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James M. Holton, Ph.D. - Publications

Affiliations: 
2001 University of California, Berkeley, Berkeley, CA, United States 
Area:
host-pathogen interactions, motions in proteins
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63/118 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wolff AM, Nango E, Young ID, Brewster AS, Kubo M, Nomura T, Sugahara M, Owada S, Barad BA, Ito K, Bhowmick A, Carbajo S, Hino T, Holton JM, Im D, et al. Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography. Nature Chemistry. PMID 37723259 DOI: 10.1038/s41557-023-01329-4  0.511
2023 Madani A, Krause B, Greene ER, Subramanian S, Mohr BP, Holton JM, Olmos JL, Xiong C, Sun ZZ, Socher R, Fraser JS, Naik N. Large language models generate functional protein sequences across diverse families. Nature Biotechnology. PMID 36702895 DOI: 10.1038/s41587-022-01618-2  0.452
2022 Correy GJ, Kneller DW, Phillips G, Pant S, Russi S, Cohen AE, Meigs G, Holton JM, Gahbauer S, Thompson MC, Ashworth A, Coates L, Kovalevsky A, Meilleur F, Fraser JS. The mechanisms of catalysis and ligand binding for the SARS-CoV-2 NSP3 macrodomain from neutron and x-ray diffraction at room temperature. Science Advances. 8: eabo5083. PMID 35622909 DOI: 10.1126/sciadv.abo5083  0.536
2022 Correy GJ, Kneller DW, Phillips G, Pant S, Russi S, Cohen AE, Meigs G, Holton JM, Gahbauer S, Thompson MC, Ashworth A, Coates L, Kovalevsky A, Meilleur F, Fraser JS. The mechanisms of catalysis and ligand binding for the SARS-CoV-2 NSP3 macrodomain from neutron and X-ray diffraction at room temperature. Biorxiv : the Preprint Server For Biology. PMID 35169801 DOI: 10.1101/2022.02.07.479477  0.532
2021 Schuller M, Correy GJ, Gahbauer S, Fearon D, Wu T, Díaz RE, Young ID, Carvalho Martins L, Smith DH, Schulze-Gahmen U, Owens TW, Deshpande I, Merz GE, Thwin AC, Biel JT, ... ... Holton JM, et al. Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Science Advances. 7. PMID 33853786 DOI: 10.1126/sciadv.abf8711  0.514
2020 Schuller M, Correy GJ, Gahbauer S, Fearon D, Wu T, Díaz RE, Young ID, Martins LC, Smith DH, Schulze-Gahmen U, Owens TW, Deshpande I, Merz GE, Thwin AC, Biel JT, ... ... Holton JM, et al. Fragment Binding to the Nsp3 Macrodomain of SARS-CoV-2 Identified Through Crystallographic Screening and Computational Docking. Biorxiv : the Preprint Server For Biology. PMID 33269349 DOI: 10.1101/2020.11.24.393405  0.516
2020 de la Mora E, Coquelle N, Bury CS, Rosenthal M, Holton JM, Carmichael I, Garman EF, Burghammer M, Colletier JP, Weik M. Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperatures. Proceedings of the National Academy of Sciences of the United States of America. PMID 32047034 DOI: 10.1073/Pnas.1821522117  0.342
2019 Bruning JM, Wang Y, Oltrabella F, Tian B, Kholodar SA, Liu H, Bhattacharya P, Guo S, Holton JM, Fletterick RJ, Jacobson MP, England PM. Covalent Modification and Regulation of the Nuclear Receptor Nurr1 by a Dopamine Metabolite. Cell Chemical Biology. PMID 30853418 DOI: 10.1016/J.Chembiol.2019.02.002  0.306
2019 Holton JM. Challenge data set for macromolecular multi-microcrystallography. Acta Crystallographica. Section D, Structural Biology. 75: 113-122. PMID 30821701 DOI: 10.1107/S2059798319001426  0.353
2017 Knott GJ, East-Seletsky A, Cofsky JC, Holton JM, Charles E, O'Connell MR, Doudna JA. Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme. Nature Structural & Molecular Biology. PMID 28892041 DOI: 10.1038/Nsmb.3466  0.322
2017 Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Batyuk A, Ciftci H, Guillet S, Hayes MJ, Hayes B, Lane TJ, Liang M, Lundström U, ... ... Holton JM, et al. Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin. Scientific Data. 4: 170055. PMID 28440794 DOI: 10.1038/Sdata.2017.55  0.353
2016 Hunter MS, Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Ciftci H, Guillet S, Hayes MJ, Lane TJ, Liang M, Lundström U, Koglin JE, ... ... Holton JM, et al. Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser. Nature Communications. 7: 13388. PMID 27811937 DOI: 10.1038/Ncomms13388  0.374
