Arup K. Chakraborty - Publications

1988-2005 Chemical Engineering University of California, Berkeley, Berkeley, CA 
 2005- Chemical Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
cell-cell recognition in immunology, T cell biology, polymers and membranes statistical mechanics

170 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Barton JP, Rajkoomar E, Mann JK, Murakowski DK, Toyoda M, Mahiti M, Mwimanzi P, Ueno T, Chakraborty AK, Ndung'u T. Modelling and testing of the HIV-1 Nef fitness landscape. Virus Evolution. 5: vez029. PMID 31392033 DOI: 10.1093/ve/vez029  0.8
2018 Bao XY, Wang QN, Zhang Y, Zhang Q, Li DS, Yang WZ, Zhang ZS, Zong R, Han C, Duan L. Epidemiology of moyamoya disease in China: a single-center, population-based study. World Neurosurgery. PMID 30404059 DOI: 10.1016/j.wneu.2018.10.175  0.48
2018 Qian S, Xie Z, Liu J, Li M, Wang S, Luo N, Wang C. DBU-promoted Cascade Annulation of Nitroarylcyclopropane-1,1-dicarbonitriles and 3-Aryl-2-cyanoacrylates: An Access to Highly Functionalized Cyclopenta[b]furan Derivatives. The Journal of Organic Chemistry. PMID 30403868 DOI: 10.1021/acs.joc.8b02325  0.44
2018 Huang MC, Tzeng SL, Lee CI, Chen HH, Huang CC, Lee TH, Lee MS. GnRH agonist long protocol versus GnRH antagonist protocol for various aged patients with diminished ovarian reserve: A retrospective study. Plos One. 13: e0207081. PMID 30403766 DOI: 10.1371/journal.pone.0207081  0.64
2018 Du J, Jiang YJ, Suo JJ, Wu WQ, Liu XY, Chen D, Ding CH, Wei Y, Hou XL. Trisubstituted alkenes with a single activator as dipolarophiles in a highly diastereo- and enantioselective [3+2] cycloaddition with vinyl epoxides under Pd-catalysis. Chemical Communications (Cambridge, England). PMID 30403245 DOI: 10.1039/c8cc07996j  0.64
2018 Zhu HF, Wang GL, Zhou ZJ, Fan SW. Prospective Study of Long-term Effect between Multifidus Muscle Bundle and Conventional Open Approach in One-level Posterior Lumbar Interbody Fusion. Orthopaedic Surgery. PMID 30402963 DOI: 10.1111/os.12402  0.32
2018 Zhang ZY, Raza MF, Zheng Z, Zhang X, Dong X, Zhang H. Complete genome sequence of Y-1-1 reveals the genetic basis for its hemicellulosic/cellulosic substrate-inducible xylanase and cellulase activities. 3 Biotech. 8: 465. PMID 30402367 DOI: 10.1007/s13205-018-1490-x  0.6
2018 Sun H, Huang D, Wang H, Zhou B, Wu X, Ma B, Shi J. Association between Serum Copeptin and Stroke in Rural Areas of Northern China: A Matched Case-Control Study. Disease Markers. 2018: 9316162. PMID 30402171 DOI: 10.1155/2018/9316162  0.56
2018 Salawu EO. In Silico Study Reveals How E64 Approaches, Binds to, and Inhibits Falcipain-2 of Plasmodium falciparum that Causes Malaria in Humans. Scientific Reports. 8: 16380. PMID 30401806 DOI: 10.1038/s41598-018-34622-1  0.8
2018 Zhang X, Zhao Y, Cui X, Wang X, Shen H, Chen Z, Huang C, Meruva N, Zhou L, Wang F, Wu L, Luo F. Application and enantiomeric residue determination of diniconazole in tea and grape and apple by supercritical fluid chromatography coupled with quadrupole-time-of-flight mass spectrometry. Journal of Chromatography. A. PMID 30401538 DOI: 10.1016/j.chroma.2018.10.051  0.68
2018 Ting M, Tsao CI, Wang CH, Chi NH, Huang SC, Chou NK, Chen YS, Wang SS. Survival Outcomes of Oversized Cardiac Allografts in Pediatric Patients-A Single-Center Experience in Taiwan. Transplantation Proceedings. 50: 2747-2750. PMID 30401389 DOI: 10.1016/j.transproceed.2018.02.195  0.56
2018 Huang CJ, Chang CH, Cheng KW, Chen CL, Wu SC, Shih TH, Yang SC, Lee YE, Huang CE, Jawan B, Wang CH, Juang SE. Correlation Between Blood Transfusion and Blood Glucose Levels in Adult Living Donor Liver Transplantation. Transplantation Proceedings. 50: 2645-2647. PMID 30401367 DOI: 10.1016/j.transproceed.2018.02.203  0.4
2018 Sakaki J, Melough M, Lee SG, Kalinowski J, Koo SI, Lee SK, Chun OK. Blackcurrant Supplementation Improves Trabecular Bone Mass in Young but Not Aged Mice. Nutrients. 10. PMID 30400569 DOI: 10.3390/nu10111671  0.36
2018 Ke R, Wu YF, McKee GR, Yan Z, Jaehnig K, Xu M, Kriete M, Lu P, Wu T, Morton LA, Qin X, Song XM, Cao JY, Ding XT, Duan XR. Initial beam emission spectroscopy diagnostic system on HL-2A tokamak. The Review of Scientific Instruments. 89: 10D122. PMID 30399666 DOI: 10.1063/1.5039350  0.44
2018 Fan S, Shen W, Liu J, Hei H, Hu R, Hu C, Zhang D, Hu X, Sun D, Chen JH, Ji W, Liu J. Solution-Based Property Tuning of Black Phosphorus. Acs Applied Materials & Interfaces. PMID 30398833 DOI: 10.1021/acsami.8b14887  0.52
2018 Zhang S, Yang Q, Zhou X, Li Z, Wang W, Zang X, Wang C, Shiddiky MJA, Murugulla AC, Nguyen NT, Wang Z, Yamauchi Y. Synthesis of nanoporous poly-melamine-formaldehyde (PMF) based on Schiff base chemistry as a highly efficient adsorbent. The Analyst. PMID 30398492 DOI: 10.1039/c8an01623b  0.44
2018 Wu T, Wu Z, Ma D, Xiang W, Zhang J, Liu H, Deng Y, Tan SZ, Cai X. Fabrication of few-layered porous graphite for removing fluorosurfactant from aqueous solution. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30398350 DOI: 10.1021/acs.langmuir.8b03030  0.4
2018 Hu GH, Duan L, Jiang M, Zhang CL, Duan YY. Wider intraoperative glycemic fluctuation increases risk of acute kidney injury after pediatric cardiac surgery. Renal Failure. 40: 611-617. PMID 30396300 DOI: 10.1080/0886022X.2018.1532908  0.48
2018 Sun S, Li K, Xiao L, Lei Z, Zhang Z. Characterization of polysaccharide from Helicteres angustifolia L. and its immunomodulatory activities on macrophages RAW264.7. Biomedicine & Pharmacotherapy = Biomedecine & Pharmacotherapie. 109: 262-270. PMID 30396084 DOI: 10.1016/j.biopha.2018.10.039  0.32
