Isme Journal. 9: 1014-23. PMID 25361394 DOI: 10.1038/ismej.2014.200  1
2015 Xiong W, Giannone RJ, Morowitz MJ, Banfield JF, Hettich RL. Development of an enhanced metaproteomic approach for deepening the microbiome characterization of the human infant gut. Journal of Proteome Research. 14: 133-41. PMID 25350865 DOI: 10.1021/pr500936p  1
2015 Mosier AC, Li Z, Thomas BC, Hettich RL, Pan C, Banfield JF. Elevated temperature alters proteomic responses of individual organisms within a biofilm community. The Isme Journal. 9: 180-94. PMID 25050524 DOI: 10.1038/ismej.2014.113  1
2015 Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environmental Microbiology. 17: 622-36. PMID 24674078 DOI: 10.1111/1462-2920.12467  1
2015 Hendricks U, Pascual MR, Banfield JF, Lewis AE. Measuring precipitation kinetics of sparingly soluble salts using Shock-Freeze Cryo-TEM Journal of Crystal Growth. 432: 108-115. DOI: 10.1016/j.jcrysgro.2015.09.017  1
2015 Dideriksen K, Frandsen C, Bovet N, Wallace AF, Sel O, Arbour T, Navrotsky A, De Yoreo JJ, Banfield JF. Formation and transformation of a short range ordered iron carbonate precursor Geochimica Et Cosmochimica Acta. 164: 53-70. DOI: 10.1016/j.gca.2015.05.005  1
2015 Long PE, Williams KH, Davis JA, Fox PM, Wilkins MJ, Yabusaki SB, Fang Y, Waichler SR, Berman ESF, Gupta M, Chandler DP, Murray C, Peacock AD, Giloteaux L, Handley KM, ... ... Banfield JF, et al. Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer Geochimica Et Cosmochimica Acta. 150: 106-124. DOI: 10.1016/j.gca.2014.11.013  1
2014 Justice NB, Norman A, Brown CT, Singh A, Thomas BC, Banfield JF. Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms. Bmc Genomics. 15: 1107. PMID 25511286 DOI: 10.1186/1471-2164-15-1107  1
2014 Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, ... ... Banfield JF, et al. Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface. Nature Communications. 5: 5497. PMID 25425419 DOI: 10.1038/ncomms6497  1
2014 Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield JF. Impacts of ionic strength on three-dimensional nanoparticle aggregate structure and consequences for environmental transport and deposition. Environmental Science & Technology. 48: 13703-10. PMID 25380400 DOI: 10.1021/es502654q  1
2014 Comolli LR, Banfield JF. Inter-species interconnections in acid mine drainage microbial communities. Frontiers in Microbiology. 5: 367. PMID 25120533 DOI: 10.3389/fmicb.2014.00367  1
2014 Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield JF. Determination of the three-dimensional structure of ferrihydrite nanoparticle aggregates. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 9931-40. PMID 25079430 DOI: 10.1021/la502128d  1
2014 Li Z, Wang Y, Yao Q, Justice NB, Ahn TH, Xu D, Hettich RL, Banfield JF, Pan C. Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. Nature Communications. 5: 4405. PMID 25059763 DOI: 10.1038/ncomms5405  1
2014 Zhang H, Banfield JF. Structural characteristics and mechanical and thermodynamic properties of nanocrystalline TiO2. Chemical Reviews. 114: 9613-44. PMID 25026219 DOI: 10.1021/cr500072j  1
2014 Zhang H, De Yoreo JJ, Banfield JF. A unified description of attachment-based crystal growth. Acs Nano. 8: 6526-30. PMID 25000275 DOI: 10.1021/nn503145w  1
2014 Hanke A, Hamann E, Sharma R, Geelhoed JS, Hargesheimer T, Kraft B, Meyer V, Lenk S, Osmers H, Wu R, Makinwa K, Hettich RL, Banfield JF, Tegetmeyer HE, Strous M. Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat. Frontiers in Microbiology. 5: 231. PMID 24904545 DOI: 10.3389/fmicb.2014.00231  1
2014 Justice NB, Li Z, Wang Y, Spaudling SE, Mosier AC, Hettich RL, Pan C, Banfield JF. (15)N- and (2)H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity. Environmental Microbiology. 16: 3224-37. PMID 24750948 DOI: 10.1111/1462-2920.12488  1
2014 Nielsen MH, Li D, Zhang H, Aloni S, Han TY, Frandsen C, Seto J, Banfield JF, Cölfen H, De Yoreo JJ. Investigating processes of nanocrystal formation and transformation via liquid cell TEM. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 20: 425-36. PMID 24625923 DOI: 10.1017/S1431927614000294  1
2014 Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield JF. Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. The Isme Journal. 8: 1452-63. PMID 24621521 DOI: 10.1038/ismej.2013.249  1
2014 Pan C, Banfield JF. Quantitative metaproteomics: functional insights into microbial communities. Methods in Molecular Biology (Clifton, N.J.). 1096: 231-40. PMID 24515373 DOI: 10.1007/978-1-62703-712-9_18  1
2014 Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome. 2: 1. PMID 24468033 DOI: 10.1186/2049-2618-2-1  1
2014 Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE. Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. The Isme Journal. 8: 979-90. PMID 24335829 DOI: 10.1038/ismej.2013.221  1
2014 Zhang H, Banfield JF. Interatomic Coulombic interactions as the driving force for oriented attachment Crystengcomm. 16: 1568-1578. DOI: 10.1039/c3ce41929k  1
2014 Vu TA, Reagan MM, Li D, Legg B, De Yoreo JJ, Banfield JF, Zhang H. Kinetics of crystal growth of nanogoethite in aqueous solutions containing nitrate and sulfate anions Crystengcomm. 16: 1466-1471. DOI: 10.1039/c3ce41685b  1
2014 Frandsen C, Legg BA, Comolli LR, Zhang H, Gilbert B, Johnson E, Banfield JF. Aggregation-induced growth and transformation of β-FeOOH nanorods to micron-sized α-Fe2O3 spindles Crystengcomm. 16: 1451-1458. DOI: 10.1039/c3ce40983j  1