2016 Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Zhou Q, Zhao M, Brewster AS, Michels-Clark T, Holton JM, Sauter NK, Weis WI, Brunger AT. Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. Elife. 5. PMID 27731796 DOI: 10.7554/Elife.18740  0.378
2016 Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Zhou Q, Zhao M, Brewster AS, Michels-Clark T, Holton JM, Sauter NK, Weis WI, Brunger AT. Author response: Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex Elife. DOI: 10.7554/Elife.18740.027  0.379
2015 Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, et al. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. Elife. 4. PMID 26422513 DOI: 10.7554/Elife.07574  0.584
2015 Rosenberg OS, Dovala D, Li X, Connolly L, Bendebury A, Finer-Moore J, Holton J, Cheng Y, Stroud RM, Cox JS. Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion. Cell. 161: 501-12. PMID 25865481 DOI: 10.1016/J.Cell.2015.03.040  0.363
2015 Bunkóczi G, McCoy AJ, Echols N, Grosse-Kunstleve RW, Adams PD, Holton JM, Read RJ, Terwilliger TC. Macromolecular X-ray structure determination using weak, single-wavelength anomalous data. Nature Methods. 12: 127-30. PMID 25532136 DOI: 10.1038/Nmeth.3212  0.392
2015 Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Benschoten AHV, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, et al. Author response: Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography Elife. DOI: 10.7554/Elife.07574.055  0.491
2014 Cohen AE, Soltis SM, González A, Aguila L, Alonso-Mori R, Barnes CO, Baxter EL, Brehmer W, Brewster AS, Brunger AT, Calero G, Chang JF, Chollet M, Ehrensberger P, Eriksson TL, ... ... Holton JM, et al. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences of the United States of America. 111: 17122-7. PMID 25362050 DOI: 10.1073/Pnas.1418733111  0.398
2014 Holton JM, Classen S, Frankel KA, Tainer JA. The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures. The Febs Journal. 281: 4046-60. PMID 25040949 DOI: 10.1111/Febs.12922  0.331
2014 Mavrici D, Marakalala MJ, Holton JM, Prigozhin DM, Gee CL, Zhang YJ, Rubin EJ, Alber T. Mycobacterium tuberculosis FtsX extracellular domain activates the peptidoglycan hydrolase, RipC. Proceedings of the National Academy of Sciences of the United States of America. 111: 8037-42. PMID 24843173 DOI: 10.1073/Pnas.1321812111  0.611
2014 Lang PT, Holton JM, Fraser JS, Alber T. Protein structural ensembles are revealed by redefining X-ray electron density noise Proceedings of the National Academy of Sciences of the United States of America. 111: 237-242. PMID 24363322 DOI: 10.1073/Pnas.1302823110  0.693
2014 Holton J. Promises and pitfalls of In-situ diffraction Acta Crystallographica Section a Foundations and Advances. 70: C1140-C1140. DOI: 10.1107/S2053273314088597  0.381
2013 Zeldin OB, Brockhauser S, Bremridge J, Holton JM, Garman EF. Predicting the X-ray lifetime of protein crystals. Proceedings of the National Academy of Sciences of the United States of America. 110: 20551-6. PMID 24297937 DOI: 10.1073/Pnas.1315879110  0.348
2013 White TA, Barty A, Stellato F, Holton JM, Kirian RA, Zatsepin NA, Chapman HN. Crystallographic data processing for free-electron laser sources. Acta Crystallographica. Section D, Biological Crystallography. 69: 1231-40. PMID 23793149 DOI: 10.1107/S0907444913013620  0.317
2013 Janowski PA, Cerutti DS, Holton J, Case DA. Peptide crystal simulations reveal hidden dynamics. Journal of the American Chemical Society. 135: 7938-48. PMID 23631449 DOI: 10.1021/Ja401382Y  0.344
2013 Classen S, Hura GL, Holton JM, Rambo RP, Rodic I, McGuire PJ, Dyer K, Hammel M, Meigs G, Frankel KA, Tainer JA. Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source. Journal of Applied Crystallography. 46: 1-13. PMID 23396808 DOI: 10.1107/S0021889812048698  0.363