2018 Ma F. Dynamics and Coherent Control of Exciton-Exciton Annihilation in Aqueous J-Aggregate. The Journal of Physical Chemistry. B. PMID 30395710 DOI: 10.1021/acs.jpcb.8b09891  0.52
2018 Yang Y, Li J, Zhu R, Liu C, Zhang D. Theoretical Insight into the Au(I)-Catalyzed Intermolecular Condensation of Homopropargyl Alcohols with Terminal Alkynes: Reactant Stoichiometric Ratio-Controlled Chemodivergence. The Journal of Organic Chemistry. PMID 30394741 DOI: 10.1021/acs.joc.8b02411  0.56
2018 Yuan Y, Jin M, Xiong J, Zhou Q. Effects of dietary dosage forms of copper supplementation on growth, antioxidant capacity, innate immunity enzyme activities and gene expressions for juvenile Litopenaeus vannamei. Fish & Shellfish Immunology. PMID 30394332 DOI: 10.1016/j.fsi.2018.10.075  0.4
2018 Lemor A, Ramos-Rodriguez AJ, de la Villa R, Hosseini Dehkordi SH, Vazquez de Lara F, Lee S, Rodriguez Rivera M, Casso Dominguez A, Argulian E. Impact of Gender on In-Hospital Outcomes in Patients with Takotsubo syndrome: A Nationwide Analysis from 2006 to 2014. Clinical Cardiology. PMID 30393886 DOI: 10.1002/clc.23109  0.64
2018 Lee SJ, Shin SP, Lee SH, Kang JW, Kook MC, Kim IH, Kim HK. Phase I trial of intravenous Ad5CRT in patients with liver metastasis of gastrointestinal cancers. Cancer Gene Therapy. PMID 30393375 DOI: 10.1038/s41417-018-0055-9  0.68
2018 Chen Y, Wu S, Li W, Wang B, Lv H, Yang X, Khalid BW, Yin X, Xia Y. Gender-Related Association of Serum Uric Acid Levels with Premature Ventricular Contraction. International Heart Journal. PMID 30393260 DOI: 10.1536/ihj.17-474  0.64
2018 Liu J, Guo X, Chen D, Li J, Yue B, Zeng X. Diversification and historical demography of the rapid racerunner (Eremias velox) in relation to geological history and Pleistocene climatic oscillations in arid Central Asia. Molecular Phylogenetics and Evolution. 130: 244-258. PMID 30393185 DOI: 10.1016/j.ympev.2018.10.029  0.44
2018 Amitai A, Chakraborty AK, Kardar M. The low spike density of HIV may have evolved because of the effects of T helper cell depletion on affinity maturation. Plos Computational Biology. 14: e1006408. PMID 30161121 DOI: 10.1371/journal.pcbi.1006408  0.52
2018 Chen H, Chakraborty AK, Kardar M. How nonuniform contact profiles of T cell receptors modulate thymic selection outcomes. Physical Review. E. 97: 032413. PMID 29776088 DOI: 10.1103/PhysRevE.97.032413  0.52
2018 Ovchinnikov V, Louveau JE, Barton JP, Karplus M, Chakraborty AK. Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies. Elife. 7. PMID 29442996 DOI: 10.7554/eLife.33038  0.8
2018 Louie RHY, Kaczorowski KJ, Barton JP, Chakraborty AK, McKay MR. Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies. Proceedings of the National Academy of Sciences of the United States of America. PMID 29311326 DOI: 10.1073/pnas.1717765115  0.8
2017 Amitai A, Mesin L, Victora GD, Kardar M, Chakraborty AK. A Population Dynamics Model for Clonal Diversity in a Germinal Center. Frontiers in Microbiology. 8: 1693. PMID 28955307 DOI: 10.3389/fmicb.2017.01693  0.52
2017 Kaczorowski KJ, Shekhar K, Nkulikiyimfura D, Dekker CL, Maecker H, Davis MM, Chakraborty AK, Brodin P. Continuous immunotypes describe human immune variation and predict diverse responses. Proceedings of the National Academy of Sciences of the United States of America. PMID 28696306 DOI: 10.1073/pnas.1705065114  0.52
2017 Bandaru P, Shah NH, Bhattacharyya M, Barton JP, Kondo Y, Cofsky JC, Gee CL, Chakraborty AK, Kortemme T, Ranganathan R, Kuriyan J. Deconstruction of the Ras switching cycle through saturation mutagenesis. Elife. 6. PMID 28686159 DOI: 10.7554/eLife.27810  0.8
2017 Chakraborty AK, Barton J. Rational design of vaccine targets and strategies for HIV: a crossroad of statistical physics, biology, and medicine. Reports On Progress in Physics. Physical Society (Great Britain). PMID 28059778 DOI: 10.1088/1361-6633/aa574a  0.92
2016 Lorenzi JC, Cohen YZ, Cohn LB, Kreider EF, Barton JP, Learn GH, Oliveira T, Lavine CL, Horwitz JA, Settler A, Jankovic M, Seaman MS, Chakraborty AK, Hahn BH, Caskey M, et al. Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA. Proceedings of the National Academy of Sciences of the United States of America. PMID 27872306 DOI: 10.1073/pnas.1617789113  0.8
2016 Shaffer JS, Moore PL, Kardar M, Chakraborty AK. Optimal immunization cocktails can promote induction of broadly neutralizing Abs against highly mutable pathogens. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791170 DOI: 10.1073/pnas.1614940113  0.52
2016 Tam HH, Melo MB, Kang M, Pelet JM, Ruda VM, Foley MH, Hu JK, Kumari S, Crampton J, Baldeon AD, Sanders RW, Moore JP, Crotty S, Langer R, Anderson DG, ... Chakraborty AK, et al. Sustained antigen availability during germinal center initiation enhances antibody responses to vaccination. Proceedings of the National Academy of Sciences of the United States of America. PMID 27702895 DOI: 10.1073/pnas.1606050113  0.36
2016 Stadinski BD, Shekhar K, Gómez-Touriño I, Jung J, Sasaki K, Sewell AK, Peakman M, Chakraborty AK, Huseby ES. Hydrophobic CDR3 residues promote the development of self-reactive T cells. Nature Immunology. PMID 27348411 DOI: 10.1038/ni.3491  0.32
2016 Barton JP, Goonetilleke N, Butler TC, Walker BD, McMichael AJ, Chakraborty AK. Relative rate and location of intra-host HIV evolution to evade cellular immunity are predictable. Nature Communications. 7: 11660. PMID 27212475 DOI: 10.1038/ncomms11660  1
