Rod A. Wing - Publications

Clemson University, Clemson, SC, United States 
Genetics, Molecular Biology

120 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hazzouri KM, Gros-Balthazard M, Flowers JM, Copetti D, Lemansour A, Lebrun M, Masmoudi K, Ferrand S, Dhar MI, Fresquez ZA, Rosas U, Zhang J, Talag J, Lee S, Kudrna D, ... ... Wing RA, et al. Genome-wide association mapping of date palm fruit traits. Nature Communications. 10: 4680. PMID 31615981 DOI: 10.1038/s41467-019-12604-9  0.6
2019 Zhang L, Ren Y, Yang T, Li G, Chen J, Gschwend AR, Yu Y, Hou G, Zi J, Zhou R, Wen B, Zhang J, Chougule K, Wang M, Copetti D, ... ... Wing RA, et al. Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution. PMID 30858588 DOI: 10.1038/s41559-019-0822-5  0.6
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/s41588-018-0261-2  0.6
2018 Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, ... ... Wing RA, et al. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature. PMID 29695866 DOI: 10.1038/s41586-018-0063-9  0.6
2018 Kim NH, Jayakodi M, Lee SC, Choi BS, Jang W, Lee J, Kim HH, Waminal NE, Lakshmanan M, Van Nguyen B, Lee YS, Park HS, Koo HJ, Park JY, Perumal S, ... ... Wing RA, et al. Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal. PMID 29604169 DOI: 10.1111/pbi.12926  0.6
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/s41588-018-0040-0  0.6
2017 Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, ... ... Wing RA, et al. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications. 8: 1279. PMID 29093472 DOI: 10.1038/s41467-017-01064-8  0.6
2017 Copetti D, Búrquez A, Bustamante E, Charboneau JLM, Childs KL, Eguiarte LE, Lee S, Liu TL, McMahon MM, Whiteman NK, Wing RA, Wojciechowski MF, Sanderson MJ. Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078296 DOI: 10.1073/pnas.1706367114  0.32
2016 Zhang J, Chen LL, Sun S, Kudrna D, Copetti D, Li W, Mu T, Jiao WB, Xing F, Lee S, Talag J, Song JM, Du B, Xie W, Luo M, ... ... Wing RA, et al. Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data. Scientific Data. 3: 160076. PMID 27622467 DOI: 10.1038/sdata.2016.76  0.6
2016 Wicker T, Yu Y, Haberer G, Mayer KF, Marri PR, Rounsley S, Chen M, Zuccolo A, Panaud O, Wing RA, Roffler S. DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications. 7: 12790. PMID 27599761 DOI: 10.1038/ncomms12790  0.6
2016 Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, ... ... Wing RA, et al. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535938 DOI: 10.1073/pnas.1611012113  0.6
2016 Zhang J, Kudrna D, Mu T, Li W, Copetti D, Yu Y, Goicoechea JL, Lei Y, Wing RA. Genome Puzzle Master (GPM) - An integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics (Oxford, England). PMID 27318200 DOI: 10.1093/bioinformatics/btw370  0.6
2016 Wang J, Yu Y, Tao F, Zhang J, Copetti D, Kudrna D, Talag J, Lee S, Wing RA, Fan C. DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology. 17: 92. PMID 27154274 DOI: 10.1186/s13059-016-0954-8  0.6
2015 De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, ... ... Wing RA, et al. Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Scientific Reports. 5: 17394. PMID 26617401 DOI: 10.1038/srep17394  0.6
2015 Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, ... ... Wing RA, et al. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports. 5: 15655. PMID 26506948 DOI: 10.1038/srep15655  0.6
2015 Wing RA. Harvesting rice's dispensable genome. Genome Biology. 16: 217. PMID 26429765 DOI: 10.1186/s13059-015-0787-x  0.6
2015 Wicker T, Wing RA, Schubert I. Recurrent sequence exchange between homeologous grass chromosomes. The Plant Journal : For Cell and Molecular Biology. PMID 26408412 DOI: 10.1111/tpj.13040  0.6
2015 Zhang Y, Zhang S, Liu H, Fu B, Li L, Xie M, Song Y, Li X, Cai J, Wan W, Kui L, Huang H, Lyu J, Dong Y, Wang W, ... ... Wing RA, et al. Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility. Molecular Plant. PMID 26358679 DOI: 10.1016/j.molp.2015.08.006  0.6