2013 Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, et al. Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013. Standards in Genomic Sciences. 8: 561-70. PMID 24501639 DOI: 10.4056/sigs.4638348  1
2013 Brown CT, Sharon I, Thomas BC, Castelle CJ, Morowitz MJ, Banfield JF. Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life. Microbiome. 1: 30. PMID 24451181 DOI: 10.1186/2049-2618-1-30  0.32
2013 Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield JF. Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome. 1: 22. PMID 24450983 DOI: 10.1186/2049-2618-1-22  1
2013 Sharon I, Banfield JF. Microbiology. Genomes from metagenomics. Science (New York, N.Y.). 342: 1057-8. PMID 24288324 DOI: 10.1126/science.1247023  1
2013 Acuña LG, Cárdenas JP, Covarrubias PC, Haristoy JJ, Flores R, Nuñez H, Riadi G, Shmaryahu A, Valdés J, Dopson M, Rawlings DE, Banfield JF, Holmes DS, Quatrini R. Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. Plos One. 8: e78237. PMID 24250794 DOI: 10.1371/journal.pone.0078237  1
2013 Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield JF. Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. Mbio. 4: e00708-13. PMID 24149512 DOI: 10.1128/mBio.00708-13  1
2013 Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife. 2: e01102. PMID 24137540 DOI: 10.7554/eLife.01102  1
2013 Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield JF. New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake. Applied and Environmental Microbiology. 79: 6755-64. PMID 23995931 DOI: 10.1128/AEM.01946-13  1
2013 Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Communications. 4: 2120. PMID 23979677 DOI: 10.1038/ncomms3120  1
2013 Wallace AF, Hedges LO, Fernandez-Martinez A, Raiteri P, Gale JD, Waychunas GA, Whitelam S, Banfield JF, De Yoreo JJ. Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions. Science (New York, N.Y.). 341: 885-9. PMID 23970697 DOI: 10.1126/science.1230915  1
2013 Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC, Banfield JF. Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea. Bmc Genomics. 14: 485. PMID 23865623 DOI: 10.1186/1471-2164-14-485  1
2013 Emerson JB, Andrade K, Thomas BC, Norman A, Allen EE, Heidelberg KB, Banfield JF. Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia. Archaea (Vancouver, B.C.). 2013: 370871. PMID 23853523 DOI: 10.1155/2013/370871  1
2013 Zhang H, Finnegan MP, Banfield JF. Titania nanorods curve to lower their energy. Nanoscale. 5: 6742-6. PMID 23794056 DOI: 10.1039/c3nr02616g  0.56
2013 Fischer CR, Bowen BP, Pan C, Northen TR, Banfield JF. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. Acs Chemical Biology. 8: 1755-63. PMID 23713674 DOI: 10.1021/cb400210q  1
2013 Yelton AP, Williams KH, Fournelle J, Wrighton KC, Handley KM, Banfield JF. Vanadate and acetate biostimulation of contaminated sediments decreases diversity, selects for specific taxa, and decreases aqueous V5+ concentration. Environmental Science & Technology. 47: 6500-9. PMID 23713472 DOI: 10.1021/es4006674  1
2013 Goltsman DS, Dasari M, Thomas BC, Shah MB, VerBerkmoes NC, Hettich RL, Banfield JF. New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species "Leptospirillum group IV UBA BS". Applied and Environmental Microbiology. 79: 5384-93. PMID 23645189 DOI: 10.1128/AEM.00202-13  1
2013 Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. Assembly-driven community genomics of a hypersaline microbial ecosystem. Plos One. 8: e61692. PMID 23637883 DOI: 10.1371/journal.pone.0061692  1
2013 Moreau JW, Fournelle JH, Banfield JF. Quantifying heavy metals sequestration by sulfate-reducing bacteria in an Acid mine drainage-contaminated natural wetland. Frontiers in Microbiology. 4: 43. PMID 23487496 DOI: 10.3389/fmicb.2013.00043  1
2013 Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. Mbio. 4: e00484-12. PMID 23481603 DOI: 10.1128/mBio.00484-12  1
2013 Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface. Plos One. 8: e57819. PMID 23472107 DOI: 10.1371/journal.pone.0057819  1
2013 Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science (New York, N.Y.). 339: 1207-10. PMID 23471408 DOI: 10.1126/science.1231707  1
2013 Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF. Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. Plos One. 8: e56018. PMID 23405248 DOI: 10.1371/journal.pone.0056018  1
2013 Paez-Espino D, Morovic W, Sun CL, Thomas BC, Ueda K, Stahl B, Barrangou R, Banfield JF. Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nature Communications. 4: 1430. PMID 23385575 DOI: 10.1038/ncomms2440  1
2013 Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. The Isme Journal. 7: 800-16. PMID 23190730 DOI: 10.1038/ismej.2012.148  1
2013 Sun CL, Barrangou R, Thomas BC, Horvath P, Fremaux C, Banfield JF. Phage mutations in response to CRISPR diversification in a bacterial population. Environmental Microbiology. 15: 463-70. PMID 23057534 DOI: 10.1111/j.1462-2920.2012.02879.x  1
2013 Luef B, Fakra SC, Csencsits R, Wrighton KC, Williams KH, Wilkins MJ, Downing KH, Long PE, Comolli LR, Banfield JF. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth. The Isme Journal. 7: 338-50. PMID 23038172 DOI: 10.1038/ismej.2012.103  1
2013 Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Research. 23: 111-20. PMID 22936250 DOI: 10.1101/gr.142315.112  1
2013 Welch SA, Banfield JF. Microbial controls on the mineralogy of the environment European Mineralogical Union Notes in Mineralogy. 13: 177-212. DOI: 10.1180/EMU-notes.13.5  1
