Rod A. Wing - Publications

Affiliations: 
Clemson University, Clemson, SC, United States 
Area:
Genetics, Molecular Biology

246 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Park HS, Jayakodi M, Lee SH, Jeon JH, Lee HO, Park JY, Moon BC, Kim CK, Wing RA, Newmaster SG, Kim JY, Yang TJ. Author Correction: Mitochondrial plastid DNA can cause DNA barcoding paradox in plants. Scientific Reports. 11: 9599. PMID 33927337 DOI: 10.1038/s41598-021-89266-5  0.32
2021 Wu Z, Liu H, Zhan W, Yu Z, Qin E, Liu S, Yang T, Xiang N, Kudrna D, Chen Y, Lee S, Li G, Wing RA, Liu J, Xiong H, et al. The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis. Plant Biotechnology Journal. PMID 33768699 DOI: 10.1111/pbi.13586  0.6
2021 Yu H, Lin T, Meng X, Du H, Zhang J, Liu G, Chen M, Jing Y, Kou L, Li X, Gao Q, Liang Y, Liu X, Fan Z, Liang Y, ... ... Wing RA, et al. A route to de novo domestication of wild allotetraploid rice. Cell. PMID 33539781 DOI: 10.1016/j.cell.2021.01.013  0.6
2021 Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, ... ... Wing RA, et al. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. PMID 33505029 DOI: 10.1038/s41586-020-03127-1  0.6
2020 Tian P, Zhang X, Xia R, Liu Y, Wang M, Li B, Liu T, Shi J, Wing RA, Meyers BC, Chen M. Evolution and diversification of reproductive phased small interfering RNAs in Oryza species. The New Phytologist. PMID 33111313 DOI: 10.1111/nph.17035  0.4
2020 Paritosh K, Yadava SK, Singh P, Bhayana L, Mukhopadhyay A, Gupta V, Bisht NC, Zhang J, Kudrna DA, Copetti D, Wing RA, Reddy VB, Pradhan AK, Pental D. A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes. Plant Biotechnology Journal. PMID 33073461 DOI: 10.1111/pbi.13492  0.6
2020 Mussurova S, Al-Bader N, Zuccolo A, Wing RA. Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice. Frontiers in Plant Science. 11: 579980. PMID 33072154 DOI: 10.3389/fpls.2020.579980  0.36
2020 Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, ... Wing RA, et al. Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K). Gigascience. 9. PMID 32810278 DOI: 10.1093/Gigascience/Giaa080  0.48
2020 Park HS, Jayakodi M, Lee SH, Jeon JH, Lee HO, Park JY, Moon BC, Kim CK, Wing RA, Newmaster SG, Kim JY, Yang TJ. Mitochondrial plastid DNA can cause DNA barcoding paradox in plants. Scientific Reports. 10: 6112. PMID 32273595 DOI: 10.1038/S41598-020-63233-Y  0.32
2020 Zhou Y, Chebotarov D, Kudrna D, Llaca V, Lee S, Rajasekar S, Mohammed N, Al-Bader N, Sobel-Sorenson C, Parakkal P, Arbelaez LJ, Franco N, Alexandrov N, Hamilton NRS, Leung H, ... ... Wing RA, et al. A platinum standard pan-genome resource that represents the population structure of Asian rice. Scientific Data. 7: 113. PMID 32265447 DOI: 10.1038/S41597-020-0438-2  0.6
2020 Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, ... ... Wing R, et al. Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels. Genome Biology and Evolution. PMID 32125373 DOI: 10.1093/Gbe/Evaa037  0.6
2020 Flynn JM, Long M, Wing RA, Clark AG. Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis. Molecular Biology and Evolution. PMID 31960929 DOI: 10.1093/Molbev/Msaa010  0.84
2019 Jain R, Jenkins J, Shu S, Chern M, Martin JA, Copetti D, Duong PQ, Pham NT, Kudrna DA, Talag J, Schackwitz WS, Lipzen AM, Dilworth D, Bauer D, Grimwood J, ... ... Wing RA, et al. Genome sequence of the model rice variety KitaakeX. Bmc Genomics. 20: 905. PMID 31775618 DOI: 10.1186/S12864-019-6262-4  0.6
2019 Hazzouri KM, Gros-Balthazard M, Flowers JM, Copetti D, Lemansour A, Lebrun M, Masmoudi K, Ferrand S, Dhar MI, Fresquez ZA, Rosas U, Zhang J, Talag J, Lee S, Kudrna D, ... ... Wing RA, et al. Genome-wide association mapping of date palm fruit traits. Nature Communications. 10: 4680. PMID 31615981 DOI: 10.1038/S41467-019-12604-9  0.6
2019 Chen E, Huang X, Tian Z, Wing RA, Han B. The Genomics of Species Provides Insights into Rice Domestication and Heterosis. Annual Review of Plant Biology. 70: 639-665. PMID 31035826 DOI: 10.1146/Annurev-Arplant-050718-100320  0.4
2019 Zhang L, Ren Y, Yang T, Li G, Chen J, Gschwend AR, Yu Y, Hou G, Zi J, Zhou R, Wen B, Zhang J, Chougule K, Wang M, Copetti D, ... ... Wing RA, et al. Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution. PMID 30858588 DOI: 10.1038/S41559-019-0822-5  1
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  1
2018 Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M. Comparison of Oryza sativa and Oryza brachyantha genomes reveals selection-driven gene escape from the centromeric regions. The Plant Cell. PMID 29967288 DOI: 10.1105/Tpc.18.00163  0.4
2018 Wing RA, Purugganan MD, Zhang Q. The rice genome revolution: from an ancient grain to Green Super Rice. Nature Reviews. Genetics. PMID 29872215 DOI: 10.1038/S41576-018-0024-Z  0.36
2018 Lv S, Wu W, Wang M, Meyer RS, Ndjiondjop MN, Tan L, Zhou H, Zhang J, Fu Y, Cai H, Sun C, Wing RA, Zhu Z. Genetic control of seed shattering during African rice domestication. Nature Plants. 4: 331-337. PMID 29872176 DOI: 10.1038/S41477-018-0164-3  0.6
2018 Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, ... ... Wing RA, et al. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature. PMID 29695866 DOI: 10.1038/S41586-018-0063-9  0.6
2018 Kim NH, Jayakodi M, Lee SC, Choi BS, Jang W, Lee J, Kim HH, Waminal NE, Lakshmanan M, Van Nguyen B, Lee YS, Park HS, Koo HJ, Park JY, Perumal S, ... ... Wing RA, et al. Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal. PMID 29604169 DOI: 10.1111/Pbi.12926  1
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  1
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Wing R, et al. Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 1585. PMID 29185503 DOI: 10.1038/S41559-017-0310-8  1
2017 Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, ... ... Wing RA, et al. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications. 8: 1279. PMID 29093472 DOI: 10.1038/S41467-017-01064-8  0.84
2017 Copetti D, Búrquez A, Bustamante E, Charboneau JLM, Childs KL, Eguiarte LE, Lee S, Liu TL, McMahon MM, Whiteman NK, Wing RA, Wojciechowski MF, Sanderson MJ. Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078296 DOI: 10.1073/Pnas.1706367114  0.6
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Wing R, et al. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 119. PMID 28812690 DOI: 10.1038/S41559-017-0119  1
2017 Wu W, Liu X, Wang M, Meyer RS, Luo X, Ndjiondjop MN, Tan L, Zhang J, Wu J, Cai H, Sun C, Wang X, Wing RA, Zhu Z. A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. Nature Plants. 3: 17064. PMID 28481332 DOI: 10.1038/Nplants.2017.64  0.6
