Martin T. Zanni - Publications

Affiliations: 
Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
2D IR spectroscopy
Website:
http://www.chem.wisc.edu/users/zanni

159 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Alperstein AM, Ostrander JS, Zhang TO, Zanni MT. Amyloid found in human cataracts with two-dimensional infrared spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 30894486 DOI: 10.1073/pnas.1821534116  0.96
2019 Kearns NM, Jones AC, Bohlmann Kunz M, Allen RT, Flach JT, Zanni MT. Two-Dimensional White-Light Spectroscopy Using Supercontinuum from an All-Normal Dispersion Photonic Crystal Fiber Pumped by a 70 MHz Yb Fiber Oscillator. The Journal of Physical Chemistry. A. PMID 30855955 DOI: 10.1021/acs.jpca.9b02206  0.48
2019 Petti MK, Ostrander JS, Saraswat V, Birdsall ER, Rich KL, Lomont JP, Arnold MS, Zanni MT. Enhancing the signal strength of surface sensitive 2D IR spectroscopy. The Journal of Chemical Physics. 150: 024707. PMID 30646693 DOI: 10.1063/1.5065511  0.96
2018 Mandal A, Chen M, Foszcz E, Schultz JD, Kearns NM, Young RM, Zanni MT, Wasielewski MR. Two-Dimensional Electronic Spectroscopy Reveals Excitation Energy-Dependent State Mixing during Singlet Fission in a Terrylenediimide Dimer. Journal of the American Chemical Society. PMID 30501193 DOI: 10.1021/jacs.8b08627  0.48
2018 Buchanan LE, Maj M, Dunkelberger EB, Cheng PN, Nowick JS, Zanni MT. Structural polymorphs suggest competing pathways for the formation of amyloid fibrils that diverge from a common intermediate species. Biochemistry. PMID 30375231 DOI: 10.1021/acs.biochem.8b00997  1
2018 Saraswat V, Jacobberger RM, Ostrander JS, Hummell CL, Way AJ, Wang J, Zanni MT, Arnold MS. Invariance of Water Permeance Through Size-Differentiated Graphene Oxide Laminates. Acs Nano. PMID 29995380 DOI: 10.1021/acsnano.8b02015  0.96
2018 Maj M, Lomont JP, Rich KL, Alperstein AM, Zanni MT. Site-specific detection of protein secondary structure using 2D IR dihedral indexing: a proposed assembly mechanism of oligomeric hIAPP. Chemical Science. 9: 463-474. PMID 29619202 DOI: 10.1039/c7sc03789a  0.96
2018 Ho JJ, Ghosh A, Zhang TO, Zanni MT. Heterogeneous Amyloid β-Sheet Polymorphs Identified on Hydrogen Bond Promoting Surfaces Using 2D SFG Spectroscopy. The Journal of Physical Chemistry. A. PMID 29369624 DOI: 10.1021/acs.jpca.7b11934  1
2018 Petti M, Lomont JP, Maj M, Zanni MT. 2D Spectroscopy is Being Used to Address Core Scientific Questions in Biology and Materials Science. The Journal of Physical Chemistry. B. PMID 29346730 DOI: 10.1021/acs.jpcb.7b11370  0.96
2017 Lomont JP, Rich KL, Maj M, Ho JJ, Ostrander JS, Zanni MT. A Spectroscopic Signature for Stable β-Amyloid Fibrils Versus β-Sheet Rich Oligomers. The Journal of Physical Chemistry. B. PMID 29220175 DOI: 10.1021/acs.jpcb.7b10765  1
2017 Serrano AL, Lomont JP, Tu LH, Raleigh DP, Zanni MT. A Free Energy Barrier Caused by the Refolding of an Oligomeric Intermediate Controls the Lag Time of Amyloid Formation by hIAPP. Journal of the American Chemical Society. PMID 29072444 DOI: 10.1021/jacs.7b08830  0.96
2017 Lomont JP, Ostrander JS, Ho JJ, Petti MK, Zanni MT. Not All β-Sheets Are the Same: Amyloid Infrared Spectra, Transition Dipole Strengths, and Couplings Investigated by 2D IR Spectroscopy. The Journal of Physical Chemistry. B. PMID 28851219 DOI: 10.1021/acs.jpcb.7b06826  1
