Year |
Citation |
Score |
2023 |
Wen S, Wang M, Qian X, Li Y, Wang K, Choi J, Pennesi ME, Yang P, Marra M, Koenekoop RK, Lopez I, Matynia A, Gorin M, Sui R, Yao F, ... ... Chen R, et al. Systematic assessment of the contribution of structural variants to inherited retinal diseases. Human Molecular Genetics. PMID 36811936 DOI: 10.1093/hmg/ddad032 |
0.306 |
|
2023 |
Wen S, Wang M, Qian X, Li Y, Wang K, Choi J, Pennesi ME, Yang P, Marra M, Koenekoop RK, Lopez I, Matynia A, Gorin M, Sui R, Yao F, ... ... Chen R, et al. Systematic assessment of the contribution of structural variants to inherited retinal diseases. Biorxiv : the Preprint Server For Biology. PMID 36789417 DOI: 10.1101/2023.01.02.522522 |
0.307 |
|
2023 |
Cai Y, Chen R, Gao S, Li W, Liu Y, Su G, Song M, Jiang M, Jiang C, Zhang X. Artificial intelligence applied in neoantigen identification facilitates personalized cancer immunotherapy. Frontiers in Oncology. 12: 1054231. PMID 36698417 DOI: 10.3389/fonc.2022.1054231 |
0.328 |
|
2022 |
De Jong HN, Dewey FE, Cordero P, Victorio RA, Kirillova A, Huang Y, Madhvani R, Seo K, Werdich AA, Lan F, Orcholski M, Robert Liu W, Erbilgin A, Wheeler MT, Chen R, et al. Wnt Signaling Interactor WTIP (Wilms Tumor Interacting Protein) Underlies Novel Mechanism for Cardiac Hypertrophy. Circulation. Genomic and Precision Medicine. 101161CIRCGEN1210035. PMID 35671065 DOI: 10.1161/CIRCGEN.121.003563 |
0.361 |
|
2020 |
Wang J, Liu H, Bertrand RE, Sarrion-Perdigones A, Gonzalez Y, Venken KJT, Chen R. A novel statistical method for interpreting the pathogenicity of rare variants. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 32884132 DOI: 10.1038/S41436-020-00948-3 |
0.339 |
|
2020 |
Go YM, Zhang J, Fernandes J, Litwin C, Chen R, Wensel TG, Jones DP, Cai J, Chen Y. MTOR-initiated metabolic switch and degeneration in the retinal pigment epithelium. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32721041 DOI: 10.1096/Fj.202000612R |
0.309 |
|
2020 |
Cherry TJ, Yang MG, Harmin DA, Tao P, Timms AE, Bauwens M, Allikmets R, Jones EM, Chen R, De Baere E, Greenberg ME. Mapping the -regulatory architecture of the human retina reveals noncoding genetic variation in disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 32265282 DOI: 10.1073/Pnas.1922501117 |
0.332 |
|
2020 |
Devlin DJ, Agrawal-Zaneveld S, Nozawa K, Han X, Moye AR, Liang Q, Harnish JM, Matzuk MM, Chen R. Knockout of mouse receptor accessory protein 6 (REEP6) leads to sperm function and morphology defects. Biology of Reproduction. PMID 32101290 DOI: 10.1093/Biolre/Ioaa024 |
0.308 |
|
2020 |
Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, ... ... Chen R, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6 |
0.37 |
|
2020 |
Dharmat R, Kim S, Li Y, Chen R. Single-Cell Capture, RNA-seq, and Transcriptome Analysis from the Neural Retina. Methods in Molecular Biology (Clifton, N.J.). 2092: 159-186. PMID 31786788 DOI: 10.1007/978-1-0716-0175-4_12 |
0.317 |
|
2019 |
Liang Q, Dharmat R, Owen L, Shakoor A, Li Y, Kim S, Vitale A, Kim I, Morgan D, Liang S, Wu N, Chen K, DeAngelis MM, Chen R. Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling. Nature Communications. 10: 5743. PMID 31848347 DOI: 10.1038/S41467-019-12917-9 |
0.314 |
|
2019 |
Gunasekara CJ, Scott CA, Laritsky E, Baker MS, MacKay H, Duryea JD, Kessler NJ, Hellenthal G, Wood AC, Hodges KR, Gandhi M, Hair AB, Silver MJ, Moore SE, Prentice AM, ... ... Chen R, et al. A genomic atlas of systemic interindividual epigenetic variation in humans. Genome Biology. 20: 105. PMID 31155008 DOI: 10.1186/S13059-019-1708-1 |
0.313 |
|
2019 |
Park YH, Snook JD, Ostrin EJ, Kim S, Chen R, Frankfort BJ. Transcriptomic profiles of retinal ganglion cells are defined by the magnitude of intraocular pressure elevation in adult mice. Scientific Reports. 9: 2594. PMID 30796289 DOI: 10.1038/S41598-019-39141-1 |
0.323 |
|
2019 |
Moshiri A, Chen R, Kim S, Harris RA, Li Y, Raveendran M, Davis S, Liang Q, Pomerantz O, Wang J, Garzel L, Cameron A, Yiu G, Stout JT, Huang Y, et al. A nonhuman primate model of inherited retinal disease. The Journal of Clinical Investigation. PMID 30667376 DOI: 10.1172/Jci123980 |
0.321 |
|
2019 |
Jeong M, Kim S, Li Y, Chen R, Lulla P, Goodell M. Single Cell Profiling of DNMT3A-Mutant Progenitors Reveals LY86 As a Novel Pre-Leukemia Marker and Potential Therapeutic Target Blood. 134: 2724-2724. DOI: 10.1182/Blood-2019-123597 |
0.345 |
|
2018 |
Wang J, Zhao L, Wang X, Chen Y, Xu M, Soens ZT, Ge Z, Wang PR, Wang F, Chen R. GRIPT: a novel case-control analysis method for Mendelian disease gene discovery. Genome Biology. 19: 203. PMID 30477545 DOI: 10.1186/S13059-018-1579-X |
0.36 |
|
2018 |
Chen R, Xia L, Tu K, Duan M, Kukurba K, Li-Pook-Than J, Xie D, Snyder M. Longitudinal personal DNA methylome dynamics in a human with a chronic condition. Nature Medicine. PMID 30397358 DOI: 10.1038/S41591-018-0237-X |
0.464 |
|
2018 |
Huang J, Fu J, Fu S, Yang L, Nie K, Duan C, Cheng J, Li Y, Lv H, Chen R, Liu L, Fu J. Diagnostic value of a combination of next-generation sequencing, chorioretinal imaging and metabolic analysis: lessons from a consanguineous Chinese family with gyrate atrophy of the choroid and retina stemming from a novel OAT variant. The British Journal of Ophthalmology. PMID 30366948 DOI: 10.1136/Bjophthalmol-2018-312347 |
0.35 |
|
2018 |
Fu J, Ma L, Cheng J, Yang L, Wei C, Fu S, Lv H, Chen R, Fu J. A novel, homozygous nonsense variant of the CDHR1 gene in a Chinese family causes autosomal recessive retinal dystrophy by NGS-based genetic diagnosis. Journal of Cellular and Molecular Medicine. PMID 30160356 DOI: 10.1111/Jcmm.13841 |
0.366 |
|
2018 |
Zou X, Fu Q, Fang S, Li H, Ge Z, Yang L, Xu M, Sun Z, Li H, Li Y, Dong F, Chen R, Sui R. PHENOTYPIC VARIABILITY OF RECESSIVE RDH12-ASSOCIATED RETINAL DYSTROPHY. Retina (Philadelphia, Pa.). PMID 30134391 DOI: 10.1097/Iae.0000000000002242 |
0.309 |
|
2018 |
Zaneveld SA, Eblimit A, Liang Q, Bertrand R, Wu N, Liu H, Nguyen Q, Zaneveld J, Wang K, Li Y, Chen R. Gene Therapy Rescues Retinal Degeneration in Reep6 Mutant Mice. Human Gene Therapy. PMID 30101608 DOI: 10.1089/Hum.2018.078 |
0.31 |
|
2018 |
Zhang L, Sun Z, Zhao P, Huang L, Xu M, Yang Y, Chen X, Lu F, Zhang X, Wang H, Zhang S, Liu W, Jiang Z, Ma S, Chen R, et al. Whole exome sequencing revealed HKDC1 as a candidate gene associated with autosomal-recessive retinitis pigmentosa. Human Molecular Genetics. PMID 30085091 DOI: 10.1093/Hmg/Ddy281 |
0.355 |
|
2018 |
Li H, Jones EM, Li H, Yang L, Sun Z, Yuan Z, Chen R, Dong F, Sui R. Clinical and genetic features of eight Chinese autosomal-dominant optic atrophy pedigrees with six novel OPA1 pathogenic variants. Ophthalmic Genetics. 1-8. PMID 29952689 DOI: 10.1080/13816810.2018.1466337 |
0.331 |
|
2018 |
Dharmat R, Eblimit A, Robichaux MA, Zhang Z, Nguyen TT, Jung SY, He F, Jain A, Li Y, Qin J, Overbeek P, Roepman R, Mardon G, Wensel TG, Chen R. SPATA7 maintains a novel photoreceptor-specific zone in the distal connecting cilium. The Journal of Cell Biology. PMID 29899041 DOI: 10.1083/Jcb.201712117 |
0.329 |
|
2018 |
Eblimit A, Zaneveld SA, Liu W, Thomas K, Wang K, Li Y, Mardon G, Chen R. NMNAT1 E257K variant, associated with Leber Congenital Amaurosis (LCA9), causes a mild retinal degeneration phenotype. Experimental Eye Research. PMID 29674119 DOI: 10.1016/J.Exer.2018.04.010 |
0.309 |
|
2018 |
Im H, Rao V, Sridhar K, Bentley J, Mishra T, Chen R, Hall J, Graber A, Zhang Y, Li X, Mias GI, Snyder MP, Greenberg PL. Distinct transcriptomic and exomic abnormalities within myelodysplastic syndrome marrow cells. Leukemia & Lymphoma. 1-11. PMID 29616851 DOI: 10.1080/10428194.2018.1452210 |
0.768 |
|
2018 |
Imani S, Cheng J, Shasaltaneh MD, Wei C, Yang L, Fu S, Zou H, Khan MA, Zhang X, Chen H, Zhang D, Duan C, Lv H, Li Y, Chen R, et al. Genetic identification and molecular modeling characterization reveal a novel PROM1 mutation in Stargardt4-like macular dystrophy. Oncotarget. 9: 122-141. PMID 29416601 DOI: 10.18632/Oncotarget.22343 |
0.357 |
|
2017 |
DuPont M, Jones EM, Xu M, Chen R. Investigating the disease association of USH2A p.C759F variant by leveraging large retinitis pigmentosa cohort data. Ophthalmic Genetics. 1-2. PMID 29283788 DOI: 10.1080/13816810.2017.1418388 |
0.338 |
|
2017 |
Imani S, Cheng J, Mobasher-Jannat A, Wei C, Fu S, Yang L, Jadidi K, Khosravi MH, Mohazzab-Torabi S, Shasaltaneh MD, Li Y, Chen R, Fu J. Identification of a novel RPGRIP1 mutation in an Iranian family with leber congenital amaurosis by exome sequencing. Journal of Cellular and Molecular Medicine. PMID 29193763 DOI: 10.1111/Jcmm.13454 |
0.346 |
|
2017 |
Porto FBO, Jones EM, Branch J, Soens ZT, Maia IM, Sena IFG, Sampaio SAM, Simões RT, Chen R. Molecular Screening of 43 Brazilian Families Diagnosed with Leber Congenital Amaurosis or Early-Onset Severe Retinal Dystrophy. Genes. 8. PMID 29186038 DOI: 10.3390/Genes8120355 |
0.361 |
|
2017 |
Yuan Z, Li B, Xu M, Chang EY, Li H, Yang L, Wu S, Soens ZT, Li Y, Wong LC, Lewis RA, Sui R, Chen R. The phenotypic variability of HK1-associated retinal dystrophy. Scientific Reports. 7: 7051. PMID 28765615 DOI: 10.1038/S41598-017-07629-3 |
0.313 |
|
2017 |
Soens ZT, Branch J, Wu S, Yuan Z, Li Y, Li H, Wang K, Xu M, Rajan L, Motta FL, Simões RT, Lopez-Solache I, Ajlan R, Birch DG, Zhao P, ... ... Chen R, et al. Leveraging splice-affecting variant predictors and a minigene validation system to identify Mendelian disease-causing variants amongst exon-captured variants of uncertain significance. Human Mutation. PMID 28714225 DOI: 10.1002/Humu.23294 |
0.384 |
|
2017 |
Agrawal SA, Burgoyne T, Eblimit A, Bellingham J, Parfitt DA, Lane A, Nichols R, Asomugha C, Hayes MJ, Munro PM, Xu M, Wang K, Futter CE, Li Y, Chen R, et al. REEP6 Deficiency Leads to Retinal Degeneration through Disruption of ER Homeostasis and Protein Trafficking. Human Molecular Genetics. PMID 28475715 DOI: 10.1093/Hmg/Ddx149 |
0.314 |
|
2017 |
Xu M, Xie YA, Abouzeid H, Gordon CT, Fiorentino A, Sun Z, Lehman A, Osman IS, Dharmat R, Riveiro-Alvarez R, Bapst-Wicht L, Babino D, Arno G, Busetto V, Zhao L, ... ... Chen R, et al. Mutations in the Spliceosome Component CWC27 Cause Retinal Degeneration with or without Additional Developmental Anomalies. American Journal of Human Genetics. PMID 28285769 DOI: 10.1016/J.Ajhg.2017.02.008 |
0.342 |
|
2017 |
Chen Y, Zhao L, Wang Y, Cao M, Gelowani V, Xu M, Agrawal SA, Li Y, Daiger SP, Gibbs R, Wang F, Chen R. SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. Bmc Bioinformatics. 18: 147. PMID 28253855 DOI: 10.1186/S12859-017-1566-3 |
0.367 |
|
2017 |
Keser V, Khan A, Siddiqui S, Lopez I, Ren H, Qamar R, Nadaf J, Majewski J, Chen R, Koenekoop RK. The Genetic Causes of Nonsyndromic Congenital Retinal Detachment: A Genetic and Phenotypic Study of Pakistani Families. Investigative Ophthalmology & Visual Science. 58: 1028-1036. PMID 28192794 DOI: 10.1167/Iovs.16-20281 |
0.326 |
|
2017 |
Gui S, Rice AP, Chen R, Wu L, Liu J, Miao H. A scalable algorithm for structure identification of complex gene regulatory network from temporal expression data. Bmc Bioinformatics. 18: 74. PMID 28143596 DOI: 10.1186/S12859-017-1489-Z |
0.316 |
|
2017 |
Takahashi S, Andreoletti G, Chen R, Munehira Y, Batra A, Afzal NA, Beattie RM, Bernstein JA, Ennis S, Snyder M. De novo and rare mutations in the HSPA1L heat shock gene associated with inflammatory bowel disease. Genome Medicine. 9: 8. PMID 28126021 DOI: 10.1186/S13073-016-0394-9 |
0.42 |
|
2017 |
Zhu L, Cheng J, Zhou B, Wei C, Yang W, Jiang D, Ijaz I, Tan X, Chen R, Fu J. Diagnosis for choroideremia in a large Chinese pedigree by next‑generation sequencing (NGS) and non‑invasive prenatal testing (NIPT). Molecular Medicine Reports. PMID 28098911 DOI: 10.3892/Mmr.2017.6119 |
0.319 |
|
2016 |
Xue C, Raveendran M, Harris RA, Fawcett GL, Liu X, White S, Dahdouli M, Rio Deiros D, Below JE, Salerno W, Cox L, Fan G, Ferguson B, Horvath J, Johnson Z, ... ... Chen R, et al. The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences. Genome Research. 26: 1651-1662. PMID 27934697 DOI: 10.1101/Gr.204255.116 |
0.369 |
|
2016 |
Arno G, Agrawal SA, Eblimit A, Bellingham J, Xu M, Wang F, Chakarova C, Parfitt DA, Lane A, Burgoyne T, Hull S, Carss KJ, Fiorentino A, Hayes MJ, Munro PM, ... ... Chen R, et al. Mutations in REEP6 Cause Autosomal-Recessive Retinitis Pigmentosa. American Journal of Human Genetics. PMID 27889058 DOI: 10.1016/J.Ajhg.2016.10.008 |
0.356 |
|
2016 |
Ventura MJ, Wheaton D, Xu M, Birch D, Bowne SJ, Sullivan LS, Daiger SP, Whitney AE, Jones RO, Moser AB, Chen R, Wangler MF. Diagnosis of a mild peroxisomal phenotype with next-generation sequencing. Molecular Genetics and Metabolism Reports. 9: 75-78. PMID 27872819 DOI: 10.1016/J.Ymgmr.2016.10.006 |
0.308 |
|
2016 |
Fu Q, Xu M, Chen X, Sheng X, Yuan Z, Liu Y, Li H, Sun Z, Li H, Yang L, Wang K, Zhang F, Li Y, Zhao C, Sui R, ... Chen R, et al. CEP78 is mutated in a distinct type of Usher syndrome. Journal of Medical Genetics. PMID 27627988 DOI: 10.1136/Jmedgenet-2016-104166 |
0.316 |
|
2016 |
Li J, Tang J, Feng Y, Xu M, Chen R, Zou X, Sui R, Chang EY, Lewis RA, Zhang VW, Wang J, Wong LC. Improved Diagnosis of Inherited Retinal Dystrophies by High-Fidelity PCR of ORF15 followed by Next-Generation Sequencing. The Journal of Molecular Diagnostics : Jmd. PMID 27620828 DOI: 10.1016/J.Jmoldx.2016.06.007 |
0.374 |
|
2016 |
Breman AM, Chow JC, U'Ren L, Normand EA, Qdaisat S, Zhao L, Henke DM, Chen R, Shaw CA, Jackson L, Yang Y, Vossaert L, Needham RH, Chang EJ, Campton D, et al. Evidence for feasibility of fetal trophoblastic cell-based noninvasive prenatal testing. Prenatal Diagnosis. PMID 27616633 DOI: 10.1097/01.Ogx.0000511968.79993.Bf |
0.31 |
|
2016 |
Zhang Q, Xu M, Verriotto JD, Li Y, Wang H, Gan L, Lam BL, Chen R. Next-generation sequencing-based molecular diagnosis of 35 Hispanic retinitis pigmentosa probands. Scientific Reports. 6: 32792. PMID 27596865 DOI: 10.1038/Srep32792 |
0.332 |
|
2016 |
Coppieters F, Ascari G, Dannhausen K, Nikopoulos K, Peelman F, Karlstetter M, Xu M, Brachet C, Meunier I, Tsilimbaris MK, Tsika C, Blazaki SV, Vergult S, Farinelli P, Van Laethem T, ... ... Chen R, et al. Isolated and Syndromic Retinal Dystrophy Caused by Biallelic Mutations in RCBTB1, a Gene Implicated in Ubiquitination. American Journal of Human Genetics. 99: 470-480. PMID 27486781 DOI: 10.1016/J.Ajhg.2016.06.017 |
0.323 |
|
2016 |
Jin M, Eblimit A, Pulikkathara M, Corr S, Chen R, Mardon G. Conditional knockout of retinal determination genes in differentiating cells in Drosophila. The Febs Journal. PMID 27257739 DOI: 10.1111/Febs.13772 |
0.345 |
|
2016 |
Jin M, Aibar S, Ge Z, Chen R, Aerts S, Mardon G. Identification of Novel Direct Targets of Drosophila Sine Oculis by Integration of Genome-wide Data Sets. Developmental Biology. PMID 27178668 DOI: 10.1016/J.Ydbio.2016.05.007 |
0.327 |
|
2016 |
Zhao L, Chen Y, Bajaj AO, Eblimit A, Xu M, Soens ZT, Wang F, Ge Z, Jung SY, He F, Li Y, Wensel TG, Qin J, Chen R. Integrative subcellular proteomic analysis allows accurate prediction of human disease causing genes. Genome Research. PMID 26912414 DOI: 10.1101/Gr.198911.115 |
0.372 |
|
2016 |
Xu M, Yamada T, Sun Z, Eblimit A, Lopez I, Wang F, Manya H, Xu S, Zhao L, Li Y, Kimchi A, Sharon D, Sui R, Endo T, Koenekoop RK, ... Chen R, et al. Mutations in POMGNT1 cause non-syndromic retinitis pigmentosa. Human Molecular Genetics. PMID 26908613 DOI: 10.1093/Hmg/Ddw022 |
0.324 |
|
2016 |
Tajiguli A, Xu M, Fu Q, Yiming R, Wang K, Li Y, Eblimit A, Sui R, Chen R, Aisa HA. Next-generation sequencing-based molecular diagnosis of 12 inherited retinal disease probands of Uyghur ethnicity. Scientific Reports. 6: 21384. PMID 26856745 DOI: 10.1038/Srep21384 |
0.367 |
|
2016 |
Soens ZT, Li Y, Zhao L, Eblimit A, Dharmat R, Li Y, Chen Y, Naqeeb M, Fajardo N, Lopez I, Sun Z, Koenekoop RK, Chen R. Hypomorphic mutations identified in the candidate Leber congenital amaurosis gene CLUAP1. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 26820066 DOI: 10.1038/Gim.2015.205 |
0.346 |
|
2015 |
Ge Z, Bowles K, Goetz K, Scholl HP, Wang F, Wang X, Xu S, Wang K, Wang H, Chen R. NGS-based Molecular diagnosis of 105 eyeGENE(®) probands with Retinitis Pigmentosa. Scientific Reports. 5: 18287. PMID 26667666 DOI: 10.1038/Srep18287 |
0.361 |
|
2015 |
Xu M, Eblimit A, Wang J, Li J, Wang F, Zhao L, Wang X, Xiao N, Li Y, Wong LC, Lewis RA, Chen R. ADIPOR1 is Mutated in Syndromic Retinitis Pigmentosa. Human Mutation. PMID 26662040 DOI: 10.1002/Humu.22940 |
0.35 |
|
2015 |
Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, ... ... Chen R, et al. Hemichordate genomes and deuterostome origins. Nature. PMID 26580012 DOI: 10.1038/Nature16150 |
0.384 |
|
2015 |
Jiang L, Liang X, Li Y, Wang J, Zaneveld JE, Wang H, Xu S, Wang K, Wang B, Chen R, Sui R. Comprehensive molecular diagnosis of 67 Chinese Usher syndrome probands: high rate of ethnicity specific mutations in Chinese USH patients. Orphanet Journal of Rare Diseases. 10: 110. PMID 26338283 DOI: 10.1186/S13023-015-0329-3 |
0.345 |
|
2015 |
Xu M, Yang L, Wang F, Li H, Wang X, Wang W, Ge Z, Wang K, Zhao L, Li H, Li Y, Sui R, Chen R. Mutations in human IFT140 cause non-syndromic retinal degeneration. Human Genetics. PMID 26216056 DOI: 10.1007/S00439-015-1586-X |
0.384 |
|
2015 |
Zhou Q, Cheng J, Yang W, Tania M, Wang H, Khan MA, Duan C, Zhu L, Chen R, Lv H, Fu J. Identification of a Novel Heterozygous Missense Mutation in the CACNA1F Gene in a Chinese Family with Retinitis Pigmentosa by Next Generation Sequencing. Biomed Research International. 2015: 907827. PMID 26075273 DOI: 10.1155/2015/907827 |
0.328 |
|
2015 |
Xu M, Gelowani V, Eblimit A, Wang F, Young MP, Sawyer BL, Zhao L, Jenkins G, Creel DJ, Wang K, Ge Z, Wang H, Li Y, Hartnett ME, Chen R. ATF6 Is Mutated in Early Onset Photoreceptor Degeneration With Macular Involvement. Investigative Ophthalmology & Visual Science. 56: 3889-95. PMID 26070061 DOI: 10.1167/Iovs.15-16778 |