2015 Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, ... ... Wing RA, et al. RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. Bmc Genomics. 16: 538. PMID 26194356 DOI: 10.1186/s12864-015-1762-3  0.6
2015 Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/fpls.2015.00216  0.6
2014 Geering AD, Maumus F, Copetti D, Choisne N, Zwickl DJ, Zytnicki M, McTaggart AR, Scalabrin S, Vezzulli S, Wing RA, Quesneville H, Teycheney PY. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications. 5: 5269. PMID 25381880 DOI: 10.1038/ncomms6269  0.6
2014 Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, ... ... Wing RA, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/ng.3044  0.6
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, ... ... Wing RA, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/ng.3008  0.6
2014 Zwickl DJ, Stein JC, Wing RA, Ware D, Sanderson MJ. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Systematic Biology. 63: 645-59. PMID 24721692 DOI: 10.1093/sysbio/syu027  0.6
2014 Wang X, Kudrna DA, Pan Y, Wang H, Liu L, Lin H, Zhang J, Song X, Goicoechea JL, Wing RA, Zhang Q, Luo M. Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping. Genetics. 196: 937-49. PMID 24424778 DOI: 10.1534/genetics.113.159970  0.6
2014 Pan Y, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M. Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. The Plant Journal : For Cell and Molecular Biology. 77: 795-805. PMID 24330235 DOI: 10.1111/tpj.12412  0.6
2014 Jacquemin J, Ammiraju JS, Haberer G, Billheimer DD, Yu Y, Liu LC, Rivera LF, Mayer K, Chen M, Wing RA. Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion. Molecular Plant. 7: 642-56. PMID 24214894 DOI: 10.1093/mp/sst149  0.6
2014 Ortiz M, Legatzki A, Neilson JW, Fryslie B, Nelson WM, Wing RA, Soderlund CA, Pryor BM, Maier RM. Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. The Isme Journal. 8: 478-91. PMID 24030597 DOI: 10.1038/ismej.2013.159  0.6
2013 Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (New York, N.Y.). 342: 1516-7. PMID 24357320 DOI: 10.1126/science.1241130  0.6
2013 Wang C, Shi X, Liu L, Li H, Ammiraju JS, Kudrna DA, Xiong W, Wang H, Dai Z, Zheng Y, Lai J, Jin W, Messing J, Bennetzen JL, Wing RA, et al. Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics. 195: 723-37. PMID 24037269 DOI: 10.1534/genetics.113.157115  0.6
2013 Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, ... ... Wing RA, et al. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature. 500: 335-9. PMID 23883927 DOI: 10.1038/nature12309  0.6
2013 Matsuba Y, Nguyen TTH, Wiegert K, Falara V, Gonzales-Vigil E, Leong B, Schäfer P, Kudrna D, Wing RA, Bolger AM, Usadel B, Tissier A, Fernie AR, Barry CS, Pichersky E. Evolution of a complex locus for terpene biosynthesis in Solanum Plant Cell. 25: 2022-2036. PMID 23757397 DOI: 10.1105/tpc.113.111013  0.6
2013 Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/gbe/evt071  0.6
2013 Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. The Reference Genome of the Halophytic Plant Eutrema salsugineum. Frontiers in Plant Science. 4: 46. PMID 23518688 DOI: 10.3389/fpls.2013.00046  0.6
2013 Jacquemin J, Bhatia D, Singh K, Wing RA. The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology. 16: 147-56. PMID 23518283 DOI: 10.1016/j.pbi.2013.02.014  0.6
2013 Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, ... ... Wing RA, et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications. 4: 1595. PMID 23481403 DOI: 10.1038/ncomms2596  0.6
2013 Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/pnas.1220766110  0.6
2013 Koo HJ, McDowell ET, Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR. Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. Bmc Plant Biology. 13: 27. PMID 23410187 DOI: 10.1186/1471-2229-13-27  0.6
2013 Ortiz M, Neilson JW, Nelson WM, Legatzki A, Byrne A, Yu Y, Wing RA, Soderlund CA, Pryor BM, Pierson LS, Maier RM. Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ. Microbial Ecology. 65: 371-83. PMID 23224253 DOI: 10.1007/s00248-012-0143-6  0.6
