| Year |
Citation |
Score |
| 2024 |
Barquera R, Del Castillo-Chávez O, Nägele K, Pérez-Ramallo P, Hernández-Zaragoza DI, Szolek A, Rohrlach AB, Librado P, Childebayeva A, Bianco RA, Penman BS, Acuña-Alonzo V, Lucas M, Lara-Riegos JC, Moo-Mezeta ME, et al. Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature. PMID 38867041 DOI: 10.1038/s41586-024-07509-7 |
0.309 |
|
| 2023 |
Jamieson A, Carmagnini A, Howard-McCombe J, Doherty S, Hirons A, Dimopoulos E, Lin AT, Allen R, Anderson-Whymark H, Barnett R, Batey C, Beglane F, Bowden W, Bratten J, De Cupere B, ... ... Librado P, et al. Limited historical admixture between European wildcats and domestic cats. Current Biology : Cb. 33: 4751-4760.e14. PMID 37935117 DOI: 10.1016/j.cub.2023.08.031 |
0.409 |
|
| 2022 |
Librado P, Rozas J. Reconstructing Gene Gains and Losses with BadiRate. Methods in Molecular Biology (Clifton, N.J.). 2569: 213-232. PMID 36083450 DOI: 10.1007/978-1-0716-2691-7_10 |
0.659 |
|
| 2022 |
Todd ET, Tonasso-Calvière L, Chauvey L, Schiavinato S, Fages A, Seguin-Orlando A, Clavel P, Khan N, Pérez Pardal L, Patterson Rosa L, Librado P, Ringbauer H, Verdugo M, Southon J, Aury JM, et al. The genomic history and global expansion of domestic donkeys. Science (New York, N.Y.). 377: 1172-1180. PMID 36074859 DOI: 10.1126/science.abo3503 |
0.354 |
|
| 2020 |
Librado P, Orlando L. Genomics and the Evolutionary History of Equids. Annual Review of Animal Biosciences. PMID 33197207 DOI: 10.1146/annurev-animal-061220-023118 |
0.343 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, ... ... Librado P, et al. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 123. PMID 32917281 DOI: 10.1186/s12915-020-00864-7 |
0.734 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, ... ... Librado P, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 90. PMID 32698880 DOI: 10.1186/S12915-020-00820-5 |
0.737 |
|
| 2020 |
Clifton B, Jimenez J, Kimura A, Chahine Z, Librado P, Sanchez-Gracia A, Abbassi M, Carranza F, Chan C, Marchetti M, Zhang W, Shi M, Vu C, Yeh S, Fanti L, et al. Understanding the early evolutionary stages of a tandem D. melanogaster-specific gene family: a structural and functional population study. Molecular Biology and Evolution. PMID 32359138 DOI: 10.1093/Molbev/Msaa109 |
0.792 |
|
| 2019 |
Orlando L, Librado P. Origin and Evolution of Deleterious Mutations in Horses. Genes. 10. PMID 31466279 DOI: 10.3390/genes10090649 |
0.329 |
|
| 2019 |
Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, ... ... Librado P, et al. The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31387975 DOI: 10.1073/Pnas.1822129116 |
0.812 |
|
| 2019 |
Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, ... ... Librado P, et al. Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series. Cell. PMID 31056281 DOI: 10.1016/J.Cell.2019.03.049 |
0.511 |
|
| 2018 |
Puerma E, Orengo DJ, Cruz F, Gómez-Garrido J, Librado P, Salguero D, Papaceit M, Gut M, Segarra C, Alioto TS, Aguadé M. The high-quality genome sequence of the oceanic island endemic species Drosophila guanche reveals signals of adaptive evolution in genes related to flight and genome stability. Genome Biology and Evolution. PMID 29947749 DOI: 10.1093/Gbe/Evy135 |
0.679 |
|
| 2018 |
Renaud G, Petersen B, Seguin-Orlando A, Bertelsen MF, Waller A, Newton R, Paillot R, Bryant N, Vaudin M, Librado P, Orlando L. Improved de novo genomic assembly for the domestic donkey. Science Advances. 4: eaaq0392. PMID 29740610 DOI: 10.1126/sciadv.aaq0392 |
0.396 |
|
| 2018 |
Librado P, Orlando L. Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD. Molecular Biology and Evolution. 35: 1520-1535. PMID 29617830 DOI: 10.1093/molbev/msy053 |
0.358 |
|
| 2018 |
Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, et al. Convergent genomic signatures of domestication in sheep and goats. Nature Communications. 9: 813. PMID 29511174 DOI: 10.1038/S41467-018-03206-Y |
0.485 |
|
| 2018 |
Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N, Schubert M, Seguin-Orlando A, Owens IJ, Felkel S, Bignon-Lau O, de Barros Damgaard P, Mittnik A, Mohaseb AF, Davoudi H, Alquraishi S, ... ... Librado P, et al. Ancient genomes revisit the ancestry of domestic and Przewalski's horses. Science (New York, N.Y.). PMID 29472442 DOI: 10.1126/Science.Aao3297 |
0.386 |
|
| 2017 |
Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution. PMID 29029172 DOI: 10.1093/Molbev/Msx248 |
0.744 |
|
| 2017 |
Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, et al. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology & Evolution. 1: 59. PMID 28812732 DOI: 10.1038/S41559-016-0059 |
0.779 |
|
| 2017 |
Librado P, Gamba C, Gaunitz C, Der Sarkissian C, Pruvost M, Albrechtsen A, Fages A, Khan N, Schubert M, Jagannathan V, Serres-Armero A, Kuderna LFK, Povolotskaya IS, Seguin-Orlando A, Lepetz S, et al. Ancient genomic changes associated with domestication of the horse. Science (New York, N.Y.). 356: 442-445. PMID 28450643 DOI: 10.1126/Science.Aam5298 |
0.337 |
|
| 2017 |