0.35 |
|
2015 |
Sheng X, Chen X, Lei B, Chen R, Wang H, Zhang F, Rong W, Ha R, Liu Y, Zhao F, Yang P, Zhao C. Whole exome sequencing confirms the clinical diagnosis of Marfan syndrome combined with X-linked hypophosphatemia. Journal of Translational Medicine. 13: 179. PMID 26040324 DOI: 10.1186/S12967-015-0534-9 |
0.324 |
|
2015 |
Rhodes CJ, Im H, Cao A, Hennigs JK, Wang L, Sa S, Chen PI, Nickel NP, Miyagawa K, Hopper RK, Tojais NF, Li CG, Gu M, Spiekerkoetter E, Xian Z, ... Chen R, et al. RNAseq Reveals a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension. American Journal of Respiratory and Critical Care Medicine. PMID 26030479 DOI: 10.1164/Rccm.201408-1528Oc |
0.371 |
|
2015 |
Mazur EC, Vasquez YM, Li X, Kommagani R, Jiang L, Chen R, Lanz RB, Kovanci E, Gibbons WE, DeMayo FJ. Progesterone receptor transcriptome and cistrome in decidualized human endometrial stromal cells. Endocrinology. 156: 2239-53. PMID 25781565 DOI: 10.1210/En.2014-1566 |
0.368 |
|
2015 |
Chen R, Im H, Snyder M. Whole-Exome Enrichment with the Roche NimbleGen SeqCap EZ Exome Library SR Platform. Cold Spring Harbor Protocols. 2015: pdb.prot084855. PMID 25762419 DOI: 10.1101/Pdb.Prot084855 |
0.456 |
|
2015 |
Chen R, Im H, Snyder M. Whole-Exome Enrichment with the Illumina TruSeq Exome Enrichment Platform. Cold Spring Harbor Protocols. 2015: pdb.prot084863. PMID 25762418 DOI: 10.1101/Pdb.Prot084863 |
0.469 |
|
2015 |
Chen R, Im H, Snyder M. Whole-Exome Enrichment with the Agilent SureSelect Human All Exon Platform. Cold Spring Harbor Protocols. 2015: pdb.prot083659. PMID 25762417 DOI: 10.1101/Pdb.Prot083659 |
0.466 |
|
2015 |
Salvo J, Lyubasyuk V, Xu M, Wang H, Wang F, Nguyen D, Wang K, Luo H, Wen C, Shi C, Lin D, Zhang K, Chen R. Next-generation sequencing and novel variant determination in a cohort of 92 familial exudative vitreoretinopathy patients. Investigative Ophthalmology & Visual Science. 56: 1937-46. PMID 25711638 DOI: 10.1167/Iovs.14-16065 |
0.348 |
|
2015 |
Zhong H, Chen Y, Li Y, Chen R, Mardon G. CRISPR-engineered mosaicism rapidly reveals that loss of Kcnj13 function in mice mimics human disease phenotypes. Scientific Reports. 5: 8366. PMID 25666713 DOI: 10.1038/Srep08366 |
0.33 |
|
2015 |
Vasquez YM, Mazur EC, Li X, Kommagani R, Jiang L, Chen R, Lanz RB, Kovanci E, Gibbons WE, DeMayo FJ. FOXO1 is required for binding of PR on IRF4, novel transcriptional regulator of endometrial stromal decidualization. Molecular Endocrinology (Baltimore, Md.). 29: 421-33. PMID 25584414 DOI: 10.1210/Me.2014-1292 |
0.341 |
|
2015 |
Kmoch S, Majewski J, Ramamurthy V, Cao S, Fahiminiya S, Ren H, MacDonald IM, Lopez I, Sun V, Keser V, Khan A, Stránecký V, Hartmannová H, P?istoupilová A, Hoda?ová K, ... ... Chen R, et al. Mutations in PNPLA6 are linked to photoreceptor degeneration and various forms of childhood blindness. Nature Communications. 6: 5614. PMID 25574898 DOI: 10.1038/Ncomms6614 |
0.307 |
|
2015 |
Wang F, Li H, Xu M, Li H, Zhao L, Yang L, Zaneveld JE, Wang K, Li Y, Sui R, Chen R. A homozygous missense mutation in NEUROD1 is associated with nonsyndromic autosomal recessive retinitis pigmentosa. Investigative Ophthalmology & Visual Science. 56: 150-5. PMID 25477324 DOI: 10.1167/Iovs.14-15382 |
0.344 |
|
2015 |
Zaneveld J, Siddiqui S, Li H, Wang X, Wang H, Wang K, Li H, Ren H, Lopez I, Dorfman A, Khan A, Wang F, Salvo J, Gelowani V, Li Y, ... ... Chen R, et al. Comprehensive analysis of patients with Stargardt macular dystrophy reveals new genotype-phenotype correlations and unexpected diagnostic revisions. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 17: 262-70. PMID 25474345 DOI: 10.1038/Gim.2014.174 |
0.303 |
|
2015 |
Zhao L, Wang F, Wang H, Li Y, Alexander S, Wang K, Willoughby CE, Zaneveld JE, Jiang L, Soens ZT, Earle P, Simpson D, Silvestri G, Chen R. Next-generation sequencing-based molecular diagnosis of 82 retinitis pigmentosa probands from Northern Ireland. Human Genetics. 134: 217-30. PMID 25472526 DOI: 10.1007/S00439-014-1512-7 |
0.344 |
|
2015 |
Eblimit A, Nguyen TM, Chen Y, Esteve-Rudd J, Zhong H, Letteboer S, Van Reeuwijk J, Simons DL, Ding Q, Wu KM, Li Y, Van Beersum S, Moayedi Y, Xu H, Pickard P, ... ... Chen R, et al. Spata7 is a retinal ciliopathy gene critical for correct RPGRIP1 localization and protein trafficking in the retina. Human Molecular Genetics. 24: 1584-601. PMID 25398945 DOI: 10.1093/Hmg/Ddu573 |
0.316 |
|
2014 |
Wang F, Wang Y, Zhang B, Zhao L, Lyubasyuk V, Wang K, Xu M, Li Y, Wu F, Wen C, Bernstein PS, Lin D, Zhu S, Wang H, Zhang K, ... Chen R, et al. A missense mutation in HK1 leads to autosomal dominant retinitis pigmentosa. Investigative Ophthalmology & Visual Science. 55: 7159-64. PMID 25316723 DOI: 10.1167/Iovs.14-15520 |
0.339 |
|
2014 |
Yamamoto S, Jaiswal M, Charng WL, Gambin T, Karaca E, Mirzaa G, Wiszniewski W, Sandoval H, Haelterman NA, Xiong B, Zhang K, Bayat V, David G, Li T, Chen K, ... ... Chen R, et al. A drosophila genetic resource of mutants to study mechanisms underlying human genetic diseases. Cell. 159: 200-14. PMID 25259927 DOI: 10.1016/J.Cell.2014.09.002 |
0.362 |
|
2014 |
Haelterman NA, Jiang L, Li Y, Bayat V, Sandoval H, Ugur B, Tan KL, Zhang K, Bei D, Xiong B, Charng WL, Busby T, Jawaid A, David G, Jaiswal M, ... ... Chen R, et al. Large-scale identification of chemically induced mutations in Drosophila melanogaster. Genome Research. 24: 1707-18. PMID 25258387 DOI: 10.1101/Gr.174615.114 |
0.347 |
|
2014 |
Daiger SP, Bowne SJ, Sullivan LS, Blanton SH, Weinstock GM, Koboldt DC, Fulton RS, Larsen D, Humphries P, Humphries MM, Pierce EA, Chen R, Li Y. Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP). Advances in Experimental Medicine and Biology. 801: 123-9. PMID 24664689 DOI: 10.1007/978-1-4614-3209-8_16 |
0.326 |
|
2014 |
Enns GM, Shashi V, Bainbridge M, Gambello MJ, Zahir FR, Bast T, Crimian R, Schoch K, Platt J, Cox R, Bernstein JA, Scavina M, Walter RS, Bibb A, Jones M, ... Chen R, et al. Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 16: 751-8. PMID 24651605 DOI: 10.1038/Gim.2014.22 |
0.726 |
|
2014 |
Kuleshov V, Xie D, Chen R, Pushkarev D, Ma Z, Blauwkamp T, Kertesz M, Snyder M. Whole-genome haplotyping using long reads and statistical methods. Nature Biotechnology. 32: 261-6. PMID 24561555 DOI: 10.1038/Nbt.2833 |
0.514 |
|
2014 |
Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, et al. Toward more transparent and reproducible omics studies through a common metadata checklist and data publications. Omics : a Journal of Integrative Biology. 18: 10-4. PMID 24456465 DOI: 10.1089/Omi.2013.0149 |
0.715 |
|
2014 |
Kunde-Ramamoorthy G, Coarfa C, Laritsky E, Kessler NJ, Harris RA, Xu M, Chen R, Shen L, Milosavljevic A, Waterland RA. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing. Nucleic Acids Research. 42: e43. PMID 24391148 DOI: 10.1093/Nar/Gkt1325 |
0.331 |
|
2014 |
Wang F, Wang H, Tuan HF, Nguyen DH, Sun V, Keser V, Bowne SJ, Sullivan LS, Luo H, Zhao L, Wang X, Zaneveld JE, Salvo JS, Siddiqui S, Mao L, ... ... Chen R, et al. Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: identification of a novel genotype-phenotype correlation and clinical refinements. Human Genetics. 133: 331-45. PMID 24154662 DOI: 10.1007/S00439-013-1381-5 |
0.357 |
|
2014 |
Menon R, Im H, Zhang EY, Wu SL, Chen R, Snyder M, Hancock WS, Omenn GS. Distinct splice variants and pathway enrichment in the cell-line models of aggressive human breast cancer subtypes. Journal of Proteome Research. 13: 212-27. PMID 24111759 DOI: 10.1021/Pr400773V |
0.436 |
|
2014 |
Wei Y, Cabrero M, Jia Y, Zheng H, Yang H, Fang Z, Bohannan Z, Chen R, Wang H, Colla S, Wang X, Garcia-Manero G. Association Between Down-Regulation of EZH2 and Abnormal Karyotype, Response to Hypomethylation Treatment, and Patient Survival in Myelodysplastic Syndromes Blood. 124: 3241-3241. DOI: 10.1182/Blood.V124.21.3241.3241 |
0.32 |
|
2014 |
Im H, Rao V, Sridhar KJ, Chen R, Mias G, Zhang Y, Xiao L, Snyder MP, Greenberg PL. Transcriptomic Evaluation of CD34+ Marrow Cells from Myelodysplastic Syndrome (MDS) Patients Blood. 124: 1894-1894. DOI: 10.1182/Blood.V124.21.1894.1894 |
0.764 |
|
2013 |
Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, et al. Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data. 1: 196-201. PMID 27447251 DOI: 10.1089/big.2013.0039 |
0.7 |
|
2013 |
Mias GI, Chen R, Zhang Y, Sridhar K, Sharon D, Xiao L, Im H, Snyder MP, Greenberg PL. Specific plasma autoantibody reactivity in myelodysplastic syndromes. Scientific Reports. 3: 3311. PMID 24264604 DOI: 10.1038/Srep03311 |
0.743 |
|
2013 |
Dimicoli S, Wei Y, Bueso-Ramos C, Yang H, Dinardo C, Jia Y, Zheng H, Fang Z, Nguyen M, Pierce S, Chen R, Wang H, Wu C, Garcia-Manero G. Overexpression of the toll-like receptor (TLR) signaling adaptor MYD88, but lack of genetic mutation, in myelodysplastic syndromes. Plos One. 8: e71120. PMID 23976989 DOI: 10.1371/Journal.Pone.0071120 |
0.317 |
|
2013 |
Wang X, Wang H, Sun V, Tuan HF, Keser V, Wang K, Ren H, Lopez I, Zaneveld JE, Siddiqui S, Bowles S, Khan A, Salvo J, Jacobson SG, Iannaccone A, ... ... Chen R, et al. Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing. Journal of Medical Genetics. 50: 674-88. PMID 23847139 DOI: 10.1136/Jmedgenet-2013-101558 |
0.311 |
|
2013 |
Chen R, Giliani S, Lanzi G, Mias GI, Lonardi S, Dobbs K, Manis J, Im H, Gallagher JE, Phanstiel DH, Euskirchen G, Lacroute P, Bettinger K, Moratto D, Weinacht K, et al. Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias. The Journal of Allergy and Clinical Immunology. 132: 656-664.e17. PMID 23830146 DOI: 10.1016/J.Jaci.2013.06.013 |
0.743 |
|
2013 |
Li Y, Jiang Y, Chen Y, Karandikar U, Hoffman K, Chattopadhyay A, Mardon G, Chen R. optix functions as a link between the retinal determination network and the dpp pathway to control morphogenetic furrow progression in Drosophila. Developmental Biology. 381: 50-61. PMID 23792115 DOI: 10.1016/J.Ydbio.2013.06.015 |
0.307 |
|
2013 |
Fu Q, Wang F, Wang H, Xu F, Zaneveld JE, Ren H, Keser V, Lopez I, Tuan HF, Salvo JS, Wang X, Zhao L, Wang K, Li Y, Koenekoop RK, ... Chen R, et al. Next-generation sequencing-based molecular diagnosis of a Chinese patient cohort with autosomal recessive retinitis pigmentosa. Investigative Ophthalmology & Visual Science. 54: 4158-66. PMID 23661369 DOI: 10.1167/Iovs.13-11672 |
0.329 |
|
2013 |
Chen Y, Hong J, Cui W, Zaneveld J, Wang W, Gibbs R, Xiao Y, Chen R. CGAP-Align: A High Performance DNA Short Read Alignment Tool Plos One. 8. PMID 23593381 DOI: 10.1371/Journal.Pone.0061033 |
0.305 |
|
2013 |
Haase Gilbert E, Kwak SJ, Chen R, Mardon G. Drosophila signal peptidase complex member Spase12 is required for development and cell differentiation. Plos One. 8: e60908. PMID 23573290 DOI: 10.1371/Journal.Pone.0060908 |
0.319 |
|
2013 |
Clark MJ, Chen R, Snyder M. Exome sequencing by targeted enrichment. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit7.12. PMID 23547016 DOI: 10.1002/0471142727.Mb0712S102 |
0.482 |
|
2013 |
Zaneveld J, Wang F, Wang X, Chen R. Dawn of ocular gene therapy: implications for molecular diagnosis in retinal disease. Science China. Life Sciences. 56: 125-33. PMID 23393028 DOI: 10.1007/S11427-013-4443-Y |
0.368 |
|
2013 |
Perrault I, Estrada-Cuzcano A, Lopez I, Kohl S, Li S, Testa F, Zekveld-Vroon R, Wang X, Pomares E, Andorf J, Aboussair N, Banfi S, Delphin N, den Hollander AI, Edelson C, ... ... Chen R, et al. Union makes strength: a worldwide collaborative genetic and clinical study to provide a comprehensive survey of RD3 mutations and delineate the associated phenotype. Plos One. 8: e51622. PMID 23308101 DOI: 10.1371/Journal.Pone.0051622 |
0.327 |
|
2013 |
Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, et al. A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17. Journal of Proteome Research. 12: 45-57. PMID 23259914 DOI: 10.1021/Pr300985J |
0.732 |
|
2013 |
Chen R, Snyder M. Promise of personalized omics to precision medicine. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 5: 73-82. PMID 23184638 DOI: 10.1002/Wsbm.1198 |
0.478 |
|
2013 |
Luo M, Jeong M, Sun D, Park H, Yang L, Wang H, Chen R, Darlington G, Li W, Goodell MA. Long Non-Coding RNAs Control Hematopoietic Stem Cells (HSC) Function Blood. 122: 48-48. DOI: 10.1182/Blood.V122.21.48.48 |
0.328 |
|
2013 |
Wei Y, Jia Y, Zheng H, Yang H, Chen R, Wang H, Wang X, Garcia-Manero G. Assessment Of EZH2 Expression In CD34+ Bone Marrow Progenitor Cells Of Patients Of Myelodysplastic Syndromes (MDS) Blood. 122: 2805-2805. DOI: 10.1182/Blood.V122.21.2805.2805 |
0.339 |
|
2013 |
Jeong M, Sun D, Luo M, Huang Y, Ko M, Chavez L, Challen GA, Rodriguez B, Zhang X, Yang L, Wang H, Chen R, Hannah R, Kim S, Lee J, et al. Large Conserved Domains Of Low DNA Methylation Maintained By 5-Hydroxymethycytosine and Dnmt3a Blood. 122: 2406-2406. DOI: 10.1182/Blood.V122.21.2406.2406 |
0.336 |
|
2013 |
Menon R, Im H, Snyder M, Zhang E(, Chen R, Wu S, Hancock WS, Omenn GS. Abstract B38: Splice variants in aggressive human breast cancer subtypes Cancer Research. 73. DOI: 10.1158/1538-7445.Fbcr13-B38 |
0.429 |
|
2012 |
Chaki M, Airik R, Ghosh AK, Giles RH, Chen R, Slaats GG, Wang H, Hurd TW, Zhou W, Cluckey A, Gee HY, Ramaswami G, Hong CJ, Hamilton BA, Cervenka I, et al. Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling. Cell. 150: 533-48. PMID 22863007 DOI: 10.1016/J.Cell.2012.06.028 |
0.302 |
|
2012 |
Chen R, Snyder M. Systems biology: personalized medicine for the future? Current Opinion in Pharmacology. 12: 623-8. PMID 22858243 DOI: 10.1016/J.Coph.2012.07.011 |
0.462 |
|
2012 |
Koenekoop RK, Wang H, Majewski J, Wang X, Lopez I, Ren H, Chen Y, Li Y, Fishman GA, Genead M, Schwartzentruber J, Solanki N, Traboulsi EI, Cheng J, Logan CV, ... ... Chen R, et al. Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration. Nature Genetics. 44: 1035-9. PMID 22842230 DOI: 10.1038/Ng.2356 |
0.361 |
|
2012 |
Kang HP, Yang X, Chen R, Zhang B, Corona E, Schadt EE, Butte AJ. Integration of disease-specific single nucleotide polymorphisms, expression quantitative trait loci and coexpression networks reveal novel candidate genes for type 2 diabetes. Diabetologia. 55: 2205-13. PMID 22584726 DOI: 10.1007/S00125-012-2568-3 |
0.312 |
|
2012 |
Sun N, Yazawa M, Liu J, Han L, Sanchez-Freire V, Abilez OJ, Navarrete EG, Hu S, Wang L, Lee A, Pavlovic A, Lin S, Chen R, Hajjar RJ, Snyder MP, et al. Patient-specific induced pluripotent stem cells as a model for familial dilated cardiomyopathy. Science Translational Medicine. 4: 130ra47. PMID 22517884 DOI: 10.1126/Scitranslmed.3003552 |
0.421 |
|
2012 |
Chen R, Mias GI, Li-Pook-Than J, Jiang L, Lam HY, Chen R, Miriami E, Karczewski KJ, Hariharan M, Dewey FE, Cheng Y, Clark MJ, Im H, Habegger L, Balasubramanian S, et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell. 148: 1293-307. PMID 22424236 DOI: 10.1016/J.Cell.2012.02.009 |
0.666 |
|
2012 |
Lam HY, Pan C, Clark MJ, Lacroute P, Chen R, Haraksingh R, O'Huallachain M, Gerstein MB, Kidd JM, Bustamante CD, Snyder M. Detecting and annotating genetic variations using the HugeSeq pipeline. Nature Biotechnology. 30: 226-9. PMID 22398614 DOI: 10.1038/Nbt.2134 |
0.711 |
|
2012 |
Paik YK, Jeong SK, Omenn GS, Uhlen M, Hanash S, Cho SY, Lee HJ, Na K, Choi EY, Yan F, Zhang F, Zhang Y, Snyder M, Cheng Y, Chen R, et al. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nature Biotechnology. 30: 221-3. PMID 22398612 DOI: 10.1038/Nbt.2152 |
0.552 |
|
2012 |
Zhi D, Chen R. Statistical guidance for experimental design and data analysis of mutation detection in rare monogenic mendelian diseases by exome sequencing. Plos One. 7: e31358. PMID 22348076 DOI: 10.1371/Journal.Pone.0031358 |
0.383 |
|
2012 |
Lam HY, Clark MJ, Chen R, Chen R, Natsoulis G, O'Huallachain M, Dewey FE, Habegger L, Ashley EA, Gerstein MB, Butte AJ, Ji HP, Snyder M. Performance comparison of whole-genome sequencing platforms. Nature Biotechnology. 30: 78-82. PMID 22178993 DOI: 10.1038/Nbt.2065 |
0.778 |
|
2012 |
Dimicoli S, Wei Y, Chen R, Bueso-Ramos CE, Pierce SA, Yang H, Jia Y, Zheng H, Fang Z, ganan-Gomez I, Nguyen M, Fernandez M, Kantarjian HM, Garcia-Manero G. Toll-Like Receptor (TLR) Signaling Adaptor Protein MYD88 in Myelodysplastic Syndromes (MDS) Blood. 120: 556-556. DOI: 10.1182/Blood.V120.21.556.556 |
0.318 |
|
2012 |
Bejar R, Stevenson KE, Stojanov P, Zaneveld JE, Bar-Natan M, Caughey B, Wang H, Garcia-Manero G, Kantarjian HM, Cutler C, Ritz J, Cibulskis K, Getz G, Steensma DP, Stone RM, ... Chen R, et al. Detection of Recurrent Mutations by Pooled Targeted Next-Generation Sequencing in MDS Patients Prior to Treatment with Hypomethylating Agents or Stem Cell Transplantation Blood. 120: 311-311. DOI: 10.1182/Blood.V120.21.311.311 |
0.352 |
|
2012 |
Jeong M, Luo M, Sun D, Darlington G, Hannah R, Gottgens B, Wang H, Chen R, Li W, Goodell MA. HSC Aging Epigenome: Widespread Alterations in DNA Methylation and Transcription. Blood. 120: 2329-2329. DOI: 10.1182/Blood.V120.21.2329.2329 |
0.337 |
|
2012 |
Lam HYK, Clark MJ, Chen R, Chen R, Natsoulis G, O'Huallachain M, Dewey FE, Habegger L, Ashley EA, Gerstein MB, Butte AJ, Ji HP, Snyder M. Erratum: Corrigendum: Performance comparison of whole-genome sequencing platforms Nature Biotechnology. 30: 562-562. DOI: 10.1038/Nbt0612-562E |
0.747 |
|
2011 |
Friedrich M, Chen R, Daines B, Bao R, Caravas J, Rai PK, Zagmajster M, Peck SB. Phototransduction and clock gene expression in the troglobiont beetle Ptomaphagus hirtus of Mammoth cave. The Journal of Experimental Biology. 214: 3532-41. PMID 21993781 DOI: 10.1242/Jeb.060368 |
0.324 |
|
2011 |
Clark MJ, Chen R, Lam HY, Karczewski KJ, Chen R, Euskirchen G, Butte AJ, Snyder M. Performance comparison of exome DNA sequencing technologies. Nature Biotechnology. 29: 908-14. PMID 21947028 DOI: 10.1038/Nbt.1975 |
0.512 |
|
2011 |
