Harmit Singh Malik - Publications

Affiliations: 
Fred Hutchinson Cancer Research Center, Seattle, WA, United States 
Area:
evolution, chromatin

133 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chew GL, Bleakley M, Bradley RK, Malik HS, Henikoff S, Molaro A, Sarthy J. Short H2A histone variants are expressed in cancer. Nature Communications. 12: 490. PMID 33473122 DOI: 10.1038/s41467-020-20707-x  1
2020 Kato K, Ahmad S, Zhu Z, Young JM, Mu X, Park S, Malik HS, Hur S. Structural analysis of RIG-I-like receptors reveals ancient rules of engagement between diverse RNA helicases and TRIM ubiquitin ligases. Molecular Cell. PMID 33373584 DOI: 10.1016/j.molcel.2020.11.047  0.48
2020 Molaro A, Wood AJ, Janssens D, Kindelay SM, Eickbush MT, Wu S, Singh P, Muller CH, Henikoff S, Malik HS. Biparental contributions of the H2A.B histone variant control embryonic development in mice. Plos Biology. 18: e3001001. PMID 33362208 DOI: 10.1371/journal.pbio.3001001  1
2020 Kasinathan B, Colmenares SU, McConnell H, Young JM, Karpen GH, Malik HS. Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in . Elife. 9. PMID 33169670 DOI: 10.7554/eLife.63368  0.52
2020 Hays M, Young JM, Levan PF, Malik HS. A natural variant of the essential host gene restricts the parasitic 2-micron plasmid in . Elife. 9. PMID 33063663 DOI: 10.7554/eLife.62337  0.48
2020 Tenthorey JL, Young C, Sodeinde A, Emerman M, Malik HS. Mutational resilience of antiviral restriction favors primate TRIM5α in host-virus evolutionary arms races. Elife. 9. PMID 32930662 DOI: 10.7554/eLife.59988  1
2020 Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, O'Meara MJ, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, ... ... Malik HS, et al. A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. Biorxiv : the Preprint Server For Biology. PMID 32511329 DOI: 10.1101/2020.03.22.002386  1
2020 Yang L, Emerman M, Malik HS, McLaughlin RN. Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates. Elife. 9. PMID 32479260 DOI: 10.7554/eLife.58436  1
2020 Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, White KM, O'Meara MJ, Rezelj VV, Guo JZ, Swaney DL, Tummino TA, Huettenhain R, Kaake RM, Richards AL, Tutuncuoglu B, ... ... Malik HS, et al. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature. PMID 32353859 DOI: 10.1038/s41586-020-2286-9  1
2020 Kursel LE, Welsh FC, Malik HS. Ancient co-retention of paralogs of Cid centromeric histones and Cal1 chaperones in mosquito species. Molecular Biology and Evolution. PMID 32125433 DOI: 10.1093/molbev/msaa056  0.92
2020 Molaro A, Malik HS, Bourc'his D. Dynamic evolution of de novo DNA methyltransferases in rodent and primate genomes. Molecular Biology and Evolution. PMID 32077945 DOI: 10.1093/molbev/msaa044  0.32
2019 Lamelza P, Young JM, Noble LM, Caro L, Isakharov A, Palanisamy M, Rockman MV, Malik HS, Ailion M. Hybridization promotes asexual reproduction in Caenorhabditis nematodes. Plos Genetics. 15: e1008520. PMID 31841515 DOI: 10.1371/journal.pgen.1008520  0.48
2019 Colón-Thillet R, Hsieh E, Graf L, McLaughlin RN, Young JM, Kochs G, Emerman M, Malik HS. Combinatorial mutagenesis of rapidly evolving residues yields super-restrictor antiviral proteins. Plos Biology. 17: e3000181. PMID 31574080 DOI: 10.1371/journal.pbio.3000181  1
2019 Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, ... ... Malik HS, et al. EvoChromo: towards a synthesis of chromatin biology and evolution. Development (Cambridge, England). 146. PMID 31558570 DOI: 10.1242/dev.178962  1