2012 Knierim B, Luef B, Wilmes P, Webb RI, Auer M, Comolli LR, Banfield JF. Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities. Environmental Microbiology Reports. 4: 36-41. PMID 23757227 DOI: 10.1111/j.1758-2229.2011.00275.x  1
2012 Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science (New York, N.Y.). 337: 1661-5. PMID 23019650 DOI: 10.1126/science.1224041  1
2012 Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF. Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities. Applied and Environmental Microbiology. 78: 8321-30. PMID 23001646 DOI: 10.1128/AEM.01938-12  1
2012 Hirata A, Fujishima K, Yamagami R, Kawamura T, Banfield JF, Kanai A, Hori H. X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity. Nucleic Acids Research. 40: 10554-66. PMID 22941657 DOI: 10.1093/nar/gks826  1
2012 Cruz-Martínez K, Rosling A, Zhang Y, Song M, Andersen GL, Banfield JF. Effect of rainfall-induced soil geochemistry dynamics on grassland soil microbial communities. Applied and Environmental Microbiology. 78: 7587-95. PMID 22904056 DOI: 10.1128/AEM.00203-12  1
2012 Zhu M, Legg B, Zhang H, Gilbert B, Ren Y, Banfield JF, Waychunas GA. Early stage formation of iron oxyhydroxides during neutralization of simulated acid mine drainage solutions. Environmental Science & Technology. 46: 8140-7. PMID 22765054 DOI: 10.1021/es301268g  1
2012 Young JC, Dill BD, Pan C, Hettich RL, Banfield JF, Shah M, Fremaux C, Horvath P, Barrangou R, Verberkmoes NC. Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus. Plos One. 7: e38077. PMID 22666452 DOI: 10.1371/journal.pone.0038077  1
2012 Li D, Nielsen MH, Lee JR, Frandsen C, Banfield JF, De Yoreo JJ. Direction-specific interactions control crystal growth by oriented attachment. Science (New York, N.Y.). 336: 1014-8. PMID 22628650 DOI: 10.1126/science.1219643  1
2012 Schmidt MC, Rocha AM, Padmanabhan K, Shpanskaya Y, Banfield J, Scott K, Mihelcic JR, Samatova NF. NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems. Plos Computational Biology. 8: e1002490. PMID 22589706 DOI: 10.1371/journal.pcbi.1002490  1
2012 Denef VJ, Banfield JF. In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids. Science (New York, N.Y.). 336: 462-6. PMID 22539719 DOI: 10.1126/science.1218389  1
2012 Weinberger AD, Sun CL, PluciÅ„ski MM, Denef VJ, Thomas BC, Horvath P, Barrangou R, Gilmore MS, Getz WM, Banfield JF. Persisting viral sequences shape microbial CRISPR-based immunity. Plos Computational Biology. 8: e1002475. PMID 22532794 DOI: 10.1371/journal.pcbi.1002475  1
2012 Handley KM, Wrighton KC, Piceno YM, Andersen GL, DeSantis TZ, Williams KH, Wilkins MJ, N'Guessan AL, Peacock A, Bargar J, Long PE, Banfield JF. High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment. Fems Microbiology Ecology. 81: 188-204. PMID 22432531 DOI: 10.1111/j.1574-6941.2012.01363.x  1
2012 Singer DM, Chatman SM, Ilton ES, Rosso KM, Banfield JF, Waychunas GA. U(VI) sorption and reduction kinetics on the magnetite (111) surface. Environmental Science & Technology. 46: 3821-30. PMID 22394451 DOI: 10.1021/es203878c  1
2012 Singer DM, Chatman SM, Ilton ES, Rosso KM, Banfield JF, Waychunas GA. Identification of simultaneous U(VI) sorption complexes and U(IV) nanoprecipitates on the magnetite (111) surface. Environmental Science & Technology. 46: 3811-20. PMID 22364181 DOI: 10.1021/es203877x  1
2012 Comolli LR, Duarte R, Baum D, Luef B, Downing KH, Larson DM, Csencsits R, Banfield JF. A portable cryo-plunger for on-site intact cryogenic microscopy sample preparation in natural environments. Microscopy Research and Technique. 75: 829-36. PMID 22213355 DOI: 10.1002/jemt.22001  1
2012 Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. The Isme Journal. 6: 81-93. PMID 21716304 DOI: 10.1038/ismej.2011.78  1
2012 Fernando S, Baynes M, Chen B, Banfield JF, Zhang H. Compressibility and structural stability of nanoparticulate goethite Rsc Advances. 2: 6768-6772. DOI: 10.1039/c2ra20217d  1
2012 Zhang H, Banfield JF. Energy calculations predict nanoparticle attachment orientations and asymmetric crystal formation Journal of Physical Chemistry Letters. 3: 2882-2886. DOI: 10.1021/jz301161j  1
2012 Cervini-Silva J, Kearns J, Banfield J. Steady-state dissolution kinetics of mineral ferric phosphate in the presence of desferrioxamine-B and oxalate ligands at pH=4-6 and T=24±0.6°C Chemical Geology. 320: 1-8. DOI: 10.1016/j.chemgeo.2012.05.022  1
2012 Fischer CR, Wilmes P, Bowen BP, Northen TR, Banfield JF. Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities Metabolomics. 8: 566-578. DOI: 10.1007/s11306-011-0344-x  1
2012 Berhe AA, Suttle KB, Burton SD, Banfield JF. Contingency in the direction and mechanics of soil organic matter responses to increased rainfall Plant and Soil. 358: 371-383. DOI: 10.1007/s11104-012-1156-0  1
2011 Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, Justice N, Banfield JF. A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. Plos Computational Biology. 7: e1002230. PMID 22028637 DOI: 10.1371/journal.pcbi.1002230  1
2011 Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Research. 39: 9695-704. PMID 21880595 DOI: 10.1093/nar/gkr692  1
2011 Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Improved genome annotation through untargeted detection of pathway-specific metabolites. Bmc Genomics. 12: S6. PMID 21810208 DOI: 10.1186/1471-2164-12-S1-S6  1