2016 Lu CL, Murakowski DK, Bournazos S, Schoofs T, Sarkar D, Halper-Stromberg A, Horwitz JA, Nogueira L, Golijanin J, Gazumyan A, Ravetch JV, Caskey M, Chakraborty AK, Nussenzweig MC. Enhanced clearance of HIV-1-infected cells by broadly neutralizing antibodies against HIV-1 in vivo. Science (New York, N.Y.). 352: 1001-4. PMID 27199430 DOI: 10.1126/science.aaf1279  1
2016 Butler TC, Barton JP, Kardar M, Chakraborty AK. Identification of drug resistance mutations in HIV from constraints on natural evolution. Physical Review. E. 93: 022412. PMID 26986367 DOI: 10.1103/PhysRevE.93.022412  0.8
2016 Barton JP, Chakraborty AK, Cocco S, Jacquin H, Monasson R. On the Entropy of Protein Families Journal of Statistical Physics. 162: 1267-1293. DOI: 10.1007/s10955-015-1441-4  0.32
2015 Kang M, Eisen TJ, Eisen EA, Chakraborty AK, Eisen HN. Affinity Inequality among Serum Antibodies That Originate in Lymphoid Germinal Centers. Plos One. 10: e0139222. PMID 26444899 DOI: 10.1371/journal.pone.0139222  1
2015 Shou W, Bergstrom CT, Chakraborty AK, Skinner FK. Theory, models and biology. Elife. 4. PMID 26173204 DOI: 10.7554/eLife.07158  1
2015 Sjölin-Goodfellow H, Frushicheva MP, Ji Q, Cheng DA, Kadlecek TA, Cantor AJ, Kuriyan J, Chakraborty AK, Salomon AR, Weiss A. The catalytic activity of the kinase ZAP-70 mediates basal signaling and negative feedback of the T cell receptor pathway. Science Signaling. 8: ra49. PMID 25990959 DOI: 10.1126/scisignal.2005596  1
2015 Chakraborty AK, Unanue ER. Herman N. Eisen, M.D. (1918-2014): Scholar, Gentleman, and AAI President (1968-1969). Journal of Immunology (Baltimore, Md. : 1950). 194: 2451-2. PMID 25747906 DOI: 10.4049/jimmunol.1590003  0.32
2015 Wang S, Mata-Fink J, Kriegsman B, Hanson M, Irvine DJ, Eisen HN, Burton DR, Wittrup KD, Kardar M, Chakraborty AK. Manipulating the selection forces during affinity maturation to generate cross-reactive HIV antibodies. Cell. 160: 785-97. PMID 25662010 DOI: 10.1016/j.cell.2015.01.027  1
2015 Barton JP, Kardar M, Chakraborty AK. Scaling laws describe memories of host-pathogen riposte in the HIV population. Proceedings of the National Academy of Sciences of the United States of America. 112: 1965-70. PMID 25646424 DOI: 10.1073/pnas.1415386112  1
2014 Chakraborty AK, Unanue ER. Herman Eisen (1918-2014). Immunity. 41: 869-70. PMID 25667944  0.32
2014 Chakraborty AK. Understanding immunology: fun at an intersection of the physical, life, and clinical sciences. Physical Biology. 11: 053014. PMID 25292176 DOI: 10.1088/1478-3975/11/5/053014  1
2014 Stepanek O, Prabhakar AS, Osswald C, King CG, Bulek A, Naeher D, Beaufils-Hugot M, Abanto ML, Galati V, Hausmann B, Lang R, Cole DK, Huseby ES, Sewell AK, Chakraborty AK, et al. Coreceptor scanning by the T cell receptor provides a mechanism for T cell tolerance. Cell. 159: 333-45. PMID 25284152 DOI: 10.1016/j.cell.2014.08.042  1
2014 Chakraborty AK, Weiss A. Insights into the initiation of TCR signaling. Nature Immunology. 15: 798-807. PMID 25137454 DOI: 10.1038/ni.2940  1
2014 Mann JK, Barton JP, Ferguson AL, Omarjee S, Walker BD, Chakraborty A, Ndung'u T. The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing. Plos Computational Biology. 10: e1003776. PMID 25102049 DOI: 10.1371/journal.pcbi.1003776  1
2014 Chakraborty AK, Hossain ME, Rhaman MM, Sobahan KM. Fabrication of Bi2O3/TiO2 nanocomposites and their applications to the degradation of pollutants in air and water under visible-light. Journal of Environmental Sciences (China). 26: 458-65. PMID 25076538 DOI: 10.1016/S1001-0742(13)60428-3  0.52
2014 Iversen L, Tu HL, Lin WC, Christensen SM, Abel SM, Iwig J, Wu HJ, Gureasko J, Rhodes C, Petit RS, Hansen SD, Thill P, Yu CH, Stamou D, Chakraborty AK, et al. Molecular kinetics. Ras activation by SOS: allosteric regulation by altered fluctuation dynamics. Science (New York, N.Y.). 345: 50-4. PMID 24994643 DOI: 10.1126/science.1250373  1
2014 Saha DK, Hasan KM, Rahman SM, Majumder SK, Zahid MK, Chakraborty AK, Bari MS. Neonatal uterine prolapse - a case report. Mymensingh Medical Journal : Mmj. 23: 401-5. PMID 24858176  1
2014 Quadeer AA, Louie RH, Shekhar K, Chakraborty AK, Hsing IM, McKay MR. Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design. Journal of Virology. 88: 7628-44. PMID 24760894 DOI: 10.1128/JVI.03812-13  1
2014 Avalos AM, Bilate AM, Witte MD, Tai AK, He J, Frushicheva MP, Thill PD, Meyer-Wentrup F, Theile CS, Chakraborty AK, Zhuang X, Ploegh HL. Monovalent engagement of the BCR activates ovalbumin-specific transnuclear B cells. The Journal of Experimental Medicine. 211: 365-79. PMID 24493799 DOI: 10.1084/jem.20131603  1
2014 Shekhar K, Brodin P, Davis MM, Chakraborty AK. Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE). Proceedings of the National Academy of Sciences of the United States of America. 111: 202-7. PMID 24344260 DOI: 10.1073/pnas.1321405111  1
2014 Quadeer AA, Louie RHY, Shekhar K, Chakraborty AK, Hsing I, McKay MR. Discovering statistical vulnerabilities in highly mutable viruses: A random matrix approach Ieee Workshop On Statistical Signal Processing Proceedings. 5-8. DOI: 10.1109/SSP.2014.6884561  1
2014 Chakraborty AK, Rhaman MM, Hossain ME, Sobahan KMA. Preparation of WO3/TiO2/In2O3 composite structures and their enhanced photocatalytic activity under visible light irradiation Reaction Kinetics, Mechanisms and Catalysis. 111: 371-382. DOI: 10.1007/s11144-013-0623-9  0.52