2018 Molaro A, Young JM, Malik HS. Evolutionary origins and diversification of testis-specific short histone H2A variants in mammals. Genome Research. PMID 29549088 DOI: 10.1101/gr.229799.117  0.48
2018 Kursel LE, Malik HS. The cellular mechanisms and consequences of centromere drive. Current Opinion in Cell Biology. 52: 58-65. PMID 29454259 DOI: 10.1016/j.ceb.2018.01.011  0.92
2017 Molaro A, Malik HS. Culture shock. Elife. 6. PMID 29251593 DOI: 10.7554/eLife.33312  0.32
2017 Kasinathan B, Ahmad K, Malik HS. Waddington Redux: De Novo Mutations Underlie the Genetic Assimilation of Stress-Induced Phenocopies in Drosophila melanogaster. Genetics. 207: 49-51. PMID 28874454 DOI: 10.1534/genetics.117.205039  1
2017 Nuckolls NL, Bravo Núñez MA, Eickbush MT, Young JM, Lange JJ, Yu JS, Smith GR, Jaspersen SL, Malik HS, Zanders SE. genes are prolific dual poison-antidote meiotic drivers. Elife. 6. PMID 28631612 DOI: 10.7554/eLife.26033  1
2017 Franks TM, Benner C, Narvaiza I, Marchetto MCN, Young JM, Malik HS, Gage FH, Hetzer MW. Corrigendum: Evolution of a transcriptional regulator from a transmembrane nucleoporin. Genes & Development. 31: 845. PMID 28512238 DOI: 10.1101/gad.300699.117  0.48
2017 Kursel LE, Malik HS. Recurrent gene duplication leads to diverse repertoires of centromeric histones in Drosophila species. Molecular Biology and Evolution. PMID 28333217 DOI: 10.1093/molbev/msx091  0.92
2017 McLaughlin RN, Malik HS. Genetic conflicts: the usual suspects and beyond. The Journal of Experimental Biology. 220: 6-17. PMID 28057823 DOI: 10.1242/jeb.148148  1
2016 Cheng CY, Young JM, Lin CG, Chao JL, Malik HS, Yao MC. The piggyBac transposon-derived genes TPB1 and TPB6 mediate essential transposon-like excision during the developmental rearrangement of key genes in Tetrahymena thermophila. Genes & Development. 30: 2724-2736. PMID 28087716 DOI: 10.1101/gad.290460.116  0.56
2016 Patel MR, Miriyala GK, Littleton AJ, Yang H, Trinh K, Young JM, Kennedy SR, Yamashita YM, Pallanck LJ, Malik HS. A mitochondrial DNA hypomorph of cytochrome oxidase specifically impairs male fertility in Drosophila melanogaster. Elife. 5. PMID 27481326 DOI: 10.7554/eLife.16923  1
2016 Kursel LE, Malik HS. Centromeres. Current Biology : Cb. 26: R487-R490. PMID 27326706 DOI: 10.1016/j.cub.2016.05.031  0.92
2016 Daugherty MD, Schaller AM, Geballe AP, Malik HS. Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals. Elife. 5. PMID 27240734 DOI: 10.7554/eLife.14228  1
2016 Franks TM, Benner C, Narvaiza I, Marchetto MC, Young JM, Malik HS, Gage FH, Hetzer MW. Evolution of a transcriptional regulator from a transmembrane nucleoporin. Genes & Development. PMID 27198230 DOI: 10.1101/gad.280941.116  0.48
2016 McLaughlin RN, Gable JT, Wittkopp CJ, Emerman M, Malik HS. Conservation and Innovation of APOBEC3A Restriction Functions during Primate Evolution. Molecular Biology and Evolution. PMID 27189538 DOI: 10.1093/molbev/msw070  1
2016 Levine MT, Vander Wende HM, Hsieh E, Baker EP, Malik HS. Recurrent gene duplication diversifies genome defense repertoire in Drosophila. Molecular Biology and Evolution. PMID 26979388 DOI: 10.1093/molbev/msw053  1
2016 Drinnenberg IA, Henikoff S, Malik HS. Evolutionary Turnover of Kinetochore Proteins: A Ship of Theseus? Trends in Cell Biology. PMID 26877204 DOI: 10.1016/j.tcb.2016.01.005  1