2017 Thakare D, Zhang J, Wing RA, Cotty PJ, Schmidt MA. Aflatoxin-free transgenic maize using host-induced gene silencing. Science Advances. 3: e1602382. PMID 28345051 DOI: 10.1126/Sciadv.1602382  0.6
2017 Eizenga GC, Sanchez PL, Jackson AK, Edwards JD, Hurwitz BL, Wing RA, Kudrna DA. Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population Molecular Breeding. 37: 135. DOI: 10.1007/S11032-017-0734-5  0.36
2016 Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, et al. Rice SNP-seek database update: new SNPs, indels, and queries. Nucleic Acids Research. PMID 27899667 DOI: 10.1093/Nar/Gkw1135  0.6
2016 Brozynska M, Copetti D, Furtado A, Wing RA, Crayn D, Fox G, Ishikawa R, Henry RJ. Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal. PMID 27889940 DOI: 10.1111/Pbi.12674  0.6
2016 Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, ... ... Wing R, et al. Erratum: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants. 2: 16189. PMID 27819656 DOI: 10.1038/nplants.2016.189  0.6
2016 Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, ... ... Wing R, et al. The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants. 2: 16167. PMID 27797353 DOI: 10.1038/Nplants.2016.167  0.6
2016 van Andel TR, Meyer RS, Aflitos SA, Carney JA, Veltman MA, Copetti D, Flowers JM, Havinga RM, Maat H, Purugganan MD, Wing RA, Schranz ME. Tracing ancestor rice of Suriname Maroons back to its African origin. Nature Plants. 2: 16149. PMID 27694825 DOI: 10.1038/Nplants.2016.149  0.6
2016 Copetti D, Wing RA. The dark side of the genome: revealing the native transposable element/repeat content of eukaryotic genomes. Molecular Plant. PMID 27693675 DOI: 10.1016/J.Molp.2016.09.006  0.6
2016 Zhang J, Chen LL, Sun S, Kudrna D, Copetti D, Li W, Mu T, Jiao WB, Xing F, Lee S, Talag J, Song JM, Du B, Xie W, Luo M, ... ... Wing RA, et al. Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data. Scientific Data. 3: 160076. PMID 27622467 DOI: 10.1038/Sdata.2016.76  0.44
2016 Wicker T, Yu Y, Haberer G, Mayer KF, Marri PR, Rounsley S, Chen M, Zuccolo A, Panaud O, Wing RA, Roffler S. DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications. 7: 12790. PMID 27599761 DOI: 10.1038/Ncomms12790  1
2016 Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, ... ... Wing RA, et al. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535938 DOI: 10.1073/Pnas.1611012113  0.44
2016 Zhang J, Kudrna D, Mu T, Li W, Copetti D, Yu Y, Goicoechea JL, Lei Y, Wing RA. Genome Puzzle Master (GPM) - An integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics (Oxford, England). PMID 27318200 DOI: 10.1093/Bioinformatics/Btw370  1
2016 Ray S, Bose LK, Ray J, Ngangkham U, Katara JL, Samantaray S, Behera L, Anumalla M, Singh ON, Chen M, Wing RA, Mohapatra T. Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Molecular Genetics and Genomics : Mgg. PMID 27299359 DOI: 10.1007/S00438-016-1214-Z  0.44
2016 Wang J, Yu Y, Tao F, Zhang J, Copetti D, Kudrna D, Talag J, Lee S, Wing RA, Fan C. DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology. 17: 92. PMID 27154274 DOI: 10.1186/S13059-016-0954-8  0.44
2016 Bai Z, Chen J, Liao Y, Wang M, Liu R, Ge S, Wing RA, Chen M. The impact and origin of copy number variations in the Oryza species. Bmc Genomics. 17: 261. PMID 27025496 DOI: 10.1186/S12864-016-2589-2  0.4
2016 Wendel JF, Jackson SA, Meyers BC, Wing RA. Evolution of plant genome architecture. Genome Biology. 17: 37. PMID 26926526 DOI: 10.1186/S13059-016-0908-1  0.44
2015 De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, ... ... Wing RA, et al. Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Scientific Reports. 5: 17394. PMID 26617401 DOI: 10.1038/Srep17394  1
2015 Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, ... ... Wing RA, et al. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports. 5: 15655. PMID 26506948 DOI: 10.1038/Srep15655  1
2015 Wing RA. Harvesting rice's dispensable genome. Genome Biology. 16: 217. PMID 26429765 DOI: 10.1186/S13059-015-0787-X  1
2015 Wicker T, Wing RA, Schubert I. Recurrent sequence exchange between homeologous grass chromosomes. The Plant Journal : For Cell and Molecular Biology. PMID 26408412 DOI: 10.1111/Tpj.13040  1
2015 Zhang Y, Zhang S, Liu H, Fu B, Li L, Xie M, Song Y, Li X, Cai J, Wan W, Kui L, Huang H, Lyu J, Dong Y, Wang W, ... Wing RA, et al. Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility. Molecular Plant. PMID 26358679 DOI: 10.1016/J.Molp.2015.08.006  0.44
2015 Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, ... ... Wing R, et al. Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. The Plant Journal : For Cell and Molecular Biology. PMID 26252423 DOI: 10.1111/Tpj.12959  1
2015 Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF. Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat. American Journal of Botany. 102: 1115-27. PMID 26199368 DOI: 10.3732/Ajb.1500184  1
2015 Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, ... ... Wing RA, et al. RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. Bmc Genomics. 16: 538. PMID 26194356 DOI: 10.1186/S12864-015-1762-3  1
2015 Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/Fpls.2015.00216  1
2014 Geering AD, Maumus F, Copetti D, Choisne N, Zwickl DJ, Zytnicki M, McTaggart AR, Scalabrin S, Vezzulli S, Wing RA, Quesneville H, Teycheney PY. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications. 5: 5269. PMID 25381880 DOI: 10.1038/Ncomms6269  1
2014 Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, ... ... Wing RA, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/Ng.3044  1
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, ... ... Wing RA, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/Ng.3008  1
2014 Zwickl DJ, Stein JC, Wing RA, Ware D, Sanderson MJ. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Systematic Biology. 63: 645-59. PMID 24721692 DOI: 10.1093/Sysbio/Syu027  1
2014 Wang X, Kudrna DA, Pan Y, Wang H, Liu L, Lin H, Zhang J, Song X, Goicoechea JL, Wing RA, Zhang Q, Luo M. Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping. Genetics. 196: 937-49. PMID 24424778 DOI: 10.1534/Genetics.113.159970  1
2014 Pan Y, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M. Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. The Plant Journal : For Cell and Molecular Biology. 77: 795-805. PMID 24330235 DOI: 10.1111/Tpj.12412  1
2014 Jacquemin J, Ammiraju JS, Haberer G, Billheimer DD, Yu Y, Liu LC, Rivera LF, Mayer K, Chen M, Wing RA. Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion. Molecular Plant. 7: 642-56. PMID 24214894 DOI: 10.1093/Mp/Sst149  1