2014 Mathew AK, Bhui I, Banerjee SN, Goswami R, Chakraborty AK, Shome A, Balachandran S, Chaudhury S. Biogas production from locally available aquatic weeds of Santiniketan through anaerobic digestion Clean Technologies and Environmental Policy. DOI: 10.1007/s10098-014-0877-6  0.36
2013 Shekhar K, Ruberman CF, Ferguson AL, Barton JP, Kardar M, Chakraborty AK. Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 062705. PMID 24483484 DOI: 10.1103/PhysRevE.88.062705  1
2013 Ferguson AL, Falkowska E, Walker LM, Seaman MS, Burton DR, Chakraborty AK. Computational prediction of broadly neutralizing HIV-1 antibody epitopes from neutralization activity data. Plos One. 8: e80562. PMID 24312481 DOI: 10.1371/journal.pone.0080562  1
2013 Sok D, Laserson U, Laserson J, Liu Y, Vigneault F, Julien JP, Briney B, Ramos A, Saye KF, Le K, Mahan A, Wang S, Kardar M, Yaari G, Walker LM, ... ... Chakraborty AK, et al. The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies. Plos Pathogens. 9: e1003754. PMID 24278016 DOI: 10.1371/journal.ppat.1003754  0.52
2013 Barouch DH, Whitney JB, Moldt B, Klein F, Oliveira TY, Liu J, Stephenson KE, Chang HW, Shekhar K, Gupta S, Nkolola JP, Seaman MS, Smith KM, Borducchi EN, Cabral C, ... ... Chakraborty AK, et al. Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys. Nature. 503: 224-8. PMID 24172905 DOI: 10.1038/nature12744  1
2013 Govern CC, Chakraborty AK. Stochastic responses may allow genetically diverse cell populations to optimize performance with simpler signaling networks. Plos One. 8: e65086. PMID 23950860 DOI: 10.1371/journal.pone.0065086  1
2013 Hoerter JA, Brzostek J, Artyomov MN, Abel SM, Casas J, Rybakin V, Ampudia J, Lotz C, Connolly JM, Chakraborty AK, Gould KG, Gascoigne NR. Coreceptor affinity for MHC defines peptide specificity requirements for TCR interaction with coagonist peptide-MHC. The Journal of Experimental Medicine. 210: 1807-21. PMID 23940257 DOI: 10.1084/jem.20122528  1
2013 Butler TC, Kardar M, Chakraborty AK. Quorum sensing allows T cells to discriminate between self and nonself. Proceedings of the National Academy of Sciences of the United States of America. 110: 11833-8. PMID 23818603 DOI: 10.1073/pnas.1222467110  1
2013 Chakraborty AK, Roose JP. Biochemical heterogeneity and developmental varieties in T-cell leukemia. Cell Cycle (Georgetown, Tex.). 12: 1480-1. PMID 23652920 DOI: 10.4161/cc.24858  1
2013 Jun JE, Yang M, Chen H, Chakraborty AK, Roose JP. Activation of extracellular signal-regulated kinase but not of p38 mitogen-activated protein kinase pathways in lymphocytes requires allosteric activation of SOS. Molecular and Cellular Biology. 33: 2470-84. PMID 23589333 DOI: 10.1128/MCB.01593-12  1
2013 Hartzell C, Ksionda O, Lemmens E, Coakley K, Yang M, Dail M, Harvey RC, Govern C, Bakker J, Lenstra TL, Ammon K, Boeter A, Winter SS, Loh M, Shannon K, ... Chakraborty AK, et al. Dysregulated RasGRP1 responds to cytokine receptor input in T cell leukemogenesis. Science Signaling. 6: ra21. PMID 23532335 DOI: 10.1126/scisignal.2003848  1
2013 Ferguson AL, Mann JK, Omarjee S, Ndung'u T, Walker BD, Chakraborty AK. Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design. Immunity. 38: 606-17. PMID 23521886 DOI: 10.1016/j.immuni.2012.11.022  1
2013 Eisen HN, Chakraborty AK. Immunopaleontology reveals how affinity enhancement is achieved during affinity maturation of antibodies to influenza virus. Proceedings of the National Academy of Sciences of the United States of America. 110: 7-8. PMID 23284164 DOI: 10.1073/pnas.1219396110  1
2013 Košmrlj A, Kardar M, Chakraborty AK. Statistical physics of T-cell development and pathogen specificity Annual Review of Condensed Matter Physics. 4: 339-360. DOI: 10.1146/annurev-conmatphys-030212-184325  1
2013 Sarkar S, Acharya S, Chakraborty A, Pradhan N. Zinc blende 0D quantum dots to wurtzite 1D quantum wires: The oriented attachment and phase change in ZnSe nanostructures Journal of Physical Chemistry Letters. 4: 3292-3297. DOI: 10.1021/jz401816e  1
2013 Dar BA, Chakraborty A, Sharma PR, Shrivastava V, Bhowmik A, Vyas D, Bhatti P, Sharma M, Singh B. Grinding-induced rapid, convenient and solvent free approach for the one pot synthesis of α-aminophosphonates using aluminium pillared interlayered clay catalyst Journal of Industrial and Engineering Chemistry. 19: 732-738. DOI: 10.1016/j.jiec.2012.10.018  1
2013 Chakraborty AK, Shanjeda Akter M, Ahsanul Haque M, Arifuzzaman Khan GM, Shamsul Alam M. Synthesis of Co3O4/WO3 Nanoheterojunction Photocatalyst for the Decomposition of Organic Pollutants Under Visible Light Irradiation Journal of Cluster Science. 24: 701-713. DOI: 10.1007/s10876-013-0559-2  0.52
2013 Haque MA, Khan GMA, Razzaque SMA, Khatun K, Chakraborty AK, Alam MS. Extraction of rubiadin dye from Swietenia mahagoni and its dyeing characteristics onto silk fabric using metallic mordants Indian Journal of Fibre and Textile Research. 38: 280-284.  0.52
2012 Read EL, Tovo-Dwyer AA, Chakraborty AK. Stochastic effects are important in intrahost HIV evolution even when viral loads are high. Proceedings of the National Academy of Sciences of the United States of America. 109: 19727-32. PMID 23112156 DOI: 10.1073/pnas.1206940109  1
2012 Chung W, Abel SM, Chakraborty AK. Protein clusters on the T cell surface may suppress spurious early signaling events. Plos One. 7: e44444. PMID 22973450 DOI: 10.1371/journal.pone.0044444  1