2016 Molaro A, Malik HS. Hide and seek: how chromatin-based pathways silence retroelements in the mammalian germline. Current Opinion in Genetics & Development. 37: 51-58. PMID 26821364 DOI: 10.1016/j.gde.2015.12.001  1
2015 Phadnis N, Baker EP, Cooper JC, Frizzell KA, Hsieh E, de la Cruz AF, Shendure J, Kitzman JO, Malik HS. An essential cell cycle regulation gene causes hybrid inviability in Drosophila. Science (New York, N.Y.). 350: 1552-5. PMID 26680200 DOI: 10.1126/science.aac7504  1
2015 Mitchell PS, Young JM, Emerman M, Malik HS. Evolutionary Analyses Suggest a Function of MxB Immunity Proteins Beyond Lentivirus Restriction. Plos Pathogens. 11: e1005304. PMID 26658285 DOI: 10.1371/journal.ppat.1005304  1
2015 Zanders SE, Malik HS. Chromosome segregation: human female meiosis breaks all the rules. Current Biology : Cb. 25: R654-6. PMID 26241139 DOI: 10.1016/j.cub.2015.06.054  1
2015 McLaughlin RN, Malik HS. LINE-1 Retroelements Get ZAPped! Plos Genetics. 11: e1005364. PMID 26182081 DOI: 10.1371/journal.pgen.1005364  1
2015 Levine MT, Vander Wende HM, Malik HS. Mitotic fidelity requires transgenerational action of a testis-restricted HP1. Elife. 4. PMID 26151671 DOI: 10.7554/eLife.07378  1
2015 Zanders SE, Malik HS. R2d2 and Hyperdrive Mechanisms (in Mouse Meiosis). Plos Genetics. 11: e1004950. PMID 25680097 DOI: 10.1371/journal.pgen.1004950  1
2015 Chou S, Daugherty MD, Peterson SB, Biboy J, Yang Y, Jutras BL, Fritz-Laylin LK, Ferrin MA, Harding BN, Jacobs-Wagner C, Yang XF, Vollmer W, Malik HS, Mougous JD. Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature. 518: 98-101. PMID 25470067 DOI: 10.1038/nature13965  0.84
2015 McLaughlin RN, Malik HS. LINE-1 Retroelements Get ZAPped! Plos Genetics. 11. DOI: 10.1371/journal.pgen.1005364  1
2015 Zanders SE, Malik HS. Chromosome Segregation: Human Female Meiosis Breaks All the Rules Current Biology. 25: R654-R656. DOI: 10.1016/j.cub.2015.06.054  1
2014 Phadnis N, Malik HS. Speciation via autoimmunity: a dangerous mix. Cell. 159: 1247-9. PMID 25480288 DOI: 10.1016/j.cell.2014.11.028  1
2014 Lynch M, Field MC, Goodson HV, Malik HS, Pereira-Leal JB, Roos DS, Turkewitz AP, Sazer S. Evolutionary cell biology: two origins, one objective. Proceedings of the National Academy of Sciences of the United States of America. 111: 16990-4. PMID 25404324 DOI: 10.1073/pnas.1415861111  1
2014 Ross BD, Malik HS. Genetic conflicts: stronger centromeres win tug-of-war in female meiosis. Current Biology : Cb. 24: R966-8. PMID 25291640 DOI: 10.1016/j.cub.2014.08.053  1
2014 Drinnenberg IA, deYoung D, Henikoff S, Malik HS. Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects. Elife. 3. PMID 25247700 DOI: 10.7554/eLife.03676  1
2014 McLaughlin RN, Young JM, Yang L, Neme R, Wichman HA, Malik HS. Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency. Plos Genetics. 10: e1004531. PMID 25211013 DOI: 10.1371/journal.pgen.1004531  1
2014 Daugherty MD, Malik HS. How a virus blocks a cellular emergency access lane to the nucleus, STAT! Cell Host & Microbe. 16: 150-2. PMID 25121743 DOI: 10.1016/j.chom.2014.07.013  1
2014 Zanders SE, Eickbush MT, Yu JS, Kang JW, Fowler KR, Smith GR, Malik HS. Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast. Elife. 3: e02630. PMID 24963140 DOI: 10.7554/eLife.02630  1
2014 Belfort M, Marraffini L, Macfarlan T, Boeke J, Slotkin K, Malik H, Maquat L. Mobile DNA: an evolving field. Mobile Dna. 5: 16. PMID 24904692 DOI: 10.1186/1759-8753-5-16  1