2014 Ortiz M, Legatzki A, Neilson JW, Fryslie B, Nelson WM, Wing RA, Soderlund CA, Pryor BM, Maier RM. Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. The Isme Journal. 8: 478-91. PMID 24030597 DOI: 10.1038/Ismej.2013.159  1
2013 Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (New York, N.Y.). 342: 1516-7. PMID 24357320 DOI: 10.1126/Science.1241130  1
2013 Wang C, Shi X, Liu L, Li H, Ammiraju JS, Kudrna DA, Xiong W, Wang H, Dai Z, Zheng Y, Lai J, Jin W, Messing J, Bennetzen JL, Wing RA, et al. Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics. 195: 723-37. PMID 24037269 DOI: 10.1534/Genetics.113.157115  1
2013 Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, ... ... Wing RA, et al. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature. 500: 335-9. PMID 23883927 DOI: 10.1038/Nature12309  1
2013 Matsuba Y, Nguyen TTH, Wiegert K, Falara V, Gonzales-Vigil E, Leong B, Schäfer P, Kudrna D, Wing RA, Bolger AM, Usadel B, Tissier A, Fernie AR, Barry CS, Pichersky E. Evolution of a complex locus for terpene biosynthesis in Solanum Plant Cell. 25: 2022-2036. PMID 23757397 DOI: 10.1105/Tpc.113.111013  1
2013 Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, et al. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology. 83: 177-89. PMID 23708951 DOI: 10.1007/S11103-013-0077-5  0.6
2013 Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/Gbe/Evt071  1
2013 Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. The Reference Genome of the Halophytic Plant Eutrema salsugineum. Frontiers in Plant Science. 4: 46. PMID 23518688 DOI: 10.3389/Fpls.2013.00046  1
2013 Jacquemin J, Bhatia D, Singh K, Wing RA. The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology. 16: 147-56. PMID 23518283 DOI: 10.1016/J.Pbi.2013.02.014  1
2013 Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, ... ... Wing RA, et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications. 4: 1595. PMID 23481403 DOI: 10.1038/Ncomms2596  1
2013 Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/Pnas.1220766110  1
2013 Koo HJ, McDowell ET, Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR. Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. Bmc Plant Biology. 13: 27. PMID 23410187 DOI: 10.1186/1471-2229-13-27  1
2013 Ortiz M, Neilson JW, Nelson WM, Legatzki A, Byrne A, Yu Y, Wing RA, Soderlund CA, Pryor BM, Pierson LS, Maier RM. Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ. Microbial Ecology. 65: 371-83. PMID 23224253 DOI: 10.1007/S00248-012-0143-6  1
2013 Horvath DP, Kudrna D, Talag J, Anderson JV, Chao WS, Wing R, Foley ME, Doǧramaci M. BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs Weed Science. 61: 303-309. DOI: 10.1614/Ws-D-12-00175.1  1
2012 Yang L, Liu T, Li B, Sui Y, Chen J, Shi J, Wing RA, Chen M. Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes. Plos One. 7: e50236. PMID 23185584 DOI: 10.1371/Journal.Pone.0050236  1
2012 Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N. A physical, genetic and functional sequence assembly of the barley genome. Nature. 491: 711-6. PMID 23075845 DOI: 10.1038/Nature11543  1
2012 Neilson JW, Quade J, Ortiz M, Nelson WM, Legatzki A, Tian F, LaComb M, Betancourt JL, Wing RA, Soderlund CA, Maier RM. Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile. Extremophiles : Life Under Extreme Conditions. 16: 553-66. PMID 22527047 DOI: 10.1007/S00792-012-0454-Z  1
2012 Figueira TR, Okura V, Rodrigues da Silva F, Jose da Silva M, Kudrna D, Ammiraju JS, Talag J, Wing R, Arruda P. A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. Bmc Research Notes. 5: 185. PMID 22524198 DOI: 10.1186/1756-0500-5-185  0.6
2012 Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA. Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.). G3 (Bethesda, Md.). 2: 321-9. PMID 22413085 DOI: 10.1534/G3.111.001834  1
2012 Li HJ, Li XH, Xiao JH, Wing RA, Wang SP. Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice. Molecular Plant. 5: 281-90. PMID 21930802 DOI: 10.1093/Mp/Ssr079  1
2011 Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/Tpc.111.085605  1
2011 Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, ... ... Wing RA, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/Gb-2011-12-5-R48  1
2011 Jacquemin J, Chaparro C, Laudié M, Berger A, Gavory F, Goicoechea JL, Wing RA, Cooke R. Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species. Molecular Biology and Evolution. 28: 3139-50. PMID 21616911 DOI: 10.1093/Molbev/Msr144  1
2011 Blair MW, Hurtado N, Chavarro CM, Muñoz-Torres MC, Giraldo MC, Pedraza F, Tomkins J, Wing R. Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. Bmc Plant Biology. 11: 50. PMID 21426554 DOI: 10.1186/1471-2229-11-50  1
2011 Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA. Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. Bmc Genomics. 12: 142. PMID 21385395 DOI: 10.1186/1471-2164-12-142  1
2011 Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J. Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. Bmc Genomics. 12: 137. PMID 21375742 DOI: 10.1186/1471-2164-12-137  1
2011 Song X, Goicoechea JL, Ammiraju JS, Luo M, He R, Lin J, Lee SJ, Sisneros N, Watts T, Kudrna DA, Golser W, Ashley E, Collura K, Braidotti M, Yu Y, ... ... Wing RA, et al. The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. Genetics. 187: 1023-30. PMID 21321134 DOI: 10.1534/Genetics.111.126540  1
2011 Lin J, Kudrna D, Wing RA. Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine & Biotechnology. 2011: 476723. PMID 21234344 DOI: 10.1155/2011/476723  1
2011 Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wing R, et al. The genome of Theobroma cacao Nature Genetics. 43: 101-108. PMID 21186351 DOI: 10.1038/Ng.736  1
2011 Gao D, Gong Z, Wing RA, Jiang J, Jackson SA. Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata Tropical Plant Biology. 4: 217-227. DOI: 10.1007/S12042-011-9083-4  1
2010 Febrer M, Goicoechea JL, Wright J, McKenzie N, Song X, Lin J, Collura K, Wissotski M, Yu Y, Ammiraju JS, Wolny E, Idziak D, Betekhtin A, Kudrna D, Hasterok R, ... Wing RA, et al. An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research. Plos One. 5: e13461. PMID 20976139 DOI: 10.1371/Journal.Pone.0013461  1
2010 Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, Ware D, Wing RA, Stein L. Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 990-1003. PMID 20626650 DOI: 10.1111/J.1365-313X.2010.04293.X  1
2010 Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, ... ... Wing RA, et al. A draft physical map of a D-genome cotton species (Gossypium raimondii). Bmc Genomics. 11: 395. PMID 20569427 DOI: 10.1186/1471-2164-11-395  1
