Scott M. Stagg, Ph.D. - Publications

Florida State University, Tallahassee, FL, United States 
Molecular Biology, Biochemistry

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Paraan M, Mendez J, Sharum S, Kurtin D, He H, Stagg SM. The structures of natively assembled clathrin-coated vesicles. Science Advances. 6: eaba8397. PMID 32743076 DOI: 10.1126/Sciadv.Aba8397  0.64
2020 Randolph PS, Stagg SM. Reconstruction of Average Subtracted Tubular Regions (RASTR) enables structure determination of tubular filaments by cryo-EM. Journal of Structural Biology: X. 4: 100023. PMID 32647826 DOI: 10.1016/j.yjsbx.2020.100023  1
2020 Gao Y, Guo C, Watzlawik JO, Randolph PS, Lee EJ, Huang D, Stagg SM, Zhou HX, Rosenberry TL, Paravastu AK. Out-of-register parallel β-sheets and antiparallel β-sheets coexist in 150 kDa oligomers formed by Amyloid-β(1-42). Journal of Molecular Biology. PMID 32470558 DOI: 10.1016/J.Jmb.2020.05.018  1
2019 Meyer NL, Hu G, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich DS, Trzynka A, David L, Stagg SM, Chapman MS. Structure of the gene therapy vector, adeno-associated virus with its cell receptor, AAVR. Elife. 8. PMID 31115336 DOI: 10.7554/Elife.44707  0.64
2019 Meyer NL, Hu G, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich DS, Trzynka A, David L, Stagg SM, Chapman MS. Author response: Structure of the gene therapy vector, adeno-associated virus with its cell receptor, AAVR Elife. DOI: 10.7554/Elife.44707.031  0.64
2018 Paraan M, Bhattacharya N, Uversky VN, Stagg SM. Flexibility of the sec13/31 cage is influenced by the sec31 C-terminal disordered domain. Journal of Structural Biology. PMID 30172710 DOI: 10.1016/J.Jsb.2018.08.016  0.96
2018 Slosarek EL, Schuh AL, Pustova I, Johnson A, Bird J, Johnson M, Frankel EB, Bhattacharya N, Hanna MG, Burke JE, Ruhl DA, Quinney K, Block S, Peotter JL, Chapman ER, ... ... Stagg SM, et al. Pathogenic TFG Mutations Underlying Hereditary Spastic Paraplegia Impair Secretory Protein Trafficking and Axon Fasciculation. Cell Reports. 24: 2248-2260. PMID 30157421 DOI: 10.1016/J.Celrep.2018.07.081  0.96
2017 Tian S, Yu G, He H, Zhao Y, Liu P, Marshall AG, Demeler B, Stagg SM, Li H. Pih1p-Tah1p Puts a Lid on Hexameric AAA+ ATPases Rvb1/2p. Structure (London, England : 1993). PMID 28919439 DOI: 10.1016/J.Str.2017.08.002  0.64
2017 Xie Q, Spear JM, Noble AJ, Sousa DR, Meyer NL, Davulcu O, Zhang F, Linhardt RJ, Stagg SM, Chapman MS. The 2.8 Å Electron Microscopy Structure of Adeno-Associated Virus-DJ Bound by a Heparinoid Pentasaccharide. Molecular Therapy. Methods & Clinical Development. 5: 1-12. PMID 28480299 DOI: 10.1016/J.Omtm.2017.02.004  0.64
2016 Lowry TW, Hariri H, Prommapan P, Kusi-Appiah A, Vafai N, Bienkiewicz EA, Van Winkle DH, Stagg SM, Lenhert S. Quantification of Protein-Induced Membrane Remodeling Kinetics In Vitro with Lipid Multilayer Gratings. Small (Weinheim An Der Bergstrasse, Germany). 12: 506-15. PMID 26649649 DOI: 10.1002/Smll.201502398  0.96
2015 Mukhitov N, Spear JM, Stagg S, Roper MG. Interfacing Microfluidics with Negative Stain Transmission Electron Microscopy. Analytical Chemistry. PMID 26642355 DOI: 10.1021/Acs.Analchem.5B03884  0.96