2012 Aquila A, Hunter MS, Doak RB, Kirian RA, Fromme P, White TA, Andreasson J, Arnlund D, Bajt S, Barends TR, Barthelmess M, Bogan MJ, Bostedt C, Bottin H, Bozek JD, ... ... Holton JM, et al. Time-resolved protein nanocrystallography using an X-ray free-electron laser. Optics Express. 20: 2706-16. PMID 22330507 DOI: 10.1364/Oe.20.002706  0.383
2011 Lomb L, Barends TR, Kassemeyer S, Aquila A, Epp SW, Erk B, Foucar L, Hartmann R, Rudek B, Rolles D, Rudenko A, Shoeman RL, Andreasson J, Bajt S, Barthelmess M, ... ... Holton JM, et al. Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser. Physical Review. B, Condensed Matter and Materials Physics. 84: 214111. PMID 24089594 DOI: 10.1103/Physrevb.84.214111  0.331
2011 Fraser JS, Van Den Bedem H, Samelson AJ, Lang PT, Holton JM, Echols N, Alber T. Accessing protein conformational ensembles using room-temperature X-ray crystallography Proceedings of the National Academy of Sciences of the United States of America. 108: 16247-16252. PMID 21918110 DOI: 10.1073/Pnas.1111325108  0.718
2011 Chou S, Krasileva KV, Holton JM, Steinbrenner AD, Alber T, Staskawicz BJ. Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces. Proceedings of the National Academy of Sciences of the United States of America. 108: 13323-8. PMID 21788488 DOI: 10.1073/Pnas.1109791108  0.618
2011 Spence JC, Kirian RA, Wang X, Weierstall U, Schmidt KE, White T, Barty A, Chapman HN, Marchesini S, Holton J. Phasing of coherent femtosecond X-ray diffraction from size-varying nanocrystals. Optics Express. 19: 2866-73. PMID 21369108 DOI: 10.1364/Oe.19.002866  0.318
2011 Kirian RA, White TA, Holton JM, Chapman HN, Fromme P, Barty A, Lomb L, Aquila A, Maia FR, Martin AV, Fromme R, Wang X, Hunter MS, Schmidt KE, Spence JC. Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals. Acta Crystallographica. Section a, Foundations of Crystallography. 67: 131-40. PMID 21325716 DOI: 10.1107/S0108767310050981  0.4
2011 Chapman HN, Fromme P, Barty A, White TA, Kirian RA, Aquila A, Hunter MS, Schulz J, DePonte DP, Weierstall U, Doak RB, Maia FR, Martin AV, Schlichting I, Lomb L, ... ... Holton JM, et al. Femtosecond X-ray protein nanocrystallography. Nature. 470: 73-7. PMID 21293373 DOI: 10.1038/Nature09750  0.422
2010 Lang PT, Ng HL, Fraser JS, Corn JE, Echols N, Sales M, Holton JM, Alber T. Automated electron-density sampling reveals widespread conformational polymorphism in proteins. Protein Science : a Publication of the Protein Society. 19: 1420-31. PMID 20499387 DOI: 10.1002/Pro.423  0.735
2010 Kirian RA, Wang X, Weierstall U, Schmidt KE, Spence JC, Hunter M, Fromme P, White T, Chapman HN, Holton J. Femtosecond protein nanocrystallography-data analysis methods. Optics Express. 18: 5713-23. PMID 20389587 DOI: 10.1364/Oe.18.005713  0.383
2010 Holton JM, Frankel KA. The minimum crystal size needed for a complete diffraction data set. Acta Crystallographica. Section D, Biological Crystallography. 66: 393-408. PMID 20382993 DOI: 10.1107/S0907444910007262  0.344
2009 Howells MR, Beetz T, Chapman HN, Cui C, Holton JM, Jacobsen CJ, Kirz J, Lima E, Marchesini S, Miao H, Sayre D, Shapiro DA, Spence JC, Starodub D. An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy. Journal of Electron Spectroscopy and Related Phenomena. 170: 4-12. PMID 20463854 DOI: 10.1016/J.Elspec.2008.10.008  0.33
2009 Owen RL, Holton JM, Schulze-Briese C, Garman EF. Determination of X-ray flux using silicon pin diodes. Journal of Synchrotron Radiation. 16: 143-51. PMID 19240326 DOI: 10.1107/S0909049508040429  0.306
2009 Holton JM. A beginner's guide to radiation damage. Journal of Synchrotron Radiation. 16: 133-42. PMID 19240325 DOI: 10.1107/S0909049509004361  0.326
2009 Stroud RM, Choe S, Holton J, Kaback HR, Kwiatkowski W, Minor DL, Riek R, Sali A, Stahlberg H, Harries W. 2007 annual progress report synopsis of the Center for Structures of Membrane Proteins. Journal of Structural and Functional Genomics. 10: 193-208. PMID 19148774 DOI: 10.1007/S10969-008-9058-3  0.337