2010 Geraldes A, Rambo T, Wing RA, Ferrand N, Nachman MW. Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution. 27: 2437-40. PMID 20525900 DOI: 10.1093/Molbev/Msq139  1
2010 Sanyal A, Ammiraju JS, Lu F, Yu Y, Rambo T, Currie J, Kollura K, Kim HR, Chen J, Ma J, San Miguel P, Mingsheng C, Wing RA, Jackson SA. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Molecular Biology and Evolution. 27: 2487-506. PMID 20522726 DOI: 10.1093/Molbev/Msq133  1
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, ... ... Wing RA, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X  1
2010 Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL. Genomic structure and evolution of the Pi2/9 locus in wild rice species. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 295-309. PMID 20229250 DOI: 10.1007/S00122-010-1310-0  1
2010 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Wing RA, et al. Genome sequence of the palaeopolyploid soybean. Nature. 463: 178-83. PMID 20075913 DOI: 10.1038/Nature08670  1
2010 Cranston KA, Hurwitz B, Sanderson MJ, Ware D, Wing RA, Stein L. Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae) Systematic Botany. 35: 512-523. DOI: 10.1600/036364410792495872  1
2010 Ammiraju JSS, Song X, Luo M, Sisneros N, Angelova A, Kudrna D, Kim H, Yu Y, Goicoechea JL, Lorieux M, Kurata N, Brar D, Ware D, Jackson S, Wing RA. The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives Breeding Science. 60: 536-543. DOI: 10.1270/Jsbbs.60.536  1
2010 Argout X, Salse J, Aury JM, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Guiltinan M, Maximova S, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wing R, et al. Deciphering the genome structure and paleohistory of Theobroma cacao Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4908.1  0.84
2010 Goicoechea JL, Ammiraju JSS, Marri PR, Chen M, Jackson S, Yu Y, Rounsley S, Wing RA. The future of rice genomics: Sequencing the collective Oryza genome Rice. 3: 89-97. DOI: 10.1007/S12284-010-9052-9  1
2010 Zuccolo A, Sebastian A, Yu Y, Jackson S, Rounsley S, Billheimer D, Wing RA. Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima Rice. 3: 242-250. DOI: 10.1007/S12284-010-9046-7  1
2010 Henry RJ, Rice N, Waters DLE, Kasem S, Ishikawa R, Hao Y, Dillon S, Crayn D, Wing R, Vaughan D. Australian Oryza: Utility and conservation Rice. 3: 235-241. DOI: 10.1007/S12284-009-9034-Y  1
2009 Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA. Species trees from highly incongruent gene trees in rice. Systematic Biology. 58: 489-500. PMID 20525603 DOI: 10.1093/Sysbio/Syp054  1
2009 Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, et al. A single molecule scaffold for the maize genome. Plos Genetics. 5: e1000711. PMID 19936062 DOI: 10.1371/Journal.Pgen.1000711  1
2009 Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, ... ... Wing RA, et al. The physical and genetic framework of the maize B73 genome. Plos Genetics. 5: e1000715. PMID 19936061 DOI: 10.1371/Journal.Pgen.1000715  1
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Wing RA, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  1
2009 Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/J.1365-313X.2009.04005.X  1
2009 Nah G, Pagliarulo CL, Mohr PG, Luo M, Sisneros N, Yu Y, Collura K, Currie J, Goicoechea JL, Wing RA, Schumaker KS. Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana. Genomics. 94: 196-203. PMID 19481598 DOI: 10.1016/J.Ygeno.2009.05.007  1
2009 Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA. Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proceedings of the National Academy of Sciences of the United States of America. 106: 9063-8. PMID 19451630 DOI: 10.1073/Pnas.0900194106  1
2009 Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 2071-6. PMID 19164767 DOI: 10.1073/Pnas.0812798106  1
2009 Zhang H, DiBaise JK, Zuccolo A, Kudrna D, Braidotti M, Yu Y, Parameswaran P, Crowell MD, Wing R, Rittmann BE, Krajmalnik-Brown R. Human gut microbiota in obesity and after gastric bypass. Proceedings of the National Academy of Sciences of the United States of America. 106: 2365-70. PMID 19164560 DOI: 10.1073/Pnas.0812600106  1
2009 Rounsley S, Marri PR, Yu Y, He R, Sisneros N, Goicoechea JL, Lee SJ, Angelova A, Kudrna D, Luo M, Affourtit J, Desany B, Knight J, Niazi F, Egholm M, ... Wing RA, et al. De novo next generation sequencing of plant genomes Rice. 2: 35-43. DOI: 10.1007/S12284-009-9025-Z  1
2008 Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant. 1: 839-50. PMID 19825586 DOI: 10.1093/Mp/Ssn050  1
2008 Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, et al. Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. Bmc Genomics. 9: 621. PMID 19099592 DOI: 10.1186/1471-2164-9-621  1
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, ... ... Wing RA, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/Tpc.108.063727  1
2008 Wei F, Wing RA. A fruitful outcome to the papaya genome project. Genome Biology. 9: 227. PMID 18557995 DOI: 10.1186/Gb-2008-9-6-227  1
2008 Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF. A phylogenetic analysis of indel dynamics in the cotton genus. Molecular Biology and Evolution. 25: 1415-28. PMID 18400789 DOI: 10.1093/Molbev/Msn085  1
2008 Shoemaker RC, Grant D, Olson T, Warren WC, Wing R, Yu Y, Kim H, Cregan P, Joseph B, Futrell-Griggs M, Nelson W, Davito J, Walker J, Wallis J, Kremitski C, et al. Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 51: 294-302. PMID 18356965 DOI: 10.1139/G08-010  1
2008 Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/Gb-2008-9-3-402  1
2008 Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, ... ... Wing RA, et al. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biology. 9: R45. PMID 18304353 DOI: 10.1186/Gb-2008-9-2-R45  1
2008 Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, ... ... Wing RA, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research. 36: D1028-33. PMID 18089549 DOI: 10.1093/Nar/Gkm978  0.4
2008 Roulin A, Piegu B, Wing RA, Panaud O. Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 53: 950-9. PMID 18088314 DOI: 10.1111/J.1365-313X.2007.03388.X  1
2008 Qu S, Desai A, Wing R, Sundaresan V. A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants. Plant Physiology. 146: 189-99. PMID 17993541 DOI: 10.1104/Pp.107.111427  1
2008 Maughan PJ, Sisneros N, Luo M, Kudrna D, Ammiraju JSS, Wing RA. Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes Crop Science. 48: S85-S94. DOI: 10.2135/Cropsci2007.08.0434Tpg  1