2015 Noble AJ, Stagg SM. Automated batch fiducial-less tilt-series alignment in Appion using Protomo. Journal of Structural Biology. 192: 270-8. PMID 26455557 DOI: 10.1016/J.Jsb.2015.10.003  0.96
2015 Spear JM, Noble AJ, Xie Q, Sousa DR, Chapman MS, Stagg SM. The influence of frame alignment with dose compensation on the quality of single particle reconstructions. Journal of Structural Biology. PMID 26391007 DOI: 10.1016/J.Jsb.2015.09.006  0.96
2015 Noble AJ, Stagg SM. STRUCTURAL BIOLOGY. COPI gets a fancy new coat. Science (New York, N.Y.). 349: 142-3. PMID 26160933 DOI: 10.1126/Science.Aac6537  0.96
2015 Johnson A, Bhattacharya N, Hanna M, Pennington JG, Schuh AL, Wang L, Otegui MS, Stagg SM, Audhya A. TFG clusters COPII-coated transport carriers and promotes early secretory pathway organization. The Embo Journal. 34: 811-27. PMID 25586378 DOI: 10.15252/Embj.201489032  0.96
2015 Gianfelice A, Le PH, Rigano LA, Saila S, Dowd GC, McDivitt T, Bhattacharya N, Hong W, Stagg SM, Ireton K. Host endoplasmic reticulum COPII proteins control cell-to-cell spread of the bacterial pathogen Listeria monocytogenes. Cellular Microbiology. 17: 876-92. PMID 25529574 DOI: 10.1111/Cmi.12409  0.96
2015 Spear JM, Koborssy DA, Schwartz AB, Johnson AJ, Audhya A, Fadool DA, Stagg SM. Kv1.3 contains an alternative C-terminal ER exit motif and is recruited into COPII vesicles by Sec24a Bmc Biochemistry. 16. DOI: 10.1186/s12858-015-0045-6  0.96
2014 Ramia NF, Spilman M, Tang L, Shao Y, Elmore J, Hale C, Cocozaki A, Bhattacharya N, Terns RM, Terns MP, Li H, Stagg SM. Essential structural and functional roles of the Cmr4 subunit in RNA cleavage by the Cmr CRISPR-Cas complex. Cell Reports. 9: 1610-7. PMID 25482566 DOI: 10.1016/J.Celrep.2014.11.007  0.96
2014 Hariri H, Bhattacharya N, Johnson K, Noble AJ, Stagg SM. Insights into the mechanisms of membrane curvature and vesicle scission by the small GTPase Sar1 in the early secretory pathway. Journal of Molecular Biology. 426: 3811-26. PMID 25193674 DOI: 10.1016/J.Jmb.2014.08.023  0.96
2014 Stagg SM, Noble AJ, Spilman M, Chapman MS. ResLog plots as an empirical metric of the quality of cryo-EM reconstructions. Journal of Structural Biology. 185: 418-26. PMID 24384117 DOI: 10.1016/J.Jsb.2013.12.010  0.96
2014 Stagg SM, Noble AJ, Spilman M, Chapman M. ResLog plots: A new metric for the quality of cryo-EM reconstructions Microscopy and Microanalysis. 20: 1254-1255. DOI: 10.1017/S1431927614008009  0.96
2013 Spilman M, Cocozaki A, Hale C, Shao Y, Ramia N, Terns R, Terns M, Li H, Stagg S. Structure of an RNA silencing complex of the CRISPR-Cas immune system. Molecular Cell. 52: 146-52. PMID 24119404 DOI: 10.1016/J.Molcel.2013.09.008  0.36
2013 Xie Q, Spilman M, Meyer NL, Lerch TF, Stagg SM, Chapman MS. Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus. Journal of Structural Biology. 184: 129-35. PMID 24036405 DOI: 10.1016/J.Jsb.2013.09.004  0.96
2013 Sousa DR, Stagg SM, Stroupe ME. Cryo-EM structures of the actin:tropomyosin filament reveal the mechanism for the transition from C- to M-state. Journal of Molecular Biology. 425: 4544-55. PMID 24021812 DOI: 10.1016/J.Bpj.2013.11.2573  0.96