Wang X, Wang H, Cao M, Li Z, Chen X, Patenia C, Gore A, Abboud EB, Al-Rajhi AA, Lewis RA, Lupski JR, Mardon G, Zhang K, Muzny D, Gibbs RA, ... Chen R, et al. Whole-exome sequencing identifies ALMS1, IQCB1, CNGA3, and MYO7A mutations in patients with Leber congenital amaurosis. Human Mutation. 32: 1450-9. PMID 21901789 DOI: 10.1002/Humu.21587 |
0.367 |
|
2011 |
Fasolo J, Sboner A, Sun MG, Yu H, Chen R, Sharon D, Kim PM, Gerstein M, Snyder M. Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes. Genes & Development. 25: 767-78. PMID 21460040 DOI: 10.1101/Gad.1998811 |
0.743 |
|
2011 |
Daines B, Wang H, Wang L, Li Y, Han Y, Emmert D, Gelbart W, Wang X, Li W, Gibbs R, Chen R. The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Research. 21: 315-24. PMID 21177959 DOI: 10.1101/Gr.107854.110 |
0.326 |
|
2011 |
Wiszniewski W, Lewis RA, Stockton DW, Peng J, Mardon G, Chen R, Lupski JR. Potential involvement of more than one locus in trait manifestation for individuals with Leber congenital amaurosis. Human Genetics. 129: 319-27. PMID 21153841 DOI: 10.1007/S00439-010-0928-Y |
0.333 |
|
2010 |
Chen R, Snyder M. Yeast proteomics and protein microarrays. Journal of Proteomics. 73: 2147-57. PMID 20728591 DOI: 10.1016/J.Jprot.2010.08.003 |
0.478 |
|
2010 |
Sharon D, Chen R, Snyder M. Systems biology approaches to disease marker discovery. Disease Markers. 28: 209-24. PMID 20534906 DOI: 10.3233/Dma-2010-0707 |
0.776 |
|
2010 |
Wang H, Chattopadhyay A, Li Z, Daines B, Li Y, Gao C, Gibbs R, Zhang K, Chen R. Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing. Genome Research. 20: 981-8. PMID 20472684 DOI: 10.1101/Gr.102921.109 |
0.365 |
|
2010 |
Parikh A, Miranda ER, Katoh-Kurasawa M, Fuller D, Rot G, Zagar L, Curk T, Sucgang R, Chen R, Zupan B, Loomis WF, Kuspa A, Shaulsky G. Conserved developmental transcriptomes in evolutionarily divergent species. Genome Biology. 11: R35. PMID 20236529 DOI: 10.1186/Gb-2010-11-3-R35 |
0.322 |
|
2010 |
Counterman BA, Araujo-Perez F, Hines HM, Baxter SW, Morrison CM, Lindstrom DP, Papa R, Ferguson L, Joron M, Ffrench-Constant RH, Smith CP, Nielsen DM, Chen R, Jiggins CD, Reed RD, et al. Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in Heliconius erato. Plos Genetics. 6: e1000796. PMID 20140239 DOI: 10.1371/Journal.Pgen.1000796 |
0.326 |
|
2010 |
Wei Y, Chen R, Bueso-Ramos C, Yang H, Garcia-Manero G. Abstract 4800: Genome-wide CHIP-Seq analysis of histone methylation reveals modulators of NF-κB signaling and the histone demethylase JMJD3 as implicated in disease progression in myelodysplastic syndrome (MDS) Cancer Research. 70: 4800-4800. DOI: 10.1158/1538-7445.Am10-4800 |
0.326 |
|
2009 |
Daines B, Wang H, Li Y, Han Y, Gibbs R, Chen R. High-throughput multiplex sequencing to discover copy number variants in Drosophila. Genetics. 182: 935-41. PMID 19528327 DOI: 10.1534/Genetics.109.103218 |
0.369 |
|
2009 |
Wang H, den Hollander AI, Moayedi Y, Abulimiti A, Li Y, Collin RW, Hoyng CB, Lopez I, Abboud EB, Al-Rajhi AA, Bray M, Lewis RA, Lupski JR, Mardon G, Koenekoop RK, ... Chen R, et al. Mutations in SPATA7 cause Leber congenital amaurosis and juvenile retinitis pigmentosa. American Journal of Human Genetics. 84: 380-7. PMID 19268277 DOI: 10.1016/J.Ajhg.2009.02.005 |
0.327 |
|
2009 |
Li Y, Wang H, Peng J, Gibbs RA, Lewis RA, Lupski JR, Mardon G, Chen R. Mutation survey of known LCA genes and loci in the Saudi Arabian population. Investigative Ophthalmology & Visual Science. 50: 1336-43. PMID 18936139 DOI: 10.1167/Iovs.08-2589 |
0.331 |
|
2009 |
Wei Y, Chen R, Bueso-Ramos CE, Wang H, Song X, Wang J, Yao H, Nguyen M, Fernandez M, Yang H, Garcia-Manero G. Genome-Wide Chip-Seq Analysis of Histone Methylation Reveals Modulators of NF-κB Signaling and the Histone Demethylase JMJD3 as Implicated in Disease Progression in Myelodysplastic Syndrome (MDS). Blood. 114: 291-291. DOI: 10.1182/Blood.V114.22.291.291 |
0.326 |
|
2008 |
Srivatsan A, Han Y, Peng J, Tehranchi AK, Gibbs R, Wang JD, Chen R. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies Plos Genetics. 4. PMID 18670626 DOI: 10.1371/Journal.Pgen.1000139 |
0.374 |
|
2008 |
Papa R, Morrison CM, Walters JR, Counterman BA, Chen R, Halder G, Ferguson L, Chamberlain N, Ffrench-Constant R, Kapan DD, Jiggins CD, Reed RD, McMillan WO. Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies. Bmc Genomics. 9: 345. PMID 18647405 DOI: 10.1186/1471-2164-9-345 |
0.355 |
|
2007 |
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Chen R, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247 |
0.363 |
|
2006 |
Muzny DM, Scherer SE, Kaul R, Wang J, Yu J, Sudbrak R, Buhay CJ, Chen R, Cree A, Ding Y, Dugan-Rocha S, Gill R, Gunaratne P, Harris RA, Hawes AC, ... ... Chen R, et al. The DNA sequence, annotation and analysis of human chromosome 3. Nature. 440: 1194-8. PMID 16641997 DOI: 10.1038/Nature04728 |
0.346 |
|
2006 |
Scherer SE, Muzny DM, Buhay CJ, Chen R, Cree A, Ding Y, Dugan-Rocha S, Gill R, Gunaratne P, Harris RA, Hawes AC, Hernandez J, Hodgson AV, Hume J, Jackson A, et al. The finished DNA sequence of human chromosome 12. Nature. 440: 346-51. PMID 16541075 DOI: 10.1038/Nature04569 |
0.304 |
|
2006 |
Ostrin EJ, Li Y, Hoffman K, Liu J, Wang K, Zhang L, Mardon G, Chen R. Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless. Genome Research. 16: 466-76. PMID 16533912 DOI: 10.1101/Gr.4673006 |
0.33 |
|
2005 |
Pappu KS, Ostrin EJ, Middlebrooks BW, Sili BT, Chen R, Atkins MR, Gibbs R, Mardon G. Dual regulation and redundant function of two eye-specific enhancers of the Drosophila retinal determination gene dachshund. Development (Cambridge, England). 132: 2895-905. PMID 15930118 DOI: 10.1242/Dev.01869 |
0.301 |
|
2005 |
Chen R, Mardon G. Keeping an eye on the fly genome. Developmental Biology. 282: 285-93. PMID 15893305 DOI: 10.1016/J.Ydbio.2005.04.015 |
0.373 |
|
2005 |
Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/Gr.3059305 |
0.36 |
|
2004 |
Havlak P, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Weinstock GM, Gibbs RA. The Atlas genome assembly system Genome Research. 14: 721-732. PMID 15060016 DOI: 10.1101/Gr.2264004 |
0.352 |
|
2004 |
Chen R, Sodergren E, Weinstock GM, Gibbs RA. Dynamic building of a BAC clone tiling path for the rat genome sequencing project Genome Research. 14: 679-684. PMID 15060010 DOI: 10.1101/Gr.2171704 |
0.351 |
|
2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Chen R, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.376 |
|
2001 |
Chen R, Bouck JB, Weinstock GM, Gibbs RA. Comparing vertebrate whole-genome shotgun reads to the human genome Genome Research. 11: 1807-1816. PMID 11691844 DOI: 10.1101/Gr.203601 |
0.373 |
|
2001 |
Cai WW, Chen R, Gibbs RA, Bradley A. A clone-array pooled shotgun strategy for sequencing large genomes. Genome Research. 11: 1619-23. PMID 11591638 DOI: 10.1101/Gr.198101 |
0.35 |
|
Low-probability matches (unlikely to be authored by this person) |
2012 |
Luo M, Jeong M, Sun D, Wang H, Chen R, Li W, Darlington G, Goodell MA. Histone Alterations Are Associated with Hematopoietic Stem Cell (HSC) Differentiation and Aging Blood. 120: 1188-1188. DOI: 10.1182/Blood.V120.21.1188.1188 |
0.299 |
|
2011 |
Yang D, Xiong Y, Kim H, He Q, Li Y, Chen R, Songyang Z. Human telomeric proteins occupy selective interstitial sites. Cell Research. 21: 1013-27. PMID 21423278 DOI: 10.1038/Cr.2011.39 |
0.299 |
|
2019 |
Kwon OJ, Zhang Y, Li Y, Wei X, Zhang L, Chen R, Creighton CJ, Xin L. Functional Heterogeneity of Mouse Prostate Stromal Cells Revealed by Single-Cell RNA-Seq. Iscience. 13: 328-338. PMID 30878879 DOI: 10.1016/J.Isci.2019.02.032 |
0.299 |
|
2009 |
Yin G, Chen R, Fu H, Alvero A, Glackin C, Mor G. Abstract B75: TWISTing Stemness, Inflammation, and Proliferation of Epithelial Ovarian Cancer Cells through MIR199A2/214 Cancer Research. 69. DOI: 10.1158/0008-5472.Fbcr09-B75 |
0.298 |
|
2012 |
He J, Cui L, Zeng Y, Wang G, Zhou P, Yang Y, Ji L, Zhao Y, Chen J, Wang Z, Shi T, Zhang P, Chen R, Li X. REGγ is associated with multiple oncogenic pathways in human cancers. Bmc Cancer. 12: 75. PMID 22361172 DOI: 10.1186/1471-2407-12-75 |
0.297 |
|
2013 |
Wei Y, Chen R, Dimicoli S, Bueso-Ramos C, Neuberg D, Pierce S, Wang H, Yang H, Jia Y, Zheng H, Fang Z, Nguyen M, Ganan-Gomez I, Ebert B, Levine R, et al. Global H3K4me3 genome mapping reveals alterations of innate immunity signaling and overexpression of JMJD3 in human myelodysplastic syndrome CD34+ cells Leukemia. 27: 2177-2186. PMID 23538751 DOI: 10.1038/Leu.2013.91 |
0.296 |
|
2017 |
Sullivan LS, Bowne SJ, Koboldt DC, Cadena EL, Heckenlively JR, Branham KE, Wheaton DH, Jones KD, Ruiz RS, Pennesi ME, Yang P, Davis-Boozer D, Northrup H, Gurevich VV, Chen R, et al. A Novel Dominant Mutation in SAG, the Arrestin-1 Gene, Is a Common Cause of Retinitis Pigmentosa in Hispanic Families in the Southwestern United States. Investigative Ophthalmology & Visual Science. 58: 2774-2784. PMID 28549094 DOI: 10.1167/Iovs.16-21341 |
0.296 |
|
2015 |
Stuart BD, Choi J, Zaidi S, Xing C, Holohan B, Chen R, Choi M, Dharwadkar P, Torres F, Girod CE, Weissler J, Fitzgerald J, Kershaw C, Klesney-Tait J, Mageto Y, et al. Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening. Nature Genetics. 47: 512-7. PMID 25848748 DOI: 10.1038/Ng.3278 |
0.296 |
|
2017 |
Zhou Q, Yao F, Wang F, Li H, Chen R, Sui R. A heterozygous mutation in RPGR associated with X-linked retinitis pigmentosa in a patient with Turner syndrome mosaicism (45,X/46,XX). American Journal of Medical Genetics. Part A. PMID 29135076 DOI: 10.1002/Ajmg.A.38501 |
0.295 |
|
2014 |
Sun D, Luo M, Jeong M, Rodriguez B, Xia Z, Hannah R, Wang H, Le T, Faull KF, Chen R, Gu H, Bock C, Meissner A, Göttgens B, Darlington GJ, et al. Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal. Cell Stem Cell. 14: 673-88. PMID 24792119 DOI: 10.1016/J.Stem.2014.03.002 |
0.295 |
|
2018 |
Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, et al. A proteomic landscape of diffuse-type gastric cancer. Nature Communications. 9: 1012. PMID 29520031 DOI: 10.1038/S41467-018-03121-2 |
0.294 |
|
2013 |
Rahman AY, Usharraj AO, Misra BB, Thottathil GP, Jayasekaran K, Feng Y, Hou S, Ong SY, Ng FL, Lee LS, Tan HS, Sakaff MK, Teh BS, Khoo BF, Badai SS, ... ... Chen R, et al. Draft genome sequence of the rubber tree Hevea brasiliensis. Bmc Genomics. 14: 75. PMID 23375136 DOI: 10.1186/1471-2164-14-75 |
0.293 |
|
2017 |
Eblimit A, Agrawal S, Thomas K, Anastassov IA, Tajiguli A, Mardon G, Chen R. Conditional loss of Spata7 in photoreceptors causes progressive retinal degeneration in mice. Experimental Eye Research. PMID 29100828 DOI: 10.1016/J.Exer.2017.10.015 |
0.293 |
|
2013 |
Luo XJ, Deng M, Xie X, Huang L, Wang H, Jiang L, Liang G, Hu F, Tieu R, Chen R, Gan L. GATA3 controls the specification of prosensory domain and neuronal survival in the mouse cochlea. Human Molecular Genetics. 22: 3609-23. PMID 23666531 DOI: 10.1093/Hmg/Ddt212 |
0.292 |
|
2019 |
Fasham J, Arno G, Lin S, Xu M, Carss KJ, Hull S, Lane A, Robson AG, Wenger O, Self JE, Harlalka GV, Salter CG, Schema L, Moss TJ, Cheetham ME, ... ... Chen R, et al. Delineating the expanding phenotype associated with SCAPER gene mutation. American Journal of Medical Genetics. Part A. PMID 31192531 DOI: 10.1002/Ajmg.A.61202 |
0.292 |
|
2010 |
Kim BJ, Li Y, Zhang J, Xi Y, Li Y, Yang T, Jung SY, Pan X, Chen R, Li W, Wang Y, Qin J. Genome-wide reinforcement of cohesin binding at pre-existing cohesin sites in response to ionizing radiation in human cells. The Journal of Biological Chemistry. 285: 22784-92. PMID 20501661 DOI: 10.1074/Jbc.M110.134577 |
0.292 |
|
2011 |
Reed RD, Papa R, Martin A, Hines HM, Counterman BA, Pardo-Diaz C, Jiggins CD, Chamberlain NL, Kronforst MR, Chen R, Halder G, Nijhout HF, McMillan WO. optix drives the repeated convergent evolution of butterfly wing pattern mimicry. Science (New York, N.Y.). 333: 1137-41. PMID 21778360 DOI: 10.1126/Science.1208227 |
0.292 |
|
2015 |
Kimura W, Xiao F, Canseco DC, Muralidhar S, Thet S, Zhang HM, Abderrahman Y, Chen R, Garcia JA, Shelton JM, Richardson JA, Ashour AM, Asaithamby A, Liang H, Xing C, et al. Corrigendum: Hypoxia fate mapping identifies cycling cardiomyocytes in the adult heart. Nature. PMID 26700813 DOI: 10.1038/Nature16177 |
0.292 |
|
2014 |
Bejar R, Lord A, Stevenson K, Bar-Natan M, Pérez-Ladaga A, Zaneveld J, Wang H, Caughey B, Stojanov P, Getz G, Garcia-Manero G, Kantarjian H, Chen R, Stone RM, Neuberg D, et al. TET2 mutations predict response to hypomethylating agents in myelodysplastic syndrome patients. Blood. 124: 2705-12. PMID 25224413 DOI: 10.1182/Blood-2014-06-582809 |
0.29 |
|
2012 |
Mayle A, Challen GA, Sun D, Jeong M, Luo M, Chen R, Wang H, Li W, Goodell MA. Dnmt3b Is Dispensable for Hematopoietic Stem Cell Differentiation, but Acts Synergistically with Dnmt3a to Control the Balance Between Self-Renewal and Differentiation Blood. 120: 848-848. DOI: 10.1182/Blood.V120.21.848.848 |
0.29 |
|
2015 |
Guo F, Ding Y, Caberoy N, Alvarado G, Wang F, Chen R, Li W. ABCF1 extrinsically regulates retinal pigment epithelial cell phagocytosis. Molecular Biology of the Cell. 26: 2311-20. PMID 25904329 DOI: 10.1091/Mbc.E14-09-1343 |
0.288 |
|
2005 |
Zhong XB, Leng L, Beitin A, Chen R, McDonald C, Hsiao B, Jenison RD, Kang I, Park SH, Lee A, Gregersen P, Thuma P, Bray-Ward P, Ward DC, Bucala R. Simultaneous detection of microsatellite repeats and SNPs in the macrophage migration inhibitory factor (MIF) gene by thin-film biosensor chips and application to rural field studies. Nucleic Acids Research. 33: e121. PMID 16077028 DOI: 10.1093/Nar/Gni123 |
0.288 |
|
2019 |
MacKay H, Scott CA, Duryea JD, Baker MS, Laritsky E, Elson AE, Garland T, Fiorotto ML, Chen R, Li Y, Coarfa C, Simerly RB, Waterland RA. DNA methylation in AgRP neurons regulates voluntary exercise behavior in mice. Nature Communications. 10: 5364. PMID 31792207 DOI: 10.1038/S41467-019-13339-3 |
0.288 |
|
2011 |
Malovannaya A, Lanz RB, Jung SY, Bulynko Y, Le NT, Chan DW, Ding C, Shi Y, Yucer N, Krenciute G, Kim BJ, Li C, Chen R, Li W, Wang Y, et al. Analysis of the human endogenous coregulator complexome. Cell. 145: 787-99. PMID 21620140 DOI: 10.1016/J.Cell.2011.05.006 |
0.288 |
|
2012 |
Jusiak B, Abulimiti A, Haelterman N, Chen R, Mardon G. MAPK target sites of eyes absent are not required for eye development or survival in Drosophila. Plos One. 7: e50776. PMID 23251383 DOI: 10.1371/Journal.Pone.0050776 |
0.288 |
|
2015 |
Wang H, Wang X, Zou X, Xu S, Li H, Soens ZT, Wang K, Li Y, Dong F, Chen R, Sui R. Comprehensive Molecular Diagnosis of a Large Chinese Leber Congenital Amaurosis Cohort. Investigative Ophthalmology & Visual Science. 56: 3642-55. PMID 26047050 DOI: 10.1167/Iovs.14-15972 |
0.287 |
|
2014 |
Jeong M, Sun D, Luo M, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim SB, Yang L, Ko M, Chen R, Göttgens B, et al. Large conserved domains of low DNA methylation maintained by Dnmt3a. Nature Genetics. 46: 17-23. PMID 24270360 DOI: 10.1038/Ng.2836 |
0.286 |
|
2018 |
Roman D, Zhong H, Yaklichkin S, Chen R, Mardon G. Conditional loss of Kcnj13 in the retinal pigment epithelium causes photoreceptor degeneration. Experimental Eye Research. PMID 30009826 DOI: 10.1016/J.Exer.2018.07.014 |
0.285 |
|
2014 |
Li G, Zhang W, Baker MS, Laritsky E, Mattan-Hung N, Yu D, Kunde-Ramamoorthy G, Simerly RB, Chen R, Shen L, Waterland RA. Major epigenetic development distinguishing neuronal and non-neuronal cells occurs postnatally in the murine hypothalamus. Human Molecular Genetics. 23: 1579-90. PMID 24186871 DOI: 10.1093/Hmg/Ddt548 |
0.284 |
|
2019 |
Kean TJ, Ge Z, Li Y, Chen R, Dennis JE. Transcriptome-Wide Analysis of Human Chondrocyte Expansion on Synoviocyte Matrix. Cells. 8. PMID 30678371 DOI: 10.3390/Cells8020085 |
0.283 |
|
2019 |
Kim S, Lowe A, Dharmat R, Lee S, Owen LA, Wang J, Shakoor A, Li Y, Morgan DJ, Hejazi AA, Cvekl A, DeAngelis MM, Zhou ZJ, Chen R, Liu W. Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids. Proceedings of the National Academy of Sciences of the United States of America. PMID 31072937 DOI: 10.1073/Pnas.1901572116 |
0.283 |
|
2012 |
Wan M, Liang J, Xiong Y, Shi F, Zhang Y, Lu W, He Q, Yang D, Chen R, Liu D, Barton M, Songyang Z. The trithorax group protein Ash2l is essential for pluripotency and maintaining open chromatin in embryonic stem cells. The Journal of Biological Chemistry. 288: 5039-48. PMID 23239880 DOI: 10.1074/Jbc.M112.424515 |
0.282 |
|
2016 |
Hull S, Arno G, Ku CA, Ge Z, Waseem N, Chandra A, Webster AR, Robson AG, Michaelides M, Weleber RG, Davagnanam I, Chen R, Holder GE, Pennesi ME, Moore AT. Molecular and Clinical Findings in Patients With Knobloch Syndrome. Jama Ophthalmology. PMID 27259167 DOI: 10.1001/Jamaophthalmol.2016.1073 |
0.28 |
|
2016 |
Han X, Liu Z, Zhao L, Wang F, Yu Y, Yang J, Chen R, Qin L. Microfluidic Cell Deformability Assay for Rapid and Efficient Kinase Screening with the CRISPR-Cas9 System. Angewandte Chemie (International Ed. in English). PMID 27258939 DOI: 10.1002/Anie.201601984 |
0.28 |
|
2012 |
Wei Y, Chen R, Dimicoli S, Bueso-Ramos CE, Neuberg DS, Pierce SA, Yang H, Jia Y, Zheng H, Fang Z, Nguyen M, Fernandez M, Wang SA, Kantarjian HM, Garcia-Manero G. Deregulation of TLR2-JMJD3 Innate Immunity Signaling, Including a Rare TLR2 SNP As a Potential Somatic Mutation, in Myelodysplastic Syndromes (MDS) Blood. 120: 1700-1700. DOI: 10.1182/Blood.V120.21.1700.1700 |
0.279 |
|
2018 |
Yeung K, Wang F, Li Y, Wang K, Mardon G, Chen R. Integrative genomic analysis reveals novel regulatory mechanisms of eyeless during Drosophila eye development. Nucleic Acids Research. PMID 30295802 DOI: 10.1093/Nar/Gky892 |
0.279 |
|
2017 |
Dharmat R, Liu W, Ge Z, Sun Z, Yang L, Li Y, Wang K, Thomas K, Sui R, Chen R. IFT81 as a Candidate Gene for Nonsyndromic Retinal Degeneration. Investigative Ophthalmology & Visual Science. 58: 2483-2490. PMID 28460050 DOI: 10.1167/Iovs.16-19133 |
0.278 |