2008 Meier S, Gehring C, MacPherson CR, Kaur M, Maqungo M, Reuben S, Muyanga S, Shih MD, Wei FJ, Wanchana S, Mauleon R, Radovanovic A, Bruskiewich R, Tanaka T, Mohanty B, ... ... Wing R, et al. The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network Rice. 1: 177-187. DOI: 10.1007/S12284-008-9017-4  1
2008 Zuccolo A, Ammiraju JSS, Kim H, Sanyal A, Jackson S, Wing RA. Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza Rice. 1: 85-99. DOI: 10.1007/S12284-008-9002-Y  1
2007 Chen KY, Cong B, Wing R, Vrebalov J, Tanksley SD. Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes. Science (New York, N.Y.). 318: 643-5. PMID 17962563 DOI: 10.1126/Science.1148428  1
2007 Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 52: 342-51. PMID 17764506 DOI: 10.1111/J.1365-313X.2007.03242.X  1
2007 Zuccolo A, Sebastian A, Talag J, Yu Y, Kim H, Collura K, Kudrna D, Wing RA. Transposable element distribution, abundance and role in genome size variation in the genus Oryza. Bmc Evolutionary Biology. 7: 152. PMID 17727727 DOI: 10.1186/1471-2148-7-152  1
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Evolutionary history and positional shift of a rice centromere. Genetics. 177: 1217-20. PMID 17660534 DOI: 10.1534/Genetics.107.078709  1
2007 Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, ... ... Wing RA, et al. Physical and genetic structure of the maize genome reflects its complex evolutionary history. Plos Genetics. 3: e123. PMID 17658954 DOI: 10.1371/Journal.Pgen.0030123  0.6
2007 Venu RC, Jia Y, Gowda M, Jia MH, Jantasuriyarat C, Stahlberg E, Li H, Rhineheart A, Boddhireddy P, Singh P, Rutger N, Kudrna D, Wing R, Nelson JC, Wang GL. RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection. Molecular Genetics and Genomics : Mgg. 278: 421-31. PMID 17579886 DOI: 10.1007/S00438-007-0260-Y  0.6
2007 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). The Plant Journal : For Cell and Molecular Biology. 50: 995-1006. PMID 17461788 DOI: 10.1111/J.1365-313X.2007.03102.X  1
2007 Gowda M, Venu RC, Li H, Jantasuriyarat C, Chen S, Bellizzi M, Pampanwar V, Kim H, Dean RA, Stahlberg E, Wing R, Soderlund C, Wang GL. Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiology. 144: 524-33. PMID 17351054 DOI: 10.1104/Pp.107.095653  0.36
2007 Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA. Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics. 176: 379-90. PMID 17339227 DOI: 10.1534/Genetics.106.068783  1
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics : Tig. 23: 134-9. PMID 17275131 DOI: 10.1016/J.Tig.2007.01.004  1
2007 Nelson WM, Dvorak J, Luo MC, Messing J, Wing RA, Soderlund C. Efficacy of clone fingerprinting methodologies. Genomics. 89: 160-5. PMID 17011744 DOI: 10.1016/J.Ygeno.2006.08.008  1
2007 Jung J, Won SY, Suh SC, Kim H, Wing R, Jeong Y, Hwang I, Kim M. The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis. Planta. 225: 575-88. PMID 16937017 DOI: 10.1007/S00425-006-0373-2  0.36
2007 Wing RA, Kim H, Goicoechea JL, Yu Y, Kudrna D, Zuccolo A, Ammiraju JSS, Luo M, Nelson W, Ma J, Sanmiguel P, Hurwitz B, Ware D, Brar D, Mackill D, et al. The oryza map alignment project (OMAP): A new resource for comparative genome studies within oryza Rice Functional Genomics: Challenges, Progress and Prospects. 395-409. DOI: 10.3860/Irrn.V31I2.1142  1
2007 Liang H, Fang EG, Tomkins JP, Luo M, Kudrna D, Kim HR, Arumuganathan K, Zhao S, Leebens-Mack J, Schlarbaum SE, Banks JA, Depamphilis CW, Mandoli DF, Wing RA, Carlson JE. Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis Tree Genetics and Genomes. 3: 215-225. DOI: 10.1007/S11295-006-0057-X  1
2007 Matsumoto T, Wing RA, Han B, Sasaki T. Rice genome sequence: The foundation for understanding the genetic systems Rice Functional Genomics: Challenges, Progress and Prospects. 5-20. DOI: 10.1007/0-387-48914-2_2  1
2006 Adema CM, Luo MZ, Hanelt B, Hertel LA, Marshall JJ, Zhang SM, DeJong RJ, Kim HR, Kudrna D, Wing RA, Soderlund C, Knight M, Lewis FA, Caldeira RL, Jannotti-Passos LK, et al. A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. MemóRias Do Instituto Oswaldo Cruz. 101: 167-77. PMID 17308766 DOI: 10.1590/S0074-02762006000900027  1
2006 Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. Bmc Genomics. 7: 310. PMID 17156450 DOI: 10.1186/1471-2164-7-310  1
2006 Soderlund C, Haller K, Pampanwar V, Ebbole D, Farman M, Orbach MJ, Wang GL, Wing R, Xu JR, Brown D, Mitchell T, Dean R. MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions. Molecular Plant-Microbe Interactions : Mpmi. 19: 1055-61. PMID 17022169 DOI: 10.1094/Mpmi-19-1055  1
2006 Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research. 16: 1262-9. PMID 16963705 DOI: 10.1101/Gr.5290206  1
2006 Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research. 16: 1252-61. PMID 16954538 DOI: 10.1101/Gr.5282906  1
2006 Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, ... ... Wing RA, et al. Uneven chromosome contraction and expansion in the maize genome. Genome Research. 16: 1241-51. PMID 16902087 DOI: 10.1101/Gr.5338906  1
2006 Cunningham C, Hikima J, Jenny MJ, Chapman RW, Fang GC, Saski C, Lundqvist ML, Wing RA, Cupit PM, Gross PS, Warr GW, Tomkins JP. New resources for marine genomics: bacterial artificial chromosome libraries for the Eastern and Pacific oysters (Crassostrea virginica and C. gigas). Marine Biotechnology (New York, N.Y.). 8: 521-33. PMID 16896533 DOI: 10.1007/S10126-006-6013-9  1
2006 Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, ... ... Wing RA, et al. Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. Bmc Genomics. 7: 199. PMID 16895597 DOI: 10.1186/1471-2164-7-199  1
2006 Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/Tpc.106.043794  1
2006 Luo M, Kim H, Kudrna D, Sisneros NB, Lee SJ, Mueller C, Collura K, Zuccolo A, Buckingham EB, Grim SM, Yanagiya K, Inoko H, Shiina T, Flajnik MF, Wing RA, et al. Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. Bmc Genomics. 7: 106. PMID 16672057 DOI: 10.1186/1471-2164-7-106  1
2006 Udall JA, Swanson JM, Haller K, Rapp RA, Sparks ME, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat AB, Sickler BA, Wilkins TA, Guo JY, Chen XY, Scheffler J, ... ... Wing R, et al. A global assembly of cotton ESTs. Genome Research. 16: 441-50. PMID 16478941 DOI: 10.1101/Gr.4602906  1
2006 Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, ... ... Wing RA, et al. The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research. 16: 140-7. PMID 16344555 DOI: 10.1101/Gr.3766306  1
2006 Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP. Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region. Genomics. 87: 181-90. PMID 16321505 DOI: 10.1016/J.Ygeno.2005.09.005  1