Leonardi M, Librado P, Der Sarkissian C, Schubert M, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Gamba C, Willerslev E, Orlando L. Evolutionary Patterns and Processes: Lessons from Ancient DNA. Systematic Biology. 66: e1-e29. PMID 28173586 DOI: 10.1093/Sysbio/Syw059 |
0.379 |
|
| 2016 |
Librado P, Fages A, Gaunitz C, Leonardi M, Wagner S, Khan N, Hanghøj K, Alquraishi SA, Alfarhan AH, Al-Rasheid KA, Der Sarkissian C, Schubert M, Orlando L. The Evolutionary Origin and Genetic Makeup of Domestic Horses. Genetics. 204: 423-434. PMID 27729493 DOI: 10.1534/Genetics.116.194860 |
0.402 |
|
| 2016 |
Clifton BD, Librado P, Yeh SD, Solares E, Real D, Jayasekera S, Zhang W, Shi M, Park R, Magie R, Ma HC, Xia XQ, Marco A, Rozas J, Ranz JM. Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila. Molecular Biology and Evolution. PMID 27702774 DOI: 10.1093/Molbev/Msw212 |
0.703 |
|
| 2016 |
Cruz-Dávalos DI, Llamas B, Gaunitz C, Fages A, Gamba C, Soubrier J, Librado P, Seguin-Orlando A, Pruvost M, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Scheu A, Beneke N, Ludwig A, et al. Experimental conditions improving in solution target enrichment for ancient DNA. Molecular Ecology Resources. PMID 27566552 DOI: 10.1111/1755-0998.12595 |
0.407 |
|
| 2016 |
Librado P, Rozas J. Weak polygenic selection drives the rapid adaptation of the chemosensory system: lessons from the upstream regions of the major gene families. Genome Biology and Evolution. PMID 27503297 DOI: 10.1093/Gbe/Evw191 |
0.704 |
|
| 2015 |
Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, et al. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598656 DOI: 10.1073/Pnas.1513696112 |
0.477 |
|
| 2015 |
Calvo-Martín JM, Librado P, Aguadé M, Papaceit M, Segarra C. Adaptive selection and coevolution at the proteins of the Polycomb repressive complexes in Drosophila. Heredity. PMID 26486609 DOI: 10.1038/Hdy.2015.91 |
0.626 |
|
| 2015 |
Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, et al. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Current Biology : Cb. PMID 26412128 DOI: 10.1016/J.Cub.2015.08.032 |
0.725 |
|
| 2015 |
Blanco I, Kuchenbaecker K, Cuadras D, Wang X, Barrowdale D, de Garibay GR, Librado P, Sánchez-Gracia A, Rozas J, Bonifaci N, McGuffog L, Pankratz VS, Islam A, Mateo F, Berenguer A, et al. Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers. Plos One. 10: e0120020. PMID 25830658 DOI: 10.1371/Journal.Pone.0120020 |
0.704 |
|
| 2015 |
Carretero-Paulet L, Librado P, Chang TH, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba. Molecular Biology and Evolution. 32: 1284-95. PMID 25637935 DOI: 10.1093/Molbev/Msv020 |
0.711 |
|
| 2015 |
Romero-Hernández B, Tedim AP, Sánchez-Herrero JF, Librado P, Rozas J, Muñoz G, Baquero F, Cantón R, Del Campo R. Streptococcus gallolyticus subsp. gallolyticus from human and animal origins: genetic diversity, antimicrobial susceptibility, and characterization of a vancomycin-resistant calf isolate carrying a vanA-Tn1546-like element. Antimicrobial Agents and Chemotherapy. 59: 2006-15. PMID 25605355 DOI: 10.1128/Aac.04083-14 |
0.784 |
|
| 2015 |
Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba. Genome Biology and Evolution. 7: 444-56. PMID 25577200 DOI: 10.1093/Gbe/Evu288 |
0.723 |
|
| 2014 |
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Librado P, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274 |
0.721 |
|
| 2014 |
Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117 |
0.778 |
|
| 2013 |
Librado P, Rozas J. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Genome Biology and Evolution. 5: 2096-108. PMID 24148943 DOI: 10.1093/Gbe/Evt158 |
0.629 |
|
| 2012 |
Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, ... ... Librado P, et al. The Drosophila melanogaster Genetic Reference Panel. Nature. 482: 173-8. PMID 22318601 DOI: 10.1038/Nature10811 |
0.677 |
|
| 2012 |
Yeh SD, Do T, Chan C, Cordova A, Carranza F, Yamamoto EA, Abbassi M, Gandasetiawan KA, Librado P, Damia E, Dimitri P, Rozas J, Hartl DL, Roote J, Ranz JM. Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. Proceedings of the National Academy of Sciences of the United States of America. 109: 2043-8. PMID 22308475 DOI: 10.1073/Pnas.1121327109 |
0.628 |
|
| 2012 |
Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. PopDrowser: the Population Drosophila Browser. Bioinformatics (Oxford, England). 28: 595-6. PMID 22180410 DOI: 10.1093/Bioinformatics/Btr691 |
0.712 |
|
| 2012 |
Librado P, Vieira FG, Rozas J. BadiRate: estimating family turnover rates by likelihood-based methods. Bioinformatics (Oxford, England). 28: 279-81. PMID 22080468 DOI: 10.1093/Bioinformatics/Btr623 |
0.755 |
|
| 2010 |
Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. The Drosophila genome variation browser F1000research. 1. DOI: 10.7490/F1000Research.279.1 |
0.699 |
|
| 2009 |
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (Oxford, England). 25: 1451-2. PMID 19346325 DOI: 10.1093/Bioinformatics/Btp187 |
0.609 |
|
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