2008 May A, Fowler B, Frankel K, Meigs G, Holton J. Diffraction-capable microfluidic crystallization chips for screening and structure determination Acta Crystallographica Section a Foundations of Crystallography. 64: C133-C134. DOI: 10.1107/S0108767308095706  0.35
2007 Sales M, Plecs JJ, Holton JM, Alber T. Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids. Protein Science : a Publication of the Protein Society. 16: 2224-32. PMID 17766380 DOI: 10.1110/Ps.062702907  0.619
2007 Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH. A steric block in translation caused by the antibiotic spectinomycin. Acs Chemical Biology. 2: 545-52. PMID 17696316 DOI: 10.1021/Cb700100N  0.352
2007 Borovinskaya MA, Pai RD, Zhang W, Schuwirth BS, Holton JM, Hirokawa G, Kaji H, Kaji A, Cate JH. Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nature Structural & Molecular Biology. 14: 727-32. PMID 17660832 DOI: 10.1038/Nsmb1271  0.354
2007 Howard RJ, Clark KA, Holton JM, Minor DL. Structural insight into KCNQ (Kv7) channel assembly and channelopathy. Neuron. 53: 663-75. PMID 17329207 DOI: 10.1016/J.Neuron.2007.02.010  0.359
2007 Holton JM. XANES measurements of the rate of radiation damage to selenomethionine side chains. Journal of Synchrotron Radiation. 14: 51-72. PMID 17211072 DOI: 10.1107/S0909049506048898  0.398
2006 Rho BS, Hung LW, Holton JM, Vigil D, Kim SI, Park MS, Terwilliger TC, Pédelacq JD. Functional and structural characterization of a thiol peroxidase from Mycobacterium tuberculosis. Journal of Molecular Biology. 361: 850-63. PMID 16884737 DOI: 10.1016/J.Jmb.2006.05.076  0.362
2005 Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH. Structures of the bacterial ribosome at 3.5 A resolution. Science (New York, N.Y.). 310: 827-34. PMID 16272117 DOI: 10.1126/Science.1117230  0.379
2005 Scott A, Chung HY, Gonciarz-Swiatek M, Hill GC, Whitby FG, Gaspar J, Holton JM, Viswanathan R, Ghaffarian S, Hill CP, Sundquist WI. Structural and mechanistic studies of VPS4 proteins. The Embo Journal. 24: 3658-69. PMID 16193069 DOI: 10.1038/Sj.Emboj.7600818  0.397
2005 Huang DT, Paydar A, Zhuang M, Waddell MB, Holton JM, Schulman BA. Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. Molecular Cell. 17: 341-50. PMID 15694336 DOI: 10.1016/J.Molcel.2004.12.020  0.309
2004 Lopper M, Holton JM, Keck JL. Crystal structure of PriB, a component of the Escherichia coli replication restart primosome. Structure (London, England : 1993). 12: 1967-75. PMID 15530361 DOI: 10.1016/J.Str.2004.09.004  0.374
2004 MacDowell AA, Celestre RS, Howells M, McKinney W, Krupnick J, Cambie D, Domning EE, Duarte RM, Kelez N, Plate DW, Cork CW, Earnest TN, Dickert J, Meigs G, Ralston C, ... Holton JM, et al. Suite of three protein crystallography beamlines with single superconducting bend magnet as the source. Journal of Synchrotron Radiation. 11: 447-55. PMID 15496731 DOI: 10.1107/S0909049504024835  0.601
2004 Huang DT, Miller DW, Mathew R, Cassell R, Holton JM, Roussel MF, Schulman BA. A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8. Nature Structural & Molecular Biology. 11: 927-35. PMID 15361859 DOI: 10.1038/Nsmb826  0.311
2004 Sundquist WI, Schubert HL, Kelly BN, Hill GC, Holton JM, Hill CP. Ubiquitin recognition by the human TSG101 protein. Molecular Cell. 13: 783-9. PMID 15053872 DOI: 10.1016/S1097-2765(04)00129-7  0.442
2004 Holton J, Alber T. Automated protein crystal structure determination using ELVES. Proceedings of the National Academy of Sciences of the United States of America. 101: 1537-42. PMID 14752198 DOI: 10.1073/Pnas.0306241101  0.665
2003 Walden H, Podgorski MS, Huang DT, Miller DW, Howard RJ, Minor DL, Holton JM, Schulman BA. The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Molecular Cell. 12: 1427-37. PMID 14690597 DOI: 10.1016/S1097-2765(03)00452-0  0.343
2001 Crowder S, Holton J, Alber T. Covariance analysis of RNA recognition motifs identifies functionally linked amino acids Journal of Molecular Biology. 310: 793-800. PMID 11453688 DOI: 10.1006/Jmbi.2001.4740  0.576