2006 Lin YR, Chow TY, Luo M, Kudrna D, Lin CC, Wing RA, Hsing YIC. Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research Plant Science. 170: 889-896. DOI: 10.1016/J.Plantsci.2005.12.016  1
2005 Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, Fuks G, Butler E, Wing RA, Rounsley S, Birren B, Nusbaum C, Mayer KF, Messing J. Structure and architecture of the maize genome. Plant Physiology. 139: 1612-24. PMID 16339807 DOI: 10.1104/Pp.105.068718  1
2005 Kumar CS, Wing RA, Sundaresan V. Efficient insertional mutagenesis in rice using the maize En/Spm elements. The Plant Journal : For Cell and Molecular Biology. 44: 879-92. PMID 16297077 DOI: 10.1111/J.1365-313X.2005.02570.X  1
2005 Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, et al. The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology. 59: 53-62. PMID 16217601 DOI: 10.1007/S11103-004-6237-X  1
2005 Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA. Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 1596-607. PMID 16200416 DOI: 10.1007/S00122-005-0091-3  1
2005 Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, et al. Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology. 139: 869-84. PMID 16169961 DOI: 10.1104/Pp.105.066134  1
2005 Nelson WM, Bharti AK, Butler E, Wei F, Fuks G, Kim H, Wing RA, Messing J, Soderlund C. Whole-genome validation of high-information-content fingerprinting. Plant Physiology. 139: 27-38. PMID 16166258 DOI: 10.1104/Pp.105.061978  1
2005 Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC, Exum HE, Goff VH, Herrick KL, Steele CL, Karunakaran S, ... ... Wing RA, et al. Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proceedings of the National Academy of Sciences of the United States of America. 102: 13206-11. PMID 16141333 DOI: 10.1073/Pnas.0502365102  0.36
2005 Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, ... ... Wing RA, et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Research. 15: 1284-91. PMID 16109971 DOI: 10.1101/Gr.3869505  1
2005 Yang TJ, Lee S, Chang SB, Yu Y, de Jong H, Wing RA. In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons. Chromosoma. 114: 103-17. PMID 15965704 DOI: 10.1007/S00412-005-0342-8  1
2005 Yang TJ, Yu Y, Chang SB, de Jong H, Oh CS, Ahn SN, Fang E, Wing RA. Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 467-78. PMID 15965650 DOI: 10.1007/S00122-005-2034-4  1
2005 Wang W, Tanurdzic M, Luo M, Sisneros N, Kim HR, Weng JK, Kudrna D, Mueller C, Arumuganathan K, Carlson J, Chapple C, de Pamphilis C, Mandoli D, Tomkins J, Wing RA, et al. Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. Bmc Plant Biology. 5: 10. PMID 15955246 DOI: 10.1186/1471-2229-5-10  1
2005 Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology. 138: 105-15. PMID 15888683 DOI: 10.1104/Pp.104.055624  1
2005 Horn R, Lecouls AC, Callahan A, Dandekar A, Garay L, McCord P, Howad W, Chan H, Verde I, Main D, Jung S, Georgi L, Forrest S, Mook J, Zhebentyayeva T, ... ... Wing R, et al. Candidate gene database and transcript map for peach, a model species for fruit trees. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 110: 1419-28. PMID 15846479 DOI: 10.1007/S00122-005-1968-X  1
2005 Choisne N, Demange N, Orjeda G, Samain S, D'Hont A, Cattolico L, Pelletier E, Couloux A, Segurens B, Wincker P, Scarpelli C, Weissenbach J, Salanoubat M, Singh NK, Mohapatra T, ... ... Wing RA, et al. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications Bmc Biology. 3. DOI: 10.1186/1741-7007-3-20  1
2005 Yu Y, Wing RA. Whole genome sequencing: Methodology and progress in cereals Cereal Genomics. 385-423. DOI: 10.1007/1-4020-2359-6_13  1
2004 Tomkins J, Fregene M, Main D, Kim H, Wing R, Tohme J. Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz). Plant Molecular Biology. 56: 555-61. PMID 15630619 DOI: 10.1007/S11103-004-5045-7  0.36
2004 Arpat AB, Waugh M, Sullivan JP, Gonzales M, Frisch D, Main D, Wood T, Leslie A, Wing RA, Wilkins TA. Functional genomics of cell elongation in developing cotton fibers. Plant Molecular Biology. 54: 911-29. PMID 15604659 DOI: 10.1007/S11103-004-0392-Y  1
2004 Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, Yu Y, Wei F, Fuks G, Soderlund CA, Mayer KF, Wing RA. Sequence composition and genome organization of maize. Proceedings of the National Academy of Sciences of the United States of America. 101: 14349-54. PMID 15388850 DOI: 10.1073/Pnas.0406163101  1
2004 Thon MR, Martin SL, Goff S, Wing RA, Dean RA. BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology : Fg & B. 41: 657-66. PMID 15275661 DOI: 10.1016/J.Fgb.2004.02.003  1
2004 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Incongruent patterns of local and global genome size evolution in cotton. Genome Research. 14: 1474-82. PMID 15256507 DOI: 10.1101/Gr.2673204  1
2004 Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S. Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor. Genetics. 167: 471-83. PMID 15166170 DOI: 10.1534/Genetics.167.1.471  1
2004 Singh NK, Raghuvanshi S, Srivastava SK, Gaur A, Pal AK, Dalal V, Singh A, Ghazi IA, Bhargav A, Yadav M, Dixit A, Batra K, Gaikwad K, Sharma TR, Mohanty A, ... ... Wing R, et al. Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny. Functional & Integrative Genomics. 4: 102-17. PMID 15085449 DOI: 10.1007/S10142-004-0109-Y  0.32
2004 Zhang Y, Huang Y, Zhang L, Li Y, Lu T, Lu Y, Feng Q, Zhao Q, Cheng Z, Xue Y, Wing RA, Han B. Structural features of the rice chromosome 4 centromere Nucleic Acids Research. 32: 2023-2030. PMID 15064362 DOI: 10.1093/Nar/Gkh521  1
2004 Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiology. 134: 960-8. PMID 15020760 DOI: 10.1104/Pp.103.034462  1
2004 Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, ... ... Wing RA, et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 166: 389-417. PMID 15020432 DOI: 10.1534/Genetics.166.1.389  0.36
2004 Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science (New York, N.Y.). 304: 304-7. PMID 15001715 DOI: 10.1126/Science.1095781  1
2004 Budiman MA, Chang SB, Lee S, Yang TJ, Zhang HB, De Jong H, Wing RA. Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping Theoretical and Applied Genetics. 108: 190-196. PMID 14504748 DOI: 10.1007/S00122-003-1429-3  1
2003 Luo M, Wing RA. An improved method for plant BAC library construction Methods in Molecular Biology (Clifton, N.J.). 236: 3-20. PMID 14501055 DOI: 10.1385/1-59259-413-1:3  1
2003 Yu Y, Rambo T, Currie J, Saski C, Kim HR, Collura K, Thompson S, Simmons J, Yang TJ, Nah G, Patel AJ, Thurmond S, Henry D, Oates R, Palmer M, ... ... Wing RA, et al. In-depth view of structure, activity, and evolution of rice chromosome 10 Science. 300: 1566-1569. PMID 12791992 DOI: 10.1126/Science.1083523  1