2011 Jiao Y, D'haeseleer P, Dill BD, Shah M, Verberkmoes NC, Hettich RL, Banfield JF, Thelen MP. Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community. Applied and Environmental Microbiology. 77: 5230-7. PMID 21685158 DOI: 10.1128/AEM.03005-10  1
2011 Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biology. 12: R44. PMID 21595876 DOI: 10.1186/gb-2011-12-5-r44  1
2011 Mueller RS, Dill BD, Pan C, Belnap CP, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community. Environmental Microbiology. 13: 2279-92. PMID 21518216 DOI: 10.1111/j.1462-2920.2011.02486.x  1
2011 Pan C, Fischer CR, Hyatt D, Bowen BP, Hettich RL, Banfield JF. Quantitative tracking of isotope flows in proteomes of microbial communities. Molecular & Cellular Proteomics : McP. 10: M110.006049. PMID 21285414 DOI: 10.1074/mcp.M110.006049  1
2011 Belnap CP, Pan C, Denef VJ, Samatova NF, Hettich RL, Banfield JF. Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions. The Isme Journal. 5: 1152-61. PMID 21228889 DOI: 10.1038/ismej.2010.200  1
2011 Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proceedings of the National Academy of Sciences of the United States of America. 108: 1128-33. PMID 21191099 DOI: 10.1073/pnas.1010992108  1
2011 Pride DT, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Research. 21: 126-36. PMID 21149389 DOI: 10.1101/gr.111732.110  1
2011 Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant (Proceedings of the National Academy of Sciences of the United States of America (2011) 108, 3 (1128-1133) DOI: 10.1073/pnas.1010992108) Proceedings of the National Academy of Sciences of the United States of America. 108: 4512. DOI: 10.1073/pnas.1102689108  1
2011 Zhang H, Bayne M, Fernando S, Legg B, Zhu M, Penn RL, Banfield JF. Size-dependent bandgap of nanogoethite Journal of Physical Chemistry C. 115: 17704-17710. DOI: 10.1021/jp205192a  1
2011 Ma S, Banfield JF. Micron-scale Fe 2+/Fe 3+, intermediate sulfur species and O 2 gradients across the biofilm-solution-sediment interface control biofilm organization Geochimica Et Cosmochimica Acta. 75: 3568-3580. DOI: 10.1016/j.gca.2011.03.035  1
2010 Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H, Smith RD, Lovley DR, Lipton MS, Long PE. Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles. Environmental Science & Technology. 44: 8897-903. PMID 21058662 DOI: 10.1021/es101029f  1
2010 Mueller RS, Denef VJ, Kalnejais LH, Suttle KB, Thomas BC, Wilmes P, Smith RL, Nordstrom DK, McCleskey RB, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF. Ecological distribution and population physiology defined by proteomics in a natural microbial community. Molecular Systems Biology. 6: 374. PMID 20531404 DOI: 10.1038/msb.2010.30  1
2010 Singer SW, Erickson BK, VerBerkmoes NC, Hwang M, Shah MB, Hettich RL, Banfield JF, Thelen MP. Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities. The Isme Journal. 4: 1398-409. PMID 20485387 DOI: 10.1038/ismej.2010.64  1
2010 Moreau JW, Zierenberg RA, Banfield JF. Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage. Applied and Environmental Microbiology. 76: 4819-28. PMID 20472728 DOI: 10.1128/AEM.03006-09  1
2010 Baker BJ, Comolli LR, Dick GJ, Hauser LJ, Hyatt D, Dill BD, Land ML, Verberkmoes NC, Hettich RL, Banfield JF. Enigmatic, ultrasmall, uncultivated Archaea. Proceedings of the National Academy of Sciences of the United States of America. 107: 8806-11. PMID 20421484 DOI: 10.1073/pnas.0914470107  1
2010 Jiao Y, Cody GD, Harding AK, Wilmes P, Schrenk M, Wheeler KE, Banfield JF, Thelen MP. Characterization of extracellular polymeric substances from acidophilic microbial biofilms. Applied and Environmental Microbiology. 76: 2916-22. PMID 20228116 DOI: 10.1128/AEM.02289-09  1
2010 Erickson BK, Mueller RS, VerBerkmoes NC, Shah M, Singer SW, Thelen MP, Banfield JF, Hettich RL. Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community. Journal of Proteome Research. 9: 2148-59. PMID 20218729 DOI: 10.1021/pr900877a  1
2010 Pan C, Park BH, McDonald WH, Carey PA, Banfield JF, VerBerkmoes NC, Hettich RL, Samatova NF. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. Bmc Bioinformatics. 11: 118. PMID 20205730 DOI: 10.1186/1471-2105-11-118  1
2010 Denef VJ, Mueller RS, Banfield JF. AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. The Isme Journal. 4: 599-610. PMID 20164865 DOI: 10.1038/ismej.2009.158  1
2010 Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 107: 2383-90. PMID 20133593 DOI: 10.1073/pnas.0907041107  1
2010 Belnap CP, Pan C, VerBerkmoes NC, Power ME, Samatova NF, Carver RL, Hettich RL, Banfield JF. Cultivation and quantitative proteomic analyses of acidophilic microbial communities. The Isme Journal. 4: 520-30. PMID 20033068 DOI: 10.1038/ismej.2009.139  1
2010 Wheeler KE, Zemla A, Jiao Y, Goltsman DSA, Singer SW, Banfield JF, Thelen MP. Functional insights from computational modeling of orphan proteins expressed in a microbial community Journal of Proteomics and Bioinformatics. 3: 266-274. DOI: 10.4172/jpb.1000150  1
2010 Zhang H, Chen B, Ren Y, Waychunas GA, Banfield JF. Response of nanoparticle structure to different types of surface environments: Wide-angle x-ray scattering and molecular dynamics simulations Physical Review B - Condensed Matter and Materials Physics. 81. DOI: 10.1103/PhysRevB.81.125444  1
2010 Zhang H, Chen B, Banfield JF. Particle size and pH effects on nanoparticle dissolution Journal of Physical Chemistry C. 114: 14876-14884. DOI: 10.1021/jp1060842  1