2001 Lougheed JC, Holton JM, Alber T, Bazan JF, Handel TM. Structure of melanoma inhibitory activity protein, a member of a recently identified family of secreted proteins. Proceedings of the National Academy of Sciences of the United States of America. 98: 5515-20. PMID 11331761 DOI: 10.1073/Pnas.091601698  0.629
2001 Rose RB, Endrizzi JA, Cronk JD, Holton J, Alber T. High-resolution structure of the HNF-1 alpha dimerization domain (vol. 39, pg. 15062, 2000) Biochemistry. 40. DOI: 10.1021/Bi0151263  0.589
2000 Rose RB, Endrizzi JA, Cronk JD, Holton J, Alber T. High-resolution structure of the HNF-1alpha dimerization domain. Biochemistry. 39: 15062-70. PMID 11106484 DOI: 10.1021/Bi001996T  0.728
2000 Glaeser R, Facciotti M, Walian P, Rouhani S, Holton J, MacDowell A, Celestre R, Cambie D, Padmore H. Characterization of conditions required for x-ray diffraction experiments with protein microcrystals Biophysical Journal. 78: 3178-3185. PMID 10827994 DOI: 10.1016/S0006-3495(00)76854-8  0.389
1999 McWhirter SM, Pullen SS, Holton JM, Crute JJ, Kehry MR, Alber T. Crystallographic analysis of CD40 recognition and signaling by human TRAF2. Proceedings of the National Academy of Sciences of the United States of America. 96: 8408-13. PMID 10411888 DOI: 10.1073/Pnas.96.15.8408  0.711
Low-probability matches (unlikely to be authored by this person)
2010 Classen S, Rodic I, Holton J, Hura GL, Hammel M, Tainer JA. Software for the high-throughput collection of SAXS data using an enhanced Blu-Ice/DCS control system. Journal of Synchrotron Radiation. 17: 774-81. PMID 20975223 DOI: 10.1107/S0909049510028566  0.296
2019 Holton JM. Painting with X-rays: virtual beams for ideal data collection Acta Crystallographica Section a Foundations and Advances. 75: a365-a365. DOI: 10.1107/S0108767319096442  0.295
2018 Holton J. How many conformers do you need? Acta Crystallographica Section a Foundations and Advances. 74: a451-a451. DOI: 10.1107/S0108767318095491  0.295
2018 Kern J, Chatterjee R, Young ID, Fuller FD, Lassalle L, Ibrahim M, Gul S, Fransson T, Brewster AS, Alonso-Mori R, Hussein R, Zhang M, Douthit L, de Lichtenberg C, Cheah MH, ... ... Holton JM, et al. Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature. PMID 30405241 DOI: 10.1038/S41586-018-0681-2  0.293
2024 Vlahakis N, Holton J, Sauter NK, Ercius P, Brewster AS, Rodriguez JA. 3D Nanocrystallography and the Imperfect Molecular Lattice. Annual Review of Physical Chemistry. 75: 483-508. PMID 38941528 DOI: 10.1146/annurev-physchem-083122-105226  0.278
2017 Knott GJ, East-Seletsky A, Cofsky JC, Holton JM, Charles E, Doudna JA. Guide bound structures of a divergent RNA-targeting A cleaving CRISPR-Cas13a enzyme Nature Structural & Molecular Biology. DOI: 10.2210/Pdb5W1I/Pdb  0.278
2017 Holton JM. Resolution of the resolution limit Acta Crystallographica Section a Foundations and Advances. 73: a371-a371. DOI: 10.1107/S0108767317096386  0.272
2007 Huang DT, Hunt HW, Zhuang M, Ohi MD, Holton JM, Schulman BA. Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity. Nature. 445: 394-8. PMID 17220875 DOI: 10.1038/Nature05490  0.268
2021 Gee CL, Holton JM, McPherson A. Structures of two novel crystal forms of Aspergillus oryzae alpha amylase (taka-amylase). Journal of Bioscience and Bioengineering. PMID 33814275 DOI: 10.1016/j.jbiosc.2021.02.008  0.268
2020 Ibrahim M, Fransson T, Chatterjee R, Cheah MH, Hussein R, Lassalle L, Sutherlin KD, Young ID, Fuller FD, Gul S, Kim IS, Simon PS, de Lichtenberg C, Chernev P, Bogacz I, ... ... Holton JM, et al. Untangling the sequence of events during the S → S transition in photosystem II and implications for the water oxidation mechanism. Proceedings of the National Academy of Sciences of the United States of America. PMID 32434915 DOI: 10.1073/Pnas.2000529117  0.265
1997 Morgan CS, Holton JM, Olafson BD, Bjorkman PJ, Mayo SL. Circular dichroism determination of class I MHC-peptide equilibrium dissociation constants. Protein Science : a Publication of the Protein Society. 6: 1771-3. PMID 9260291 DOI: 10.1002/Pro.5560060819  0.259