2014 Daugherty MD, Young JM, Kerns JA, Malik HS. Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts. Plos Genetics. 10: e1004403. PMID 24875882 DOI: 10.1371/journal.pgen.1004403  1
2014 Tenthorey JL, Kofoed EM, Daugherty MD, Malik HS, Vance RE. Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes. Molecular Cell. 54: 17-29. PMID 24657167 DOI: 10.1016/j.molcel.2014.02.018  0.56
2014 Singh PK, Bourque G, Craig NL, Dubnau JT, Feschotte C, Flasch DA, Gunderson KL, Malik HS, Moran JV, Peters JE, Slotkin RK, Levin HL. Mobile genetic elements and genome evolution 2014 Mobile Dna. 5. DOI: 10.1186/1759-8753-5-26  1
2013 Malfavon-Borja R, Sawyer SL, Wu LI, Emerman M, Malik HS. An evolutionary screen highlights canonical and noncanonical candidate antiviral genes within the primate TRIM gene family. Genome Biology and Evolution. 5: 2141-54. PMID 24158625 DOI: 10.1093/gbe/evt163  1
2013 Compton AA, Malik HS, Emerman M. Host gene evolution traces the evolutionary history of ancient primate lentiviruses. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120496. PMID 23938749 DOI: 10.1098/rstb.2012.0496  1
2013 Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, Roman A, Malik HS, Galloway DA. Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proceedings of the National Academy of Sciences of the United States of America. 110: 12744-9. PMID 23847207 DOI: 10.1073/pnas.1303526110  1
2013 Ross BD, Rosin L, Thomae AW, Hiatt MA, Vermaak D, de la Cruz AF, Imhof A, Mellone BG, Malik HS. Stepwise evolution of essential centromere function in a Drosophila neogene. Science (New York, N.Y.). 340: 1211-4. PMID 23744945 DOI: 10.1126/science.1234393  1
2013 Mitchell PS, Emerman M, Malik HS. An evolutionary perspective on the broad antiviral specificity of MxA. Current Opinion in Microbiology. 16: 493-9. PMID 23725670 DOI: 10.1016/j.mib.2013.04.005  1
2013 Levine MT, Malik HS. A rapidly evolving genomic toolkit for Drosophila heterochromatin. Fly. 7: 137-41. PMID 23519206 DOI: 10.4161/fly.24335  1
2013 Malfavon-Borja R, Wu LI, Emerman M, Malik HS. Birth, decay, and reconstruction of an ancient TRIMCyp gene fusion in primate genomes. Proceedings of the National Academy of Sciences of the United States of America. 110: E583-92. PMID 23319649 DOI: 10.1073/pnas.1216542110  1
2013 Phadnis N, Malik HS. The molecular and evolutionary basis of hybrid sterility: From Odysseus to Overdrive Speciation: Natural Processes, Genetics and Biodiversity. 207-225.  1
2012 Daugherty MD, Malik HS. Rules of engagement: molecular insights from host-virus arms races. Annual Review of Genetics. 46: 677-700. PMID 23145935 DOI: 10.1146/annurev-genet-110711-155522  1
2012 Mitchell PS, Patzina C, Emerman M, Haller O, Malik HS, Kochs G. Evolution-guided identification of antiviral specificity determinants in the broadly acting interferon-induced innate immunity factor MxA. Cell Host & Microbe. 12: 598-604. PMID 23084925 DOI: 10.1016/j.chom.2012.09.005  1
2012 Brunette RL, Young JM, Whitley DG, Brodsky IE, Malik HS, Stetson DB. Extensive evolutionary and functional diversity among mammalian AIM2-like receptors. The Journal of Experimental Medicine. 209: 1969-83. PMID 23045604 DOI: 10.1084/jem.20121960  1
2012 Elde NC, Child SJ, Eickbush MT, Kitzman JO, Rogers KS, Shendure J, Geballe AP, Malik HS. Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses. Cell. 150: 831-41. PMID 22901812 DOI: 10.1016/j.cell.2012.05.049  1