2009 Williams KH, Kemna A, Wilkins MJ, Druhan J, Arntzen E, N'Guessan AL, Long PE, Hubbard SS, Banfield JF. Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation. Environmental Science & Technology. 43: 6717-23. PMID 19764240 DOI: 10.1021/es900855j  1
2009 Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, ... Banfield JF, et al. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Applied and Environmental Microbiology. 75: 6591-9. PMID 19717633 DOI: 10.1128/AEM.01064-09  1
2009 Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Community-wide analysis of microbial genome sequence signatures. Genome Biology. 10: R85. PMID 19698104 DOI: 10.1186/gb-2009-10-8-r85  1
2009 Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, ... ... Banfield JF, et al. Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms. Applied and Environmental Microbiology. 75: 4599-615. PMID 19429552 DOI: 10.1128/AEM.02943-08  1
2009 Zhang H, Chen B, Banfield JF. The size dependence of the surface free energy of titania nanocrystals. Physical Chemistry Chemical Physics : Pccp. 11: 2553-8. PMID 19325990 DOI: 10.1039/b819623k  1
2009 Cruz-Martínez K, Suttle KB, Brodie EL, Power ME, Andersen GL, Banfield JF. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. The Isme Journal. 3: 738-44. PMID 19279669 DOI: 10.1038/ismej.2009.16  1
2009 VerBerkmoes NC, Denef VJ, Hettich RL, Banfield JF. Systems biology: Functional analysis of natural microbial consortia using community proteomics. Nature Reviews. Microbiology. 7: 196-205. PMID 19219053 DOI: 10.1038/nrmicro2080  1
2009 Baker BJ, Tyson GW, Goosherst L, Banfield JF. Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Applied and Environmental Microbiology. 75: 2192-9. PMID 19201960 DOI: 10.1128/AEM.02500-08  1
2009 Wilmes P, Simmons SL, Denef VJ, Banfield JF. The dynamic genetic repertoire of microbial communities. Fems Microbiology Reviews. 33: 109-32. PMID 19054116 DOI: 10.1111/j.1574-6976.2008.00144.x  1
2009 Comolli LR, Baker BJ, Downing KH, Siegerist CE, Banfield JF. Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. The Isme Journal. 3: 159-67. PMID 18946497 DOI: 10.1038/ismej.2008.99  1
2009 Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF. Natural acidophilic biofilm communities reflect distinct organismal and functional organization. The Isme Journal. 3: 266-70. PMID 18843299 DOI: 10.1038/ismej.2008.90  1
2009 Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF. Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environmental Microbiology. 11: 313-25. PMID 18826438 DOI: 10.1111/j.1462-2920.2008.01769.x  1
2009 Chen B, Zhang H, Dunphy-Guzman KA, Spagnoli D, Kruger MB, Muthu DVS, Kunz M, Fakra S, Hu JZ, Guo QZ, Banfield JF. Size-dependent elasticity of nanocrystalline titania Physical Review B - Condensed Matter and Materials Physics. 79. DOI: 10.1103/PhysRevB.79.125406  1
2009 Zhang H, Banfield JF. Identification and growth mechanism of ZnS nanoparticles with mixed cubic and hexagonal stacking Journal of Physical Chemistry C. 113: 9681-9687. DOI: 10.1021/jp902499a  1
2009 Spagnoli D, Gilbert B, Waychunas GA, Banfield JF. Prediction of the effects of size and morphology on the structure of water around hematite nanoparticles Geochimica Et Cosmochimica Acta. 73: 4023-4033. DOI: 10.1016/j.gca.2009.04.005  1
2009 Chan CS, Fakra SC, Edwards DC, Emerson D, Banfield JF. Iron oxyhydroxide mineralization on microbial extracellular polysaccharides Geochimica Et Cosmochimica Acta. 73: 3807-3818. DOI: 10.1016/j.gca.2009.02.036  1
2008 Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF. Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. Plos Biology. 6: e177. PMID 18651792 DOI: 10.1371/journal.pbio.0060177  1
2008 Andersson AF, Banfield JF. Virus population dynamics and acquired virus resistance in natural microbial communities. Science (New York, N.Y.). 320: 1047-50. PMID 18497291 DOI: 10.1126/science.1157358  1
2008 Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP. Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Applied and Environmental Microbiology. 74: 4454-62. PMID 18469132 DOI: 10.1128/AEM.02799-07  1
2008 Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP. Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. The Isme Journal. 2: 542-50. PMID 18463612 DOI: 10.1038/ismej.2008.17  1
2008 Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL, VerBerkmoes NC, Banfield JF. Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal. The Isme Journal. 2: 853-64. PMID 18449217 DOI: 10.1038/ismej.2008.38  1
2008 Tyson GW, Banfield JF. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environmental Microbiology. 10: 200-7. PMID 17894817 DOI: 10.1111/j.1462-2920.2007.01444.x  1
2008 Zhang H, Chen B, Banfield JF, Waychunas GA. Atomic structure of nanometer-sized amorphous TiO2 Physical Review B - Condensed Matter and Materials Physics. 78. DOI: 10.1103/PhysRevB.78.214106  1
2008 Spagnoli D, Banfield JF, Parker SC. Free energy change of aggregation of nanoparticles Journal of Physical Chemistry C. 112: 14731-14736. DOI: 10.1021/jp804966c  1
2008 Goodell CM, Gilbert B, Weigand SJ, Banfield JF. Kinetics of water adsorption-driven structural transformation of ZnS nanoparticles Journal of Physical Chemistry C. 112: 4791-4796. DOI: 10.1021/jp077189m  1
2008 Finnegan MP, Zhang H, Banfield JF. Anatase coarsening kinetics under hydrothermal conditions as a function of Ph and temperature Chemistry of Materials. 20: 3443-3449. DOI: 10.1021/cm071057o  1