2012 Yang L, Liu T, Li B, Sui Y, Chen J, Shi J, Wing RA, Chen M. Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes. Plos One. 7: e50236. PMID 23185584 DOI: 10.1371/journal.pone.0050236  0.6
2012 Neilson JW, Quade J, Ortiz M, Nelson WM, Legatzki A, Tian F, LaComb M, Betancourt JL, Wing RA, Soderlund CA, Maier RM. Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile. Extremophiles : Life Under Extreme Conditions. 16: 553-66. PMID 22527047 DOI: 10.1007/s00792-012-0454-z  0.6
2012 Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA. Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.). G3 (Bethesda, Md.). 2: 321-9. PMID 22413085 DOI: 10.1534/g3.111.001834  0.6
2012 Li HJ, Li XH, Xiao JH, Wing RA, Wang SP. Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice. Molecular Plant. 5: 281-90. PMID 21930802 DOI: 10.1093/mp/ssr079  0.6
2011 Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/tpc.111.085605  0.6
2011 Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, ... ... Wing RA, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/gb-2011-12-5-r48  0.6
2011 Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA. Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. Bmc Genomics. 12: 142. PMID 21385395 DOI: 10.1186/1471-2164-12-142  0.6
2011 Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J. Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. Bmc Genomics. 12: 137. PMID 21375742 DOI: 10.1186/1471-2164-12-137  0.6
2011 Song X, Goicoechea JL, Ammiraju JS, Luo M, He R, Lin J, Lee SJ, Sisneros N, Watts T, Kudrna DA, Golser W, Ashley E, Collura K, Braidotti M, Yu Y, ... ... Wing RA, et al. The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. Genetics. 187: 1023-30. PMID 21321134 DOI: 10.1534/genetics.111.126540  0.6
2011 Lin J, Kudrna D, Wing RA. Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine & Biotechnology. 2011: 476723. PMID 21234344 DOI: 10.1155/2011/476723  0.6
2010 Febrer M, Goicoechea JL, Wright J, McKenzie N, Song X, Lin J, Collura K, Wissotski M, Yu Y, Ammiraju JS, Wolny E, Idziak D, Betekhtin A, Kudrna D, Hasterok R, ... Wing RA, et al. An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research. Plos One. 5: e13461. PMID 20976139 DOI: 10.1371/journal.pone.0013461  0.6
2010 Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, Ware D, Wing RA, Stein L. Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 990-1003. PMID 20626650 DOI: 10.1111/j.1365-313X.2010.04293.x  0.6
2010 Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, ... ... Wing RA, et al. A draft physical map of a D-genome cotton species (Gossypium raimondii). Bmc Genomics. 11: 395. PMID 20569427 DOI: 10.1186/1471-2164-11-395  0.6
2010 Geraldes A, Rambo T, Wing RA, Ferrand N, Nachman MW. Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution. 27: 2437-40. PMID 20525900 DOI: 10.1093/molbev/msq139  0.6
2010 Sanyal A, Ammiraju JS, Lu F, Yu Y, Rambo T, Currie J, Kollura K, Kim HR, Chen J, Ma J, San Miguel P, Mingsheng C, Wing RA, Jackson SA. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Molecular Biology and Evolution. 27: 2487-506. PMID 20522726 DOI: 10.1093/molbev/msq133  0.6
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, ... ... Wing RA, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/j.1365-313X.2010.04251.x  0.6
2010 Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL. Genomic structure and evolution of the Pi2/9 locus in wild rice species. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 295-309. PMID 20229250 DOI: 10.1007/s00122-010-1310-0  0.6
2010 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Wing RA, et al. Genome sequence of the palaeopolyploid soybean. Nature. 463: 178-83. PMID 20075913 DOI: 10.1038/nature08670  0.6
2009 Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA. Species trees from highly incongruent gene trees in rice. Systematic Biology. 58: 489-500. PMID 20525603 DOI: 10.1093/sysbio/syp054  0.6