2012 Levine MT, McCoy C, Vermaak D, Lee YC, Hiatt MA, Matsen FA, Malik HS. Phylogenomic analysis reveals dynamic evolutionary history of the Drosophila heterochromatin protein 1 (HP1) gene family. Plos Genetics. 8: e1002729. PMID 22737079 DOI: 10.1371/journal.pgen.1002729  1
2012 Lim ES, Wu LI, Malik HS, Emerman M. The function and evolution of the restriction factor Viperin in primates was not driven by lentiviruses. Retrovirology. 9: 55. PMID 22734835 DOI: 10.1186/1742-4690-9-55  1
2012 Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, ... ... Malik HS, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7  1
2012 Patel MR, Loo YM, Horner SM, Gale M, Malik HS. Convergent evolution of escape from hepaciviral antagonism in primates. Plos Biology. 10: e1001282. PMID 22427742 DOI: 10.1371/journal.pbio.1001282  1
2012 Malik HS. Retroviruses push the envelope for mammalian placentation. Proceedings of the National Academy of Sciences of the United States of America. 109: 2184-5. PMID 22308481 DOI: 10.1073/pnas.1121365109  1
2012 Lim ES, Fregoso OI, McCoy CO, Matsen FA, Malik HS, Emerman M. The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx. Cell Host & Microbe. 11: 194-204. PMID 22284954 DOI: 10.1016/j.chom.2012.01.004  1
2012 Phadnis N, Hsieh E, Malik HS. Birth, death, and replacement of karyopherins in Drosophila. Molecular Biology and Evolution. 29: 1429-40. PMID 22160828 DOI: 10.1093/molbev/msr306  1
2011 Levine MT, Malik HS. Learning to protect your genome on the fly. Cell. 147: 1440-1. PMID 22196722 DOI: 10.1016/j.cell.2011.12.001  1
2011 Patel MR, Emerman M, Malik HS. Paleovirology - ghosts and gifts of viruses past. Current Opinion in Virology. 1: 304-9. PMID 22003379 DOI: 10.1016/j.coviro.2011.06.007  1
2011 Duggal NK, Malik HS, Emerman M. The breadth of antiviral activity of Apobec3DE in chimpanzees has been driven by positive selection. Journal of Virology. 85: 11361-71. PMID 21835794 DOI: 10.1128/JVI.05046-11  1
2011 Elde NC, Roach KC, Yao MC, Malik HS. Absence of positive selection on centromeric histones in Tetrahymena suggests unsuppressed centromere: drive in lineages lacking male meiosis. Journal of Molecular Evolution. 72: 510-20. PMID 21643829 DOI: 10.1007/s00239-011-9449-0  1
2010 Koyanagi M, Kerns JA, Chung L, Zhang Y, Brown S, Moldoveanu T, Malik HS, Bix M. Diversifying selection and functional analysis of interleukin-4 suggests antagonism-driven evolution at receptor-binding interfaces. Bmc Evolutionary Biology. 10: 223. PMID 20649995 DOI: 10.1186/1471-2148-10-223  1
2010 Lim ES, Malik HS, Emerman M. Ancient adaptive evolution of tetherin shaped the functions of Vpu and Nef in human immunodeficiency virus and primate lentiviruses. Journal of Virology. 84: 7124-34. PMID 20444900 DOI: 10.1128/JVI.00468-10  1
2010 Emerman M, Malik HS. Paleovirology--modern consequences of ancient viruses. Plos Biology. 8: e1000301. PMID 20161719 DOI: 10.1371/journal.pbio.1000301  1
2009 Oliver PL, Goodstadt L, Bayes JJ, Birtle Z, Roach KC, Phadnis N, Beatson SA, Lunter G, Malik HS, Ponting CP. Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa. Plos Genetics. 5: e1000753. PMID 19997497 DOI: 10.1371/journal.pgen.1000753  1
2009 Moran JV, Malik HS. Diamonds and rust: how transposable elements influence mammalian genomes. Conference on Mobile Elements in Mammalian Genomes. Embo Reports. 10: 1306-10. PMID 19949412 DOI: 10.1038/embor.2009.248  1