2007 Eppley JM, Tyson GW, Getz WM, Banfield JF. Strainer: software for analysis of population variation in community genomic datasets. Bmc Bioinformatics. 8: 398. PMID 17941997 DOI: 10.1186/1471-2105-8-398  1
2007 Eppley JM, Tyson GW, Getz WM, Banfield JF. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 177: 407-16. PMID 17603112 DOI: 10.1534/genetics.107.072892  1
2007 Denef VJ, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF. Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis. Journal of Proteome Research. 6: 3152-61. PMID 17602579 DOI: 10.1021/pr0701005  1
2007 Moreau JW, Weber PK, Martin MC, Gilbert B, Hutcheon ID, Banfield JF. Extracellular proteins limit the dispersal of biogenic nanoparticles. Science (New York, N.Y.). 316: 1600-3. PMID 17569859 DOI: 10.1126/science.1141064  1
2007 Zhang H, Rustad JR, Banfield JF. Interaction between water molecules and zinc sulfide nanoparticles studied by temperature-programmed desorption and molecular dynamics simulations. The Journal of Physical Chemistry. A. 111: 5008-14. PMID 17518448 DOI: 10.1021/jp0688916  1
2007 Chen B, Zhang H, Gilbert B, Banfield JF. Mechanism of inhibition of nanoparticle growth and phase transformation by surface impurities. Physical Review Letters. 98: 106103. PMID 17358550 DOI: 10.1103/PhysRevLett.98.106103  1
2007 Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature. 446: 537-41. PMID 17344860 DOI: 10.1038/nature05624  0.96
2007 Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. Genome dynamics in a natural archaeal population. Proceedings of the National Academy of Sciences of the United States of America. 104: 1883-8. PMID 17267615 DOI: 10.1073/pnas.0604851104  1
2007 Rosling A, Suttle KB, Johansson E, Van Hees PAW, Banfield JF. Phosphorous availability influences the dissolution of apatite by soil fungi Geobiology. 5: 265-280. DOI: 10.1111/j.1472-4669.2007.00107.x  1
2007 Williams KH, Hubbard SS, Banfield JF. Galvanic interpretation of self-potential signals associated with microbial sulfate-reduction Journal of Geophysical Research: Biogeosciences. 112. DOI: 10.1029/2007JG000440  1
2007 Zhang H, Banfield JF. Polymorphic transformations and particle coarsening in nanocrystalline titania ceramic powders and membranes Journal of Physical Chemistry C. 111: 6621-6629. DOI: 10.1021/jp067665t  1
2007 Finnegan MP, Zhang H, Banfield JF. Phase stability and transformation in titania nanoparticles in aqueous solutions dominated by surface energy Journal of Physical Chemistry C. 111: 1962-1968. DOI: 10.1021/jp063822c  1
2006 Guzman KA, Finnegan MP, Banfield JF. Influence of surface potential on aggregation and transport of titania nanoparticles. Environmental Science & Technology. 40: 7688-93. PMID 17256514 DOI: 10.1021/es060847g  1
2006 Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, Banfield JF. Lineages of acidophilic archaea revealed by community genomic analysis. Science (New York, N.Y.). 314: 1933-5. PMID 17185602 DOI: 10.1126/science.1132690  1
2006 Whitaker RJ, Banfield JF. Population genomics in natural microbial communities. Trends in Ecology & Evolution. 21: 508-16. PMID 16859806 DOI: 10.1016/j.tree.2006.07.001  1
2006 Gilbert B, Huang F, Lin Z, Goodell C, Zhang H, Banfield JF. Surface chemistry controls crystallinity of ZnS nanoparticles Nano Letters. 6: 605-610. PMID 16608252 DOI: 10.1021/nl052201c  1
2006 Guzmán KA, Taylor MR, Banfield JF. Environmental risks of nanotechnology: National Nanotechnology Initiative funding, 2000-2004. Environmental Science & Technology. 40: 1401-7. PMID 16568748 DOI: 10.1021/es0515708  1
2006 Gilbert B, Zhang H, Chen B, Kunz M, Huang F, Banfield JF. Compressibility of zinc sulfide nanoparticles Physical Review B - Condensed Matter and Materials Physics. 74. DOI: 10.1103/PhysRevB.74.115405  1
2006 Zhang H, Chen B, Gilbert B, Banfield JF. Kinetically controlled formation of a novel nanoparticulate ZnS with mixed cubic and hexagonal stacking Journal of Materials Chemistry. 16: 249-254. DOI: 10.1039/b512580d  1
2006 Green EG, Dietrich WE, Banfield JF. Quantification of chemical weathering rates across an actively eroding hillslope Earth and Planetary Science Letters. 242: 155-169. DOI: 10.1016/j.epsl.2005.11.039  1
2006 Zhang H, Gilbert B, Chen B, Banfield JF. WAXS and PDF-based analyses of chromium doping in nanocrystalline titania (anatase and brookite) Materials Research Society Symposium Proceedings. 915: 237-242.  1
2005 Naicker PK, Cummings PT, Zhang H, Banfield JF. Characterization of titanium dioxide nanoparticles using molecular dynamics simulations. The Journal of Physical Chemistry. B. 109: 15243-9. PMID 16852930 DOI: 10.1021/jp050963q  1
2005 Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP. Proteogenomic approaches for the molecular characterization of natural microbial communities Omics a Journal of Integrative Biology. 9: 301-333. PMID 16402891 DOI: 10.1089/omi.2005.9.301  1
2005 Williams KH, Ntarlagiannis D, Slater LD, Dohnalkova A, Hubbard SS, Banfield JF. Geophysical imaging of stimulated microbial biomineralization Environmental Science and Technology. 39: 7592-7600. PMID 16245832 DOI: 10.1021/es0504035  1
2005 Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Applied and Environmental Microbiology. 71: 6319-24. PMID 16204553 DOI: 10.1128/AEM.71.10.6319-6324.2005  1
2005 Tyson GW, Banfield JF. Cultivating the uncultivated: a community genomics perspective. Trends in Microbiology. 13: 411-5. PMID 16043355 DOI: 10.1016/j.tim.2005.07.003  1