2009 Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, et al. A single molecule scaffold for the maize genome. Plos Genetics. 5: e1000711. PMID 19936062 DOI: 10.1371/journal.pgen.1000711  0.6
2009 Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, ... ... Wing RA, et al. The physical and genetic framework of the maize B73 genome. Plos Genetics. 5: e1000715. PMID 19936061 DOI: 10.1371/journal.pgen.1000715  0.6
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Wing RA, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/journal.pgen.1000728  0.6
2009 Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/j.1365-313X.2009.04005.x  0.6
2009 Nah G, Pagliarulo CL, Mohr PG, Luo M, Sisneros N, Yu Y, Collura K, Currie J, Goicoechea JL, Wing RA, Schumaker KS. Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana. Genomics. 94: 196-203. PMID 19481598 DOI: 10.1016/j.ygeno.2009.05.007  0.6
2009 Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA. Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proceedings of the National Academy of Sciences of the United States of America. 106: 9063-8. PMID 19451630 DOI: 10.1073/pnas.0900194106  0.6
2009 Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 2071-6. PMID 19164767 DOI: 10.1073/pnas.0812798106  0.6
2008 Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant. 1: 839-50. PMID 19825586 DOI: 10.1093/mp/ssn050  0.6
2008 Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, et al. Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. Bmc Genomics. 9: 621. PMID 19099592 DOI: 10.1186/1471-2164-9-621  0.6
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, ... ... Wing RA, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/tpc.108.063727  0.6
2008 Wei F, Wing RA. A fruitful outcome to the papaya genome project. Genome Biology. 9: 227. PMID 18557995 DOI: 10.1186/gb-2008-9-6-227  0.6
2008 Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF. A phylogenetic analysis of indel dynamics in the cotton genus. Molecular Biology and Evolution. 25: 1415-28. PMID 18400789 DOI: 10.1093/molbev/msn085  0.6
2008 Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/gb-2008-9-3-402  0.6
2008 Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, ... ... Wing RA, et al. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biology. 9: R45. PMID 18304353 DOI: 10.1186/gb-2008-9-2-r45  0.6
2008 Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, ... ... Wing RA, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research. 36: D1028-33. PMID 18089549 DOI: 10.1093/nar/gkm978  0.6
2008 Roulin A, Piegu B, Wing RA, Panaud O. Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 53: 950-9. PMID 18088314 DOI: 10.1111/j.1365-313X.2007.03388.x  0.6
2007 Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 52: 342-51. PMID 17764506 DOI: 10.1111/j.1365-313X.2007.03242.x  0.6
2007 Zuccolo A, Sebastian A, Talag J, Yu Y, Kim H, Collura K, Kudrna D, Wing RA. Transposable element distribution, abundance and role in genome size variation in the genus Oryza. Bmc Evolutionary Biology. 7: 152. PMID 17727727 DOI: 10.1186/1471-2148-7-152  0.6
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Evolutionary history and positional shift of a rice centromere. Genetics. 177: 1217-20. PMID 17660534 DOI: 10.1534/genetics.107.078709  0.6
2007 Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, ... ... Wing RA, et al. Physical and genetic structure of the maize genome reflects its complex evolutionary history. Plos Genetics. 3: e123. PMID 17658954 DOI: 10.1371/journal.pgen.0030123  0.6
2007 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). The Plant Journal : For Cell and Molecular Biology. 50: 995-1006. PMID 17461788 DOI: 10.1111/j.1365-313X.2007.03102.x  0.6
2007 Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA. Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics. 176: 379-90. PMID 17339227 DOI: 10.1534/genetics.106.068783  0.6