2009 Bayes JJ, Malik HS. Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species. Science (New York, N.Y.). 326: 1538-41. PMID 19933102 DOI: 10.1126/science.1181756  1
2009 Vermaak D, Malik HS. Multiple roles for heterochromatin protein 1 genes in Drosophila. Annual Review of Genetics. 43: 467-92. PMID 19919324 DOI: 10.1146/annurev-genet-102108-134802  1
2009 Elde NC, Malik HS. The evolutionary conundrum of pathogen mimicry. Nature Reviews. Microbiology. 7: 787-97. PMID 19806153 DOI: 10.1038/nrmicro2222  1
2009 Malik HS, Henikoff S. Major evolutionary transitions in centromere complexity. Cell. 138: 1067-82. PMID 19766562 DOI: 10.1016/j.cell.2009.08.036  1
2009 Vermaak D, Bayes JJ, Malik HS. A surrogate approach to study the evolution of noncoding DNA elements that organize eukaryotic genomes. The Journal of Heredity. 100: 624-36. PMID 19635763 DOI: 10.1093/jhered/esp063  1
2009 Malik HS. The centromere-drive hypothesis: a simple basis for centromere complexity. Progress in Molecular and Subcellular Biology. 48: 33-52. PMID 19521811 DOI: 10.1007/978-3-642-00182-6_2  1
2009 Smith EE, Malik HS. The apolipoprotein L family of programmed cell death and immunity genes rapidly evolved in primates at discrete sites of host-pathogen interactions. Genome Research. 19: 850-8. PMID 19299565 DOI: 10.1101/gr.085647.108  1
2009 Tareen SU, Sawyer SL, Malik HS, Emerman M. An expanded clade of rodent Trim5 genes. Virology. 385: 473-83. PMID 19147168 DOI: 10.1016/j.virol.2008.12.018  1
2009 Elde NC, Child SJ, Geballe AP, Malik HS. Protein kinase R reveals an evolutionary model for defeating viral mimicry. Nature. 457: 485-9. PMID 19043403 DOI: 10.1038/nature07529  1
2009 LaRue RS, Andrésdóttir V, Blanchard Y, Conticello SG, Derse D, Emerman M, Greene WC, Jónsson SR, Landau NR, Löchelt M, Malik HS, Malim MH, Münk C, O'Brien SJ, Pathak VK, et al. Guidelines for naming nonprimate APOBEC3 genes and proteins. Journal of Virology. 83: 494-7. PMID 18987154 DOI: 10.1128/JVI.01976-08  1
2009 Malik HS. Evolution of TRIM antiviral genes in primate genomes Retrovirology. 6: I12. DOI: 10.1186/1742-4690-6-S2-I12  1
2008 OhAinle M, Kerns JA, Li MM, Malik HS, Emerman M. Antiretroelement activity of APOBEC3H was lost twice in recent human evolution. Cell Host & Microbe. 4: 249-59. PMID 18779051 DOI: 10.1016/j.chom.2008.07.005  1
2008 Kerns JA, Emerman M, Malik HS. Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein. Plos Genetics. 4: e21. PMID 18225958 DOI: 10.1371/journal.pgen.0040021  1
2007 Wiggins BL, Malik HS. Molecular evolution of Drosophila Cdc6, an essential DNA replication-licensing gene, suggests an adaptive choice of replication origins. Fly. 1: 155-63. PMID 18618020 DOI: 10.4161/fly.4599  1
2007 Sawyer SL, Emerman M, Malik HS. Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals. Plos Pathogens. 3: e197. PMID 18159944 DOI: 10.1371/journal.ppat.0030197  1
2007 Rodriguez MA, Vermaak D, Bayes JJ, Malik HS. Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 104: 15412-7. PMID 17878295 DOI: 10.1073/pnas.0707445104  1
2007 Kaiser SM, Malik HS, Emerman M. Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein. Science (New York, N.Y.). 316: 1756-8. PMID 17588933 DOI: 10.1126/science.1140579  1
2006 Sawyer SL, Malik HS. Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis. Proceedings of the National Academy of Sciences of the United States of America. 103: 17614-9. PMID 17101967 DOI: 10.1073/pnas.0605468103  1
