William H. Konigsberg - Publications

Affiliations: 
Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
Area:
Blood Coagulation; DNA Replication; Genetics; Proteins and Macromolecules
Website:
http://medicine.yale.edu/mbb/faculty/william_konigsberg.profile

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Xia S, Wood M, Bradley MJ, De La Cruz EM, Konigsberg WH. Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics. Nucleic Acids Research. 41: 9077-89. PMID 23921641 DOI: 10.1093/nar/gkt674  1
2012 Englert M, Xia S, Okada C, Nakamura A, Tanavde V, Yao M, Eom SH, Konigsberg WH, Söll D, Wang J. Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH. Proceedings of the National Academy of Sciences of the United States of America. 109: 15235-40. PMID 22949672 DOI: 10.1073/pnas.1213795109  1
2012 Xia S, Vashishtha A, Bulkley D, Eom SH, Wang J, Konigsberg WH. Contribution of partial charge interactions and base stacking to the efficiency of primer extension at and beyond abasic sites in DNA. Biochemistry. 51: 4922-31. PMID 22630605 DOI: 10.1021/bi300296q  1
2012 Xia S, Christian TD, Wang J, Konigsberg WH. Probing minor groove hydrogen bonding interactions between RB69 DNA polymerase and DNA. Biochemistry. 51: 4343-53. PMID 22571765 DOI: 10.1021/bi300416z  1
2012 Xia S, Eom SH, Konigsberg WH, Wang J. Structural basis for differential insertion kinetics of dNMPs opposite a difluorotoluene nucleotide residue. Biochemistry. 51: 1476-85. PMID 22304682 DOI: 10.1021/bi2016487  1
2012 Xia S, Eom SH, Konigsberg WH, Wang J. Bidentate and tridentate metal-ion coordination states within ternary complexes of RB69 DNA polymerase. Protein Science : a Publication of the Protein Society. 21: 447-51. PMID 22238207 DOI: 10.1002/pro.2026  1
2011 Wang M, Xia S, Blaha G, Steitz TA, Konigsberg WH, Wang J. Insights into base selectivity from the 1.8 Å resolution structure of an RB69 DNA polymerase ternary complex. Biochemistry. 50: 581-90. PMID 21158418 DOI: 10.1021/bi101192f  1
2004 Jiang X, Bailly MA, Panetti TS, Cappello M, Konigsberg WH, Bromberg ME. Formation of tissue factor-factor VIIa-factor Xa complex promotes cellular signaling and migration of human breast cancer cells. Journal of Thrombosis and Haemostasis : Jth. 2: 93-101. PMID 14717972 DOI: 10.1111/j.1538-7836.2004.00545.x  1
2002 Bebenek A, Carver GT, Dressman HK, Kadyrov FA, Haseman JK, Petrov V, Konigsberg WH, Karam JD, Drake JW. Dissecting the fidelity of bacteriophage RB69 DNA polymerase: site-specific modulation of fidelity by polymerase accessory proteins. Genetics. 162: 1003-18. PMID 12454051  1
2001 Lin TC, Wang CX, Joyce CM, Konigsberg WH. 3'-5' Exonucleolytic activity of DNA polymerases: structural features that allow kinetic discrimination between ribo- and deoxyribonucleotide residues. Biochemistry. 40: 8749-55. PMID 11467934 DOI: 10.1021/bi0105936  1
2001 Bebenek A, Dressman HK, Carver GT, Ng S, Petrov V, Yang G, Konigsberg WH, Karam JD, Drake JW. Interacting fidelity defects in the replicative DNA polymerase of bacteriophage RB69. The Journal of Biological Chemistry. 276: 10387-97. PMID 11133987 DOI: 10.1074/jbc.M007707200  1
1999 Bromberg ME, Sundaram R, Homer RJ, Garen A, Konigsberg WH. Role of tissue factor in metastasis: functions of the cytoplasmic and extracellular domains of the molecule. Thrombosis and Haemostasis. 82: 88-92. PMID 10456459  1
1998 Donnelly KM, Bromberg ME, Milstone A, Madison McNiff JM, Terwilliger G, Konigsberg WH, Cappello M. Ancylostoma caninum anticoagulant peptide blocks metastasis in vivo and inhibits factor Xa binding to melanoma cells in vitro. Thrombosis and Haemostasis. 79: 1041-7. PMID 9609244  1
1997 Goodrich LD, Lin TC, Spicer EK, Jones C, Konigsberg WH. Residues at the carboxy terminus of T4 DNA polymerase are important determinants for interaction with the polymerase accessory proteins. Biochemistry. 36: 10474-81. PMID 9265627 DOI: 10.1021/bi9708949  1
1997 Wang J, Sattar AK, Wang CC, Karam JD, Konigsberg WH, Steitz TA. Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell. 89: 1087-99. PMID 9215631  1