2013 Noble AJ, Zhang Q, O'Donnell J, Hariri H, Bhattacharya N, Marshall AG, Stagg SM. A pseudoatomic model of the COPII cage obtained from cryo-electron microscopy and mass spectrometry. Nature Structural & Molecular Biology. 20: 167-73. PMID 23262493 DOI: 10.1038/Nsmb.2467  0.96
2012 Shrum DC, Woodruff BW, Stagg SM. Creating an infrastructure for high-throughput high-resolution cryogenic electron microscopy. Journal of Structural Biology. 180: 254-8. PMID 22842049 DOI: 10.1016/J.Jsb.2012.07.009  0.96
2012 Lerch TF, O'Donnell JK, Meyer NL, Xie Q, Taylor KA, Stagg SM, Chapman MS. Structure of AAV-DJ, a retargeted gene therapy vector: cryo-electron microscopy at 4.5 Ã… resolution. Structure (London, England : 1993). 20: 1310-20. PMID 22727812 DOI: 10.1016/J.Str.2012.05.004  0.96
2012 McCraw DM, O'Donnell JK, Taylor KA, Stagg SM, Chapman MS. Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20. Virology. 431: 40-9. PMID 22682774 DOI: 10.1016/J.Virol.2012.05.004  0.96
2012 Bhattacharya N, O Donnell J, Stagg SM. The structure of the Sec13/31 COPII cage bound to Sec23. Journal of Molecular Biology. 420: 324-34. PMID 22543240 DOI: 10.1016/J.Jmb.2012.04.024  0.96
2012 Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR. ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin. Cell. 149: 113-23. PMID 22445172 DOI: 10.1016/J.Cell.2012.02.047  0.96
2011 O'Donnell J, Maddox K, Stagg S. The structure of a COPII tubule. Journal of Structural Biology. 173: 358-64. PMID 20828620 DOI: 10.1016/J.Jsb.2010.09.002  0.96
2011 Stagg SM, Knappenberger KL, Dowgiallo AM, Chandra M. Three-dimensional interfacial structure determination of hollow gold nanosphere aggregates Journal of Physical Chemistry Letters. 2: 2946-2950. DOI: 10.1021/Jz201352M  0.96
2010 Russell C, Stagg SM. New insights into the structural mechanisms of the COPII coat. Traffic (Copenhagen, Denmark). 11: 303-10. PMID 20070605 DOI: 10.1111/J.1600-0854.2009.01026.X  0.96
2009 Lander GC, Stagg SM, Voss NR, Cheng A, Fellmann D, Pulokas J, Yoshioka C, Irving C, Mulder A, Lau PW, Lyumkis D, Potter CS, Carragher B. Appion: an integrated, database-driven pipeline to facilitate EM image processing. Journal of Structural Biology. 166: 95-102. PMID 19263523 DOI: 10.1016/J.Jsb.2009.01.002  0.96
2008 Stagg SM, LaPointe P, Razvi A, Gürkan C, Potter CS, Carragher B, Balch WE. Structural basis for cargo regulation of COPII coat assembly. Cell. 134: 474-84. PMID 18692470 DOI: 10.1016/J.Cell.2008.06.024  0.96
2008 Stagg SM, Lander GC, Quispe J, Voss NR, Cheng A, Bradlow H, Bradlow S, Carragher B, Potter CS. A test-bed for optimizing high-resolution single particle reconstructions. Journal of Structural Biology. 163: 29-39. PMID 18534866 DOI: 10.1016/J.Jsb.2008.04.005  0.96
2008 Clare DK, Stagg S, Quispe J, Farr GW, Horwich AL, Saibil HR. Multiple states of a nucleotide-bound group 2 chaperonin. Structure (London, England : 1993). 16: 528-34. PMID 18400175 DOI: 10.1016/J.Str.2008.01.016  0.96