2005 Allen EE, Banfield JF. Community genomics in microbial ecology and evolution. Nature Reviews. Microbiology. 3: 489-98. PMID 15931167 DOI: 10.1038/nrmicro1157  1
2005 Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, Shah M, Hettich RL, Banfield JF. Community proteomics of a natural microbial biofilm. Science (New York, N.Y.). 308: 1915-20. PMID 15879173 DOI: 10.1126/science. 1109070  1
2005 Baumler DJ, Jeong KC, Fox BG, Banfield JF, Kaspar CW. Sulfate requirement for heterotrophic growth of "Ferroplasma acidarmanus" strain fer1. Research in Microbiology. 156: 492-8. PMID 15862447 DOI: 10.1016/j.resmic.2004.12.007  1
2005 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Direct microbial reduction and subsequent preservation of uranium in natural near-surface sediment. Applied and Environmental Microbiology. 71: 1790-7. PMID 15812002 DOI: 10.1128/AEM.71.4.1790-1797.2005  1
2005 Gilbert B, Banfield JF. Molecular-scale processes involving nanoparticulate minerals in biogeochemical systems Reviews in Mineralogy and Geochemistry. 59: 109-155. DOI: 10.2138/rmg.2005.59.6  1
2005 Whitaker RJ, Banfield JF. Population dynamics through the lens of extreme environments Reviews in Mineralogy and Geochemistry. 59: 259-277. DOI: 10.2138/rmg.2005.59.11  1
2005 Banfield JF, Tyson GW, Allen EE, Whitaker RJ. The search for a molecular-level understanding of the processes that underpin the Earth's biogeochemical cycles Reviews in Mineralogy and Geochemistry. 59: 1-7. DOI: 10.2138/rmg.2005.59.1  1
2005 Banfield JF, Cervini-Silva J, Nealson KH. Preface Reviews in Mineralogy and Geochemistry. 59: i. DOI: 10.2138/rmg.2005.59.0  1
2005 Huang F, Banfield JF. Size-dependent phase transformation kinetics in nanocrystalline ZnS Journal of the American Chemical Society. 127: 4523-4529. DOI: 10.1021/ja048121c  1
2005 Zhang H, Banfield JF. Size dependence of the kinetic rate constant for phase transformation in TiO 2 nanoparticles Chemistry of Materials. 17: 3421-3425. DOI: 10.1021/cm0508423  1
2005 Waychunas GA, Kim CS, Banfield JF. Nanoparticulate iron oxide minerals in soils and sediments: Unique properties and contaminant scavenging mechanisms Journal of Nanoparticle Research. 7: 409-433. DOI: 10.1007/s11051-005-6931-x  1
2004 Baker BJ, Lutz MA, Dawson SC, Bond PL, Banfield JF. Metabolically active eukaryotic communities in extremely acidic mine drainage. Applied and Environmental Microbiology. 70: 6264-71. PMID 15466574 DOI: 10.1128/AEM.70.10.6264-6271.2004  1
2004 Macalady JL, Vestling MM, Baumler D, Boekelheide N, Kaspar CW, Banfield JF. Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles : Life Under Extreme Conditions. 8: 411-9. PMID 15258835 DOI: 10.1007/s00792-004-0404-5  1
2004 Chan CS, De Stasio G, Welch SA, Girasole M, Frazer BH, Nesterova MV, Fakra S, Banfield JF. Microbial polysaccharides template assembly of nanocrystal fibers. Science (New York, N.Y.). 303: 1656-8. PMID 15016997 DOI: 10.1126/science.1092098  1
2004 Labrenz M, Banfield JF. Sulfate-reducing bacteria-dominated biofilms that precipitate ZnS in a subsurface circumneutral-pH mine drainage system Microbial Ecology. 47: 205-217. PMID 14994175  1
2004 Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428: 37-43. PMID 14961025 DOI: 10.1038/nature02340  1
2004 Gilbert B, Huang F, Zhang H, Waychunas GA, Banfield JF. Nanoparticles: Strained and stiff Science. 305: 651-654. DOI: 10.1126/science.1098454  1
2004 Huang F, Gilbert B, Zhang H, Banfield JF. Reversible, surface-controlled structure transformation in nanoparticles induced by an aggregation state Physical Review Letters. 92: 155501-1. DOI: 10.1103/PhysRevLett.92.155501  1
2004 Suzuki Y, Banfield JF. Resistance to, and accumulation of, uranium by bacteria from a uranium-contaminated site Geomicrobiology Journal. 21: 113-121. DOI: 10.1080/01490450490266361  1
2004 Druschel GK, Baker BJ, Gihring TM, Banfield JF. Acid mine drainage biogeochemistry at Iron Mountain, California Geochemical Transactions. 5: 13-32. DOI: 10.1063/1.1769131  1
2004 Gilbert B, Zhang H, Huang F, Banfield JF, Ren Y, Haskel D, Lang JC, Srajer G, Jürgensen A, Waychunas GA. Analysis and simulation of the structure of nanoparticles that undergo a surface-driven structural transformation Journal of Chemical Physics. 120: 11785-11795. DOI: 10.1063/1.1752890  1
2004 Zhang H, Banfield JF. Aggregation, coarsening, and phase transformation in ZnS nanoparticles studied by molecular dynamics simulations Nano Letters. 4: 713-718. DOI: 10.1021/nl035238a  1
2004 Moreau JW, Webb RI, Banfield JF. Ultrastructure, aggregation-state, and crystal growth of biogenic nanocrystalline sphalerite and wurtzite American Mineralogist. 89: 950-960.  1
2003 Baker BJ, Banfield JF. Microbial communities in acid mine drainage. Fems Microbiology Ecology. 44: 139-52. PMID 19719632 DOI: 10.1016/S0168-6496(03)00028-X  1
2003 Baker BJ, Hugenholtz P, Dawson SC, Banfield JF. Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Applied and Environmental Microbiology. 69: 5512-8. PMID 12957940 DOI: 10.1128/AEM.69.9.5512-5518.2003  1
2003 Gihring TM, Bond PL, Peters SC, Banfield JF. Arsenic resistance in the archaeon "Ferroplasma acidarmanus": new insights into the structure and evolution of the ars genes. Extremophiles : Life Under Extreme Conditions. 7: 123-30. PMID 12664264 DOI: 10.1007/s00792-002-0303-6  1
2003 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment. Applied and Environmental Microbiology. 69: 1337-46. PMID 12620814 DOI: 10.1128/AEM.69.3.1337-1346.2003  1