1996 Wang J, Yu P, Lin TC, Konigsberg WH, Steitz TA. Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions. Biochemistry. 35: 8110-9. PMID 8679562 DOI: 10.1021/bi960178r  1
1996 Banner DW, D'Arcy A, Chène C, Winkler FK, Guha A, Konigsberg WH, Nemerson Y, Kirchhofer D. The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor. Nature. 380: 41-6. PMID 8598903 DOI: 10.1038/380041a0  1
1995 Hasselbacher CA, Rusinova E, Waxman E, Rusinova R, Kohanski RA, Lam W, Guha A, Du J, Lin TC, Polikarpov I, Boys CWG, Nemerson Y, Konigsberg WH, Ross JBA. Environments of the four tryptophans in the extracellular domain of human tissue factor: Comparison of results from absorption and fluorescence difference spectra of tryptophan replacement mutants with the crystal structure of the wild-type protein Biophysical Journal. 69: 20-29. PMID 7669897  1
1995 Bromberg ME, Konigsberg WH, Madison JF, Pawashe A, Garen A. Tissue factor promotes melanoma metastasis by a pathway independent of blood coagulation. Proceedings of the National Academy of Sciences of the United States of America. 92: 8205-9. PMID 7667269 DOI: 10.1073/pnas.92.18.8205  1
1995 Shamoo Y, Friedman AM, Parsons MR, Konigsberg WH, Steitz TA. Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA. Nature. 376: 362-6. PMID 7630406 DOI: 10.1038/376362a0  1
1995 Kirchhofer D, Guha A, Nemerson Y, Konigsberg WH, Vilbois F, Chène C, Banner DW, D'Arcy A. Activation of blood coagulation factor VIIa with cleaved tissue factor extracellular domain and crystallization of the active complex. Proteins. 22: 419-25. PMID 7479715 DOI: 10.1002/prot.340220412  1
1993 Shamoo Y, Tam A, Konigsberg WH, Williams KR. Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure. Journal of Molecular Biology. 232: 89-104. PMID 8331672 DOI: 10.1006/jmbi.1993.1372  1
1991 Shamoo Y, Webster KR, Williams KR, Konigsberg WH. A retrovirus-like zinc domain is essential for translational repression of bacteriophage T4 gene 32. The Journal of Biological Chemistry. 266: 7967-70. PMID 2022625  1
1991 Williams KR, Konigsberg WH. Identification of amino acid residues at interface of protein-nucleic acid complexes by photochemical cross-linking. Methods in Enzymology. 208: 516-39. PMID 1779846  1
1989 Rush J, Lin TC, Quinones M, Spicer EK, Douglas I, Williams KR, Konigsberg WH. The 44P subunit of the T4 DNA polymerase accessory protein complex catalyzes ATP hydrolysis. The Journal of Biological Chemistry. 264: 10943-53. PMID 2786875  1
1989 Conway EM, Bach R, Rosenberg RD, Konigsberg WH. Tumor necrosis factor enhances expression of tissue factor mRNA in endothelial cells. Thrombosis Research. 53: 231-41. PMID 2718149 DOI: 10.1016/0049-3848(89)90098-4  1
1989 Shamoo Y, Ghosaini LR, Keating KM, Williams KR, Sturtevant JM, Konigsberg WH. Site-specific mutagenesis of T4 gene 32: the role of tyrosine residues in protein-nucleic acid interactions. Biochemistry. 28: 7409-17. PMID 2684276  1
1989 Bauer KA, Conway EM, Bach R, Konigsberg WH, Griffin JD, Demetri G. Tissue factor gene expression in acute myeloblastic leukemia. Thrombosis Research. 56: 425-30. PMID 2617479 DOI: 10.1016/0049-3848(89)90255-7  1
1988 Shamoo Y, Williams KR, Konigsberg WH. Photochemical crosslinking of bacteriophage T4 single-stranded DNA-binding protein (gp32) to oligo-p(dT)8: identification of phenylalanine-183 as the site of crosslinking. Proteins. 4: 1-6. PMID 3186689 DOI: 10.1002/prot.340040103  1
1987 Spicer EK, Horton R, Bloem L, Bach R, Williams KR, Guha A, Kraus J, Lin TC, Nemerson Y, Konigsberg WH. Isolation of cDNA clones coding for human tissue factor: primary structure of the protein and cDNA. Proceedings of the National Academy of Sciences of the United States of America. 84: 5148-52. PMID 3037536  1
1986 Coleman JE, Williams KR, King GC, Prigodich RV, Shamoo Y, Konigsberg WH. Protein chemistry-nuclear magnetic resonance approach to mapping functional domains in single-stranded DNA binding proteins. Journal of Cellular Biochemistry. 32: 305-26. PMID 3543031 DOI: 10.1002/jcb.240320407  1