2008 Mears JA, Stagg SM, Harvey SC. Modeling Large RNA Assemblies using a Reduced Representation Handbook of Rna Biochemistry. 546-559. DOI: 10.1002/9783527619504.ch33  0.96
2007 Stagg SM, LaPointe P, Balch WE. Structural design of cage and coat scaffolds that direct membrane traffic. Current Opinion in Structural Biology. 17: 221-8. PMID 17395454 DOI: 10.1016/J.Sbi.2007.03.010  0.96
2006 Gürkan C, Stagg SM, Lapointe P, Balch WE. The COPII cage: unifying principles of vesicle coat assembly. Nature Reviews. Molecular Cell Biology. 7: 727-38. PMID 16990852 DOI: 10.1038/Nrm2025  0.96
2006 Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS. Automated cryoEM data acquisition and analysis of 284742 particles of GroEL. Journal of Structural Biology. 155: 470-81. PMID 16762565 DOI: 10.1016/J.Jsb.2006.04.005  0.96
2006 Stagg SM, Gürkan C, Fowler DM, LaPointe P, Foss TR, Potter CS, Carragher B, Balch WE. Structure of the Sec13/31 COPII coat cage. Nature. 439: 234-8. PMID 16407955 DOI: 10.1038/Nature04339  0.96
2005 Stagg SM, Harvey SC. Exploring the flexibility of ribosome recycling factor using molecular dynamics. Biophysical Journal. 89: 2659-66. PMID 16055531 DOI: 10.1529/Biophysj.104.052373  0.96
2005 Suloway C, Pulokas J, Fellmann D, Cheng A, Guerra F, Quispe J, Stagg S, Potter CS, Carragher B. Automated molecular microscopy: the new Leginon system. Journal of Structural Biology. 151: 41-60. PMID 15890530 DOI: 10.1016/J.Jsb.2005.03.010  0.96
2003 Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nature Structural Biology. 10: 899-906. PMID 14566331 DOI: 10.1038/Nsb1003  0.96
2003 Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell. 113: 789-801. PMID 12809609 DOI: 10.1016/S0092-8674(03)00427-6  0.96
2003 Stagg SM, Mears JA, Harvey SC. A structural model for the assembly of the 30S subunit of the ribosome. Journal of Molecular Biology. 328: 49-61. PMID 12683996 DOI: 10.1016/S0022-2836(03)00174-8  0.96
2003 Dong WJ, Robinson JM, Stagg S, Xing J, Cheung HC. Ca2+-induced conformational transition in the inhibitory and regulatory regions of cardiac troponin I. The Journal of Biological Chemistry. 278: 8686-92. PMID 12511564 DOI: 10.1074/Jbc.M212886200  0.96
2002 Stagg SM, Valle M, Agrawal RK, Frank J, Harvey SC. Problems with the transorientation hypothesis. Rna (New York, N.Y.). 8: 1093-4. PMID 12358427 DOI: 10.1017/S1355838202027061  0.96
2002 Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RK, Harvey SC. Modeling a minimal ribosome based on comparative sequence analysis. Journal of Molecular Biology. 321: 215-34. PMID 12144780 DOI: 10.1016/S0022-2836(02)00568-5  0.96
2001 Stagg SM, Frazer-Abel AA, Hagerman PJ, Harvey SC. Structural studies of the tRNA domain of tmRNA. Journal of Molecular Biology. 309: 727-35. PMID 11397092 DOI: 10.1006/Jmbi.2001.4632  0.96
2000 Sardesai NY, Stagg SM, Vanloock MS, Harvey SC, Schimmel P. RNA scaffolds for minihelix-based aminoacyl transfer: design of "transpeptizymes". Journal of Biomolecular Structure & Dynamics. 17: 29-37. PMID 22607404 DOI: 10.1080/07391102.2000.10506601  0.96
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