2003 Yang TJ, Yu Y, Nah G, Atkins M, Lee S, Frisch DA, Wing RA. Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 652-60. PMID 12783166 DOI: 10.1007/S00122-003-1302-4  1
2003 Georgi LL, Wang Y, Reighard GL, Mao L, Wing RA, Abbott AG. Comparison of peach and Arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods Genome. 46: 268-276. PMID 12723043 DOI: 10.1139/G03-004  1
2003 Senchina DS, Alvarez I, Cronn RC, Liu B, Rong J, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution. 20: 633-43. PMID 12679546 DOI: 10.1093/Molbev/Msg065  1
2002 Gemmill RM, Bolin R, Albertsen H, Tomkins JP, Wing RA. Pulsed-field gel electrophoresis for long-range restriction mapping. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit5.1. PMID 18428330 DOI: 10.1002/0471142905.Hg0501S31  1
2002 Cone KC, McMullen MD, Bi IV, Davis GL, Yim YS, Gardiner JM, Polacco ML, Sanchez-Villeda H, Fang Z, Schroeder SG, Havermann SA, Bowers JE, Paterson AH, Soderlund CA, Engler FW, Wing RA, et al. Genetic, physical, and informatics resources for maize. On the road to an integrated map. Plant Physiology. 130: 1598-605. PMID 12481043 DOI: 10.1104/Pp.012245  0.36
2002 Cheng Z, Buell CR, Wing RA, Jiang J. Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers Chromosome Research. 10: 379-387. PMID 12296520 DOI: 10.1023/A:1016849618707  1
2002 Wei F, Wing RA, Wise RP. Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. The Plant Cell. 14: 1903-17. PMID 12172030 DOI: 10.1105/Tpc.002238  1
2002 Jiang N, Bao Z, Temnykh S, Cheng Z, Jiang J, Wing RA, McCouch SR, Wessler SR. Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics. 161: 1293-305. PMID 12136031  1
2002 Zhao Q, Zhang Y, Cheng Z, Chen M, Wang S, Feng Q, Huang Y, Li Y, Tang Y, Zhou B, Chen Z, Yu S, Zhu J, Hu X, Mu J, ... ... Wing R, et al. A fine physical map of the rice chromosome 4. Genome Research. 12: 817-23. PMID 11997348 DOI: 10.1101/Gr.48902  0.84
2002 Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Wing RA, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/Tpc.010485  1
2002 Wechter WP, Begum D, Presting G, Kim JJ, Wing RA, Kluepfel DA. Physical mapping, BAC-end sequence analysis, and marker tagging of the soilborne nematicidal bacterium, Pseudomonas synxantha BG33R. Omics : a Journal of Integrative Biology. 6: 11-21. PMID 11881828 DOI: 10.1089/15362310252780807  1
2002 Coe E, Cone K, McMullen M, Chen SS, Davis G, Gardiner J, Liscum E, Polacco M, Paterson A, Sanchez-Villeda H, Soderlund C, Wing R. Access to the maize genome: an integrated physical and genetic map. Plant Physiology. 128: 9-12. PMID 11788746 DOI: 10.1104/pp.128.1.9  1
2002 Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research. 30: 121-4. PMID 11752272 DOI: 10.1093/Nar/30.1.121  1
2001 Cheng Z, Buell CR, Wing RA, Gu M, Jiang J. Toward a cytological characterization of the rice genome Genome Research. 11: 2133-2141. PMID 11731505 DOI: 10.1101/Gr.194601  1
2001 Martinez B, Tomkins J, Wackett LP, Wing R, Sadowsky MJ. Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. Journal of Bacteriology. 183: 5684-97. PMID 11544232 DOI: 10.1128/Jb.183.19.5684-5697.2001  1
2001 Tomkins JP, Wood TC, Stacey MG, Loh JT, Judd A, Goicoechea JL, Stacey G, Sadowsky MJ, Wing RA. A marker-dense physical map of the Bradyrhizobium japonicum genome. Genome Research. 11: 1434-40. PMID 11483585 DOI: 10.1101/Gr.185001  1
2001 Mao L, Begum D, Goff SA, Wing RA. Sequence and analysis of the tomato JOINTLESS locus. Plant Physiology. 126: 1331-40. PMID 11457984 DOI: 10.1104/Pp.126.3.1331  1
2001 Yang ZN, Ye XR, Choi S, Molina J, Moonan F, Wing RA, Roose ML, Mirkov TE. Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf Genome. 44: 382-393. PMID 11444697 DOI: 10.1139/Gen-44-3-382  1
2001 Presting GG, Budiman MA, Wood T, Yu Y, Kim HR, Goicoechea JL, Fang E, Blackman B, Jiang J, Woo SS, Dean RA, Frisch D, Wing RA. A framework for sequencing the rice genome. Novartis Foundation Symposium. 236: 13-24; discussion 24. PMID 11387975 DOI: 10.1002/9780470515778.Ch3  1
2001 Wang W, Zhai W, Luo M, Jiang G, Chen X, Li X, Wing RA, Zhu L. Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library Molecular and General Genetics. 265: 118-125. PMID 11370857 DOI: 10.1007/S004380000382  1
2001 Luo M, Wang YH, Frisch D, Joobeur T, Wing RA, Dean RA. Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2) Genome. 44: 154-162. PMID 11341724 DOI: 10.1139/Gen-44-2-154  1
2001 Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH. Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation. Plant Physiology. 125: 1325-41. PMID 11244113 DOI: 10.1104/Pp.125.3.1325  1
2001 Tomkins JP, Peterson DG, Yang TJ, Main D, Wilkins TA, Paterson AH, Wing RA. Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development Molecular Breeding. 8: 255-261. DOI: 10.1023/A:1013798716098  1
2001 Tomkins JP, Wood TC, Barnes LS, Westman A, Wing RA. Evaluation of genetic variation in the daylily (Hemerocallis spp.) using AFLP markers Theoretical and Applied Genetics. 102: 489-496. DOI: 10.1007/S001220051672  1
2000 Druka A, Kudrna D, Han F, Kilian A, Steffenson B, Frisch D, Tomkins J, Wing R, Kleinhofs A. Physical mapping of the barley stem rust resistance genie rpg4 Molecular and General Genetics. 264: 283-290. PMID 11085268 DOI: 10.1007/S004380000320  1
2000 Mao L, Begum D, Chuang HW, Budiman MA, Szymkowiak EJ, Irish EE, Wing RA. JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development Nature. 406: 910-913. PMID 10972295 DOI: 10.1038/35022611  1
2000 Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA. Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Research. 10: 982-90. PMID 10899147 DOI: 10.1101/Gr.10.7.982  1
2000 Lin YR, Draye X, Qian X, Ren S, Zhu LH, Tomkins J, Wing RA, Li Z, Paterson AH. Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method Nucleic Acids Research. 28: E23. PMID 10710440 DOI: 10.1093/Nar/28.7.E23  1
2000 Choi S, Begum D, Koshinsky H, Ow DW, Wing RA. A new approach for the identification and cloning of genes: the pBACwich system using Cre/lox site-specific recombination Nucleic Acids Research. 28: E19. PMID 10710436 DOI: 10.1093/Nar/28.7.E19  1
2000 Yu Y, Tomkins JP, Waugh R, Frisch DA, Kudrna D, Kleinhofs A, Brueggeman RS, Muehlbauer GJ, Wise RP, Wing RA. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes Theoretical and Applied Genetics. 101: 1093-1099. DOI: 10.1007/S001220051584  1
2000 Zhang HB, Budiman MA, Wing RA. Genetic mapping of jointless-2 to tomato chromosome 12 using RFLP and RAPD markers Theoretical and Applied Genetics. 100: 1183-1189. DOI: 10.1007/S001220051422  1