1986 Williams KR, Hemmings HC, LoPresti MB, Konigsberg WH, Greengard P. DARPP-32, a dopamine- and cyclic AMP-regulated neuronal phosphoprotein. Primary structure and homology with protein phosphatase inhibitor-1. The Journal of Biological Chemistry. 261: 1890-903. PMID 3511054  1
1986 Giedroc DP, Keating KM, Williams KR, Konigsberg WH, Coleman JE. Gene 32 protein, the single-stranded DNA binding protein from bacteriophage T4, is a zinc metalloprotein. Proceedings of the National Academy of Sciences of the United States of America. 83: 8452-6. PMID 3490667 DOI: 10.1073/pnas.83.22.8452  1
1986 Prigodich RV, Shamoo Y, Williams KR, Chase JW, Konigsberg WH, Coleman JE. 1H NMR (500 MHz) identification of aromatic residues of gene 32 protein involved in DNA binding by use of protein containing perdeuterated aromatic residues and by site-directed mutagenesis. Biochemistry. 25: 3666-72. PMID 3013293  1
1986 Shamoo Y, Adari H, Konigsberg WH, Williams KR, Chase JW. Cloning of T4 gene 32 and expression of the wild-type protein under lambda promoter PL regulation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 83: 8844-8. PMID 2947239  1
1985 Adari HY, Rose K, Williams KR, Konigsberg WH, Lin TC, Spicer EK. Cloning, nucleotide sequence, and overexpression of the bacteriophage T4 regA gene. Proceedings of the National Academy of Sciences of the United States of America. 82: 1901-5. PMID 3872458 DOI: 10.1073/pnas.82.7.1901  1
1984 Lalor TM, Kjeldgaard M, Shimamoto GT, Strickler JE, Konigsberg WH, Richards FF. Trypanosome variant-specific glycoproteins: a polygene protein family with multiple folding patterns? Proceedings of the National Academy of Sciences of the United States of America. 81: 998-1002. PMID 6583708 DOI: 10.1073/pnas.81.4.998  1
1984 Merrill BM, Williams KR, Chase JW, Konigsberg WH. Photochemical cross-linking of the Escherichia coli single-stranded DNA-binding protein to oligodeoxynucleotides. Identification of phenylalanine 60 as the site of cross-linking. The Journal of Biological Chemistry. 259: 10850-6. PMID 6540775  1
1984 Hemmings HC, Williams KR, Konigsberg WH, Greengard P. DARPP-32, a dopamine- and adenosine 3':5'-monophosphate-regulated neuronal phosphoprotein. I. Amino acid sequence around the phosphorylated threonine. The Journal of Biological Chemistry. 259: 14486-90. PMID 6501302  1
1984 Horwich AL, Fenton WA, Williams KR, Kalousek F, Kraus JP, Doolittle RF, Konigsberg W, Rosenberg LE. Structure and expression of a complementary DNA for the nuclear coded precursor of human mitochondrial ornithine transcarbamylase. Science (New York, N.Y.). 224: 1068-74. PMID 6372096  1
1983 Carson SD, Carson SM, Konigsberg WH. Monoclonal antibody recognizing rabbit IgG (Fab). A specific reagent for second antibody applications. The Journal of Biological Chemistry. 258: 9510-3. PMID 6874700  1
1983 Horwich AL, Kraus JP, Williams K, Kalousek F, Konigsberg W, Rosenberg LE. Molecular cloning of the cDNA coding for rat ornithine transcarbamoylase. Proceedings of the National Academy of Sciences of the United States of America. 80: 4258-62. PMID 6576335  1
1983 Merritt SC, Tschudi C, Konigsberg WH, Richards FF. Reverse transcription of trypanosome variable antigen mRNAs initiated by a specific oligonucleotide primer. Proceedings of the National Academy of Sciences of the United States of America. 80: 1536-40. PMID 6188156  1
1982 Bogucki MS, Onodera M, Rosen NL, Lifter J, Hotez PJ, Konigsberg WH, Richards FF. Trypanosoma congolense: surface glycoproteins of two early bloodstream variants. III. Immunochemical characterization. Experimental Parasitology. 53: 1-10. PMID 7056338 DOI: 10.1016/0014-4894(82)90086-8  1
1982 Spicer EK, Noble JA, Nossal NG, Konigsberg WH, Williams KR. Bacteriophage T4 gene 45. Sequences of the structural gene and its protein product. The Journal of Biological Chemistry. 257: 8972-9. PMID 6284751  1