2021 Kristensen LG, Holton JM, Rad B, Chen Y, Petzold CJ, Gupta S, Ralston CY. Hydroxyl radical mediated damage of proteins in low oxygen solution investigated using X-ray footprinting mass spectrometry. Journal of Synchrotron Radiation. 28: 1333-1342. PMID 34475282 DOI: 10.1107/S1600577521004744  0.258
2012 Holton JM, Nielsen C, Frankel KA. The point-spread function of fiber-coupled area detectors. Journal of Synchrotron Radiation. 19: 1006-11. PMID 23093762 DOI: 10.1107/S0909049512035571  0.258
2019 Classen S, Holton J, Ralston C, Hura G, Nix J, Adams P. Developing a shared computing and networking infrastructure for the ALS-ENABLE structural biology program at the Advanced Light Source Acta Crystallographica Section a Foundations and Advances. 75: a248-a248. DOI: 10.1107/S0108767319097563  0.257
2008 Berndsen CE, Tsubota T, Lindner SE, Lee S, Holton JM, Kaufman PD, Keck JL, Denu JM. Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75. Nature Structural & Molecular Biology. 15: 948-56. PMID 19172748 DOI: 10.1038/Nsmb.1459  0.256
2020 Sauter NK, Kern J, Yano J, Holton JM. Towards the spatial resolution of metalloprotein charge states by detailed modeling of XFEL crystallographic diffraction. Acta Crystallographica. Section D, Structural Biology. 76: 176-192. PMID 32038048 DOI: 10.1107/S2059798320000418  0.247
2009 Owen RL, Holton JM, Schulze-Briese C, Garman EF. Response to Krumreys Comments on Determination of X-ray flux using silicon pin diodes by R. L. Owen et al. (2009). J. Synchrotron Rad. 16, 143-153 Journal of Synchrotron Radiation. 16: 691-692. DOI: 10.1107/S0909049509023644  0.247
2020 Mendez D, Bolotovsky R, Bhowmick A, Brewster AS, Kern J, Yano J, Holton JM, Sauter NK. Beyond integration: modeling every pixel to obtain better structure factors from stills. Iucrj. 7: 1151-1167. PMID 33209326 DOI: 10.1107/S2052252520013007  0.239
2018 Sankaran B, Ralston C, Nix J, Holton J, Classen S, Adams P. The collaborative crystallography program at the Advanced Light Source Acta Crystallographica Section a Foundations and Advances. 74: a431-a431. DOI: 10.1107/S0108767318095697  0.214
2018 Sauter NK, Holton J, Kern J, Yano J, Yachandra V. Metalloprotein oxidation states spatially resolved by anomalous dispersion crystallography Acta Crystallographica Section a Foundations and Advances. 74: a381-a381. DOI: 10.1107/S0108767318096198  0.201
2011 Holton JM, Frankel KA, MacDowell AA, Spence JCH. Colliding beam anomalous measurements for S and P phasing Acta Crystallographica Section a Foundations of Crystallography. 67: C260-C261. DOI: 10.1107/S0108767311093482  0.194
2024 Mendez D, Holton JM, Lyubimov AY, Hollatz S, Mathews II, Cichosz A, Martirosyan V, Zeng T, Stofer R, Liu R, Song J, McPhillips S, Soltis M, Cohen AE. Deep residual networks for crystallography trained on synthetic data. Acta Crystallographica. Section D, Structural Biology. 80: 26-43. PMID 38164955 DOI: 10.1107/S2059798323010586  0.185
2024 Barends TRM, Gorel A, Bhattacharyya S, Schirò G, Bacellar C, Cirelli C, Colletier JP, Foucar L, Grünbein ML, Hartmann E, Hilpert M, Holton JM, Johnson PJM, Kloos M, Knopp G, et al. Influence of pump laser fluence on ultrafast myoglobin structural dynamics. Nature. 626: 905-911. PMID 38355794 DOI: 10.1038/s41586-024-07032-9  0.162
2023 Doyle MD, Bhowmick A, Wych DC, Lassalle L, Simon PS, Holton J, Sauter NK, Yachandra VK, Kern JF, Yano J, Wall ME. Water Networks in Photosystem II Using Crystalline Molecular Dynamics Simulations and Room-Temperature XFEL Serial Crystallography. Journal of the American Chemical Society. PMID 37369071 DOI: 10.1021/jacs.3c01412  0.159
2012 Livezey M, Nagy LD, Diffenderfer LE, Arthur EJ, Hsi DJ, Holton JM, Furge LL. Molecular analysis and modeling of inactivation of human CYP2D6 by four mechanism based inactivators. Drug Metabolism Letters. 6: 7-14. PMID 22372551 DOI: 10.2174/187231212800229318  0.144