1999 Tomkins JP, Yu Y, Miller-Smith H, Frisch DA, Woo SS, Wing RA. A bacterial artificial chromosome library for sugarcane. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 99: 419-24. PMID 22665173 DOI: 10.1007/S001220051252  1
1999 Tomkins JP, Miller-Smith H, Sasinowski M, Choi S, Sasinowska H, Verce MF, Freedman DL, Dean RA, Wing RA. Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs Microbial and Comparative Genomics. 4: 203-217. PMID 10587947 DOI: 10.1089/Omi.1.1999.4.203  1
1999 Tomkins JP, Mahalingam R, Smith H, Goicoechea JL, Knap HT, Wing RA. A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance Plant Molecular Biology. 41: 25-32. PMID 10561065 DOI: 10.1023/A:1006277417789  1
1999 Tomkins JP, Yu Y, Miller-Smith H, Frisch DA, Woo SS, Wing RA. A bacterial artificial chromosome library for sugarcane Theoretical and Applied Genetics. 99: 419-424. DOI: 10.1007/s001220051252  1
1998 Huang YF, Jordan WR, Wing RA, Morgan PW. Gene expression induced by physical impedance in maize roots. Plant Molecular Biology. 37: 921-30. PMID 9700065 DOI: 10.1023/A:1006034411529  1
1998 Gómez MI, Islam-Faridi MN, Zwick MS, Czeschin DG, Hart GE, Wing RA, Stelly DM, Price HJ. Tetraploid nature of Sorghum bicolor (L.) Moench Journal of Heredity. 89: 188-190. DOI: 10.1093/Jhered/89.2.188  1
1998 Miller JT, Jackson SA, Nasuda S, Gill BS, Wing RA, Jiang J. Cloning and characterization of a centromere-specific repetitive DNA element from Sorghum bicolor Theoretical and Applied Genetics. 96: 832-839. DOI: 10.1007/S001220050809  1
1997 Gómez MI, Islam-Faridi MN, Woo SS, Czeschin D, Zwick MS, Stelly DM, Price HJ, Schertz KF, Wing RA. FISH of a maize sh2-selected sorghum BAC to chromosomes of Sorghum bicolor. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 40: 475-8. PMID 18464840 DOI: 10.1139/G97-063  0.52
1997 Zhu H, Choi S, Johnston AK, Wing RA, Dean RA. A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning Fungal Genetics and Biology. 21: 337-347. PMID 9290247 DOI: 10.1006/Fgbi.1997.0996  1
1997 Chen M, Sanmiguel P, De Oliveira AC, Woo SS, Zhang H, Wing RA, Bennetzen JL. Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes Proceedings of the National Academy of Sciences of the United States of America. 94: 3431-3435. PMID 9096411 DOI: 10.1073/Pnas.94.7.3431  1
1996 Avramova Z, Tikhonov A, SanMiguel P, Jin YK, Liu C, Woo SS, Wing RA, Bennetzen JL. Gene identification in a complex chromosomal continuum by local genomic cross-referencing Plant Journal. 10: 1163-1168. PMID 9011097 DOI: 10.1046/J.1365-313X.1996.10061163.X  1
1996 Vielle-Calzada JP, Nuccio ML, Budiman MA, Thomas TL, Burson BL, Hussey MA, Wing RA. Comparative gene expression in sexual and apomictic ovaries of Pennisetum ciliare (L.) Link Plant Molecular Biology. 32: 1085-1092. PMID 9002607 DOI: 10.1007/Bf00041392  1
1996 Jiang J, Nasuda S, Dong F, Scherrer CW, Woo SS, Wing RA, Gill BS, Ward DC. A conserved repetitive DNA element located in the centromeres of cereal chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 93: 14210-3. PMID 8943086 DOI: 10.1073/Pnas.93.24.14210  1
1995 Cai L, Taylor JF, Wing RA, Gallagher DS, Woo SS, Davis SK. Construction and characterization of a bovine bacterial artificial chromosome library. Genomics. 29: 413-25. PMID 8666390 DOI: 10.1006/Geno.1995.9986  1
1995 Zhao Xinping, Wing RA, Paterson AH. Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.) Genome. 38: 1177-1188. PMID 8654914 DOI: 10.1139/G95-156  1
1995 Choi S, Creelman RA, Mullet JE, Wing RA. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana Plant Molecular Biology Reporter. 13: 124-128. DOI: 10.1007/Bf02668782  1
1995 Woo SS, Rastogi VK, Zhang HB, Paterson AH, Schertz KF, Wing RA. Isolation of megabase-size DNA from sorghum and applications for physical mapping and bacterial and yeast artificial chromosome library construction Plant Molecular Biology Reporter. 13: 82-94. DOI: 10.1007/Bf02668396  1
1994 Zhang HB, Martin GB, Tanksley SD, Wing RA. Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus. Molecular & General Genetics : Mgg. 244: 613-21. PMID 7969030 DOI: 10.1007/Bf00282751  1
1994 Wing RA, Zhang HB, Tanksley SD. Map-based cloning in crop plants. Tomato as a model system: I. Genetic and physical mapping of jointless. Molecular & General Genetics : Mgg. 242: 681-8. PMID 7908716 DOI: 10.1007/Bf00283423  1
1994 Woo Ss, Jiang J, Gill BS, Paterson AH, Wing RA. Construction and characterization of bacterial artificial chromosome library of Sorghum bicolor Nucleic Acids Research. 22: 4922-4931. PMID 7800481 DOI: 10.1093/Nar/22.23.4922  1
1994 Zhao X, Zhang HB, Wing RA, Paterson AH. A simple method for isolation of megabase DNA from cotton Plant Molecular Biology Reporter. 12: 110-115. DOI: 10.1007/Bf02668372  1
1994 Chittenden LM, Schertz KF, Lin YR, Wing RA, Paterson AH. A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments Theoretical and Applied Genetics: International Journal of Plant Breeding Research. 87: 925-933. DOI: 10.1007/Bf00225786  1
1993 Wang Gl, Wing RA, Paterson AH. Pcr amplification from single seeds, facilitating DNA marker-assisted breeding Nucleic Acids Research. 21: 2527. PMID 8506153 DOI: 10.1093/Nar/21.10.2527  1
1993 Wing RA, Rastogi VK, Zhang HB, Paterson AH, Tanksley SD. An improved method of plant megabase DNA isolation in agarose microbeads suitable for physical mapping and YAC cloning. The Plant Journal : For Cell and Molecular Biology. 4: 893-8. PMID 8275106 DOI: 10.1046/J.1365-313X.1993.04050893.X  1
1993 Paterson AH, Wing RA. Genome mapping in plants Current Opinion in Biotechnology. 4: 142-147. DOI: 10.1016/0958-1669(93)90114-C  1
1991 Giovannoni JJ, Wing RA, Ganal MW, Tanksley SD. Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucleic Acids Research. 19: 6553-8. PMID 1684420 DOI: 10.1093/Nar/19.23.6553  1
1990 Wing RA, Yamaguchi J, Larabell SK, Ursin VM, McCormick S. Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia Plant Molecular Biology. 14: 17-28. PMID 1983191 DOI: 10.1007/Bf00015651  1
1988 Matoba S, Fukayama J, Wing RA, Ogrydziak DM. Intracellular precursors and secretion of alkaline extracellular protease of Yarrowia lipolytica Molecular and Cellular Biology. 8: 4904-4916. PMID 3211132 DOI: 10.1128/Mcb.8.11.4904  1
1985 Davidow LS, Apostolakos D, O'Donnell MM, Proctor AR, Ogrydziak DM, Wing RA, Stasko I, DeZeeuw JR. Integrative transformation of the yeast Yarrowia lipolytica Current Genetics. 10: 39-48. DOI: 10.1007/Bf00418492  1
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