1981 Sillerud LO, Prestegard JH, Yu RK, Konigsberg WH, Schafer DE. Observation by 13C NMR of interactions between cholera toxin and the oligosaccharide of ganglioside GM1. The Journal of Biological Chemistry. 256: 1094-7. PMID 7451491  1
1981 Onodera M, Rosen NL, Lifter J, Hotez PJ, Bogucki MS, Davis G, Patton CL, Konigsberg WH, Richards FF. Trypanosoma congolense: surface glycoproteins of two early bloodstream variants. II. Purification and partial chemical characterization. Experimental Parasitology. 52: 427-39. PMID 7318988 DOI: 10.1016/0014-4894(81)90102-8  1
1981 Carson SD, Konigsberg WH. Phenyl--Sepharose chromatography of membrane proteins solubilized in Triton X-100. Analytical Biochemistry. 116: 398-401. PMID 7316173 DOI: 10.1016/0003-2697(81)90379-1  1
1981 Carson SD, Konigsberg WH. Coagulation factor III (tissue factor) interaction with phospholipid vesicles induced by cadmium: characterization of the reconstituted protein-membrane complex. Bioscience Reports. 1: 197-205. PMID 7295892 DOI: 10.1007/BF01114905  1
1981 Nakashima Y, Frangione B, Wiseman RL, Konigsberg WH. Primary structure of the major coat protein of the filamentous bacterial viruses, If1 and Ike. The Journal of Biological Chemistry. 256: 5792-7. PMID 7240173  1
1981 Rosen NL, Onodera M, Hotez PJ, Bogucki MS, Elce B, Patton C, Konigsberg WH, Cross GA, Richards FF. Trypanosoma congolense: surface glycoproteins of two early bloodstream variants. I. Production of a relapsing infection in rodents. Experimental Parasitology. 52: 210-8. PMID 6168484 DOI: 10.1016/0014-4894(81)90076-X  1
1981 Richards FF, Rosen NL, Onodera M, Bogucki MS, Neve RL, Hotez P, Armstrong MY, Konigsberg WH. Antigenic variation and the surface glycoproteins of Trypanosoma congolense. Federation Proceedings. 40: 1434-9. PMID 6163660  1
1980 Carson SD, Konigsberg WH. Cadmium increases tissue factor (coagulation factor III) activity by facilitating its reassociation with lipids. Science (New York, N.Y.). 208: 307-9. PMID 7367861  1
1980 Williams KR, LoPresti MB, Setoguchi M, Konigsberg WH. Amino acid sequence of the T4 DNA helix-destabilizing protein. Proceedings of the National Academy of Sciences of the United States of America. 77: 4614-7. PMID 6254033  1
1979 Sillerud LO, Schafer DE, Yu RK, Konigsberg WH. Calorimetric properties of mixtures of ganglioside GM1 and dipalmitoylphosphatidylcholine. The Journal of Biological Chemistry. 254: 10876-80. PMID 583047  1
1979 Cabrer B, Taira H, Broeze RJ, Kempe TD, Williams K, Slattery E, Konigsberg WH, Lengyel P. Structural characteristics of interferons from mouse Ehrlich ascites tumor cells. The Journal of Biological Chemistry. 254: 3681-4. PMID 438151  1
1979 Spicer EK, Williams KR, Konigsberg WH. T4 gene 32 protein trypsin-generated fragments. Fluorescence measurement of DNA-binding parameters. The Journal of Biological Chemistry. 254: 6433-6. PMID 221499  1
1979 Williams KR, Sillerud LO, Schafer DE, Konigsberg WH. DNA binding properties of the T4 DNA helix-destabilizing protein. A calorimetric study. The Journal of Biological Chemistry. 254: 6426-32. PMID 221498  1
1978 Sillerud LO, Prestégard JH, Yu RK, Schafer DE, Konigsberg WH. Assignment of the 13C nuclear magnetic resonance spectrum of aqueous ganglioside GM1 micelles. Biochemistry. 17: 2619-28. PMID 678532  1
1974 Lifter J, Hew CL, Yoshioka M, Richards FF, Konigsberg WH. Affinity-labeled peptides obtained from the combining region of myeloma protein 460. I. Heavy-chain-labeling patterns using dinitrophenyl azide photoaffinity label. Biochemistry. 13: 3567-71. PMID 4858712  1
1974 Richards FF, Lifter J, Hew CL, Yoshioka M, Konigsberg WH. Photoaffinity labeling of the combining region of myeloma protein 460. II. An interpretation of the labeling patterns. Biochemistry. 13: 3572-5. PMID 4858490  1
1956 BECKER RR, KONIGSBERG WH, STRACHER A. Isolation of DNP-peptides from DNP-polyvalyl-proteins. Biochimica Et Biophysica Acta. 20: 595-6. PMID 13341973  0.36
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