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics : Tig. 23: 134-9. PMID 17275131 DOI: 10.1016/j.tig.2007.01.004  0.6
2007 Nelson WM, Dvorak J, Luo MC, Messing J, Wing RA, Soderlund C. Efficacy of clone fingerprinting methodologies. Genomics. 89: 160-5. PMID 17011744 DOI: 10.1016/j.ygeno.2006.08.008  0.6
2006 Adema CM, Luo MZ, Hanelt B, Hertel LA, Marshall JJ, Zhang SM, DeJong RJ, Kim HR, Kudrna D, Wing RA, Soderlund C, Knight M, Lewis FA, Caldeira RL, Jannotti-Passos LK, et al. A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. MemóRias Do Instituto Oswaldo Cruz. 101: 167-77. PMID 17308766  0.6
2006 Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research. 16: 1262-9. PMID 16963705 DOI: 10.1101/gr.5290206  0.6
2006 Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research. 16: 1252-61. PMID 16954538 DOI: 10.1101/gr.5282906  0.6
2006 Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, ... ... Wing RA, et al. Uneven chromosome contraction and expansion in the maize genome. Genome Research. 16: 1241-51. PMID 16902087 DOI: 10.1101/gr.5338906  0.6
2006 Cunningham C, Hikima J, Jenny MJ, Chapman RW, Fang GC, Saski C, Lundqvist ML, Wing RA, Cupit PM, Gross PS, Warr GW, Tomkins JP. New resources for marine genomics: bacterial artificial chromosome libraries for the Eastern and Pacific oysters (Crassostrea virginica and C. gigas). Marine Biotechnology (New York, N.Y.). 8: 521-33. PMID 16896533 DOI: 10.1007/s10126-006-6013-9  0.6
2006 Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, ... ... Wing RA, et al. Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. Bmc Genomics. 7: 199. PMID 16895597 DOI: 10.1186/1471-2164-7-199  0.6
2006 Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/tpc.106.043794  0.6
2006 Luo M, Kim H, Kudrna D, Sisneros NB, Lee SJ, Mueller C, Collura K, Zuccolo A, Buckingham EB, Grim SM, Yanagiya K, Inoko H, Shiina T, Flajnik MF, Wing RA, et al. Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. Bmc Genomics. 7: 106. PMID 16672057 DOI: 10.1186/1471-2164-7-106  0.6
2006 Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, ... ... Wing RA, et al. The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research. 16: 140-7. PMID 16344555 DOI: 10.1101/gr.3766306  0.6
2006 Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP. Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region. Genomics. 87: 181-90. PMID 16321505 DOI: 10.1016/j.ygeno.2005.09.005  0.6
2005 Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, Fuks G, Butler E, Wing RA, Rounsley S, Birren B, Nusbaum C, Mayer KF, Messing J. Structure and architecture of the maize genome. Plant Physiology. 139: 1612-24. PMID 16339807 DOI: 10.1104/pp.105.068718  0.6
2005 Kumar CS, Wing RA, Sundaresan V. Efficient insertional mutagenesis in rice using the maize En/Spm elements. The Plant Journal : For Cell and Molecular Biology. 44: 879-92. PMID 16297077 DOI: 10.1111/j.1365-313X.2005.02570.x  0.6
2005 Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, et al. The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology. 59: 53-62. PMID 16217601 DOI: 10.1007/s11103-004-6237-x  0.6
2005 Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA. Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 1596-607. PMID 16200416 DOI: 10.1007/s00122-005-0091-3  0.6
2005 Nelson WM, Bharti AK, Butler E, Wei F, Fuks G, Kim H, Wing RA, Messing J, Soderlund C. Whole-genome validation of high-information-content fingerprinting. Plant Physiology. 139: 27-38. PMID 16166258 DOI: 10.1104/pp.105.061978  0.6
2005 Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, ... ... Wing RA, et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Research. 15: 1284-91. PMID 16109971 DOI: 10.1101/gr.3869505  0.6
2005 Yang TJ, Lee S, Chang SB, Yu Y, de Jong H, Wing RA. In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons. Chromosoma. 114: 103-17. PMID 15965704 DOI: 10.1007/s00412-005-0342-8  0.6