|
2016 |
Zhang K, Gao M, Chong Z, Li Y, Han X, Chen R, Qin L. Single-cell isolation by a modular single-cell pipette for RNA-sequencing. Lab On a Chip. PMID 27841430 DOI: 10.1039/C6Lc01241H |
0.277 |
|
2017 |
Landrock KK, Sullivan P, Martini-Stoica H, Goldstein DS, Graham BH, Yamamoto S, Bellen HJ, Gibbs RA, Chen R, D'Amelio M, Stoica G. Pleiotropic Neuropathological and Biochemical Alterations Associated with Myo5a Mutation in a Rat Model. Brain Research. PMID 29217155 DOI: 10.1016/J.Brainres.2017.11.029 |
0.277 |
|
2015 |
LeBlanc ME, Wang W, Caberoy NB, Chen X, Guo F, Alvarado G, Shen C, Wang F, Wang H, Chen R, Liu ZJ, Webster K, Li W. Hepatoma-derived growth factor-related protein-3 is a novel angiogenic factor. Plos One. 10: e0127904. PMID 25996149 DOI: 10.1371/Journal.Pone.0127904 |
0.277 |
|
2000 |
Jia H, Chen R, Cong B, Cao K, Sun C, Luo D. Characterization and transcriptional profiles of two rice MADS-box genes Plant Science. 155: 115-122. PMID 10814814 DOI: 10.1016/S0168-9452(00)00191-6 |
0.277 |
|
2006 |
Silasi D, Rutherford TJ, Schwartz PE, Chen R, Alvero A, Visintin I, Mor G. Novel method for predicting chemoresistance to paclitaxel in epithelial ovarian cancer patients Journal of Clinical Oncology. 24: 15007-15007. DOI: 10.1200/Jco.2006.24.18_Suppl.15007 |
0.277 |
|
2018 |
Wei C, Yang L, Cheng J, Imani S, Fu S, Lv H, Li Y, Chen R, Leung EL, Fu J. A novel homozygous variant of GPR98 causes usher syndrome type IIC in a consanguineous Chinese family by next generation sequencing. Bmc Medical Genetics. 19: 99. PMID 29890953 DOI: 10.1186/S12881-018-0602-0 |
0.275 |
|
2022 |
Yang H, Chen R, Wang Q, Wei Q, Ji Y, Zhong X, Li B. TVAR: Assessing Tissue-specific Functional Effects of Non-coding Variants with Deep Learning. Bioinformatics (Oxford, England). PMID 36063453 DOI: 10.1093/bioinformatics/btac608 |
0.275 |
|
2015 |
Wang F, Jiang L, Chen Y, Haelterman NA, Bellen HJ, Chen R. FlyVar: a database for genetic variation in Drosophila melanogaster. Database : the Journal of Biological Databases and Curation. 2015. PMID 26289428 DOI: 10.1093/database/bav079 |
0.275 |
|
2017 |
Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, et al. Abstract 2204: A proteomic landscape of diffuse-type gastric cancer Cancer Research. 77: 2204-2204. DOI: 10.1158/1538-7445.Am2017-2204 |
0.275 |
|
2011 |
Jiang Y, Scott KL, Kwak SJ, Chen R, Mardon G. Sds22/PP1 links epithelial integrity and tumor suppression via regulation of myosin II and JNK signaling. Oncogene. 30: 3248-60. PMID 21399659 DOI: 10.1038/Onc.2011.46 |
0.273 |
|
2015 |
Zhong H, Eblimit A, Moayedi Y, Boye SL, Chiodo VA, Chen Y, Li Y, Nichols RM, Hauswirth WW, Chen R, Mardon G. AAV8(Y733F)-mediated gene therapy in a Spata7 knockout mouse model of Leber congenital amaurosis and retinitis pigmentosa. Gene Therapy. PMID 25965394 DOI: 10.1038/Gt.2015.42 |
0.272 |
|
2009 |
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P, Ren Y, Zhu H, Li J, Lin K, Jin W, ... ... Chen R, et al. The genome of the cucumber, Cucumis sativus L. Nature Genetics. 41: 1275-81. PMID 19881527 DOI: 10.1038/Ng.475 |
0.272 |
|
2013 |
Huang Z, Chen K, Zhang J, Li Y, Wang H, Cui D, Tang J, Liu Y, Shi X, Li W, Liu D, Chen R, Sucgang RS, Pan X. A functional variomics tool for discovering drug-resistance genes and drug targets. Cell Reports. 3: 577-85. PMID 23416056 DOI: 10.1016/J.Celrep.2013.01.019 |
0.272 |
|
2012 |
Hou S, Yang Z, Du L, Jiang Z, Shu Q, Chen Y, Li F, Zhou Q, Ohno S, Chen R, Kijlstra A, Rosenbaum JT, Yang P. Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study. Arthritis and Rheumatism. 64: 4104-13. PMID 23001997 DOI: 10.1002/Art.37708 |
0.271 |
|
2011 |
Aagaard K, Harris A, Shope C, Chen R, Wang H, Daines B, Klinger S, Meloche S. 14: Whole transcriptome shotgun sequencing (RNA-SEQ) in a murine model of antenatal glucocorticoid-rescued pulmonary immaturity reveals essential roles for surfactant protein B (SPB) and corticotropin releasing hormone (CRH) American Journal of Obstetrics and Gynecology. 204: S8-S9. DOI: 10.1016/J.Ajog.2010.10.021 |
0.27 |
|
2011 |
Morrison MA, Silveira AC, Huynh N, Jun G, Smith SE, Zacharaki F, Sato H, Loomis S, Andreoli MT, Adams SM, Radeke MJ, Jelcick AS, Yuan Y, Tsiloulis AN, Chatzoulis DZ, ... ... Chen R, et al. Systems biology-based analysis implicates a novel role for vitamin D metabolism in the pathogenesis of age-related macular degeneration. Human Genomics. 5: 538-68. PMID 22155603 DOI: 10.1186/1479-7364-5-6-538 |
0.268 |
|
2014 |
Wang S, Mohammed N, Chen R. Differentially private genome data dissemination through top-down specialization. Bmc Medical Informatics and Decision Making. S2. PMID 25521306 DOI: 10.1186/1472-6947-14-S1-S2 |
0.268 |
|
2014 |
Zhou Q, Zhang T, Jemc JC, Chen Y, Chen R, Rebay I, Pignoni F. Onset of atonal expression in Drosophila retinal progenitors involves redundant and synergistic contributions of Ey/Pax6 and So binding sites within two distant enhancers. Developmental Biology. 386: 152-64. PMID 24247006 DOI: 10.1016/J.Ydbio.2013.11.012 |
0.268 |
|
2003 |
Pappu KS, Chen R, Middlebrooks BW, Woo C, Heberlein U, Mardon G. Mechanism of hedgehog signaling during Drosophila eye development. Development (Cambridge, England). 130: 3053-62. PMID 12756186 DOI: 10.1242/Dev.00534 |
0.267 |
|
2021 |
Zou G, Zhang T, Cheng X, Igelman AD, Wang J, Qian X, Fu S, Wang K, Koenekoop RK, Fishman GA, Yang P, Li Y, Pennesi ME, Chen R. Noncoding mutation in contributes to inherited retinal degenerations. Molecular Vision. 27: 95-106. PMID 33907365 |
0.266 |
|
1997 |
Chen R, Amoui M, Zhang Z, Mardon G. Dachshund and eyes absent proteins form a complex and function synergistically to induce ectopic eye development in Drosophila. Cell. 91: 893-903. PMID 9428513 DOI: 10.1016/S0092-8674(00)80481-X |
0.266 |
|
2013 |
Wei Y, Dimicoli S, Bueso-Ramos C, Chen R, Yang H, Neuberg D, Pierce S, Jia Y, Zheng H, Wang H, Wang X, Nguyen M, Wang SA, Ebert B, Bejar R, et al. Toll-like receptor alterations in myelodysplastic syndrome. Leukemia. 27: 1832-40. PMID 23765228 DOI: 10.1038/Leu.2013.180 |
0.265 |
|
2015 |
Mei J, Ni M, Wang G, Jia G, Liu S, Cui X, Jiang C, Wang H, Dai Y, Quan K, Chen R. Association between injury to the retinacula of Weitbrecht and femoral neck fractures: anatomical and clinical observations. International Journal of Clinical and Experimental Medicine. 8: 17674-83. PMID 26770357 |
0.265 |
|
2006 |
Kelly MG, Alvero AB, Chen R, Silasi DA, Abrahams VM, Chan S, Visintin I, Rutherford T, Mor G. TLR-4 signaling promotes tumor growth and paclitaxel chemoresistance in ovarian cancer. Cancer Research. 66: 3859-68. PMID 16585214 DOI: 10.1158/0008-5472.Can-05-3948 |
0.265 |
|
2005 |
Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, Platzer M, Howell GR, Burrows C, Bird CP, Frankish A, Lovell FL, Howe KL, Ashurst JL, Fulton RS, ... ... Chen R, et al. The DNA sequence of the human X chromosome. Nature. 434: 325-37. PMID 15772651 DOI: 10.1038/Nature03440 |
0.265 |
|
2015 |
Kimura W, Xiao F, Canseco DC, Muralidhar S, Thet S, Zhang HM, Abdulrahman Y, Chen R, Garcia JA, Shelton JM, Richardson JA, Ashour AM, Asaithamby A, Liang H, Xing C, et al. Hypoxia fate mapping identifies cycling cardiomyocytes in the adult heart. Nature. PMID 26098368 DOI: 10.1038/Nature14582 |
0.264 |
|
2015 |
Ding Y, Caberoy NB, Guo F, LeBlanc ME, Zhang C, Wang W, Wang F, Chen R, Li W. Reticulocalbin-1 facilitates microglial phagocytosis. Plos One. 10: e0126993. PMID 25992960 DOI: 10.1371/Journal.Pone.0126993 |
0.263 |
|
2019 |
Shurygina MF, Parker MA, Schlechter CL, Chen R, Li Y, Weleber RG, Yang P, Pennesi ME. A case report of two siblings with Alstrom syndrome without hearing loss associated with two new ALMS1 variants. Bmc Ophthalmology. 19: 246. PMID 31810438 DOI: 10.1186/S12886-019-1259-Y |
0.263 |
|
2018 |
Emerson CH, Lopez CR, Ribes-Zamora A, Polleys EJ, Williams CL, Yeo L, Zaneveld JE, Chen R, Bertuch AA. Ku DNA End-Binding Activity Promotes Repair Fidelity and Influences End-Processing During Nonhomologous End-Joining in. Genetics. PMID 29500182 DOI: 10.1534/Genetics.117.300672 |
0.263 |
|
2011 |
Chen R, Dioum EM, Hogg RT, Gerard RD, Garcia JA. Hypoxia increases sirtuin 1 expression in a hypoxia-inducible factor-dependent manner Journal of Biological Chemistry. 286: 13869-13878. PMID 21345792 DOI: 10.1074/Jbc.M110.175414 |
0.262 |
|
2010 |
Wang H, den Hollander AI, Moayedi Y, Abulimiti A, Li Y, Collin RWJ, Hoyng CB, Lopez I, Abboud EB, Al-Rajhi AA, Bray M, Lewis RA, Lupski JR, Mardon G, Koenekoop RK, ... Chen R, et al. Mutations in SPATA7 Cause Leber Congenital Amaurosis and Juvenile Retinitis Pigmentosa (DOI:10.1016/j.ajhg.2009.02.005) American Journal of Human Genetics. 86: 293. DOI: 10.1016/J.Ajhg.2010.01.002 |
0.262 |
|
2011 |
Xi Y, Yao J, Chen R, Li W, He X. Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation Genome Research. 21: 718-724. PMID 21363969 DOI: 10.1101/Gr.117101.110 |
0.26 |
|
2020 |
Bajaj L, Sharma J, di Ronza A, Zhang P, Eblimit A, Pal R, Roman D, Collette JR, Booth C, Chang KT, Sifers RN, Jung SY, Weimer JM, Chen R, Schekman RW, et al. A CLN6-CLN8 complex recruits lysosomal enzymes at the ER for Golgi transfer. The Journal of Clinical Investigation. PMID 32597833 DOI: 10.1172/Jci130955 |
0.26 |
|
2014 |
Tao J, Jiang MM, Jiang L, Salvo JS, Zeng HC, Dawson B, Bertin TK, Rao PH, Chen R, Donehower LA, Gannon F, Lee BH. Notch activation as a driver of osteogenic sarcoma. Cancer Cell. 26: 390-401. PMID 25203324 DOI: 10.1016/J.Ccr.2014.07.023 |
0.259 |
|
2013 |
Jabbour E, Takahashi K, Wang X, Cornelison AM, Abruzzo L, Kadia T, Borthakur G, Estrov Z, O'Brien S, Mallo M, Wierda W, Pierce S, Wei Y, Sole F, Chen R, et al. Acquisition of cytogenetic abnormalities in patients with IPSS defined lower-risk myelodysplastic syndrome is associated with poor prognosis and transformation to acute myelogenous leukemia American Journal of Hematology. 88: 831-837. PMID 23760779 DOI: 10.1002/Ajh.23513 |
0.259 |
|
2018 |
Yu B, Egbejimi A, Dharmat R, Xu P, Zhao Z, Long B, Miao H, Chen R, Wensel TG, Cai J, Chen Y. Phagocytosed photoreceptor outer segments activate mTORC1 in the retinal pigment epithelium. Science Signaling. 11. PMID 29844054 DOI: 10.1126/Scisignal.Aag3315 |
0.257 |
|
2009 |
Alvero AB, Chen R, Fu HH, Montagna M, Schwartz PE, Rutherford T, Silasi DA, Steffensen KD, Waldstrom M, Visintin I, Mor G. Molecular phenotyping of human ovarian cancer stem cells unravels the mechanisms for repair and chemoresistance. Cell Cycle (Georgetown, Tex.). 8: 158-66. PMID 19158483 DOI: 10.4161/Cc.8.1.7533 |
0.257 |
|
2018 |
Machol K, Jankovic J, Vijayakumar D, Burrage LC, Jain M, Lewis RA, Fuller GN, Xu M, Penas-Prado M, Gule-Monroe MK, Rosenfeld JA, Chen R, Eng CM, Yang Y, Lee BH, et al. Atypical Alexander disease with dystonia, retinopathy, and a brain mass mimicking astrocytoma. Neurology. Genetics. 4: e248. PMID 30046660 DOI: 10.1212/Nxg.0000000000000248 |
0.257 |
|
2019 |
Alabduljalil T, Patel RC, Alqahtani AA, Gao SS, Gale MJ, Zhang M, Jia Y, Huang D, Chiang PW, Chen R, Wang J, Weleber RG, Pennesi ME, Yang P. Correlation of Outer Retinal Degeneration and Choriocapillaris Loss in Stargardt disease using en face OCT and OCT Angiography. American Journal of Ophthalmology. PMID 30771335 DOI: 10.1016/J.Ajo.2019.02.007 |
0.256 |
|
2012 |
Kriel A, Bittner AN, Kim SH, Liu K, Tehranchi AK, Zou WY, Rendon S, Chen R, Tu BP, Wang JD. Direct regulation of GTP homeostasis by (p)ppGpp: a critical component of viability and stress resistance. Molecular Cell. 48: 231-41. PMID 22981860 DOI: 10.1016/J.Molcel.2012.08.009 |
0.256 |
|
2022 |
Ji Y, Wei Q, Chen R, Wang Q, Tao R, Li B. Integration of multidimensional splicing data and GWAS summary statistics for risk gene discovery. Plos Genetics. 18: e1009814. PMID 35771864 DOI: 10.1371/journal.pgen.1009814 |
0.256 |
|
2016 |
Kølvraa S, Singh R, Normand EA, Qdaisat S, Van denVeyver IB, Jackson L, Hatt L, Schelde P, Uldbjerg N, Vestergaard EM, Zhao L, Chen R, Shaw CA, Breman AM, Beaudet AL. Genome-wide copy number analysis on DNA from fetal cells isolated from the blood of pregnant women. Prenatal Diagnosis. PMID 27761919 DOI: 10.1002/Pd.4948 |
0.256 |
|
2007 |
Silasi DA, Alvero AB, Mor J, Chen R, Fu HH, Montagna MK, Mor G. Detection of cancer-related proteins in fresh-frozen ovarian cancer samples using laser capture microdissection Methods in Molecular Biology. 414: 35-45. PMID 18175810 DOI: 10.1007/978-1-59745-339-4_4 |
0.255 |
|
2008 |
Chen R, Alvero AB, Silasi DA, Kelly MG, Fest S, Visintin I, Leiser A, Schwartz PE, Rutherford T, Mor G. Regulation of IKKβ by miR-199a affects NF-κB activity in ovarian cancer cells Oncogene. 27: 4712-4723. PMID 18408758 DOI: 10.1038/Onc.2008.112 |
0.255 |
|
2011 |
Chen R, Liliental JE, Kowalski PE, Lu Q, Cohen SN. Regulation of transcription of hypoxia-inducible factor-1α (HIF-1α) by heat shock factors HSF2 and HSF4 Oncogene. 30: 2570-2580. PMID 21258402 DOI: 10.1038/Onc.2010.623 |
0.253 |
|
2015 |
Mei J, Ni M, Wang G, Jia G, Liu S, Cui X, Jiang C, Wang H, Dai Y, Quan K, Chen R. Number and distribution of nutrient foramina within the femoral neck and their relationship to the retinacula of Weitbrecht: an anatomical study. Anatomical Science International. PMID 26690362 DOI: 10.1007/s12565-015-0319-5 |
0.252 |
|
2012 |
Fu J, Zhang L, He T, Xiao X, Liu X, Wang L, Yang L, Yang M, Zhang T, Chen R, Xu J. TWIST represses estrogen receptor-alpha expression by recruiting the NuRD protein complex in breast cancer cells. International Journal of Biological Sciences. 8: 522-532. PMID 22457607 DOI: 10.7150/Ijbs.4164 |
0.248 |
|
2012 |
Chen R, Xu M, Hogg RT, Li J, Little B, Gerard RD, Garcia JA. The acetylase/deacetylase couple CREB-binding protein/Sirtuin 1 controls hypoxia-inducible factor 2 signaling. The Journal of Biological Chemistry. 287: 30800-11. PMID 22807441 DOI: 10.1074/Jbc.M111.244780 |
0.246 |
|
2012 |
Kocabas F, Mahmoud AI, Sosic D, Porrello ER, Chen R, Garcia JA, DeBerardinis RJ, Sadek HA. The hypoxic epicardial and subepicardial microenvironment. Journal of Cardiovascular Translational Research. 5: 654-65. PMID 22566269 DOI: 10.1007/S12265-012-9366-7 |
0.246 |
|
2011 |
Harris A, Shope C, Chen R, Wang H, Daines B, Klinger S, Meloche S, Aagaard K. RNA Sequencing of Lung in an Antenatal Glucocorticoid-Rescued Pulmonary Immaturity Murine Model Reveals Roles for Surfactant Protein B (SPB) and Corticotropin Releasing Hormone (CRH). Biology of Reproduction. 85: 406-406. DOI: 10.1093/Biolreprod/85.S1.406 |
0.245 |
|
2020 |
Luo W, Wang Y, Zhang L, Ren P, Zhang C, Li Y, Azares AR, Zhang M, Guo J, Ghaghada KB, Starosolski ZA, Rajapakshe K, Coarfa C, Li Y, Chen R, et al. Critical Role of Cytosolic DNA and Its Sensing Adaptor STING in Aortic Degeneration, Dissection, and Rupture. Circulation. 141: 42-66. PMID 31887080 DOI: 10.1161/Circulationaha.119.041460 |
0.244 |
|
2017 |
LeBlanc ME, Wang W, Chen X, Caberoy NB, Guo F, Shen C, Ji Y, Tian H, Wang H, Chen R, Li W. Secretogranin III as a disease-associated ligand for antiangiogenic therapy of diabetic retinopathy. The Journal of Experimental Medicine. PMID 28330905 DOI: 10.1084/Jem.20161802 |
0.244 |
|
2016 |
Zhang F, Xu T, Mao L, Yan S, Chen X, Wu Z, Chen R, Luo X, Xie J, Gao S. Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication. Bmc Plant Biology. 16: 103. PMID 27118394 DOI: 10.1186/S12870-016-0788-2 |
0.242 |
|
2021 |
Qian X, Wang J, Wang M, Igelman AD, Jones KD, Li Y, Wang K, Goetz KE, Birch DG, Yang P, Pennesi ME, Chen R. Identification of Deep-Intronic Splice Mutations in a Large Cohort of Patients With Inherited Retinal Diseases. Frontiers in Genetics. 12: 647400. PMID 33737949 DOI: 10.3389/fgene.2021.647400 |
0.241 |
|
2014 |
Xu M, Nagati JS, Xie J, Li J, Walters H, Moon YA, Gerard RD, Huang CL, Comerford SA, Hammer RE, Horton JD, Chen R, Garcia JA. An acetate switch regulates stress erythropoiesis. Nature Medicine. 20: 1018-26. PMID 25108527 DOI: 10.1038/Nm.3587 |
0.241 |
|
2022 |
Wang Q, Zhang L, Zhang Y, Chen H, Song J, Lyu M, Chen R, Zhang L. Comparative genomic analyses reveal genetic characteristics and pathogenic factors of HM-7. Frontiers in Microbiology. 13: 1008648. PMID 36419435 DOI: 10.3389/fmicb.2022.1008648 |
0.24 |
|
2017 |
Chen R, Xu M, Nagati J, Garcia JA. Coordinate regulation of stress signaling and epigenetic events by Acss2 and HIF-2 in cancer cells. Plos One. 12: e0190241. PMID 29281714 DOI: 10.1371/Journal.Pone.0190241 |
0.24 |
|
2013 |
Mazur E, Vasquez Y, Kovanci E, Jiang L, Chen R, DeMayo F. Activator protein 1 (AP-1) members FOSL2 and JUN are direct targets of progesterone receptor and critical for human endometrial stroma cell decidualization Fertility and Sterility. 100: S125-S126. DOI: 10.1016/J.Fertnstert.2013.07.1622 |
0.238 |
|
2014 |
Puente BN, Kimura W, Muralidhar SA, Moon J, Amatruda JF, Phelps KL, Grinsfelder D, Rothermel BA, Chen R, Garcia JA, Santos CX, Thet S, Mori E, Kinter MT, Rindler PM, et al. The oxygen-rich postnatal environment induces cardiomyocyte cell-cycle arrest through DNA damage response. Cell. 157: 565-79. PMID 24766806 DOI: 10.1016/J.Cell.2014.03.032 |
0.237 |
|
2007 |
Fest S, Aldo PB, Abrahams VM, Visintin I, Alvero A, Chen R, Chavez SL, Romero R, Mor G. Trophoblast-macrophage interactions: a regulatory network for the protection of pregnancy. American Journal of Reproductive Immunology (New York, N.Y. : 1989). 57: 55-66. PMID 17156192 DOI: 10.1111/J.1600-0897.2006.00446.X |
0.237 |
|
2009 |
Dioum EM, Chen R, Alexander MS, Zhang Q, Hogg RT, Gerard RD, Garcia JA. Regulation of Hypoxia-Inducible Factor 2α Signaling by the Stress-Responsive Deacetylase Sirtuin 1 Science. 324: 1289-1293. PMID 19498162 DOI: 10.1126/Science.1169956 |
0.237 |
|
2020 |
Unlu G, Qi X, Gamazon ER, Melville DB, Patel N, Rushing AR, Hashem M, Al-Faifi A, Chen R, Li B, Cox NJ, Alkuraya FS, Knapik EW. Phenome-based approach identifies RIC1-linked Mendelian syndrome through zebrafish models, biobank associations and clinical studies. Nature Medicine. 26: 98-109. PMID 31932796 DOI: 10.1038/S41591-019-0705-Y |