2006 Malik HS. A hitchhiker's guide to survival finally makes CENs. The Journal of Cell Biology. 174: 747-9. PMID 16966417 DOI: 10.1083/jcb.200608107  1
2006 Malik HS, Bayes JJ. Genetic conflicts during meiosis and the evolutionary origins of centromere complexity. Biochemical Society Transactions. 34: 569-73. PMID 16856863 DOI: 10.1042/BST0340569  1
2006 OhAinle M, Kerns JA, Malik HS, Emerman M. Adaptive evolution and antiviral activity of the conserved mammalian cytidine deaminase APOBEC3H. Journal of Virology. 80: 3853-62. PMID 16571802 DOI: 10.1128/JVI.80.8.3853-3862.2006  1
2006 Sawyer SL, Wu LI, Akey JM, Emerman M, Malik HS. High-frequency persistence of an impaired allele of the retroviral defense gene TRIM5alpha in humans. Current Biology : Cb. 16: 95-100. PMID 16401428 DOI: 10.1016/j.cub.2005.11.045  1
2006 Cervantes MD, Xi X, Vermaak D, Yao MC, Malik HS. The CNA1 histone of the ciliate Tetrahymena thermophila is essential for chromosome segregation in the germline micronucleus. Molecular Biology of the Cell. 17: 485-97. PMID 16251352 DOI: 10.1091/mbc.E05-07-0698  1
2005 Malik HS. Mimulus finds centromeres in the driver's seat. Trends in Ecology & Evolution. 20: 151-4. PMID 16701359 DOI: 10.1016/j.tree.2005.01.014  1
2005 Malik HS, Henikoff S. Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster. Plos Genetics. 1: e44. PMID 16244705 DOI: 10.1371/journal.pgen.0010044  1
2005 Vermaak D, Henikoff S, Malik HS. Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. Plos Genetics. 1: 96-108. PMID 16103923 DOI: 10.1371/journal.pgen.0010009  1
2005 Malik HS. Ribonuclease H evolution in retrotransposable elements. Cytogenetic and Genome Research. 110: 392-401. PMID 16093691 DOI: 10.1159/000084971  1
2005 Sawyer SL, Wu LI, Emerman M, Malik HS. Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. Proceedings of the National Academy of Sciences of the United States of America. 102: 2832-7. PMID 15689398 DOI: 10.1073/pnas.0409853102  1
2004 Sawyer SL, Emerman M, Malik HS. Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G. Plos Biology. 2: E275. PMID 15269786 DOI: 10.1371/journal.pbio.0020275  1
2003 Malik HS, Henikoff S. Phylogenomics of the nucleosome. Nature Structural Biology. 10: 882-91. PMID 14583738 DOI: 10.1038/nsb996  1
2003 Jackman JE, Montange RK, Malik HS, Phizicky EM. Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9. Rna (New York, N.Y.). 9: 574-85. PMID 12702816 DOI: 10.1261/rna.5070303  1
2002 Malik HS, Henikoff S. Conflict begets complexity: the evolution of centromeres. Current Opinion in Genetics & Development. 12: 711-8. PMID 12433586 DOI: 10.1016/S0959-437X(02)00351-9  1
2002 Henikoff S, Malik HS. Centromeres: selfish drivers. Nature. 417: 227. PMID 12015578 DOI: 10.1038/417227a  1
2002 Burke WD, Malik HS, Rich SM, Eickbush TH. Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia. Molecular Biology and Evolution. 19: 619-30. PMID 11961096 DOI: 10.1093/oxfordjournals.molbev.a004121  1
2002 Malik HS, Vermaak D, Henikoff S. Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone. Proceedings of the National Academy of Sciences of the United States of America. 99: 1449-54. PMID 11805302 DOI: 10.1073/pnas.032664299  1
2001 Borodin PM, Henikoff S, Ahmad K, Malik HS. Speciation and centromere evolution [3] (multiple letters) Science. 294: 2478-2480. PMID 11770517 DOI: 10.1126/science.294.5551.2478  1