2017 Chiu W, Holton J, Langan P, Sauter NK, Schlichting I, Terwilliger T, Martin JL, Read RJ, Wakatsuki S. Responses to `Atomic resolution': a badly abused term in structural biology. Acta Crystallographica. Section D, Structural Biology. 73: 381-383. PMID 28375150 DOI: 10.1107/S205979831700417X  0.137
2004 Miller D, Mathew R, Holton JM. Structural insights for therapeutic targeting of an E2 function and NEDDylation in proliferation control Cancer Biology and Therapy. 3: 924-925.  0.128
2018 Cooke ME, Jones SW, Ter Horst B, Moiemen N, Snow M, Chouhan G, Hill LJ, Esmaeli M, Moakes RJA, Holton J, Nandra R, Williams RL, Smith AM, Grover LM. Structuring of Hydrogels across Multiple Length Scales for Biomedical Applications. Advanced Materials (Deerfield Beach, Fla.). PMID 29430770 DOI: 10.1002/adma.201705013  0.127
2023 Bhowmick A, Hussein R, Bogacz I, Simon PS, Ibrahim M, Chatterjee R, Doyle MD, Cheah MH, Fransson T, Chernev P, Kim IS, Makita H, Dasgupta M, Kaminsky CJ, Zhang M, ... ... Holton JM, et al. Structural evidence for intermediates during O formation in photosystem II. Nature. PMID 37138085 DOI: 10.1038/s41586-023-06038-z  0.123
2021 Hussein R, Ibrahim M, Bhowmick A, Simon PS, Chatterjee R, Lassalle L, Doyle M, Bogacz I, Kim IS, Cheah MH, Gul S, de Lichtenberg C, Chernev P, Pham CC, Young ID, ... ... Holton JM, et al. Structural dynamics in the water and proton channels of photosystem II during the S to S transition. Nature Communications. 12: 6531. PMID 34764256 DOI: 10.1038/s41467-021-26781-z  0.123
2021 Ibrahim M, Moriarty NW, Kern J, Holton JM, Brewster AS, Bhowmick A, Bergmann U, Zouni A, Messinger J, Yachandra VK, Yano J, Dobbek H, Sauter NK, Adams PD. Reply to Wang et al.: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34117122 DOI: 10.1073/pnas.2102342118  0.095
2024 Bhowmick A, Hussein R, Bogacz I, Simon PS, Ibrahim M, Chatterjee R, Doyle MD, Cheah MH, Fransson T, Chernev P, Kim IS, Makita H, Dasgupta M, Kaminsky CJ, Zhang M, ... ... Holton JM, et al. Author Correction: Structural evidence for intermediates during O formation in photosystem II. Nature. PMID 38291188 DOI: 10.1038/s41586-024-07099-4  0.091
2015 Chapman G, Holton J, Chapman A. A threshold for concern? C-reactive protein levels following operatively managed neck of femur fractures can detect infectious complications with a simple formula. Clinical Biochemistry. PMID 26522777 DOI: 10.1016/j.clinbiochem.2015.10.018  0.074
2017 Czyz M, Kapinas A, Holton J, Pyzik R, Boszczyk BM, Quraishi NA. The computed tomography-based fractal analysis of trabecular bone structure may help in detecting decreased quality of bone before urgent spinal procedures. The Spine Journal : Official Journal of the North American Spine Society. 17: 1156-1162. PMID 28416437 DOI: 10.1016/j.spinee.2017.04.014  0.051
1983 Dawson P, Becker A, Holton JM. The effect of contrast media on the growth of bacteria. The British Journal of Radiology. 56: 809-15. PMID 6354344 DOI: 10.1259/0007-1285-56-671-809  0.051
2016 Imam MA, Fathalla I, Holton J, Nabil M, Kashif F. Cementless Total Hip Replacement for the Management of Severe Developmental Dysplasia of the Hip in the Middle Eastern Population: A Prospective Analysis. Frontiers in Surgery. 3: 31. PMID 27303670 DOI: 10.3389/fsurg.2016.00031  0.05
2017 Imam MA, Holton J, Horriat S, Negida AS, Grubhofer F, Gupta R, Narvani A, Snow M. A systematic review of the concept and clinical applications of bone marrow aspirate concentrate in tendon pathology. Sicot-J. 3: 58. PMID 28990575 DOI: 10.1051/sicotj/2017039  0.047
2017 Czyz M, Forster S, Holton J, Shariati B, Clarkson DJ, Boszczyk BM. New method for correction of lumbo-sacral kyphosis deformity in patient with high pelvic incidence. European Spine Journal : Official Publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. 26: 2204-2210. PMID 28688061 DOI: 10.1007/s00586-017-5205-5  0.042