0.236 |
|
2023 |
Hussain HMJ, Wang M, Huang A, Schmidt R, Qian X, Yang P, Marra M, Li Y, Pennesi ME, Chen R. Novel Pathogenic Mutations Identified from Whole-Genome Sequencing in Unsolved Cases of Patients Affected with Inherited Retinal Diseases. Genes. 14. PMID 36833373 DOI: 10.3390/genes14020447 |
0.235 |
|
2018 |
Eblimit A, Agrawal SA, Thomas K, Anastassov IA, Abulikemu T, Moayedi Y, Mardon G, Chen R. Corrigendum to "Conditional loss of Spata7 in photoreceptors causes progressive retinal degeneration in mice" [Exp. Eye Res. 166 (2018) 120-130]. Experimental Eye Research. 171: 119. PMID 29579643 DOI: 10.1016/J.Exer.2018.03.011 |
0.234 |
|
2023 |
Dou J, Tan Y, Kock KH, Wang J, Cheng X, Tan LM, Han KY, Hon CC, Park WY, Shin JW, Jin H, Wang Y, Chen H, Ding L, Prabhakar S, ... ... Chen R, et al. Single-nucleotide variant calling in single-cell sequencing data with Monopogen. Nature Biotechnology. PMID 37592035 DOI: 10.1038/s41587-023-01873-x |
0.234 |
|
2009 |
Alvero AB, Montagna MK, Chen R, Kim KH, Kyungjin K, Visintin I, Fu HH, Brown D, Mor G. NV-128, a novel isoflavone derivative, induces caspase-independent cell death through the Akt/mammalian target of rapamycin pathway. Cancer. 115: 3204-16. PMID 19472400 DOI: 10.1002/Cncr.24397 |
0.234 |
|
2015 |
Yu DH, Gadkari M, Zhou Q, Yu S, Gao N, Guan Y, Schady D, Roshan TN, Chen MH, Laritsky E, Ge Z, Wang H, Chen R, Westwater C, Bry L, et al. Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome. Genome Biology. 16: 211. PMID 26420038 DOI: 10.1186/S13059-015-0763-5 |
0.233 |
|
2007 |
Chen R, Alvero AB, Silasi DA, Mor G. Inflammation, cancer and chemoresistance: Taking advantage of the toll-like receptor signaling pathway American Journal of Reproductive Immunology. 57: 93-107. PMID 17217363 DOI: 10.1111/J.1600-0897.2006.00441.X |
0.232 |
|
2015 |
Wang C, Duan S, Lv G, Lai X, Chen R, Lin H, Qiu S, Tang J, Kuang W, Xu C. Using whole exome sequencing and bioformatics in the molecular autopsy of a sudden unexplained death syndrome (SUDS) case. Forensic Science International. PMID 26385840 DOI: 10.1016/j.forsciint.2015.08.022 |
0.231 |
|
2016 |
Tan H, Deng B, Yu H, Yang Y, Ding L, Zhang Q, Qin J, Kijlstra A, Chen R, Yang P. Genetic analysis of innate immunity in Behcet's disease identifies an association with IL-37 and IL-18RAP. Scientific Reports. 6: 35802. PMID 27775096 DOI: 10.1038/Srep35802 |
0.23 |
|
2024 |
Hamel AR, Yan W, Rouhana JM, Monovarfeshani A, Jiang X, Mehta PA, Advani J, Luo Y, Liang Q, Rajasundaram S, Shrivastava A, Duchinski K, Mantena S, Wang J, van Zyl T, ... ... Chen R, et al. Integrating genetic regulation and single-cell expression with GWAS prioritizes causal genes and cell types for glaucoma. Nature Communications. 15: 396. PMID 38195602 DOI: 10.1038/s41467-023-44380-y |
0.23 |
|
2011 |
Wang H, Chen X, Dudinsky L, Patenia C, Chen Y, Li Y, Wei Y, Abboud EB, Al-Rajhi AA, Lewis RA, Lupski JR, Mardon G, Gibbs RA, Perkins BD, Chen R. Exome capture sequencing identifies a novel mutation in BBS4. Molecular Vision. 17: 3529-40. PMID 22219648 |
0.229 |
|
2022 |
Chen CY, Tan H, Chen R, Zhang FP. Characterization of the complete chloroplast genome of Par. et Rchb. f. 1874 (Orchidaceae). Mitochondrial Dna. Part B, Resources. 7: 644-645. PMID 35425859 DOI: 10.1080/23802359.2022.2062264 |
0.229 |
|
2015 |
Chen R, Xu M, Nagati JS, Hogg RT, Das A, Gerard RD, Garcia JA. The acetate/ACSS2 switch regulates HIF-2 stress signaling in the tumor cell microenvironment. Plos One. 10: e0116515. PMID 25689462 DOI: 10.1371/Journal.Pone.0116515 |
0.228 |
|
2023 |
Wang J, Cheng X, Liang Q, Owen LA, Lu J, Zheng Y, Wang M, Chen S, DeAngelis MM, Li Y, Chen R. Single-cell multiomics of the human retina reveals hierarchical transcription factor collaboration in mediating cell type-specific effects of genetic variants on gene regulation. Genome Biology. 24: 269. PMID 38012720 DOI: 10.1186/s13059-023-03111-8 |
0.226 |
|
2022 |
Wu W, Ma S, Chen R, Huang Y, Deng Y. Genome-wide analysis of Keratinibaculum paraultunense strain KD-1 and its key genes and metabolic pathways involved in the anaerobic degradation of feather keratin. Archives of Microbiology. 204: 634. PMID 36127480 DOI: 10.1007/s00203-022-03226-9 |
0.226 |
|
2023 |
Song Z, Li S, Shang Z, Lv W, Cheng X, Meng X, Chen R, Zhang S, Zhang R. Integrating multi-omics data to analyze the potential pathogenic mechanism of CTSH gene involved in type 1 diabetes in the exocrine pancreas. Briefings in Functional Genomics. PMID 38050341 DOI: 10.1093/bfgp/elad052 |
0.226 |
|
2013 |
Wang S, Chen R, Kiyama T. Hes1 promotes additional cell cycles when used to replace Math5 Journal of Vision. 13. DOI: 10.1167/13.15.36 |
0.224 |
|
2019 |
Zhou Y, Yang L, Zhang X, Chen R, Chen X, Tang W, Zhang M. Identification of Potential Biomarkers in Glioblastoma through Bioinformatic Analysis and Evaluating Their Prognostic Value. Biomed Research International. 2019: 6581576. PMID 31119182 DOI: 10.1155/2019/6581576 |
0.224 |
|
2016 |
Zhang B, Kwon OJ, Henry G, Malewska A, Wei X, Zhang L, Brinkley W, Zhang Y, Castro PD, Titus M, Chen R, Sayeeduddin M, Raj GV, Mauck R, Roehrborn C, et al. Non-Cell-Autonomous Regulation of Prostate Epithelial Homeostasis by Androgen Receptor. Molecular Cell. PMID 27594448 DOI: 10.1016/J.Molcel.2016.07.025 |
0.223 |
|
2023 |
Liu D, Liu LL, Zheng XQ, Chen R, Lin LR, Yang TC, Tong ML. Genetic Profiling of the Full-Length Gene in Patients with Primary and Secondary Syphilis. Microbiology Spectrum. e0493122. PMID 37036342 DOI: 10.1128/spectrum.04931-22 |
0.223 |
|
2015 |
Pew B, Harris R, Sbrana E, Guaman MC, Klinger S, Shope C, Wang H, Chen R, Meloche S, Aagaard K. 293: Transcriptomic analysis reveals potential roles for ERK3 in fetal lung maturation via surfactant protein B and corticotropin releasing hormone American Journal of Obstetrics and Gynecology. 212: S157-S158. DOI: 10.1016/J.Ajog.2014.10.339 |
0.223 |
|
2022 |
Matynia A, Wang J, Kim S, Li Y, Dimashkie A, Jiang Z, Hu J, Strom SP, Radu RA, Chen R, Gorin MB. Assessing Variant Causality and Severity Using Retinal Pigment Epithelial Cells Derived from Stargardt Disease Patients. Translational Vision Science & Technology. 11: 33. PMID 35348597 DOI: 10.1167/tvst.11.3.33 |
0.223 |
|
2023 |
Long Y, Xu W, Liu C, Dong M, Liu W, Pei X, Li L, Chen R, Jin W. Genetically modified soybean lines exhibit less transcriptomic variation compared to natural varieties. Gm Crops & Food. 14: 1-11. PMID 37454359 DOI: 10.1080/21645698.2023.2233122 |
0.222 |
|
2014 |
Puente BN, Kimura W, Muralidhar SA, Moon J, Amatruda JF, Phelps KL, Grinsfelder D, Rothermel BA, Chen R, Garcia JA, Santos CX, Thet S, Mori E, Kinter MT, Rindler PM, et al. Erratum: The oxygen-rich postnatal environment induces cardiomyocyte cell-cycle arrest through DNA damage response (Cell (2014) 157 (741-743)) Cell. 157. DOI: 10.1016/J.Cell.2014.05.008 |
0.221 |
|
2008 |
Mor G, Chen R, Fu HH, Montagna M, Visintin I, Silasi D, Schwartz P, Azodi M, Rutherford T, Alvero A. Abstract 2029: Identification and characterization of cancer stem cells in ovarian cancer Tumor Biology. DOI: 10.1158/1538-7445.Am2008-2029 |
0.221 |
|
2022 |
Chen R, Yang Z, Liu J, Cai X, Huo Y, Zhang Z, Li M, Chang H, Luo XJ. Functional genomic analysis delineates regulatory mechanisms of GWAS-identified bipolar disorder risk variants. Genome Medicine. 14: 53. PMID 35590387 DOI: 10.1186/s13073-022-01057-3 |
0.22 |
|
2021 |
Xiao J, Wei X, Zhou Y, Xin Z, Miao Y, Hou H, Li J, Zhao D, Liu J, Chen R, Niu L, Ma G, Zhen W, He S, Wang J, et al. Genomes of 12 fig wasps provide insights into the adaptation of pollinators to fig syconia. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34011484 DOI: 10.1016/j.jgg.2021.02.010 |
0.22 |
|
2016 |
Pew BK, Harris RA, Sbrana E, Cuevas Guaman M, Shope C, Chen R, Meloche S, Aagaard K. Structural and Transcriptomic Response to Antenatal Corticosteroids in an Erk3-null Mouse Model of Respiratory Distress. American Journal of Obstetrics and Gynecology. PMID 27143398 DOI: 10.1016/J.Ajog.2016.04.043 |
0.22 |
|
2010 |
Yin G, Chen R, Alvero AB, Fu H, Holmberg J, Glackin C, Rutherford T, Mor G. TWISTing stemness, inflammation and proliferation of epithelial ovarian cancer cells through MIR199A2/214 Oncogene. 29: 3545-3553. PMID 20400975 DOI: 10.1038/Onc.2010.111 |
0.22 |
|
2009 |
Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H. Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach. Bmc Genomics. 10: 512. PMID 19891781 DOI: 10.1186/1471-2164-10-512 |
0.219 |
|
2020 |
Zou P, Duan L, Zhang S, Bai X, Liu Z, Jin F, Sun H, Xu W, Chen R. Target Specificity of the CRISPR-Cas9 System in , , and Genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32298599 DOI: 10.1089/cmb.2019.0453 |
0.219 |
|
2024 |
Brock DC, Wang M, Hussain HMJ, Rauch DE, Marra M, Pennesi ME, Yang P, Everett L, Ajlan RS, Colbert J, Porto FBO, Matynia A, Gorin MB, Koenekoop RK, Lopez I, ... ... Chen R, et al. Comparative analysis of in-silico tools in identifying pathogenic variants in dominant inherited retinal diseases. Human Molecular Genetics. PMID 38453143 DOI: 10.1093/hmg/ddae028 |
0.218 |
|
2022 |
Zernant J, Lee W, Wang J, Goetz K, Ullah E, Nagasaki T, Su PY, Fishman GA, Tsang SH, Tumminia SJ, Brooks BP, Hufnagel RB, Chen R, Allikmets R. Rare and common variants in ROM1 and PRPH2 genes trans-modify Stargardt/ABCA4 disease. Plos Genetics. 18: e1010129. PMID 35353811 DOI: 10.1371/journal.pgen.1010129 |
0.218 |
|
2017 |
Zeng HC, Bae Y, Dawson BC, Chen Y, Bertin T, Munivez E, Campeau PM, Tao J, Chen R, Lee BH. MicroRNA miR-23a cluster promotes osteocyte differentiation by regulating TGF-β signalling in osteoblasts. Nature Communications. 8: 15000. PMID 28397831 DOI: 10.1038/Ncomms15000 |
0.218 |
|
2011 |
Wang C, Liu F, Liu YY, Zhao CH, You Y, Wang L, Zhang J, Wei B, Ma T, Zhang Q, Zhang Y, Chen R, Song H, Yang Z. Identification and characterization of neuroblasts in the subventricular zone and rostral migratory stream of the adult human brain. Cell Research. 21: 1534-50. PMID 21577236 DOI: 10.1038/Cr.2011.83 |
0.217 |
|
2017 |
Breton CV, Marsit CJ, Faustman E, Nadeau K, Goodrich JM, Dolinoy DC, Herbstman J, Holland N, LaSalle JM, Schmidt R, Yousefi P, Perera F, Joubert BR, Wiemels J, Taylor M, ... ... Chen R, et al. Small-Magnitude Effect Sizes in Epigenetic End Points are Important in Children's Environmental Health Studies: The Children's Environmental Health and Disease Prevention Research Center's Epigenetics Working Group. Environmental Health Perspectives. 125: 511-526. PMID 28362264 DOI: 10.1289/Ehp595 |
0.217 |
|
2022 |
Zhang Y, Zhang D, Xu Y, Qin Y, Gu M, Cai W, Bai Z, Zhang X, Chen R, Sun Y, Wu Y, Wang Z. Selection of Cashmere Fineness Functional Genes by Translatomics. Frontiers in Genetics. 12: 775499. PMID 35096002 DOI: 10.3389/fgene.2021.775499 |
0.216 |
|
2018 |
Yang H, Chen R, Wang Q, Wei Q, Ji Y, Zheng G, Zhong X, Cox NJ, Li B. De Novo pattern discovery enables robust assessment of functional consequences of noncoding variants. Bioinformatics (Oxford, England). PMID 30256891 DOI: 10.1093/Bioinformatics/Bty826 |
0.216 |
|
2021 |
Bertrand RE, Wang J, Li Y, Cheng X, Wang K, Stoilov P, Chen R. Cwc27, associated with retinal degeneration, functions as a splicing factor in vivo. Human Molecular Genetics. PMID 34726245 DOI: 10.1093/hmg/ddab319 |
0.215 |
|
2020 |
Li J, Xu C, Lee HJ, Ren S, Zi X, Zhang Z, Wang H, Yu Y, Yang C, Gao X, Hou J, Wang L, Yang B, Yang Q, Ye H, ... ... Chen R, et al. A genomic and epigenomic atlas of prostate cancer in Asian populations. Nature. 580: 93-99. PMID 32238934 DOI: 10.1038/S41586-020-2135-X |
0.214 |
|
2023 |
Fu S, Fu J, Mobasher-Jannat A, Jadidi K, Li Y, Chen R, Imani S, Cheng J. Novel pathogenic variant in Iranian familial with inherited retinal dystrophies: genotype-phenotype correlation. 3 Biotech. 13: 166. PMID 37162806 DOI: 10.1007/s13205-023-03535-w |
0.209 |
|
2019 |
Wang J, Chen R, Collins JJ. Systematically improved in vitro culture conditions reveal new insights into the reproductive biology of the human parasite Schistosoma mansoni. Plos Biology. 17: e3000254. PMID 31067225 DOI: 10.1371/Journal.Pbio.3000254 |
0.209 |
|
2023 |
Zhang J, Si Z, Chen R, Liu W, Shi Y, Shi Z, Mei H, Hu Y, Fang L, Zhang T. A new model system for cotton indoor genetic and genomic research. Science China. Life Sciences. PMID 36738433 DOI: 10.1007/s11427-022-2259-x |
0.209 |
|
2018 |
Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, et al. Author Correction: A proteomic landscape of diffuse-type gastric cancer. Nature Communications. 9: 1850. PMID 29739932 DOI: 10.1038/S41467-018-04166-Z |
0.207 |
|
2019 |
Zhang X, Sun B, Tang Q, Chen R, Han S. Molecular Identification and Phylogenetic Analysis of Nuclear rDNA Sequences of Isolates From Human Fecal Samples in Heilongjiang Province, China. Frontiers in Microbiology. 10: 26. PMID 30745896 DOI: 10.3389/fmicb.2019.00026 |
0.207 |
|
2018 |
Liu C, Chen S, Meng F, Chen R, Zhang Z, Du E, Xue Q. Full-Length Genome Sequences of Two Chinese Porcine Circovirus Type 3 Strains, NWHEB21 and NWHUN2. Genome Announcements. 6. PMID 29449393 DOI: 10.1128/genomeA.00062-18 |
0.207 |
|
2023 |
Guo D, Zhang S, Gao Y, Shi J, Wang X, Zhang Z, Zhang Y, Wang Y, Zhao K, Li M, Wang A, Wang P, Gou Y, Zhang M, Liu M, ... ... Chen R, et al. Exploring the cellular and molecular differences between ovarian clear cell carcinoma and high-grade serous carcinoma using single-cell RNA sequencing and GEO gene expression signatures. Cell & Bioscience. 13: 139. PMID 37525249 DOI: 10.1186/s13578-023-01087-3 |
0.207 |
|
2020 |
Yang L, Han N, Zhang X, Zhou Y, Chen R, Zhang M. ZWINT: A potential therapeutic biomarker in patients with glioblastoma correlates with cell proliferation and invasion. Oncology Reports. PMID 32323832 DOI: 10.3892/or.2020.7573 |
0.207 |
|
2017 |
Zhong W, Li B, Li XY, Wang ZQ, Shao C, Wang CP, Chen R, Yan JC. Amelioration of Inflammatory Cytokines Mix Stimulation: A Pretreatment of CD137 Signaling Study on VSMC. Mediators of Inflammation. 2017: 1382805. PMID 28280290 DOI: 10.1155/2017/1382805 |
0.205 |
|
2023 |
Huang J, Zhang G, Li Y, Lyu M, Zhang H, Zhang N, Chen R. Integrative genomic and transcriptomic analyses of a bud sport mutant 'Jinzao Wuhe' with the phenotype of large berries in grapevines. Peerj. 11: e14617. PMID 36620751 DOI: 10.7717/peerj.14617 |
0.204 |
|
2017 |
Jones KD, Wheaton DK, Bowne SJ, Sullivan LS, Birch DG, Chen R, Daiger SP. Next-generation sequencing to solve complex inherited retinal dystrophy: A case series of multiple genes contributing to disease in extended families. Molecular Vision. 23: 470-481. PMID 28761320 |
0.204 |
|
2015 |
Kong Q, Tong Q, Lou D, Ding J, Zheng B, Chen R, Zhu X, Chen X, Dong K, Lu S. Quantitative proteomic analyses of Schistosoma japonicum in response to artesunate. Molecular Biosystems. 11: 1400-9. PMID 25820832 DOI: 10.1039/c5mb00074b |
0.203 |
|
2018 |
Pearce WA, Chen R, Jain N. Pigmentary Maculopathy Associated with Chronic Exposure to Pentosan Polysulfate Sodium. Ophthalmology. PMID 29801663 DOI: 10.1016/J.Ophtha.2018.04.026 |
0.203 |
|
2015 |
Wang C, Wang H, Xu XS, Xu CC, Lai XP, Chen R, Lin HG, Qiu SY. [Molecular Genetic Analysis of One Sudden Unexplained Death in the Young by Whole Exome Sequencing]. Fa Yi Xue Za Zhi. 31: 436-40, 444. PMID 27141800 |
0.202 |
|
2011 |
Wang Y, Ghaffari N, Johnson CD, Braga-Neto UM, Wang H, Chen R, Zhou H. Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. Bmc Bioinformatics. 12: S5. PMID 22165852 DOI: 10.1186/1471-2105-12-S10-S5 |
0.201 |
|
2019 |
Wang Q, Chen R, Cheng F, Wei Q, Ji Y, Yang H, Zhong X, Tao R, Wen Z, Sutcliffe JS, Liu C, Cook EH, Cox NJ, Li B. A Bayesian framework that integrates multi-omics data and gene networks predicts risk genes from schizophrenia GWAS data. Nature Neuroscience. PMID 30988527 DOI: 10.1038/S41593-019-0382-7 |
0.201 |
|
2017 |
Liu C, Zhang X, Zhang Z, Chen R, Zhang Z, Xue Q. Complete Genome Characterization of Novel Chinese Porcine Deltacoronavirus Strain SD. Genome Announcements. 5. PMID 28982988 DOI: 10.1128/genomeA.00930-17 |
0.2 |
|
2023 |
Li W, Chen R, Feng L, Dang X, Liu J, Chen T, Yang J, Su X, Lv L, Li T, Zhang Z, Luo XJ. Genome-wide meta-analysis, functional genomics and integrative analyses implicate new risk genes and therapeutic targets for anxiety disorders. Nature Human Behaviour. PMID 37945807 DOI: 10.1038/s41562-023-01746-y |
0.2 |
|
2023 |
Guo S, Liu X, Cheng X, Jiang Y, Ji S, Liang Q, Koval A, Li Y, Owen LA, Kim IK, Aparicio A, Shen JP, Kopetz S, Weinstein JN, DeAngelis MM, ... Chen R, et al. The DeMixSC deconvolution framework uses single-cell sequencing plus a small benchmark dataset for improved analysis of cell-type ratios in complex tissue samples. Biorxiv : the Preprint Server For Biology. PMID 37873318 DOI: 10.1101/2023.10.10.561733 |
0.2 |
|
2018 |
Chen C, Li T, Zhu S, Liu Z, Shi Z, Zheng X, Chen R, Huang J, Shen Y, Luo S, Wang L, Liu QQ, E Z. Characterization of imprinted genes in rice reveals conservation of regulation and imprinting with other plant species. Plant Physiology. PMID 29914891 DOI: 10.1104/Pp.17.01621 |
0.199 |
|
2012 |
Kocabas F, Mahmoud AI, Sosic D, Porrello ER, Chen R, Garcia JA, DeBerardinis RJ, Sadek HA. Erratum to: The Hypoxic Epicardial and Subepicardial Microenvironment Journal of Cardiovascular Translational Research. 5: 666-666. DOI: 10.1007/S12265-012-9392-5 |
0.198 |
|
2013 |
Nasser W, Santhanam B, Miranda ER, Parikh A, Juneja K, Rot G, Dinh C, Chen R, Zupan B, Shaulsky G, Kuspa A. Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions. Current Biology : Cb. 23: 862-72. PMID 23664307 DOI: 10.1016/J.Cub.2013.04.034 |
0.198 |
|
2022 |
Qin Y, Xu Y, Zhang Y, Gu M, Cai W, Bai Z, Zhang X, Chen R, Sun Y, Wu Y, Wang Z. Transcriptomics analysis of cashmere fineness functional genes. Animal Biotechnology. 1-11. PMID 35253626 DOI: 10.1080/10495398.2022.2042306 |