2005 Yang TJ, Yu Y, Chang SB, de Jong H, Oh CS, Ahn SN, Fang E, Wing RA. Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 467-78. PMID 15965650 DOI: 10.1007/s00122-005-2034-4  0.6
2005 Wang W, Tanurdzic M, Luo M, Sisneros N, Kim HR, Weng JK, Kudrna D, Mueller C, Arumuganathan K, Carlson J, Chapple C, de Pamphilis C, Mandoli D, Tomkins J, Wing RA, et al. Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. Bmc Plant Biology. 5: 10. PMID 15955246 DOI: 10.1186/1471-2229-5-10  0.6
2005 Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology. 138: 105-15. PMID 15888683 DOI: 10.1104/pp.104.055624  0.6
2004 Arpat AB, Waugh M, Sullivan JP, Gonzales M, Frisch D, Main D, Wood T, Leslie A, Wing RA, Wilkins TA. Functional genomics of cell elongation in developing cotton fibers. Plant Molecular Biology. 54: 911-29. PMID 15604659 DOI: 10.1007/s11103-004-0392-y  0.6
2004 Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, Yu Y, Wei F, Fuks G, Soderlund CA, Mayer KF, Wing RA. Sequence composition and genome organization of maize. Proceedings of the National Academy of Sciences of the United States of America. 101: 14349-54. PMID 15388850 DOI: 10.1073/pnas.0406163101  0.6
2004 Thon MR, Martin SL, Goff S, Wing RA, Dean RA. BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology : Fg & B. 41: 657-66. PMID 15275661 DOI: 10.1016/j.fgb.2004.02.003  0.6
2004 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Incongruent patterns of local and global genome size evolution in cotton. Genome Research. 14: 1474-82. PMID 15256507 DOI: 10.1101/gr.2673204  0.6
2004 Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S. Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor. Genetics. 167: 471-83. PMID 15166170 DOI: 10.1534/genetics.167.1.471  0.6
2004 Zhang Y, Huang Y, Zhang L, Li Y, Lu T, Lu Y, Feng Q, Zhao Q, Cheng Z, Xue Y, Wing RA, Han B. Structural features of the rice chromosome 4 centromere Nucleic Acids Research. 32: 2023-2030. PMID 15064362 DOI: 10.1093/nar/gkh521  0.6
2004 Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiology. 134: 960-8. PMID 15020760 DOI: 10.1104/pp.103.034462  0.6
2004 Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science (New York, N.Y.). 304: 304-7. PMID 15001715 DOI: 10.1126/science.1095781  0.6
2003 Luo M, Wing RA. An improved method for plant BAC library construction Methods in Molecular Biology (Clifton, N.J.). 236: 3-20. PMID 14501055  0.6
2003 Yang TJ, Yu Y, Nah G, Atkins M, Lee S, Frisch DA, Wing RA. Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 652-60. PMID 12783166 DOI: 10.1007/s00122-003-1302-4  0.6
2003 Georgi LL, Wang Y, Reighard GL, Mao L, Wing RA, Abbott AG. Comparison of peach and Arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods Genome. 46: 268-276. PMID 12723043 DOI: 10.1139/g03-004  0.6
2003 Senchina DS, Alvarez I, Cronn RC, Liu B, Rong J, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution. 20: 633-43. PMID 12679546 DOI: 10.1093/molbev/msg065  0.6
2002 Gemmill RM, Bolin R, Albertsen H, Tomkins JP, Wing RA. Pulsed-field gel electrophoresis for long-range restriction mapping. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit5.1. PMID 18428330 DOI: 10.1002/0471142905.hg0501s31  0.6
2002 Cheng Z, Buell CR, Wing RA, Jiang J. Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers Chromosome Research. 10: 379-387. PMID 12296520 DOI: 10.1023/A:1016849618707  0.6
2002 Wei F, Wing RA, Wise RP. Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. The Plant Cell. 14: 1903-17. PMID 12172030 DOI: 10.1105/tpc.002238  0.6
2002 Jiang N, Bao Z, Temnykh S, Cheng Z, Jiang J, Wing RA, McCouch SR, Wessler SR. Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics. 161: 1293-305. PMID 12136031  0.6
2002 Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Wing RA, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/tpc.010485  0.6
2002 Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research. 30: 121-4. PMID 11752272  0.6
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