2012 Fowler KD, Kuchroo VK, Chakraborty AK. A model for how signal duration can determine distinct outcomes of gene transcription programs. Plos One. 7: e33018. PMID 22427931 DOI: 10.1371/journal.pone.0033018  1
2012 Govern CC, Yang M, Chakraborty AK. Identifying dynamical bottlenecks of stochastic transitions in biochemical networks. Physical Review Letters. 108: 058102. PMID 22400965 DOI: 10.1103/PhysRevLett.108.058102  1
2012 Abel SM, Roose JP, Groves JT, Weiss A, Chakraborty AK. The membrane environment can promote or suppress bistability in cell signaling networks. The Journal of Physical Chemistry. B. 116: 3630-40. PMID 22332778 DOI: 10.1021/jp2102385  1
2012 Rawal SB, Chakraborty AK, Kim YJ, Kim HJ, Lee WI. Double-heterojunction structure of Sb xSn 1-xO 2/TiO 2/CdSe for efficient decomposition of gaseous 2-propanol under visible-light irradiation Rsc Advances. 2: 622-630. DOI: 10.1039/c1ra00551k  0.52
2012 Murugan NA, Dasgupta I, Chakraborty A, Ganguli N, Kongsted J, Ågren H. How crucial are finite temperature and solvent effects on structure and absorption spectra of Si10? Journal of Physical Chemistry C. 116: 26618-26624. DOI: 10.1021/jp308737u  1
2012 Dar B, Singh A, Sahu A, Patidar P, Chakraborty A, Sharma M, Singh B. Catalyst and solvent-free, ultrasound promoted rapid protocol for the one-pot synthesis of α-aminophosphonates at room temperature Tetrahedron Letters. 53: 5497-5502. DOI: 10.1016/j.tetlet.2012.07.123  1
2012 Chakraborty AK, Kebede MA. Preparation and characterization of WO 3/Bi 3O 4Cl nanocomposite and its photocatalytic behavior under visible light irradiation Reaction Kinetics, Mechanisms and Catalysis. 106: 83-98. DOI: 10.1007/s11144-012-0423-7  0.52
2012 Košmrlj A, Kardar M, Chakraborty AK. The Influence of T Cell Development on Pathogen Specificity and Autoreactivity Journal of Statistical Physics. 149: 203-219. DOI: 10.1007/s10955-011-0403-8  1
2012 Chakraborty AK, Ganguli S, Kebede MA. Photocatalytic Degradation of 2-Propanol and Phenol Using Au Loaded MnWO 4 Nanorod Under Visible Light Irradiation Journal of Cluster Science. 23: 437-448. DOI: 10.1007/s10876-012-0450-6  0.52
2012 Chakraborty AK, Kebede MA. Efficient Decomposition of Organic Pollutants Over In 2O 3/TiO 2 Nanocomposite Photocatalyst Under Visible Light Irradiation Journal of Cluster Science. 23: 247-257. DOI: 10.1007/s10876-011-0425-z  0.52
2012 Arifuzzaman Khan GM, Shahrear Palash SR, Shamsul Alam M, Chakraborty AK, Gafur MA, Terano M. Isolation and characterization of betel nut leaf fiber: Its potential application in making composites Polymer Composites. 33: 764-772. DOI: 10.1002/pc.22204  0.52
2011 Stone JD, Artyomov MN, Chervin AS, Chakraborty AK, Eisen HN, Kranz DM. Interaction of streptavidin-based peptide-MHC oligomers (tetramers) with cell-surface TCRs. Journal of Immunology (Baltimore, Md. : 1950). 187: 6281-90. PMID 22102724 DOI: 10.4049/jimmunol.1101734  1
2011 Dahirel V, Shekhar K, Pereyra F, Miura T, Artyomov M, Talsania S, Allen TM, Altfeld M, Carrington M, Irvine DJ, Walker BD, Chakraborty AK. Coordinate linkage of HIV evolution reveals regions of immunological vulnerability. Proceedings of the National Academy of Sciences of the United States of America. 108: 11530-5. PMID 21690407 DOI: 10.1073/pnas.1105315108  1
2011 Wolfson MY, Nam K, Chakraborty AK. The effect of mutations on the alloreactive T cell receptor/peptide-MHC interface structure: a molecular dynamics study. The Journal of Physical Chemistry. B. 115: 8317-27. PMID 21651302 DOI: 10.1021/jp202471d  1
2011 Riese MJ, Grewal J, Das J, Zou T, Patil V, Chakraborty AK, Koretzky GA. Decreased diacylglycerol metabolism enhances ERK activation and augments CD8+ T cell functional responses. The Journal of Biological Chemistry. 286: 5254-65. PMID 21138839 DOI: 10.1074/jbc.M110.171884  1
2011 Chakraborty AK, Rawal SB, Han SY, Chai SY, Lee WI. Enhancement of visible-light photocatalytic efficiency of BiOCl/Bi 2O 3 by surface modification with WO 3 Applied Catalysis a: General. 407: 217-223. DOI: 10.1016/j.apcata.2011.08.040  0.52
2010 Eisen HN, Chakraborty AK. Evolving concepts of specificity in immune reactions. Proceedings of the National Academy of Sciences of the United States of America. 107: 22373-80. PMID 21173256 DOI: 10.1073/pnas.1012051108  1
2010 Kong Z, Raghavan P, Xie D, Boike T, Burma S, Chen D, Chakraborty A, Hsieh JT, Saha D. Epothilone B confers radiation dose enhancement in DAB2IP gene knock-down radioresistant prostate cancer cells. International Journal of Radiation Oncology, Biology, Physics. 78: 1210-8. PMID 20970033 DOI: 10.1016/j.ijrobp.2010.06.019  1
2010 Mouquet H, Scheid JF, Zoller MJ, Krogsgaard M, Ott RG, Shukair S, Artyomov MN, Pietzsch J, Connors M, Pereyra F, Walker BD, Ho DD, Wilson PC, Seaman MS, Eisen HN, ... Chakraborty AK, et al. Polyreactivity increases the apparent affinity of anti-HIV antibodies by heteroligation. Nature. 467: 591-5. PMID 20882016 DOI: 10.1038/nature09385  1
2010 Artomov M, Kardar M, Chakraborty AK. Only signaling modules that discriminate sharply between stimulatory and nonstimulatory inputs require basal signaling for fast cellular responses. The Journal of Chemical Physics. 133: 105101. PMID 20849190 DOI: 10.1063/1.3482813  1
2010 Dustin ML, Chakraborty AK, Shaw AS. Understanding the structure and function of the immunological synapse. Cold Spring Harbor Perspectives in Biology. 2: a002311. PMID 20843980 DOI: 10.1101/cshperspect.a002311  1