0.197 |
|
2019 |
Mao Y, Chen N, Cao M, Chen R, Guan X, Wang D. Functional Characterization and Evolutionary Analysis of Glycine-Betaine Biosynthesis Pathway in Red Seaweed . Marine Drugs. 17. PMID 30669580 DOI: 10.3390/md17010070 |
0.196 |
|
2023 |
Xu GJ, Loberg MA, Gallant JN, Sheng Q, Chen SC, Lehmann BD, Shaddy SM, Tigue ML, Phifer CJ, Wang L, Saab-Chalhoub MW, Dehan LM, Wei Q, Chen R, Li B, et al. Molecular signature incorporating the immune microenvironment enhances thyroid cancer outcome prediction. Cell Genomics. 3: 100409. PMID 37868034 DOI: 10.1016/j.xgen.2023.100409 |
0.195 |
|
2020 |
Shen S, Sun F, Zhu M, Chen S, Guan M, Chen R, Tang F, Yin N, Xu X, Tang Z, Li J, Lu K, Qu C. Genome-wide identification AINTEGUMENTA-like (AIL) genes in Brassica species and expression patterns during reproductive development in Brassica napus L. Plos One. 15: e0234411. PMID 32511257 DOI: 10.1371/Journal.Pone.0234411 |
0.193 |
|
2021 |
Wang Z, Wang Y, Hui T, Chen R, Xu Y, Zhang Y, Tian H, Wang W, Cong Y, Guo S, Zhu Y, Zhang X, Guo D, Bai M, Fan Y, et al. Single-Cell Sequencing Reveals Differential Cell Types in Skin Tissues of Liaoning Cashmere Goats and Key Genes Related Potentially to the Fineness of Cashmere Fiber. Frontiers in Genetics. 12: 726670. PMID 34858469 DOI: 10.3389/fgene.2021.726670 |
0.193 |
|
2014 |
Liu G, Wei X, Chen R, Zhou H, Li X, Sun Y, Xie S, Zhu Q, Qu N, Yang G, Chu Y, Wu H, Lan Z, Wang J, Yang Y, et al. A novel mutation of the SLC25A13 gene in a Chinese patient with citrin deficiency detected by target next-generation sequencing. Gene. 533: 547-53. PMID 24161253 DOI: 10.1016/j.gene.2013.10.021 |
0.192 |
|
2010 |
He J, Irwin DM, Chen R, Zhang YP. Stepwise loss of motilin and its specific receptor genes in rodents Journal of Molecular Endocrinology. 44: 37-44. PMID 19696113 DOI: 10.1677/JME-09-0095 |
0.191 |
|
2023 |
Chen R, Li J, Wang J, Ibarra I, Cheng X, Luecken M, Liu J, Monavarfeshani A, Yan W, Zheng Y, Zuo Z, Colborn S, Cortez B, Owen LA, Tran N, et al. Integrated multi-omics single cell atlas of the human retina. Research Square. PMID 38014002 DOI: 10.21203/rs.3.rs-3471275/v1 |
0.19 |
|
2015 |
Chen R, Shen LP, Wang DH, Wang FG, Zeng HY, Chen ZS, Peng YB, Lin YN, Tang X, Deng MH, Yao N, Luo JC, Xu ZH, Bai SN. A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58. Molecular Plant. 8: 1069-89. PMID 25684654 DOI: 10.1016/j.molp.2015.02.004 |
0.189 |
|
2023 |
Wei S, Liao J, Xue T, Yu K, Fu X, Wang R, Dang X, Zhang C, Qiao H, Jiang S, Xiao J, Dong L, Yin J, Yan X, Jia W, ... ... Chen R, et al. Ambient fine particulate matter and allergic symptoms in the middle-aged and elderly population: results from the PIFCOPD study. Respiratory Research. 24: 139. PMID 37231445 DOI: 10.1186/s12931-023-02433-2 |
0.189 |
|
2020 |
He Y, Xu P, Wang C, Xia Y, Yu M, Yang Y, Yu K, Cai X, Qu N, Saito K, Wang J, Hyseni I, Robertson M, Piyarathna B, Gao M, ... ... Chen R, et al. Estrogen receptor-α expressing neurons in the ventrolateral VMH regulate glucose balance. Nature Communications. 11: 2165. PMID 32358493 DOI: 10.1038/S41467-020-15982-7 |
0.188 |
|
2021 |
Li M, Chen R, Gu H, Cheng D, Guo X, Shi C, Li L, Xu G, Gu S, Wu Z, Chen J. Grape Small Auxin Upregulated RNA () 041 Is a Candidate Regulator of Berry Size in Grape. International Journal of Molecular Sciences. 22. PMID 34769249 DOI: 10.3390/ijms222111818 |
0.187 |
|
2023 |
Qiu J, Chen R, Song C, Wang X, Xiang W, Huang S, Su Q, Deng G, Wu J, Chen X. Network pharmacological analysis on the mechanism of Coix seed decoction for osteoarthritis of the knee. Medicine. 102: e34464. PMID 37543793 DOI: 10.1097/MD.0000000000034464 |
0.186 |
|
2016 |
Zhang X, Ning Z, Mayne J, Moore JI, Li J, Butcher J, Deeke SA, Chen R, Chiang CK, Wen M, Mack D, Stintzi A, Figeys D. MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. Microbiome. 4: 31. PMID 27343061 DOI: 10.1186/S40168-016-0176-Z |
0.186 |
|
2015 |
Chen R, Wei Q, Zhan X, Zhong X, Sutcliffe JS, Cox NJ, Cook EH, Li C, Chen W, Li B. A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. Bioinformatics (Oxford, England). 31: 1452-9. PMID 25568282 DOI: 10.1093/Bioinformatics/Btu860 |
0.186 |
|
2017 |
Cui Y, Hu T, Chen R, Yu S, Dong W, Lv X, Pan C. Novel 17-bp Deletion in KDM1B Gene is Significantly Associated with Testis Weight in Male Piglet. Animal Biotechnology. 1-7. PMID 29035139 DOI: 10.1080/10495398.2017.1370427 |
0.186 |
|
2017 |
Ou R, Huang J, Shen H, Liu Z, Zhu Y, Zhong Q, Zheng L, Yao M, She Y, Zhou S, Chen R, Li C, Zhang Q, Liu S. Transcriptome analysis of CD34+ cells from myelodysplastic syndrome patients. Leukemia Research. 62: 40-50. PMID 28982058 DOI: 10.1016/j.leukres.2017.09.003 |
0.185 |
|
2011 |
Chen RR, Han ZY, Li JG, Shi YQ, Zhou XM, Wang JB, Cai XQ, Wang XC, Han Y, Fan DM. Cytotoxic T-lymphocyte antigen 4 gene +49A/G polymorphism significantly associated with susceptibility to primary biliary cirrhosis: a meta-analysis. Journal of Digestive Diseases. 12: 428-35. PMID 22118691 DOI: 10.1111/j.1751-2980.2011.00537.x |
0.184 |
|
2014 |
Mayne J, Starr AE, Ning Z, Chen R, Chiang CK, Figeys D. Fine tuning of proteomic technologies to improve biological findings: advancements in 2011-2013. Analytical Chemistry. 86: 176-95. PMID 24191679 DOI: 10.1021/Ac403551F |
0.183 |
|
2021 |
Li X, Chen R, Ren C, Huang A, Ding W, Wang H. Systematic analysis of the long noncoding RNA (lncRNA)-miRNA-mRNA competing endogenous RNA network to identify prognostic biomarkers and the potential regulatory axis in glioblastoma multiforme. Translational Cancer Research. 10: 4739-4755. PMID 35116328 DOI: 10.21037/tcr-21-1162 |
0.183 |
|
2024 |
Cheng X, Meng X, Chen R, Song Z, Li S, Wei S, Lv H, Zhang S, Tang H, Jiang Y, Zhang R. The molecular subtypes of autoimmune diseases. Computational and Structural Biotechnology Journal. 23: 1348-1363. PMID 38596313 DOI: 10.1016/j.csbj.2024.03.026 |
0.182 |
|
2017 |
Chen R, Wang Z, Chen J, Jiang LY, Qiao GX. Insect-bacteria parallel evolution in multiple-co-obligate-aphid association: a case in Lachninae (Hemiptera: Aphididae). Scientific Reports. 7: 10204. PMID 28860659 DOI: 10.1038/s41598-017-10761-9 |
0.182 |
|
2020 |
Chen R, Shi C, Yao J, Chen W. Online Databases and Non-coding RNAs in Cardiovascular Diseases. Advances in Experimental Medicine and Biology. 1229: 65-78. PMID 32285405 DOI: 10.1007/978-981-15-1671-9_3 |
0.181 |
|
2019 |
Chen B, Qi CY, Chen L, Dai MJ, Miao YY, Chen R, Wei WE, Yang S, Wang HL, Duan XG, Gong MW, Wang Y, Xue ZF. A C1976Y missense mutation in the mouse Ip3r1 gene leads to short-term mydriasis and unfolded protein response in the iris constrictor muscles. Experimental Animals. PMID 31391379 DOI: 10.1538/expanim.19-0007 |
0.181 |
|
2019 |
Du S, Yang Y, Yi P, Luo J, Liu T, Chen R, Liu CJ, Ma T, Li Y, Wang C, Weng J, Liu M, Zhang L, Yang B, Zeng X, et al. A Novel Mutation Causing Reduced E-Cadherin Dimerization Is Associated with Nonsyndromic Cleft Lip With or Without Cleft Palate. Genetic Testing and Molecular Biomarkers. PMID 31638429 DOI: 10.1089/gtmb.2019.0092 |
0.181 |
|
2023 |
Liang Q, Jiang Y, Shieh AW, Zhou D, Chen R, Wang F, Xu M, Niu M, Wang X, Pinto D, Wang Y, Cheng L, Vadukapuram R, Zhang C, Grennan K, et al. The impact of common variants on gene expression in the human brain: from RNA to protein to schizophrenia risk. Biorxiv : the Preprint Server For Biology. PMID 37873195 DOI: 10.1101/2023.06.04.543603 |
0.181 |
|
2024 |
Han JH, Rodenburg K, Hayman T, Calzetti G, Kaminska K, Quinodoz M, Marra M, Wallerich S, Allon G, Nagy ZZ, Knézy K, Li Y, Chen R, Barboni MTS, Yang P, et al. Loss-of-function variants in UBAP1L cause autosomal recessive retinal degeneration. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 101106. PMID 38420906 DOI: 10.1016/j.gim.2024.101106 |
0.18 |
|
2013 |
Griffiths SJ, Koegl M, Boutell C, Zenner HL, Crump CM, Pica F, Gonzalez O, Friedel CC, Barry G, Martin K, Craigon MH, Chen R, Kaza LN, Fossum E, Fazakerley JK, et al. A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication. Plos Pathogens. 9: e1003514. PMID 23950709 DOI: 10.1371/journal.ppat.1003514 |
0.18 |
|
2023 |
Yang Y, Du J, Huang YF, He W, Liu L, Li D, Chen R. Identification of TFR2 as a novel ferroptosis‑related gene that serves an important role in prognosis and progression of triple‑negative breast cancer. Oncology Letters. 27: 43. PMID 38106522 DOI: 10.3892/ol.2023.14176 |
0.18 |
|
2015 |
Xing Y, Wang H, Liu X, Yu X, Chen R, Wang C, Yu X, Sun L. Exploring the genes associated with the response to intravenous immunoglobulin in patients with Kawasaki disease using DNA microarray analysis. Experimental and Molecular Pathology. 98: 7-12. PMID 25449331 DOI: 10.1016/j.yexmp.2014.11.006 |
0.18 |
|
2015 |
Chen R, Wang Z, Chen J, Qiao GX. Avoidance and Potential Remedy Solutions of Chimeras in Reconstructing the Phylogeny of Aphids Using the 16S rRNA Gene of Buchnera: A Case in Lachninae (Hemiptera). International Journal of Molecular Sciences. 16: 20152-67. PMID 26307984 DOI: 10.3390/ijms160920152 |
0.179 |
|
2004 |
Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L. Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring. Analytical Chemistry. 76: 2355-66. PMID 15080748 DOI: 10.1021/Ac0349781 |
0.178 |
|
2023 |
Bollepogu Raja KK, Yeung K, Shim YK, Li Y, Chen R, Mardon G. A single cell genomics atlas of the Drosophila larval eye reveals distinct photoreceptor developmental timelines. Nature Communications. 14: 7205. PMID 37938573 DOI: 10.1038/s41467-023-43037-0 |
0.178 |
|
2023 |
Gan Q, Mao L, Shi R, Chang L, Wang G, Cheng J, Chen R. Prognostic Value and Immune Infiltration of HPV-Related Genes in the Immune Microenvironment of Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma. Cancers. 15. PMID 36900213 DOI: 10.3390/cancers15051419 |
0.177 |
|
2021 |
Chen R, Cao J, Jiang W, Wang S, Cheng J. Upregulated Expression of CYBRD1 Predicts Poor Prognosis of Patients with Ovarian Cancer. Journal of Oncology. 2021: 7548406. PMID 34594380 DOI: 10.1155/2021/7548406 |
0.177 |
|
2021 |
Zhou M, Li J, Luo D, Zhang H, Yu Z, Chen Y, Li Q, Liang F, Chen R. Network Pharmacology and Molecular Docking-Based Investigation: Against Colorectal Cancer via Silencing Expression. Frontiers in Pharmacology. 12: 761980. PMID 34867383 DOI: 10.3389/fphar.2021.761980 |
0.176 |
|
2020 |
Gao C, Huang T, Chen R, Yuan Z, Tian Y, Zhang Y. A Han Chinese Family With Early-Onset Parkinson's Disease Carrying Novel Frameshift Mutation and Compound Heterozygous Mutation of Appearing Incompatible With MDS Clinical Diagnostic Criteria. Frontiers in Neurology. 11: 582323. PMID 33154736 DOI: 10.3389/fneur.2020.582323 |
0.176 |
|
2022 |
Yang Y, Lyu M, Liu J, Wu J, Wang Q, Xie T, Li H, Chen R, Sun D, Yang Y, Yao X. Construction of an SNP fingerprinting database and population genetic analysis of 329 cauliflower cultivars. Bmc Plant Biology. 22: 522. PMID 36357859 DOI: 10.1186/s12870-022-03920-2 |
0.175 |
|
2020 |
Wang Y, Zheng K, Chen X, Chen R, Zou Y. Bioinformatics analysis identifies COL1A1, THBS2 and SPP1 as potential predictors of patient prognosis and immunotherapy response in gastric cancer. Bioscience Reports. PMID 33345281 DOI: 10.1042/BSR20202564 |
0.175 |
|
2013 |
Ren SC, Chen R, Sun YH. Prostate cancer research in China. Asian Journal of Andrology. 15: 350-3. PMID 23603922 DOI: 10.1038/aja.2013.37 |
0.174 |
|
2006 |
Dworzanski JP, Deshpande SV, Chen R, Jabbour RE, Snyder AP, Wick CH, Li L. Mass spectrometry-based proteomics combined with bioinformatic tools for bacterial classification. Journal of Proteome Research. 5: 76-87. PMID 16396497 DOI: 10.1021/Pr050294T |
0.174 |
|
2023 |
Sun J, Li Y, Chen R, Xie Y, Wei J, Li B. Exploring the role of lactylation-related genes in osteosarcoma: A deep dive into prognostic significance and therapeutic potential. Environmental Toxicology. PMID 38009602 DOI: 10.1002/tox.24011 |
0.174 |
|
2022 |
Tang X, Guo D, Yang X, Chen R, Jiang Q, Zeng Z, Li Y, Li Z. Upregulated Immunogenic Cell-Death-Associated Gene Signature Predicts Reduced Responsiveness to Immune-Checkpoint-Blockade Therapy and Poor Prognosis in High-Grade Gliomas. Cells. 11. PMID 36429083 DOI: 10.3390/cells11223655 |
0.173 |
|
2023 |
Chen R, Song C, Qiu J, Su Q, Wang X, Deng G, Cheng K, Chen X, Xiang W, Liu T, Chen X, Wu J. Exploring the potential mechanism of Taohong Siwu decoction in the treatment of avascular necrosis of the femoral head based on network pharmacology and molecular docking. Medicine. 102: e35312. PMID 38115279 DOI: 10.1097/MD.0000000000035312 |
0.173 |
|
2018 |
Xin G, Chen R, Zhang X. Candidate gene and mechanism investigations in congenital obstructive nephropathy based on bioinformatics analysis. Molecular Medicine Reports. PMID 30015886 DOI: 10.3892/mmr.2018.9284 |
0.172 |
|
2023 |
Chen R, Wang Z, Lu T, Liu Y, Ji Y, Yu Y, Tou F, Guo S. Budding uninhibited by benzimidazoles 1 overexpression is associated with poor prognosis and malignant phenotype: A promising therapeutic target for lung adenocarcinoma. Thoracic Cancer. PMID 36825773 DOI: 10.1111/1759-7714.14822 |
0.171 |
|
2013 |
Wang F, Chen R, Ji D, Bai S, Qian M, Deng M. Adjustment method for microarray data generated using two-cycle RNA labeling protocol. Bmc Genomics. 14: 31. PMID 23324182 DOI: 10.1186/1471-2164-14-31 |
0.171 |
|
2022 |
Langouët M, Jolicoeur C, Javed A, Mattar P, Gearhart MD, Daiger SP, Bertelsen M, Tranebjærg L, Rendtorff ND, Grønskov K, Jespersgaard C, Chen R, Sun Z, Li H, Alirezaie N, et al. Mutations in , a co-repressor of , are associated with early-onset retinal degeneration. Science Advances. 8: eabh2868. PMID 36070393 DOI: 10.1126/sciadv.abh2868 |
0.171 |
|
2022 |
Mei H, Zhao T, Dong Z, Han J, Xu B, Chen R, Zhang J, Zhang J, Hu Y, Zhang T, Fang L. Population-Scale Polymorphic Short Tandem Repeat Provides an Alternative Strategy for Allele Mining in Cotton. Frontiers in Plant Science. 13: 916830. PMID 35599867 DOI: 10.3389/fpls.2022.916830 |
0.169 |
|
2024 |
Sun C, Cheng X, Xu J, Chen H, Tao J, Dong Y, Wei S, Chen R, Meng X, Ma Y, Tian H, Guo X, Bi S, Zhang C, Kang J, et al. A review of disease risk prediction methods and applications in the omics era. Proteomics. e2300359. PMID 38522029 DOI: 10.1002/pmic.202300359 |
0.169 |
|
2020 |
Xu L, Wang L, Jiang C, Zhu Q, Chen R, Wang J, Wang S. Biological effect of ribosomal protein L32 on human breast cancer cell behavior. Molecular Medicine Reports. 22: 2478-2486. PMID 32705264 DOI: 10.3892/mmr.2020.11302 |
0.168 |
|
2021 |
Chen R, Wang X, Dai Z, Wang Z, Wu W, Hu Z, Zhang X, Liu Z, Zhang H, Cheng Q. TNFSF13 Is a Novel Onco-Inflammatory Marker and Correlates With Immune Infiltration in Gliomas. Frontiers in Immunology. 12: 713757. PMID 34712225 DOI: 10.3389/fimmu.2021.713757 |
0.168 |
|
2022 |
Chen R, Wu W, Liu T, Zhao Y, Wang Y, Zhang H, Wang Z, Dai Z, Zhou X, Luo P, Zhang J, Liu Z, Zhang LY, Cheng Q. Large-scale bulk RNA-seq analysis defines immune evasion mechanism related to mast cell in gliomas. Frontiers in Immunology. 13: 914001. PMID 36159780 DOI: 10.3389/fimmu.2022.914001 |
0.168 |
|
2021 |
Liang Q, Wu N, Zaneveld S, Liu H, Fu S, Wang K, Bertrand R, Wang J, Li Y, Chen R. Transcript isoforms of Reep6 have distinct functions in the retina. Human Molecular Genetics. PMID 34104971 DOI: 10.1093/hmg/ddab157 |
0.167 |
|
2023 |
Gunasekara CJ, MacKay H, Scott CA, Li S, Laritsky E, Baker MS, Grimm SL, Jun G, Li Y, Chen R, Wiemels JL, Coarfa C, Waterland RA. Systemic interindividual epigenetic variation in humans is associated with transposable elements and under strong genetic control. Genome Biology. 24: 2. PMID 36631879 DOI: 10.1186/s13059-022-02827-3 |
0.167 |
|
2022 |
Ji Y, Chen R, Wang Q, Wei Q, Tao R, Li B. A Bayesian framework to integrate multi-level genome-scale data for Autism risk gene prioritization. Bmc Bioinformatics. 23: 146. PMID 35459094 DOI: 10.1186/s12859-022-04616-y |
0.167 |
|
2022 |
Ji Y, Chen R, Wang Q, Wei Q, Tao R, Li B. Leveraging Gene-Level Prediction as Informative Covariate in Hypothesis Weighting Improves Power for Rare Variant Association Studies. Genes. 13. PMID 35205424 DOI: 10.3390/genes13020381 |
0.167 |
|
2017 |
Ren S, Wei GH, Liu D, Wang L, Hou Y, Zhu S, Peng L, Zhang Q, Cheng Y, Su H, Zhou X, Zhang J, Li F, Zheng H, Zhao Z, ... ... Chen R, et al. Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression. European Urology. PMID 28927585 DOI: 10.1016/J.Eururo.2017.08.027 |
0.167 |
|
2020 |
Bertrand RE, Wang J, Xiong KH, Thangavel C, Qian X, Ba-Abbad R, Liang Q, Simões RT, Sampaio SAM, Carss KJ, Lucy Raymond F, Robson AG, Webster AR, Arno G, Porto FBO, ... Chen R, et al. Ceramide synthase TLCD3B is a novel gene associated with human recessive retinal dystrophy. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 33077892 DOI: 10.1038/s41436-020-01003-x |
0.165 |
|
2021 |
Liang S, Liang Q, Chen R, Chen K. Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34232885 DOI: 10.1109/TCBB.2021.3094650 |
0.165 |
|
2023 |
Du S, Zeng S, Song L, Ma H, Chen R, Luo J, Wang X, Ma T, Xu X, Sun H, Yi P, Guo J, Huang Y, Liu M, Wang T, et al. Functional characterization of novel NPRL3 mutations identified in three families with focal epilepsy. Science China. Life Sciences. PMID 37071290 DOI: 10.1007/s11427-022-2313-1 |
0.165 |
|
2020 |
Wendt G, Zhao L, Chen R, Liu C, O'Donoghue AJ, Caffrey CR, Reese ML, Collins JJ. A single-cell RNA-seq atlas of identifies a key regulator of blood feeding. Science (New York, N.Y.). 369: 1644-1649. PMID 32973030 DOI: 10.1126/science.abb7709 |
0.165 |
|
2019 |
Chen M, Yan H, Wang K, Cui Y, Chen R, Liu J, Zhu H, Qu L, Pan C. Goat SPEF2: Expression profile, indel variants identification and association analysis with litter size. Theriogenology. 139: 147-155. PMID 31408832 DOI: 10.1016/j.theriogenology.2019.08.007 |
0.164 |
|
2019 |