2016 Arealis G, Holton J, Rodrigues JB, Sagkrioti M, Snow M, Hamlet M, Levy O. How to Build Your Simple and Cost-effective Arthroscopic Skills Simulator. Arthroscopy Techniques. 5: e1039-e1047. PMID 27909673 DOI: 10.1016/j.eats.2016.05.006  0.041
2016 Holton J, Imam MA, Snow M. Bone Marrow Aspirate in the Treatment of Chondral Injuries. Frontiers in Surgery. 3: 33. PMID 27379241 DOI: 10.3389/fsurg.2016.00033  0.04
2018 A Imam M, Holton J, Hassan AN, Matthana A. A Novel Suture Button Construct for Acute Ankle Syndesmotic Injuries; A Prospective Clinical and Radiological Analysis. The Archives of Bone and Joint Surgery. 6: 189-195. PMID 29911135  0.039
2018 Fathalla I, Holton J, Ashraf T. Examination under Anesthesia in Patients with Recurrent Patellar Dislocation: Prognostic Study. The Journal of Knee Surgery. 32: 361-365. PMID 29653442 DOI: 10.1055/s-0038-1641174  0.038
2016 Holton J, Imam M, Ward J, Snow M. The Basic Science of Bone Marrow Aspirate Concentrate in Chondral Injuries. Orthopedic Reviews. 8: 6659. PMID 27761221 DOI: 10.4081/or.2016.6659  0.032
1984 Erdman YJ, Holton JM, Becker A. Growth of Candida species in liquid culture medium for Trichomonas vaginalis. The British Journal of Venereal Diseases. 60: 39-41. PMID 6607763  0.03
2016 Erturan G, Holton J, Wall S, Giele H. Bartsocas-Papas Syndrome: A Case Report and Review of the Literature. Annals of Plastic Surgery. 76: 459-62. PMID 25275471 DOI: 10.1097/SAP.0000000000000348  0.027
2017 Imam MA, Mahmoud SSS, Holton J, Abouelmaati D, Elsherbini Y, Snow M. A systematic review of the concept and clinical applications of Bone Marrow Aspirate Concentrate in Orthopaedics. Sicot-J. 3: 17. PMID 29792397 DOI: 10.1051/sicotj/2017007  0.022
2012 Holton JM. The battle of signalversusnoise, and how to tip the balance in your favor Acta Crystallographica Section a Foundations of Crystallography. 68: s15-s15. DOI: 10.1107/S0108767312099709  0.021
2017 Holton J, Yousri T, Arealis G, Levy O. The Role of Reverse Shoulder Arthroplasty in Management of Proximal Humerus Fractures with Fracture Sequelae: A Systematic Review of the Literature. Orthopedic Reviews. 9: 6977. PMID 28286622 DOI: 10.4081/or.2017.6977  0.019
2018 Jones M, Holton J, Hughes S, Czyz M. Total spondylectomy. Journal of Spine Surgery (Hong Kong). 4: 663-665. PMID 30547135 DOI: 10.21037/jss.2018.06.12  0.017
2019 Shehata MSA, Aboelnas MM, Abdulkarim AN, Abdallah AR, Ahmed H, Holton J, Consigliere P, Narvani AA, Sallam AA, Wimhurst JA, Imam MA. Sliding hip screws versus cancellous screws for femoral neck fractures: a systematic review and meta-analysis. European Journal of Orthopaedic Surgery & Traumatology : Orthopedie Traumatologie. PMID 31165917 DOI: 10.1007/s00590-019-02460-0  0.016
2018 Rehousek P, Jenner E, Holton J, Czyz M, Capek L, Henys P, Kulvajtova M, Krbec M, Skala-Rosenbaum J. Biomechanical comparison of cemented versus non-cemented anterior screw fixation in type II odontoid fractures in the elderly: a cadaveric study. The Spine Journal : Official Journal of the North American Spine Society. 18: 1888-1895. PMID 29783086 DOI: 10.1016/j.spinee.2018.05.019  0.015
2017 Imam MA, Holton J, Ernstbrunner L, Pepke W, Grubhofer F, Narvani A, Snow M. A systematic review of the clinical applications and complications of bone marrow aspirate concentrate in management of bone defects and nonunions. International Orthopaedics. 41: 2213-2220. PMID 28804813 DOI: 10.1007/s00264-017-3597-9  0.011
2014 Holton J, Chapman G. A rare case of massive cutaneous metastases in breast carcinoma. Bmj Case Reports. 2014. PMID 24503663 DOI: 10.1136/bcr-2013-202839  0.01
2012 Holton J, Chung WL, Herford A. Trauma surgery. Journal of Oral and Maxillofacial Surgery : Official Journal of the American Association of Oral and Maxillofacial Surgeons. 70: e162-203. PMID 23128001 DOI: 10.1016/j.joms.2012.07.035  0.01
1971 Holton JM. A case of anaerobic streptococcal osteomyelitis following a simple fracture of a rib. Injury. 2: 245-6. PMID 5118786 DOI: 10.1016/S0020-1383(71)80058-X  0.01
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