2010 Artyomov MN, Lis M, Devadas S, Davis MM, Chakraborty AK. CD4 and CD8 binding to MHC molecules primarily acts to enhance Lck delivery. Proceedings of the National Academy of Sciences of the United States of America. 107: 16916-21. PMID 20837541 DOI: 10.1073/pnas.1010568107  1
2010 Artyomov MN, Meissner A, Chakraborty AK. A model for genetic and epigenetic regulatory networks identifies rare pathways for transcription factor induced pluripotency. Plos Computational Biology. 6: e1000785. PMID 20485562 DOI: 10.1371/journal.pcbi.1000785  1
2010 Kosmrlj A, Read EL, Qi Y, Allen TM, Altfeld M, Deeks SG, Pereyra F, Carrington M, Walker BD, Chakraborty AK. Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection. Nature. 465: 350-4. PMID 20445539 DOI: 10.1038/nature08997  1
2010 Govern CC, Paczosa MK, Chakraborty AK, Huseby ES. Fast on-rates allow short dwell time ligands to activate T cells. Proceedings of the National Academy of Sciences of the United States of America. 107: 8724-9. PMID 20421471 DOI: 10.1073/pnas.1000966107  1
2010 Chakraborty AK, Kosmrlj A. Statistical mechanical concepts in immunology. Annual Review of Physical Chemistry. 61: 283-303. PMID 20367082 DOI: 10.1146/annurev.physchem.59.032607.093537  1
2010 Kong Z, Xie D, Boike T, Raghavan P, Burma S, Chen DJ, Habib AA, Chakraborty A, Hsieh JT, Saha D. Downregulation of human DAB2IP gene expression in prostate cancer cells results in resistance to ionizing radiation. Cancer Research. 70: 2829-39. PMID 20332235 DOI: 10.1158/0008-5472.CAN-09-2919  1
2010 Govern CC, Chakraborty AK. For T cell receptors, some breakups might not last forever. Immunity. 32: 141-2. PMID 20189475 DOI: 10.1016/j.immuni.2010.02.005  1
2010 Chakraborty AK, Das J. Pairing computation with experimentation: a powerful coupling for understanding T cell signalling. Nature Reviews. Immunology. 10: 59-71. PMID 20029448 DOI: 10.1038/nri2688  1
2010 Gao B, Chakraborty AK, Yang JM, Lee WI. Visible-light photocatalytic activity of BiOCl/Bi3O 4Cl nanocomposites Bulletin of the Korean Chemical Society. 31: 1941-1944. DOI: 10.5012/bkcs.2010.31.7.1941  0.52
2010 Chakraborty AK, Qi Z, Chai SY, Lee C, Park SY, Jang DJ, Lee WI. Formation of highly crystallized TiO2(B) and its photocatalytic behavior Applied Catalysis B: Environmental. 93: 368-375. DOI: 10.1016/j.apcatb.2009.10.010  0.52
2010 Chakraborty AK. Seeing in numbers Scientist. 24.  1
2009 Artyomov MN, Mathur M, Samoilov MS, Chakraborty AK. Stochastic bimodalities in deterministically monostable reversible chemical networks due to network topology reduction. The Journal of Chemical Physics. 131: 195103. PMID 19929080 DOI: 10.1063/1.3264948  1
2009 Kosmrlj A, Chakraborty AK, Kardar M, Shakhnovich EI. Thymic selection of T-cell receptors as an extreme value problem. Physical Review Letters. 103: 068103. PMID 19792616 DOI: 10.1103/PhysRevLett.103.068103  1
2009 Lis M, Artyomov MN, Devadas S, Chakraborty AK. Efficient stochastic simulation of reaction-diffusion processes via direct compilation. Bioinformatics (Oxford, England). 25: 2289-91. PMID 19578038 DOI: 10.1093/bioinformatics/btp387  1
2009 Das J, Fréchet JM, Chakraborty AK. Self-Assembly of Dendronized Polymers. The Journal of Physical Chemistry. B. 113: 13768-75. PMID 19572661 DOI: 10.1021/jp902927p  1
2009 Das J, Kardar M, Chakraborty AK. Positive feedback regulation results in spatial clustering and fast spreading of active signaling molecules on a cell membrane. The Journal of Chemical Physics. 130: 245102. PMID 19566183 DOI: 10.1063/1.3149861  1
2009 Le Borgne M, Ladi E, Dzhagalov I, Herzmark P, Liao YF, Chakraborty AK, Robey EA. The impact of negative selection on thymocyte migration in the medulla. Nature Immunology. 10: 823-30. PMID 19543275 DOI: 10.1038/ni.1761  1
2009 Chakraborty AK, Das J, Zikherman J, Yang M, Govern CC, Ho M, Weiss A, Roose J. Molecular origin and functional consequences of digital signaling and hysteresis during Ras activation in lymphocytes. Science Signaling. 2: pt2. PMID 19366993 DOI: 10.1126/scisignal.266pt2  1
2009 Das J, Ho M, Zikherman J, Govern C, Yang M, Weiss A, Chakraborty AK, Roose JP. Digital signaling and hysteresis characterize ras activation in lymphoid cells. Cell. 136: 337-51. PMID 19167334 DOI: 10.1016/j.cell.2008.11.051  1
2009 Prasad A, Zikherman J, Das J, Roose JP, Weiss A, Chakraborty AK. Origin of the sharp boundary that discriminates positive and negative selection of thymocytes. Proceedings of the National Academy of Sciences of the United States of America. 106: 528-33. PMID 19098101 DOI: 10.1073/pnas.0805981105  1
2009 Rawal SB, Chakraborty AK, Lee WI. Heterojunction of FeOOH and TiO2 for the formation of visible light photocatalyst Bulletin of the Korean Chemical Society. 30: 2613-2616. DOI: 10.5012/bkcs.2009.30.11.2613  0.52
2009 Kim YJ, Gao B, Han SY, Jung MH, Chakraborty AK, Ko T, Lee C, Lee WI. Heterojunction of FeTiO3 nanodisc and TiO2 nanoparticle for a novel visible light photocatalyst Journal of Physical Chemistry C. 113: 19179-19184. DOI: 10.1021/jp908874k  0.52
2009 Chai SY, Kim YJ, Jung MH, Chakraborty AK, Jung D, Lee WI. Heterojunctioned BiOCl/Bi2O3, a new visible light photocatalyst Journal of Catalysis. 262: 144-149. DOI: 10.1016/j.jcat.2008.12.020  0.52
2009 Ho TC, Chakraborty AK. Editorial Chemical Engineering Science. 64: 4461-4462. DOI: 10.1016/j.ces.2009.08.001  1
2008 Kosmrlj A, Jha AK, Huseby ES, Kardar M, Chakraborty AK. How the thymus designs antigen-specific and self-tolerant T cell receptor sequences. Proceedings of the National Academy of Sciences of the United States of America. 105: 16671-6. PMID 18946038 DOI: 10.1073/pnas.0808081105  1