Cui Y, Chen R, Lv X, Pan C. Detection of coding sequence, mRNA expression and three insertions/deletions (indels) of KDM6A gene in male pig. Theriogenology. 133: 10-21. PMID 31051389 DOI: 10.1016/j.theriogenology.2019.04.023 |
0.164 |
|
2023 |
Chen R, Shi F, Xiang Y, Lai W, Ji G. Establishment of CRISPR-Cpf1-assisted gene editing tool and engineering of 4-hydroxyisoleucine biosynthesis in Corynebacterium glutamicum. World Journal of Microbiology & Biotechnology. 39: 266. PMID 37524856 DOI: 10.1007/s11274-023-03705-1 |
0.164 |
|
2021 |
Li JM, Kim S, Zhang Y, Bian F, Hu J, Lu R, Pflugfelder SC, Chen R, Li DQ. Single-Cell Transcriptomics Identifies a Unique Entity and Signature Markers of Transit-Amplifying Cells in Human Corneal Limbus. Investigative Ophthalmology & Visual Science. 62: 36. PMID 34297801 DOI: 10.1167/iovs.62.9.36 |
0.164 |
|
2015 |
Liu S, Tsai WH, Ding Y, Chen R, Fang Z, Huo Z, Kim S, Ma T, Chang TY, Priedigkeit NM, Lee AV, Luo J, Wang HW, Chung IF, Tseng GC. Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data. Nucleic Acids Research. PMID 26582927 DOI: 10.1093/nar/gkv1234 |
0.163 |
|
2019 |
Hu M, Ou-Yang W, Jing D, Chen R. Clinical Prognostic Significance of HOXC9 Expression in Patients with Colorectal Cancer. Clinical Laboratory. 65. PMID 31414766 DOI: 10.7754/Clin.Lab.2019.190122 |
0.163 |
|
2020 |
Xiang C, Huang M, Xiong T, Rong F, Li L, Liu DX, Chen RA. Transcriptomic Analysis and Functional Characterization Reveal the Duck Interferon Regulatory Factor 1 as an Important Restriction Factor in the Replication of Tembusu Virus. Frontiers in Microbiology. 11: 2069. PMID 32983049 DOI: 10.3389/fmicb.2020.02069 |
0.163 |
|
2013 |
Chen R, Ren S, Sun Y. Genome-wide association studies on prostate cancer: the end or the beginning? Protein & Cell. 4: 677-86. PMID 23982739 DOI: 10.1007/s13238-013-3055-4 |
0.162 |
|
2022 |
Fang J, Zhang P, Wang Q, Chiang CW, Zhou Y, Hou Y, Xu J, Chen R, Zhang B, Lewis SJ, Leverenz JB, Pieper AA, Li B, Li L, Cummings J, et al. Artificial intelligence framework identifies candidate targets for drug repurposing in Alzheimer's disease. Alzheimer's Research & Therapy. 14: 7. PMID 35012639 DOI: 10.1186/s13195-021-00951-z |
0.162 |
|
2018 |
Chen R, Huang LH, Gao YY, Yang JZ, Wang Y. Identification of differentially expressed genes in MG63 osteosarcoma cells with drug‑resistance by microarray analysis. Molecular Medicine Reports. PMID 30569145 DOI: 10.3892/mmr.2018.9774 |
0.162 |
|
2022 |
Lu J, Xiong K, Qian X, Choi J, Shim YK, Burnett J, Mardon G, Chen R. Spata7 is required for maintenance of the retinal connecting cilium. Scientific Reports. 12: 5575. PMID 35368022 DOI: 10.1038/s41598-022-09530-0 |
0.162 |
|
2023 |
Liu D, Chen R, He Y, Wang YJ, Lin LR, Liu LL, Yang TC, Tong ML. Longitudinal Variations in the Gene of Treponema pallidum in an Amoy Strain-Infected Rabbit Model. Microbiology Spectrum. e0106723. PMID 37347187 DOI: 10.1128/spectrum.01067-23 |
0.162 |
|
2002 |
Qi ZX, Zeng H, Li XL, Chen CB, Song WQ, Chen RY. The molecular characterization of maize B chromosome specific AFLPs. Cell Research. 12: 63-8. PMID 11942412 DOI: 10.1038/sj.cr.7290111 |
0.161 |
|
2009 |
Han G, Ye M, Jiang X, Chen R, Ren J, Xue Y, Wang F, Song C, Yao X, Zou H. Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search. Analytical Chemistry. 81: 5794-805. PMID 19522514 DOI: 10.1021/Ac900702G |
0.16 |
|
2021 |
Marques JP, Porto FBO, Carvalho AL, Neves E, Chen R, Sampaio SAM, Murta J, Saraiva J, Silva R. EYS-Associated Sector Retinitis Pigmentosa. Graefe's Archive For Clinical and Experimental Ophthalmology = Albrecht Von Graefes Archiv Fur Klinische Und Experimentelle Ophthalmologie. PMID 34568954 DOI: 10.1007/s00417-021-05411-w |
0.16 |
|
2024 |
Zhou S, Lei S, She Y, Shi H, Li Y, Zhou X, Chen R. Running Improves Muscle Mass by Activating Autophagic Flux and Inhibiting Ubiquitination Degradation in Mdx Mice. Gene. 148136. PMID 38185293 DOI: 10.1016/j.gene.2024.148136 |
0.16 |
|
2021 |
Ji J, Chen R, Zhao L, Xu Y, Cao Z, Xu H, Chen X, Shi X, Zhu Y, Lyu J, Jiang J, Wang Y, Zhou T, He J, Wei X, et al. Circulating exosomal mRNA profiling identifies novel signatures for the detection of prostate cancer. Molecular Cancer. 20: 58. PMID 33785037 DOI: 10.1186/s12943-021-01349-z |
0.16 |
|
2023 |
Lin Y, Zhu Y, Cui Y, Qian H, Yuan Q, Chen R, Lin Y, Chen J, Zhou X, Shi C, He H, Hu T, Gu C, Yu X, Zhu X, et al. Identification of natural allelic variation in TTL1 controlling thermotolerance and grain size by a rice super pan-genome. Journal of Integrative Plant Biology. PMID 37728044 DOI: 10.1111/jipb.13568 |
0.16 |
|
2022 |
Duncan CJA, Skouboe MK, Howarth S, Hollensen AK, Chen R, Børresen ML, Thompson BJ, Stremenova Spegarova J, Hatton CF, Stæger FF, Andersen MK, Whittaker J, Paludan SR, Jørgensen SE, Thomsen MK, et al. Life-threatening viral disease in a novel form of autosomal recessive IFNAR2 deficiency in the Arctic. The Journal of Experimental Medicine. 219. PMID 35442417 DOI: 10.1084/jem.20212427 |
0.158 |
|
2022 |
Chen R, Liu J, Li S, Li X, Huo Y, Yao YG, Xiao X, Li M, Luo XJ. Functional genomics elucidates regulatory mechanisms of Parkinson's disease-associated variants. Bmc Medicine. 20: 68. PMID 35168626 DOI: 10.1186/s12916-022-02264-w |
0.158 |
|
2021 |
Wang W, Hu S, Cao Y, Chen R, Wang Z, Cao X. Selection and evaluation of reference genes for qRT-PCR of Scutellaria baicalensis Georgi under different experimental conditions. Molecular Biology Reports. PMID 33511512 DOI: 10.1007/s11033-021-06153-y |
0.158 |
|
2018 |
Chen R, Shi YH, Zhang H, Hu JY, Luo Y. Systematic prediction of target genes and pathways in cervical cancer from microRNA expression data. Oncology Letters. 15: 9994-10000. PMID 29928371 DOI: 10.3892/ol.2018.8566 |
0.158 |
|
2017 |
Chen ZS, Liu XF, Wang DH, Chen R, Zhang X, Xu ZH, Bai SN. Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development. Plant Physiology. PMID 29158333 DOI: 10.1104/pp.17.01419 |
0.157 |
|
2013 |
Yu YP, Ding Y, Chen R, Liao SG, Ren BG, Michalopoulos A, Michalopoulos G, Nelson J, Tseng GC, Luo JH. Whole-genome methylation sequencing reveals distinct impact of differential methylations on gene transcription in prostate cancer. The American Journal of Pathology. 183: 1960-70. PMID 24113458 DOI: 10.1016/J.Ajpath.2013.08.018 |
0.157 |
|
2015 |
Sun X, Hu Z, Chen R, Jiang Q, Song G, Zhang H, Xi Y. Targeted mutagenesis in soybean using the CRISPR-Cas9 system. Scientific Reports. 5: 10342. PMID 26022141 DOI: 10.1038/srep10342 |
0.156 |
|
2022 |
Yang H, Gan L, Chen R, Li D, Zhang J, Wang Z. From multi-omics data to the cancer druggable gene discovery: a novel machine learning-based approach. Briefings in Bioinformatics. PMID 36515158 DOI: 10.1093/bib/bbac528 |
0.156 |
|
2020 |
Zhang W, Shi X, Chen R, Zhu Y, Peng S, Chang Y, Nian X, Xiao G, Fang Z, Li Y, Cao Z, Zhao L, Liu G, Sun Y, Ren S. Novel Long Non-coding RNA lncAMPC Promotes Metastasis and Immunosuppression in Prostate Cancer by Stimulating LIF/LIFR Expression. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 32592689 DOI: 10.1016/j.ymthe.2020.06.013 |
0.156 |
|
2010 |
Wang F, Chen R, Zhu J, Sun D, Song C, Wu Y, Ye M, Wang L, Zou H. A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis. Analytical Chemistry. 82: 3007-15. PMID 20230046 DOI: 10.1021/ac100075y |
0.156 |
|
2016 |
Wang F, Sun Y, Ruan J, Chen R, Chen X, Chen C, Kreuze JF, Fei Z, Zhu X, Gao S. Using Small RNA Deep Sequencing Data to Detect Human Viruses. Biomed Research International. 2016: 2596782. PMID 27066498 DOI: 10.1155/2016/2596782 |
0.156 |
|
2019 |
Ma J, Wang J, Ghoraie LS, Men X, Chen R, Dai P. Comprehensive expression-based isoform biomarkers predictive of drug responses based on isoform co-expression networks and clinical data. Genomics. PMID 31029864 DOI: 10.1016/j.ygeno.2019.04.017 |
0.156 |
|
2012 |
Chen R, Irwin DM, Zhang YP. Differences in selection drive olfactory receptor genes in different directions in dogs and wolf. Molecular Biology and Evolution. 29: 3475-84. PMID 22683813 DOI: 10.1093/molbev/mss153 |
0.155 |
|
2022 |
Bai Z, Xu Y, Gu M, Cai W, Zhang Y, Qin Y, Chen R, Sun Y, Wu Y, Wang Z. Proteomic analysis of coarse and fine skin tissues of Liaoning cashmere goat. Functional & Integrative Genomics. PMID 35366687 DOI: 10.1007/s10142-022-00856-6 |
0.154 |
|
2014 |
Jusiak B, Wang F, Karandikar UC, Kwak SJ, Wang H, Chen R, Mardon G. Genome-wide DNA binding pattern of the homeodomain transcription factor Sine oculis (So) in the developing eye of Drosophila melanogaster. Genomics Data. 2: 153-155. PMID 25126519 DOI: 10.1016/j.gdata.2014.06.016 |
0.154 |
|
2019 |
Zhao Y, Qu H, Hu J, Fu J, Chen R, Li C, Cao S, Wen Y, Wu R, Zhao Q, Yan Q, Wen X, Huang X. Characterization and Pathogenicity of the Porcine Deltacoronavirus Isolated in Southwest China. Viruses. 11. PMID 31752115 DOI: 10.3390/v11111074 |
0.154 |
|
2014 |
Li LT, Zhao J, Chen R, Wang JS. Two novel VPS33B mutations in a patient with arthrogryposis, renal dysfunction and cholestasis syndrome in mainland China. World Journal of Gastroenterology. 20: 326-9. PMID 24415890 DOI: 10.3748/wjg.v20.i1.326 |
0.154 |
|
2006 |
Xing Y, Ichida F, Matsuoka T, Isobe T, Ikemoto Y, Higaki T, Tsuji T, Haneda N, Kuwabara A, Chen R, Futatani T, Tsubata S, Watanabe S, Watanabe K, Hirono K, et al. Genetic analysis in patients with left ventricular noncompaction and evidence for genetic heterogeneity. Molecular Genetics and Metabolism. 88: 71-7. PMID 16427346 DOI: 10.1016/J.YMGME.2005.11.009 |
0.153 |
|
2020 |
Jiang Y, Giase G, Grennan K, Shieh AW, Xia Y, Han L, Wang Q, Wei Q, Chen R, Liu S, White KP, Chen C, Li B, Liu C. DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data. Plos Computational Biology. 16: e1007522. PMID 32282793 DOI: 10.1371/journal.pcbi.1007522 |
0.153 |
|
2022 |
Dou J, Liang S, Mohanty V, Miao Q, Huang Y, Liang Q, Cheng X, Kim S, Choi J, Li Y, Li L, Daher M, Basar R, Rezvani K, Chen R, et al. Bi-order multimodal integration of single-cell data. Genome Biology. 23: 112. PMID 35534898 DOI: 10.1186/s13059-022-02679-x |
0.153 |
|
2021 |
Li M, Sun L, Gu H, Cheng D, Guo X, Chen R, Wu Z, Jiang J, Fan X, Chen J. Genome-wide characterization and analysis of bHLH transcription factors related to anthocyanin biosynthesis in spine grapes (Vitis davidii). Scientific Reports. 11: 6863. PMID 33767241 DOI: 10.1038/s41598-021-85754-w |
0.152 |
|
2017 |
Zhang X, Zhang S, Ma L, Jiang E, Xu H, Chen R, Yang Q, Chen H, Li Z, Lan X. Reduced representation bisulfite sequencing (RRBS) of dairy goat mammary glands reveals DNA methylation profiles of integrated genome-wide and critical milk-related genes. Oncotarget. 8: 115326-115344. PMID 29383163 DOI: 10.18632/oncotarget.23260 |
0.152 |
|
2022 |
Xu S, Hao Z, Li Y, Zhou Y, Shao R, Chen R, Zheng M, Xu Y, Wang H. Biochemical toxicity and transcriptome aberration induced by dinotefuran in Bombyx mori. Environmental Pollution (Barking, Essex : 1987). 307: 119562. PMID 35659910 DOI: 10.1016/j.envpol.2022.119562 |
0.152 |
|
2021 |
Chen B, Wang HL, Chen R, Chen L, Yang S, Wang Y, Xue ZF. An L314Q mutation in Map3k1 gene results in failure of eyelid fusion in the N-ethyl-N-nitrosourea-induced mutant line. Experimental Animals. PMID 34078823 DOI: 10.1538/expanim.21-0005 |
0.152 |
|
2009 |
Zhu HY, Wang SW, Martin LJ, Liu L, Li YH, Chen R, Wang L, Zhang ML, Benson DW. The role of mitochondrial genome in essential hypertension in a Chinese Han population. European Journal of Human Genetics : Ejhg. 17: 1501-6. PMID 19401720 DOI: 10.1038/ejhg.2009.63 |
0.152 |
|
2021 |
Shi X, Jiang Y, Kitano A, Hu T, Murdaugh RL, Li Y, Hoegenauer KA, Chen R, Takahashi K, Nakada D. Nuclear NAD homeostasis governed by NMNAT1 prevents apoptosis of acute myeloid leukemia stem cells. Science Advances. 7. PMID 34290089 DOI: 10.1126/sciadv.abf3895 |
0.152 |
|
2017 |
Liu Z, Huang J, Zhong Q, She Y, Ou R, Li C, Chen R, Yao M, Zhang Q, Liu S. Network-based analysis of the molecular mechanisms of multiple myeloma and monoclonal gammopathy of undetermined significance. Oncology Letters. 14: 4167-4175. PMID 28943924 DOI: 10.3892/ol.2017.6723 |
0.151 |
|
2019 |
Liu ZW, Zhuang ZC, Chen R, Wang XR, Zhang HL, Li SH, Wang ZY, Wen HL. Enterovirus 71 VP1 Protein Regulates Viral Replication in SH-SY5Y Cells via the mTOR Autophagy Signaling Pathway. Viruses. 12. PMID 31861844 DOI: 10.3390/v12010011 |
0.151 |
|
2022 |
Chen Z, Chen R, Ou Y, Lu J, Jiang Q, Liu G, Wang L, Liu Y, Zhou Z, Yang B, Zuo L. Construction of an HLA Classifier for Early Diagnosis, Prognosis, and Recognition of Immunosuppression in Sepsis by Multiple Transcriptome Datasets. Frontiers in Physiology. 13: 870657. PMID 35685286 DOI: 10.3389/fphys.2022.870657 |
0.151 |
|
2022 |
Yang Y, Chen R, Gong Y, Yang W, Li K, Fan W, Gou S, Gao P, He T, Cai K. Double-drug loading upconversion nanoparticles for monitoring and therapy of a MYC/BCL6-positive double-hit diffuse large B-cell lymphoma. Biomaterials. 287: 121607. PMID 35696785 DOI: 10.1016/j.biomaterials.2022.121607 |
0.151 |
|
2021 |
Chen R, Du S, Yao Y, Zhang L, Luo J, Shen Y, Xu Z, Zeng X, Zhang L, Liu M, Yin C, Tang B, Tan J, Xu X, Liu JY. A Novel SPAST Mutation Results in Spastin Accumulation and Defects in Microtubule Dynamics. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 34927746 DOI: 10.1002/mds.28885 |
0.15 |
|
2019 |
Chen RL, Wang QX, Ma X. Precision Medicine in Autoimmune Hepatitis. Journal of Digestive Diseases. PMID 31099976 DOI: 10.1111/1751-2980.12786 |
0.15 |
|
2024 |
Niu H, Zhou M, Zogona D, Xing Z, Wu T, Chen R, Cui D, Liang F, Xu X. : a potential candidate for ameliorating metabolic diseases. Frontiers in Immunology. 15: 1370658. PMID 38571945 DOI: 10.3389/fimmu.2024.1370658 |
0.15 |
|
2019 |
Li S, Yuan L, Dai G, Chen RA, Liu DX, Fung TS. Regulation of the ER Stress Response by the Ion Channel Activity of the Infectious Bronchitis Coronavirus Envelope Protein Modulates Virion Release, Apoptosis, Viral Fitness, and Pathogenesis. Frontiers in Microbiology. 10: 3022. PMID 32038520 DOI: 10.3389/fmicb.2019.03022 |
0.15 |
|
2016 |
Hong X, Qin J, Chen R, Yuan L, Zha J, Wang Z. Identification and characterization of novel and conserved microRNAs in several tissues of the Chinese rare minnow (Gobiocypris rarus) based on illumina deep sequencing technology. Bmc Genomics. 17: 283. PMID 27066897 DOI: 10.1186/s12864-016-2606-5 |
0.149 |
|
2020 |
Wang D, You W, Chen N, Cao M, Tang X, Guan X, Qu W, Chen R, Mao Y, Poetsch A. Comparative Quantitative Proteomics Reveals the Desiccation Stress Responses of the Intertidal Seaweed NEOPORPHYRA haitanensis. Journal of Phycology. 56: 1664-1675. PMID 33460107 DOI: 10.1111/jpy.13052 |
0.149 |
|
2019 |
Han N, Yang L, Zhang X, Zhou Y, Chen R, Yu Y, Dong Z, Zhang M. LncRNA MATN1-AS1 prevents glioblastoma cell from proliferation and invasion via RELA regulation and MAPK signaling pathway. Annals of Translational Medicine. 7: 784. PMID 32042800 DOI: 10.21037/atm.2019.11.36 |
0.149 |
|
2013 |
Dou LM, Fang LJ, Wang XH, Lu W, Chen R, Li LT, Zhao J, Wang JS. [Mutation analysis of FAH gene in patients with tyrosinemia type 1]. Zhonghua Er Ke Za Zhi. Chinese Journal of Pediatrics. 51: 302-7. PMID 23927806 |
0.149 |
|
2022 |
Zhang J, Mei H, Lu H, Chen R, Hu Y, Zhang T. Transcriptome Time-Course Analysis in the Whole Period of Cotton Fiber Development. Frontiers in Plant Science. 13: 864529. PMID 35463423 DOI: 10.3389/fpls.2022.864529 |
0.149 |
|
2024 |
Zhou Q, Zhao J, Chen R, Zhao C. First Report of Leaf spot Disease Caused by in China. Plant Disease. PMID 38457634 DOI: 10.1094/PDIS-12-23-2677-PDN |
0.148 |
|
2024 |
Chen R, Zhang H, Li L, Li J, Xie J, Weng J, Tan H, Liu Y, Guo T, Wang M. Roles of ubiquitin-specific proteases in inflammatory diseases. Frontiers in Immunology. 15: 1258740. PMID 38322269 DOI: 10.3389/fimmu.2024.1258740 |
0.148 |
|
2023 |
Liang Q, Cheng X, Wang J, Owen L, Shakoor A, Lillvis JL, Zhang C, Farkas M, Kim IK, Li Y, DeAngelis M, Chen R. A multi-omics atlas of the human retina at single-cell resolution. Cell Genomics. 3: 100298. PMID 37388908 DOI: 10.1016/j.xgen.2023.100298 |
0.148 |
|
2012 |
Zhu J, Wang F, Chen R, Cheng K, Xu B, Guo Z, Liang X, Ye M, Zou H. Centrifugation assisted microreactor enables facile integration of trypsin digestion, hydrophilic interaction chromatography enrichment, and on-column deglycosylation for rapid and sensitive N-glycoproteome analysis. Analytical Chemistry. 84: 5146-53. PMID 22590972 DOI: 10.1021/Ac3000732 |
0.148 |
|
2022 |
MacKay H, Gunasekara CJ, Yam KY, Srisai D, Yalamanchili HK, Li Y, Chen R, Coarfa C, Waterland RA. Sex-specific epigenetic development in the mouse hypothalamic arcuate nucleus pinpoints human genomic regions associated with body mass index. Science Advances. 8: eabo3991. PMID 36170368 DOI: 10.1126/sciadv.abo3991 |
0.148 |
|
2015 |
Chen R, Zhang Z, Xue Z, Wang L, Fu M, Lu Y, Bai L, Zhang P, Fan Z. Protein-protein interaction network of gene expression in the hydrocortisone-treated keloid. International Journal of Dermatology. 54: 549-54. PMID 25660986 DOI: 10.1111/ijd.12743 |
0.148 |
|
2010 |
Li JX, Chen R, Fu CL, Nie JH, Tong J. Screening of differential expressive genes in murine cells following radon exposure. Journal of Toxicology and Environmental Health. Part A. 73: 499-506. PMID 20391129 DOI: 10.1080/15287390903523444 |
0.148 |
|
2022 |
Han D, Wu G, Chen R, Drexler HCA, MacCarthy CM, Kim KP, Adachi K, Gerovska D, Mavrommatis L, Bedzhov I, Araúzo-Bravo MJ, Schöler HR. A balanced Oct4 interactome is crucial for maintaining pluripotency. Science Advances. 8: eabe4375. PMID 35171666 DOI: 10.1126/sciadv.abe4375 |
0.147 |
|
2022 |
Guan X, Mao Y, Stiller JW, Shu S, Pang Y, Qu W, Zhang Z, Tang F, Qian H, Chen R, Sun B, Guoying D, Mo Z, Kong F, Tang X, et al. Comparative Gene Expression and Physiological Analyses Reveal Molecular Mechanisms in Wound-Induced Spore Formation in the Edible Seaweed Nori. Frontiers in Plant Science. 13: 840439. PMID 35371140 DOI: 10.3389/fpls.2022.840439 |