2003 Druschel GK, Hamers RJ, Banfield JF. Kinetics and mechanism of polythionate oxidation to sulfate at low pH by O2 and Fe3+ Geochimica Et Cosmochimica Acta. 67: 4457-4469. DOI: 10.1016/S0016-7037(03)00388-0  1
2002 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Nanometre-size products of uranium bioreduction. Nature. 419: 134. PMID 12226656 DOI: 10.1038/419134a  1
2002 Newman DK, Banfield JF. Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science (New York, N.Y.). 296: 1071-7. PMID 12004119 DOI: 10.1126/science.1010716  1
2002 Ranade MR, Navrotsky A, Zhang HZ, Banfield JF, Elder SH, Zaban A, Borse PH, Kulkarni SK, Doran GS, Whitfield HJ. Energetics of nanocrystalline TiO2. Proceedings of the National Academy of Sciences of the United States of America. 99: 6476-81. PMID 11880610 DOI: 10.1073/pnas.251534898  1
2002 Druschel GK, Labrenz M, Thomsen-Ebert T, Fowle DA, Banfield JF. Geochemical modeling of ZnS in biofilms: An example of ore depositional processes Economic Geology. 97: 1319-1329. DOI: 10.2113/gsecongeo.97.6.1319  1
2002 Welch SA, Taunton AE, Banfield JF. Effect of microorganisms and microbial metabolites on apatite dissolution Geomicrobiology Journal. 19: 343-367. DOI: 10.1080/01490450290098414  1
2001 Banfield JF, Moreau JW, Chan CS, Welch SA, Little B. Mineralogical biosignatures and the search for life on Mars. Astrobiology. 1: 447-65. PMID 12448978 DOI: 10.1089/153110701753593856  1
2001 Gihring TM, Banfield JF. Arsenite oxidation and arsenate respiration by a new Thermus isolate Fems Microbiology Letters. 204: 335-340. PMID 11731145 DOI: 10.1111/j.1574-6968.2001.tb10907.x  1
2001 Gihring TM, Druschel GK, McCleskey RB, Hamers RJ, Banfield JF. Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: field and laboratory investigations. Environmental Science & Technology. 35: 3857-62. PMID 11642444 DOI: 10.1021/es010816f  1
2000 Edwards KJ, Bond PL, Banfield JF. Characteristics of attachment and growth of Thiobacillus caldus on sulphide minerals: A chemotactic response to sulphur minerals? Environmental Microbiology. 2: 324-332. PMID 11200434 DOI: 10.1046/j.1462-2920.2000.00111.x  1
2000 Labrenz M, Druschel GK, Thomsen-Ebert T, Gilbert B, Welch SA, Kemner KM, Logan GA, Summons RE, De Stasio G, Bond PL, Lai B, Kelly SD, Banfield JF. Formation of sphalerite (ZnS) deposits in natural biofilms of sulfate-reducing bacteria. Science (New York, N.Y.). 290: 1744-7. PMID 11099408 DOI: 10.1126/science.290.5497.1744  0.56
2000 Bond PL, Druschel GK, Banfield JF. Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems. Applied and Environmental Microbiology. 66: 4962-71. PMID 11055950 DOI: 10.1128/AEM.66.11.4962-4971.2000  1
2000 Bond PL, Smriga SP, Banfield JF. Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site. Applied and Environmental Microbiology. 66: 3842-9. PMID 10966399 DOI: 10.1128/AEM.66.9.3842-3849.2000  1
2000 Banfield JF, Welch SA, Zhang H, Ebert TT, Penn RL. Aggregation-based crystal growth and microstructure development in natural iron oxyhydroxide biomineralization products. Science (New York, N.Y.). 289: 751-4. PMID 10926531 DOI: 10.1126/science.289.5480.751  0.56
2000 Banfield JF, Marshall CR. Genomics and the geosciences Science. 287: 605-606. PMID 10691543 DOI: 10.1126/science.287.5453.605  1
2000 Edwards KJ, Bond PL, Druschel GK, McGuire MM, Hamers RJ, Banfield JF. Geochemical and biological aspects of sulfide mineral dissolution: Lessons from Iron Mountain, California Chemical Geology. 169: 383-397. DOI: 10.1016/S0009-2541(00)00216-3  1
2000 Taunton AE, Welch SA, Banfield JF. Microbial controls on phosphate and lanthanide distributions during granite weathering and soil formation Chemical Geology. 169: 371-382. DOI: 10.1016/S0009-2541(00)00215-1  1
1999 Banfield JF, Barker WW, Welch SA, Taunton A. Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere. Proceedings of the National Academy of Sciences of the United States of America. 96: 3404-11. PMID 10097050 DOI: 10.1073/pnas.96.7.3404  0.56
1999 Penn RL, Banfield JF. Morphology development and crystal growth in nanocrystalline aggregates under hydrothermal conditions: Insights from titania Geochimica Et Cosmochimica Acta. 63: 1549-1557. DOI: 10.1016/S0016-7037(99)00037-X  1
1998 Penn RL, Banfield JF. Imperfect oriented attachment: dislocation generation in defect-free nanocrystals Science (New York, N.Y.). 281: 969-71. PMID 9703506  1
1995 Banfield JF, Ferruzzi GG, Casey WH, Westrich HR. HRTEM study comparing naturally and experimentally weathered pyroxenoids Geochimica Et Cosmochimica Acta. 59: 19-31. DOI: 10.1016/0016-7037(94)00372-S  1
1993 Veblen DR, Banfield JF, Guthrie GD, Heaney PJ, Ilton ES, Livi KJ, Smelik EA. High-resolution and analytical transmission electron microscopy of mineral disorder and reactions. Science (New York, N.Y.). 260: 1465-72. PMID 17739802 DOI: 10.1126/science.260.5113.1465  1
1991 Banfield JF, Jones BF, Veblen DR. An AEM-TEM study of weathering and diagenesis, Abert Lake, Oregon: II. Diagenetic modification of the sedimentary assemblage Geochimica Et Cosmochimica Acta. 55: 2795-2810. DOI: 10.1016/0016-7037(91)90445-B  1
1991 Banfield JF, Jones BF, Veblen DR. An aem-tem study of weathering and diagenesis, Abert Lake, Oregon: I. Weathering reactions in the volcanics Geochimica Et Cosmochimica Acta. 55: 2781-2793. DOI: 10.1016/0016-7037(91)90444-A  1
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