2008 Kong LY, Abou-Ghazal MK, Wei J, Chakraborty A, Sun W, Qiao W, Fuller GN, Fokt I, Grimm EA, Schmittling RJ, Archer GE, Sampson JH, Priebe W, Heimberger AB. A novel inhibitor of signal transducers and activators of transcription 3 activation is efficacious against established central nervous system melanoma and inhibits regulatory T cells. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 14: 5759-68. PMID 18794085 DOI: 10.1158/1078-0432.CCR-08-0377  1
2008 Cemerski S, Das J, Giurisato E, Markiewicz MA, Allen PM, Chakraborty AK, Shaw AS. The balance between T cell receptor signaling and degradation at the center of the immunological synapse is determined by antigen quality. Immunity. 29: 414-22. PMID 18760640 DOI: 10.1016/j.immuni.2008.06.014  1
2008 Tong Z, Kunnumakkara AB, Wang H, Matsuo Y, Diagaradjane P, Harikumar KB, Ramachandran V, Sung B, Chakraborty A, Bresalier RS, Logsdon C, Aggarwal BB, Krishnan S, Guha S. Neutrophil gelatinase-associated lipocalin: A novel suppressor of invasion and angiogenesis in pancreatic cancer Cancer Research. 68: 6100-6108. PMID 18676832 DOI: 10.1158/0008-5472.CAN-08-0540  1
2008 Locasale JW, Chakraborty AK. Regulation of signal duration and the statistical dynamics of kinase activation by scaffold proteins. Plos Computational Biology. 4: e1000099. PMID 18584022 DOI: 10.1371/journal.pcbi.1000099  1
2008 Zheng H, Jin B, Henrickson SE, Perelson AS, von Andrian UH, Chakraborty AK. How antigen quantity and quality determine T-cell decisions in lymphoid tissue. Molecular and Cellular Biology. 28: 4040-51. PMID 18426917 DOI: 10.1128/MCB.00136-08  1
2008 Henrickson SE, Mempel TR, Mazo IB, Liu B, Artyomov MN, Zheng H, Peixoto A, Flynn M, Senman B, Junt T, Wong HC, Chakraborty AK, von Andrian UH. In vivo imaging of T cell priming. Science Signaling. 1: pt2. PMID 18364513 DOI: 10.1126/stke.112pt2  1
2008 Henrickson SE, Mempel TR, Mazo IB, Liu B, Artyomov MN, Zheng H, Peixoto A, Flynn MP, Senman B, Junt T, Wong HC, Chakraborty AK, von Andrian UH. T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation. Nature Immunology. 9: 282-91. PMID 18204450 DOI: 10.1038/ni1559  1
2008 Dustin ML, Chakraborty AK. Tug of war at the exit door. Immunity. 28: 15-7. PMID 18199414 DOI: 10.1016/j.immuni.2008.01.001  1
2007 Artyomov MN, Das J, Kardar M, Chakraborty AK. Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities. Proceedings of the National Academy of Sciences of the United States of America. 104: 18958-63. PMID 18025473 DOI: 10.1073/pnas.0706110104  1
2007 Pathak AK, Bhutani M, Nair AS, Ahn KS, Chakraborty A, Kadara H, Guha S, Sethi G, Aggarwal BB. Ursolic acid inhibits STAT3 activation pathway leading to suppression of proliferation and chemosensitization of human multiple myeloma cells. Molecular Cancer Research : McR. 5: 943-55. PMID 17855663 DOI: 10.1158/1541-7786.MCR-06-0348  1
2007 Locasale JW, Shaw AS, Chakraborty AK. Scaffold proteins confer diverse regulatory properties to protein kinase cascades. Proceedings of the National Academy of Sciences of the United States of America. 104: 13307-12. PMID 17686969 DOI: 10.1073/pnas.0706311104  1
2007 Chakraborty A, Guha S. Granulocyte Colony-Stimulating Factor/Granulocyte Colony-Stimulating Factor Receptor Biological Axis Promotes Survival and Growth of Bladder Cancer Cells Urology. 69: 1210-1215. PMID 17572226 DOI: 10.1016/j.urology.2007.02.035  1
2007 Grotenbreg GM, Nicholson MJ, Fowler KD, Wilbuer K, Octavio L, Yang M, Chakraborty AK, Ploegh HL, Wucherpfennig KW. Empty class II major histocompatibility complex created by peptide photolysis establishes the role of DM in peptide association. The Journal of Biological Chemistry. 282: 21425-36. PMID 17525157 DOI: 10.1074/jbc.M702844200  1
2007 Wylie DC, Das J, Chakraborty AK. Sensitivity of T cells to antigen and antagonism emerges from differential regulation of the same molecular signaling module. Proceedings of the National Academy of Sciences of the United States of America. 104: 5533-8. PMID 17360359 DOI: 10.1073/pnas.0611482104  1
2007 Cemerski S, Das J, Locasale J, Arnold P, Giurisato E, Markiewicz MA, Fremont D, Allen PM, Chakraborty AK, Shaw AS. The stimulatory potency of T cell antigens is influenced by the formation of the immunological synapse. Immunity. 26: 345-55. PMID 17346997 DOI: 10.1016/j.immuni.2007.01.013  1
2007 Chakraborty A, Brooks H, Zhang P, Smith W, McReynolds MR, Hoying JB, Bick R, Truong L, Poindexter B, Lan H, Elbjeirami W, Sheikh-Hamad D. Stanniocalcin-1 regulates endothelial gene expression and modulates transendothelial migration of leukocytes. American Journal of Physiology. Renal Physiology. 292: F895-904. PMID 17032941 DOI: 10.1152/ajprenal.00219.2006  1
2006 Shao Y, Molnar LF, Jung Y, Kussmann J, Ochsenfeld C, Brown ST, Gilbert AT, Slipchenko LV, Levchenko SV, O'Neill DP, DiStasio RA, Lochan RC, Wang T, Beran GJ, Besley NA, ... ... Chakraborty AK, et al. Advances in methods and algorithms in a modern quantum chemistry program package. Physical Chemistry Chemical Physics : Pccp. 8: 3172-91. PMID 16902710 DOI: 10.1039/b517914a  1
2006 Chakraborty A, White SM, Guha S. Granulocyte colony-stimulating receptor promotes β1-integrin-mediated adhesion and invasion of bladder cancer cells Urology. 68: 208-213. PMID 16844458 DOI: 10.1016/j.urology.2006.01.046  1
2006 Chempath S, Predescu C, Bell AT. Quantum mechanical single molecule partition function from path integral Monte Carlo simulations. The Journal of Chemical Physics. 124: 234101. PMID 16821901 DOI: 10.1063/1.2196885  1