0.147 |
|
2023 |
Gou X, Zhang Y, Zhu S, Yu X, Qin L, Cheng X, Zhang Y, Ding S, Chen R, Tang H, Cheng W. Asymmetric Hairpins DNA Encapsulated Silver Nanoclusters for In Situ Fluorescence Imaging of Fusion Gene Isoforms in Bone Marrow. Small (Weinheim An Der Bergstrasse, Germany). e2303034. PMID 37365695 DOI: 10.1002/smll.202303034 |
0.147 |
|
2012 |
Zhao J, Fang LJ, Setchell KD, Chen R, Li LT, Wang JS. Primary ∆4-3-oxosteroid 5β-reductase deficiency: two cases in China. World Journal of Gastroenterology. 18: 7113-7. PMID 23323017 DOI: 10.3748/wjg.v18.i47.7113 |
0.147 |
|
2022 |
Song C, Zhang Y, Chen R, Zhu F, Wei P, Pan H, Chen C, Dai J. Label-Free Quantitative Proteomics Unravel the Impacts of Salt Stress on . Frontiers in Plant Science. 13: 874579. PMID 35646023 DOI: 10.3389/fpls.2022.874579 |
0.146 |
|
2024 |
Li J, Choi J, Cheng X, Ma J, Pema S, Sanes JR, Mardon G, Frankfort BJ, Tran NM, Li Y, Chen R. Comprehensive single-cell atlas of the mouse retina. Biorxiv : the Preprint Server For Biology. PMID 38328114 DOI: 10.1101/2024.01.24.577060 |
0.146 |
|
2016 |
Zhang X, Ning Z, Mayne J, Deeke SA, Li J, Starr AE, Chen R, Singleton R, Butcher J, Mack DR, Stintzi A, Figeys D. In vitro metabolic labeling of intestinal microbiota for quantitative metaproteomics. Analytical Chemistry. PMID 27248155 DOI: 10.1021/Acs.Analchem.6B01412 |
0.146 |
|
2022 |
Wang W, He X, Zhang Y, Qiao Y, Shi J, Chen R, Chen J, Xiang Y, Wang Z, Chen G, Huang J, Huang T, Wei T, Mo M, Wei P. Analysis of the global origin, evolution and transmission dynamics of the emerging novel variant IBDV (A2dB1b): the accumulation of critical aa-residue mutations and commercial trade contributes to the emergence and transmission of novel variants. Transboundary and Emerging Diseases. PMID 35717667 DOI: 10.1111/tbed.14634 |
0.146 |
|
2019 |
Duncan CJA, Thompson BJ, Chen R, Rice GI, Gothe F, Young DF, Lovell SC, Shuttleworth VG, Brocklebank V, Corner B, Skelton AJ, Bondet V, Coxhead J, Duffy D, Fourrage C, et al. Severe type I interferonopathy and unrestrained interferon signaling due to a homozygous germline mutation in . Science Immunology. 4. PMID 31836668 DOI: 10.1126/sciimmunol.aav7501 |
0.146 |
|
2020 |
Duval S, Abu-Thuraia A, Elkholi IE, Chen R, Seebun D, Mayne J, Côté JF, Figeys D, Seidah NG. Shedding of cancer susceptibility candidate 4 by the convertases PC7/furin unravels a novel secretory protein implicated in cancer progression. Cell Death & Disease. 11: 665. PMID 32820145 DOI: 10.1038/S41419-020-02893-0 |
0.146 |
|
2020 |
Wang D, Yu X, Xu K, Bi G, Cao M, Zelzion E, Fu C, Sun P, Liu Y, Kong F, Du G, Tang X, Yang R, Wang J, Tang L, ... ... Chen R, et al. Pyropia yezoensis genome reveals diverse mechanisms of carbon acquisition in the intertidal environment. Nature Communications. 11: 4028. PMID 32788591 DOI: 10.1038/S41467-020-17689-1 |
0.145 |
|
2018 |
Chen R, Jiang T, She Y, Xie S, Zhou S, Li C, Ou J, Liu Y. Comprehensive analysis of lncRNAs and mRNAs with associated co-expression and ceRNA networks in C2C12 myoblasts and myotubes. Gene. PMID 29331478 DOI: 10.1016/j.gene.2018.01.039 |
0.145 |
|
2017 |
Huang J, Liu Z, Sun Y, Zhong Q, Xu L, Ou R, Li C, Chen R, Yao M, Zhang Q, Liu S. Use of methylation profiling to identify significant differentially methylated genes in bone marrow mesenchymal stromal cells from acute myeloid leukemia. International Journal of Molecular Medicine. PMID 29207054 DOI: 10.3892/ijmm.2017.3271 |
0.145 |
|
2014 |
Jusiak B, Karandikar UC, Kwak SJ, Wang F, Wang H, Chen R, Mardon G. Regulation of Drosophila eye development by the transcription factor Sine oculis. Plos One. 9: e89695. PMID 24586968 DOI: 10.1371/journal.pone.0089695 |
0.144 |
|
2020 |
Lu Y, Zhou SK, Chen R, Jiang LX, Yang LL, Bi TN. Knockdown of SAR1B suppresses proliferation and induces apoptosis of RKO colorectal cancer cells. Oncology Letters. 20: 186. PMID 32952655 DOI: 10.3892/ol.2020.12048 |
0.144 |
|
2016 |
Yan Q, Chen R, Sutcliffe JS, Cook EH, Weeks DE, Li B, Chen W. The impact of genotype calling errors on family-based studies. Scientific Reports. 6: 28323. PMID 27328765 DOI: 10.1038/Srep28323 |
0.144 |
|
2017 |
Wang J, Zhou Y, Fei X, Chen X, Chen R, Zhu Z, Chen Y. Integrative bioinformatics analysis identifies ROBO1 as a potential therapeutic target modified by miR-218 in hepatocellular carcinoma. Oncotarget. 8: 61327-61337. PMID 28977866 DOI: 10.18632/oncotarget.18099 |
0.144 |
|
2008 |
Zhu HY, Wang SW, Liu L, Li YH, Chen R, Wang L, Holliman CJ. A mitochondrial mutation A4401G is involved in the pathogenesis of left ventricular hypertrophy in Chinese hypertensives. European Journal of Human Genetics : Ejhg. 17: 172-8. PMID 18701880 DOI: 10.1038/ejhg.2008.151 |
0.144 |
|
2023 |
Xu Y, Zhang Y, Qin Y, Gu M, Chen R, Sun Y, Wu Y, Li Q, Qiao Y, Wang X, Zhang Q, Kong L, Li S, Wang Z. Multi-omics analysis of functional substances and expression verification in cashmere fineness. Bmc Genomics. 24: 720. PMID 38017403 DOI: 10.1186/s12864-023-09825-0 |
0.144 |
|
2012 |
Sun Z, Chen R, Cheng K, Liu H, Qin H, Ye M, Zou H. A new method for quantitative analysis of cell surface glycoproteome. Proteomics. 12: 3328-37. PMID 23001842 DOI: 10.1002/Pmic.201200150 |
0.144 |
|
2022 |
Wang M, Cun Z, Peng J, Chen R, Li J. Type 2 congenital generalized lipodystrophy with a heterozygous missense NOTCH2 mutation. European Journal of Clinical Nutrition. PMID 35043011 DOI: 10.1038/s41430-022-01072-y |
0.142 |
|
2018 |
Lang L, Hou Y, Chen Y, Tu G, Tao J, Yang D, Xi L, Fu L, Sun K, Yin J, Chen R, Peng M, Liu S, Liu M. ATM-Mediated Phosphorylation of Cortactin Involved in Actin Polymerization Promotes Breast Cancer Cells Migration and Invasion. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 51: 2972-2988. PMID 30562756 DOI: 10.1159/000496048 |
0.142 |
|
2014 |
Chen R, Jiang N, Jiang Q, Sun X, Wang Y, Zhang H, Hu Z. Exploring microRNA-like small RNAs in the filamentous fungus Fusarium oxysporum. Plos One. 9: e104956. PMID 25141304 DOI: 10.1371/journal.pone.0104956 |
0.142 |
|
2020 |
Tang F, Xiao Z, Sun F, Shen S, Chen S, Chen R, Zhu M, Zhang Q, Du H, Lu K, Li J, Qu C. Genome-wide identification and comparative analysis of diacylglycerol kinase (DGK) gene family and their expression profiling in Brassica napus under abiotic stress. Bmc Plant Biology. 20: 473. PMID 33059598 DOI: 10.1186/s12870-020-02691-y |
0.141 |
|
2009 |
Zeng L, Chen R, Liang F, Tsuchiya H, Murai H, Nakahashi T, Iwai K, Takahashi T, Kanda T, Morimoto S. Silent information regulator, Sirtuin 1, and age-related diseases. Geriatrics & Gerontology International. 9: 7-15. PMID 19260974 DOI: 10.1111/j.1447-0594.2008.00504.x |
0.14 |
|
2015 |
Campbell EL, Hagen KD, Chen R, Risser DD, Ferreira DP, Meeks JC. Genetic analysis reveals the identity of the photoreceptor for phototaxis in hormogonium filaments of Nostoc punctiforme. Journal of Bacteriology. 197: 782-91. PMID 25488296 DOI: 10.1128/Jb.02374-14 |
0.14 |
|
2019 |
Zhang Y, Wu S, Zhou X, Huang F, Chen R, Wang Y, Wu J. Association between nucleotide excision repair gene polymorphism and colorectal cancer risk. Journal of Clinical Laboratory Analysis. e22956. PMID 31568607 DOI: 10.1002/jcla.22956 |
0.139 |
|
2011 |
Wang C, Ye M, Han G, Chen R, Zhang M, Jiang X, Cheng K, Wang F, Zou H. Enrichment of peptides containing consensus sequence by an enzymatic approach for targeted analysis of proteins. Proteomics. 11: 3578-81. PMID 21751367 DOI: 10.1002/pmic.201100041 |
0.139 |
|
2022 |
Chen R, Wang X, Fu J, Liang M, Xia T. High FLT3 expression indicates favorable prognosis and correlates with clinicopathological parameters and immune infiltration in breast cancer. Frontiers in Genetics. 13: 956869. PMID 36159964 DOI: 10.3389/fgene.2022.956869 |
0.139 |
|
2023 |
Zhang HM, Luo D, Chen R, Wang SH, Zhao YJ, Li JX, Zhou MF, Yu ZM, Zhang JL, Liang FX. Research progress on acupuncture treatment in central nervous system diseases based on NLRP3 inflammasome in animal models. Frontiers in Neuroscience. 17: 1118508. PMID 36925735 DOI: 10.3389/fnins.2023.1118508 |
0.138 |
|
2018 |
Qiu M, Xia W, Chen R, Wang S, Xu Y, Ma Z, Xu W, Zhang E, Wang J, Fang T, Hu J, Dong G, Yin R, Wang J, Xu L. The circular RNA circPRKCI promotes tumor growth in lung adenocarcinoma. Cancer Research. PMID 29588350 DOI: 10.1158/0008-5472.CAN-17-2808 |
0.138 |
|
2021 |
Li Y, Ma C, Li W, Yang Y, Li X, Liu J, Wang J, Li S, Liu Y, Li K, Li J, Huang D, Chen R, Lv L, Li M, et al. A missense variant in NDUFA6 confers schizophrenia risk by affecting YY1 binding and NAGA expression. Molecular Psychiatry. PMID 33931730 DOI: 10.1038/s41380-021-01125-x |
0.138 |
|
2022 |
Shen L, Tian F, Cheng Z, Zhao Q, Feng Q, Zhao Y, Han B, Fang Y, Lin Y, Chen R, Wang D, Sun W, Sun J, Zeng H, Yao N, et al. OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development. Plants (Basel, Switzerland). 11. PMID 36365352 DOI: 10.3390/plants11212899 |
0.138 |
|
2003 |
Foell D, Ichida F, Vogl T, Yu X, Chen R, Miyawaki T, Sorg C, Roth J. S100A12 (EN-RAGE) in monitoring Kawasaki disease. Lancet (London, England). 361: 1270-2. PMID 12699958 DOI: 10.1016/S0140-6736(03)12986-8 |
0.138 |
|
2021 |
Shi X, Huang X, Chen R, Li Y, Xu Y, Zhang W, Zhu Q, Zha X, Wang J. The transcribed ultraconserved element uc.51 promotes the proliferation and metastasis of breast cancer by stabilizing NONO. Clinical & Experimental Metastasis. PMID 34714466 DOI: 10.1007/s10585-021-10128-5 |
0.137 |
|
2015 |
Yan J, Kim S, Nho K, Chen R, Risacher SL, Moore JH, Saykin AJ, Shen L. Hippocampal transcriptome-guided genetic analysis of correlated episodic memory phenotypes in Alzheimer's disease. Frontiers in Genetics. 6: 117. PMID 25859259 DOI: 10.3389/Fgene.2015.00117 |
0.137 |
|
2010 |
Dong H, Luo L, Hong S, Siu H, Xiao Y, Jin L, Chen R, Xiong M. Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma. Bmc Systems Biology. 4: 163. PMID 21114830 DOI: 10.1186/1752-0509-4-163 |
0.137 |
|
2013 |
Luo JH, Ding Y, Chen R, Michalopoulos G, Nelson J, Tseng G, Yu YP. Genome-wide methylation analysis of prostate tissues reveals global methylation patterns of prostate cancer. The American Journal of Pathology. 182: 2028-36. PMID 23583283 DOI: 10.1016/J.Ajpath.2013.02.040 |
0.137 |
|
2023 |
Chen R, Cui Y, Mak JCW. Novel treatments against airway inflammation in COPD based on drug repurposing. Advances in Pharmacology (San Diego, Calif.). 98: 225-247. PMID 37524488 DOI: 10.1016/bs.apha.2023.04.005 |
0.137 |
|
2023 |
Wang J, Yu X, Cao X, Tan L, Jia B, Chen R, Li J. GAPDH: A common housekeeping gene with an oncogenic role in pan-cancer. Computational and Structural Biotechnology Journal. 21: 4056-4069. PMID 37664172 DOI: 10.1016/j.csbj.2023.07.034 |
0.137 |
|
2021 |
Chen R, Hou Y, Connell M, Zhu S. Homeodomain protein Six4 prevents the generation of supernumerary Drosophila type II neuroblasts and premature differentiation of intermediate neural progenitors. Plos Genetics. 17: e1009371. PMID 33556050 DOI: 10.1371/journal.pgen.1009371 |
0.136 |
|
2013 |
Zhu J, Wang F, Cheng K, Dong J, Sun D, Chen R, Wang L, Ye M, Zou H. A simple integrated system for rapid analysis of sialic‐acid‐containing N‐glycopeptides from human serum Proteomics. 13: 1306-1313. PMID 23335361 DOI: 10.1002/Pmic.201200367 |
0.136 |
|
2014 |
Lyu K, Zhu X, Chen R, Chen Y, Yang Z. Molecular cloning of manganese superoxide dismutase gene in the cladoceran Daphnia magna: effects of microcystin, nitrite, and cadmium on gene expression profiles. Aquatic Toxicology (Amsterdam, Netherlands). 148: 55-64. PMID 24463312 DOI: 10.1016/j.aquatox.2013.12.031 |
0.136 |
|
2022 |
Li Y, Chen R, Yuan M, Wang D, Fu C, Chen R, Lei C, Zhou Q. One-stop molecular classification of endometrial carcinoma using comprehensive next-generation sequencing. International Journal of Cancer. PMID 36036365 DOI: 10.1002/ijc.34241 |
0.135 |
|
2020 |
Chen R, Zhao WQ, Fang C, Yang X, Ji M. Histone methyltransferase SETD2: a potential tumor suppressor in solid cancers. Journal of Cancer. 11: 3349-3356. PMID 32231741 DOI: 10.7150/jca.38391 |
0.135 |
|
2018 |
Ma S, Meng Z, Chen R, Guan KL. The Hippo Pathway: Biology and Pathophysiology. Annual Review of Biochemistry. PMID 30566373 DOI: 10.1146/Annurev-Biochem-013118-111829 |
0.135 |
|
2020 |
Lu X, Fu H, Chen R, Wang Y, Zhan Y, Song G, Hu T, Xia C, Tian X, Zhang B. Phosphoinositide specific phospholipase Cγ1 inhibition-driven autophagy caused cell death in human lung adenocarcinoma A549 cells and . International Journal of Biological Sciences. 16: 1427-1440. PMID 32210730 DOI: 10.7150/ijbs.42962 |
0.135 |
|
2017 |
Ren F, Yu S, Chen R, Lv X, Pan C. Identification of a novel 12-bp insertion/deletion (indel) of iPS-related Oct4 gene and its association with reproductive traits in male piglets. Animal Reproduction Science. PMID 28139300 DOI: 10.1016/j.anireprosci.2017.01.009 |
0.135 |
|
2011 |
Chen R, Brady E, McIntyre TM. Human TMEM30a promotes uptake of antitumor and bioactive choline phospholipids into mammalian cells. Journal of Immunology (Baltimore, Md. : 1950). 186: 3215-25. PMID 21289302 DOI: 10.4049/Jimmunol.1002710 |
0.135 |
|
2022 |
Chen R, Skutella T. Synergistic Anti-Ageing through Senescent Cells Specific Reprogramming. Cells. 11. PMID 35269453 DOI: 10.3390/cells11050830 |
0.134 |
|
2018 |
Xin G, Chen R, Zhang X. Identification of key microRNAs, transcription factors and genes associated with congenital obstructive nephropathy in a mouse model of megabladder. Gene. PMID 29410288 DOI: 10.1016/j.gene.2018.01.063 |
0.134 |
|
2010 |
Chang B, Momoi N, Shan L, Mitomo M, Aoyagi Y, Endo K, Takeda I, Chen R, Xing Y, Yu X, Watanabe S, Yoshida T, Kanegane H, Tsubata S, Bowles NE, et al. Gonadal mosaicism of a TAZ (G4.5) mutation in a Japanese family with Barth syndrome and left ventricular noncompaction. Molecular Genetics and Metabolism. 100: 198-203. PMID 20303308 DOI: 10.1016/j.ymgme.2010.02.021 |
0.134 |
|
2020 |
Chen R, Li D, Zheng M, Chen B, Wei T, Wang Y, Li M, Huang W, Tong Q, Wang Q, Zhu Y, Fang W, Guo L, Fang S. FGFRL1 affects chemoresistance of small-cell lung cancer by modulating the PI3K/Akt pathway via ENO1. Journal of Cellular and Molecular Medicine. PMID 31957179 DOI: 10.1111/jcmm.14763 |
0.134 |
|
2022 |
Li S, Xiao D, Zhao Y, Zhang L, Chen R, Liu W, Wen Y, Liao Y, Wen Y, Wu R, Han X, Zhao Q, Du S, Yan Q, Wen X, et al. Porcine Deltacoronavirus (PDCoV) Entry into PK-15 Cells by Caveolae-Mediated Endocytosis. Viruses. 14. PMID 35336903 DOI: 10.3390/v14030496 |
0.134 |
|
2015 |
Cuskin F, Lowe EC, Temple MJ, Zhu Y, Cameron EA, Pudlo NA, Porter NT, Urs K, Thompson AJ, Cartmell A, Rogowski A, Hamilton BS, Chen R, Tolbert TJ, Piens K, et al. Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism. Nature. 517: 165-9. PMID 25567280 DOI: 10.1038/Nature13995 |
0.134 |
|
2014 |
Chen R, Peng Y, Choi B, Xu J, Hu H. A private DNA motif finding algorithm. Journal of Biomedical Informatics. 50: 122-32. PMID 24412700 DOI: 10.1016/J.Jbi.2013.12.016 |
0.134 |
|
2018 |
Chen R, Xia W, Wang X, Qiu M, Yin R, Wang S, Xi X, Wang J, Xu Y, Dong G, Xu L, De W. Upregulated long non-coding RNA SBF2-AS1 promotes proliferation in esophageal squamous cell carcinoma. Oncology Letters. 15: 5071-5080. PMID 29552140 DOI: 10.3892/ol.2018.7968 |
0.133 |
|
2020 |
Chen R, Jing J, Siwko S, Huang Y, Zhou Y. Intelligent cell-based therapies for cancer and autoimmune disorders. Current Opinion in Biotechnology. 66: 207-216. PMID 32956902 DOI: 10.1016/J.Copbio.2020.08.012 |
0.133 |
|
2019 |
Chen R, Kou Z, Xu L, Cao J, Liu Z, Wen X, Wang Z, Wen H. Analysis of epidemiological characteristics of four natural-focal diseases in Shandong Province, China in 2009-2017: A descriptive analysis. Plos One. 14: e0221677. PMID 31454372 DOI: 10.1371/journal.pone.0221677 |
0.133 |
|
2022 |
Wang J, Liu J, Li S, Li X, Yang J, Dang X, Mu C, Li Y, Li K, Li J, Chen R, Liu Y, Huang D, Zhang Z, Luo XJ. Genetic regulatory and biological implications of the 10q24.32 schizophrenia risk locus. Brain : a Journal of Neurology. PMID 36152315 DOI: 10.1093/brain/awac352 |
0.133 |
|
2024 |
Wan J, Ding J, Zhang X, Hu X, Chen R, Han S. Exploration of the Amino Acid Metabolic Profiling and Pathway in Infected Rats Revealed by the Targeted Metabolomic Analysis. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 38574253 DOI: 10.1089/vbz.2023.0059 |
0.133 |
|
2023 |
Gan Q, Huang X, Zhao W, Liu H, Xu Y, Zhang X, Cheng J, Chen R. AC010883.5 promotes cell proliferation, invasion, migration, and epithelial-to-mesenchymal transition in cervical cancer by modulating the MAPK signaling pathway. Bmc Cancer. 23: 364. PMID 37081411 DOI: 10.1186/s12885-023-10825-2 |
0.132 |
|
2022 |
Li Y, Ma C, Li S, Wang J, Li W, Yang Y, Li X, Liu J, Yang J, Liu Y, Li K, Li J, Huang D, Chen R, Lv L, et al. Regulatory Variant rs2535629 in ITIH3 Intron Confers Schizophrenia Risk By Regulating CTCF Binding and SFMBT1 Expression. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2104786. PMID 34978167 DOI: 10.1002/advs.202104786 |
0.132 |
|
2022 |
Yuan LX, Yang B, Fung TS, Chen RA, Liu DX. Transcriptomic analysis reveals crucial regulatory roles of immediate-early response genes and related signaling pathways in coronavirus infectious bronchitis virus infection. Virology. 575: 1-9. PMID 35987078 DOI: 10.1016/j.virol.2022.08.001 |
0.132 |
|
2022 |
Liang J, Chen R, Zhang F, Wang Q, Yang Y, Lv M, Yan S, Gao S. Full-length chloroplast genome of Dongxiang wild rice reveals small single-copy region switching. Frontiers in Plant Science. 13: 929352. PMID 36247578 DOI: 10.3389/fpls.2022.929352 |
0.132 |
|
2009 |
Xia H, Lu BR, Su J, Chen R, Rong J, Song Z, Wang F. Normal expression of insect-resistant transgene in progeny of common wild rice crossed with genetically modified rice: its implication in ecological biosafety assessment. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 119: 635-44. PMID 19504082 DOI: 10.1007/S00122-009-1075-5 |
0.132 |
|
Hide low-probability matches. |