2001 Henikoff S, Ahmad K, Malik HS. The centromere paradox: stable inheritance with rapidly evolving DNA. Science (New York, N.Y.). 293: 1098-102. PMID 11498581 DOI: 10.1126/science.1062939  1
2001 Malik HS, Eickbush TH. Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Research. 11: 1187-97. PMID 11435400 DOI: 10.1101/gr.185101  1
2001 Malik HS, Henikoff S. Adaptive evolution of Cid, a centromere-specific histone in Drosophila. Genetics. 157: 1293-8. PMID 11238413  1
2001 Claypool JA, Malik HS, Eickbush TH, Sandmeyer SB. Ten-kilodalton domain in Ty3 Gag3-Pol3p between PR and RT is dispensable for Ty3 transposition. Journal of Virology. 75: 1557-60. PMID 11152529 DOI: 10.1128/JVI.75.3.1557-1560.2001  1
2000 Malik HS, Henikoff S, Eickbush TH. Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Research. 10: 1307-18. PMID 10984449 DOI: 10.1101/gr.145000  1
2000 Malik HS, Henikoff S. Dual recognition-incision enzymes might be involved in mismatch repair and meiosis. Trends in Biochemical Sciences. 25: 414-8. PMID 10973051 DOI: 10.1016/S0968-0004(00)01623-6  1
2000 Malik HS, Burke WD, Eickbush TH. Putative telomerase catalytic subunits from Giardia lamblia and Caenorhabditis elegans. Gene. 251: 101-8. PMID 10876087 DOI: 10.1016/S0378-1119(00)00207-9  1
2000 Malik HS, Eickbush TH. NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans. Genetics. 154: 193-203. PMID 10628980  1
1999 Yang J, Malik HS, Eickbush TH. Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proceedings of the National Academy of Sciences of the United States of America. 96: 7847-52. PMID 10393910 DOI: 10.1073/pnas.96.14.7847  1
1999 Malik HS, Burke WD, Eickbush TH. The age and evolution of non-LTR retrotransposable elements. Molecular Biology and Evolution. 16: 793-805. PMID 10368957 DOI: 10.1093/oxfordjournals.molbev.a026164  1
1999 Burke WD, Malik HS, Jones JP, Eickbush TH. The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods. Molecular Biology and Evolution. 16: 502-11. PMID 10331276 DOI: 10.1093/oxfordjournals.molbev.a026132  1
1999 Malik HS, Eickbush TH. Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. Journal of Virology. 73: 5186-90. PMID 10233986  1
1999 Malik HS, Eickbush TH. Retrotransposable elements R1 and R2 in the rDNA units of Drosophila mercatorum: abnormal abdomen revisited. Genetics. 151: 653-65. PMID 9927458  1
1998 Spinelli SL, Malik HS, Consaul SA, Phizicky EM. A functional homolog of a yeast tRNA splicing enzyme is conserved in higher eukaryotes and in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 95: 14136-41. PMID 9826666 DOI: 10.1073/pnas.95.24.14136  1
1998 Malik HS, Eickbush TH. The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs. Molecular Biology and Evolution. 15: 1123-34. PMID 9729877 DOI: 10.1093/oxfordjournals.molbev.a026020  1
1998 Hall BG, Malik HS. Determining the evolutionary potential of a gene. Molecular Biology and Evolution. 15: 1055-61. PMID 9718732 DOI: 10.1093/oxfordjournals.molbev.a026004  1
1998 Burke WD, Malik HS, Lathe WC, Eickbush TH. Are retrotransposons long-term hitchhikers? Nature. 392: 141-2. PMID 9515960 DOI: 10.1038/32330  1
1997 Malik HS, Eickbush TH, Goldfarb DS. Evolutionary specialization of the nuclear targeting apparatus. Proceedings of the National Academy of Sciences of the United States of America. 94: 13738-42. PMID 9391096 DOI: 10.1073/pnas.94.25.13738  1
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