2006 Wylie DC, Hori Y, Dinner AR, Chakraborty AK. A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields. The Journal of Physical Chemistry. B. 110: 12749-65. PMID 16800611 DOI: 10.1021/jp056231f  1
2006 Liu J, Groves JT, Chakraborty AK. Kinetic pathways of phase ordering in lipid raft model systems. The Journal of Physical Chemistry. B. 110: 8416-21. PMID 16623527 DOI: 10.1021/jp054855f  1
2006 Eide JL, Chakraborty AK, Oster GF. Simple models for extracting mechanical work from the ATP hydrolysis cycle Biophysical Journal. 90: 4281-4294. PMID 16581833 DOI: 10.1529/biophysj.105.073320  1
2006 Qi S, Krogsgaard M, Davis MM, Chakraborty AK. Molecular flexibility can influence the stimulatory ability of receptor-ligand interactions at cell-cell junctions. Proceedings of the National Academy of Sciences of the United States of America. 103: 4416-21. PMID 16537380 DOI: 10.1073/pnas.0510991103  1
2006 Eide JL, Chakraborty AK. Effects of quenched and annealed macromolecular crowding elements on a simple model for signaling in T lymphocytes. The Journal of Physical Chemistry. B. 110: 2318-24. PMID 16471819 DOI: 10.1021/jp054191+  1
2006 Stachowiak JC, Yue M, Castelino K, Chakraborty A, Majumdar A. Chemomechanics of surface stresses induced by DNA hybridization. Langmuir : the Acs Journal of Surfaces and Colloids. 22: 263-8. PMID 16378430 DOI: 10.1021/la0521645  1
2006 Gomez ED, Das J, Chakraborty AK, Pople JA, Balsara NP. Effect of cross-linking on the structure and thermodynamics of lamellar block copolymers Macromolecules. 39: 4848-4859. DOI: 10.1021/ma052323r  1
2005 Liu J, Qi S, Groves JT, Chakraborty AK. Phase segregation on different length scales in a model cell membrane system. The Journal of Physical Chemistry. B. 109: 19960-9. PMID 16853581 DOI: 10.1021/jp053562j  1
2005 Das J, Yoshida M, Fresco ZM, Choi TL, Fréchet JM, Chakraborty AK. A dendronized polymer is a single-molecule glass. The Journal of Physical Chemistry. B. 109: 6535-43. PMID 16851734 DOI: 10.1021/jp058081e  1
2005 Witt CM, Raychaudhuri S, Schaefer B, Chakraborty AK, Robey EA. Directed migration of positively selected thymocytes visualized in real time. Plos Biology. 3: e160. PMID 15869324 DOI: 10.1371/journal.pbio.0030160  1
2005 Chempath S, Zerella M, Chakraborty A, Bell AT. Dft study of methane to acetic acid conversion by Pd(II) in sulfuric acid Aiche Annual Meeting, Conference Proceedings. 11561.  1
2004 Hagan MF, Chakraborty AK. Hybridization dynamics of surface immobilized DNA. The Journal of Chemical Physics. 120: 4958-68. PMID 15267358 DOI: 10.1063/1.1645786  1
2004 Li QJ, Dinner AR, Qi S, Irvine DJ, Huppa JB, Davis MM, Chakraborty AK. CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse. Nature Immunology. 5: 791-9. PMID 15247914 DOI: 10.1038/ni1095  1
2003 Raychaudhuri S, Chakraborty AK, Kardar M. Effective membrane model of the immunological synapse. Physical Review Letters. 91: 208101. PMID 14683399 DOI: 10.1103/PhysRevLett.91.208101  0.52
2003 Hagan MF, Dinner AR, Chandler D, Chakraborty AK. Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA. Proceedings of the National Academy of Sciences of the United States of America. 100: 13922-7. PMID 14617777 DOI: 10.1073/pnas.2036378100  1
2003 Chakraborty AK, Dustin ML, Shaw AS. In silico models for cellular and molecular immunology: successes, promises and challenges. Nature Immunology. 4: 933-6. PMID 14515121 DOI: 10.1038/ni1003-933  1
2003 Lee KH, Dinner AR, Tu C, Campi G, Raychaudhuri S, Varma R, Sims TN, Burack WR, Wu H, Wang J, Kanagawa O, Markiewicz M, Allen PM, Dustin ML, Chakraborty AK, et al. The immunological synapse balances T cell receptor signaling and degradation. Science (New York, N.Y.). 302: 1218-22. PMID 14512504 DOI: 10.1126/science.1086507  1
2003 Lee SJ, Hori Y, Chakraborty AK. Low T cell receptor expression and thermal fluctuations contribute to formation of dynamic multifocal synapses in thymocytes. Proceedings of the National Academy of Sciences of the United States of America. 100: 4383-8. PMID 12671067 DOI: 10.1073/pnas.0630563100  1
2002 Chakraborty AK. Lighting up TCR takes advantage of serial triggering. Nature Immunology. 3: 895-6. PMID 12352963 DOI: 10.1038/ni1002-895  1
2002 Lee SJ, Hori Y, Groves JT, Dustin ML, Chakraborty AK. The synapse assembly model. Trends in Immunology. 23: 500-2. PMID 12297422 DOI: 10.1016/S1471-4906(02)02325-6  1
2002 Lee SJ, Hori Y, Groves JT, Dustin ML, Chakraborty AK. Correlation of a dynamic model for immunological synapse formation with effector functions: two pathways to synapse formation. Trends in Immunology. 23: 492-9. PMID 12297421 DOI: 10.1016/S1471-4906(02)02285-8  1
2002 Chakraborty AK. How and why does the immunological synapse form? Physical chemistry meets cell biology. Science's Stke : Signal Transduction Knowledge Environment. 2002: pe10. PMID 11880685 DOI: 10.1126/stke.2002.122.pe10  1
2001 Chakraborty AK, Golumbfskie AJ. Polymer adsorption-driven self-assembly of nanostructures. Annual Review of Physical Chemistry. 52: 537-73. PMID 11326074 DOI: 10.1146/annurev.physchem.52.1.537  1
1999 Golumbfskie AJ, Pande VS, Chakraborty AK. Simulation of biomimetic recognition between polymers and surfaces. Proceedings of the National Academy of Sciences of the United States of America. 96: 11707-12. PMID 10518514 DOI: 10.1073/pnas.96.21.11707  1
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