2017 Kratochvil HT, Maj M, Matulef K, Annen AW, Ostmeyer J, Perozo E, Roux B, Valiyaveetil FI, Zanni MT. Probing the effects of gating on the ion occupancy of the K(+) channel selectivity filter using 2D IR spectroscopy. Journal of the American Chemical Society. PMID 28472884 DOI: 10.1021/jacs.7b01594  0.64
2017 Zhang TO, Alperstein AM, Zanni MT. Amyloid β-Sheet Secondary Structure Identified in UV-Induced Cataracts of Porcine Lenses using 2D IR Spectroscopy. Journal of Molecular Biology. PMID 28454743 DOI: 10.1016/j.jmb.2017.04.014  0.88
2017 Kearns NM, Mehlenbacher RD, Jones AC, Zanni MT. Broadband 2D electronic spectrometer using white light and pulse shaping: noise and signal evaluation at 1 and 100 kHz. Optics Express. 25: 7869-7883. PMID 28380905  0.52
2017 Schneider SH, Kratochvil HT, Zanni MT, Boxer SG. Solvent Independent Anharmonicity for Carbonyl Oscillators. The Journal of Physical Chemistry. B. PMID 28225620 DOI: 10.1021/acs.jpcb.7b00537  0.52
2017 McDonough TJ, Zhang L, Roy SS, Kearns NM, Arnold MS, Zanni MT, Andrew TL. Triplet exciton dissociation and electron extraction in graphene-templated pentacene observed with ultrafast spectroscopy. Physical Chemistry Chemical Physics : Pccp. PMID 28133648 DOI: 10.1039/c6cp06454j  0.56
2017 Ostrander JS, Knepper R, Tappan AS, Kay JJ, Zanni MT, Farrow DA. Energy Transfer Between Coherently Delocalized States in Thin Films of the Explosive Pentaerythritol Tetranitrate (PETN) Revealed by Two-Dimensional Infrared Spectroscopy. The Journal of Physical Chemistry. B. PMID 28099029 DOI: 10.1021/acs.jpcb.6b09879  0.96
2017 Yano Y, Kondo K, Watanabe Y, Zhang TO, Ho JJ, Oishi S, Fujii N, Zanni MT, Matsuzaki K. GXXXG-Mediated Parallel and Antiparallel Dimerization of Transmembrane Helices and Its Inhibition by Cholesterol: Single-Pair FRET and 2D IR Studies. Angewandte Chemie (International Ed. in English). PMID 28071848 DOI: 10.1002/anie.201609708  1
2017 Ghosh A, Ostrander JS, Zanni MT. Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy. Chemical Reviews. PMID 28060489 DOI: 10.1021/acs.chemrev.6b00582  1
2016 Kratochvil HT, Carr JK, Matulef K, Annen AW, Li H, Maj M, Ostmeyer J, Serrano AL, Raghuraman H, Moran SD, Skinner JL, Perozo E, Roux B, Valiyaveetil FI, Zanni MT. Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy. Science (New York, N.Y.). 353: 1040-1044. PMID 27701114 DOI: 10.1126/science.aag1447  1
2016 Ostrander JS, Serrano AL, Ghosh A, Zanni MT. Spatially Resolved Two-Dimensional Infrared Spectroscopy via Wide-Field Microscopy. Acs Photonics. 3: 1315-1323. PMID 27517058 DOI: 10.1021/acsphotonics.6b00297  1
2016 Abedini A, Plesner A, Cao P, Ridgway Z, Zhang J, Tu LH, Middleton CT, Chao B, Sartori D, Meng F, Wang H, Wong AG, Zanni MT, Verchere CB, Raleigh DP, et al. Time-resolved studies define the nature of toxic IAPP intermediates, providing insight for anti-amyloidosis therapeutics. Elife. 5. PMID 27213520 DOI: 10.7554/eLife.12977  0.92
2016 Mehlenbacher RD, Wang J, Kearns NM, Shea MJ, Flach JT, McDonough TJ, Wu MY, Arnold MS, Zanni M. Ultrafast Exciton Hopping Observed in Bare Semiconducting Carbon Nanotube Thin Films With 2DWL Spectroscopy. The Journal of Physical Chemistry Letters. PMID 27182690 DOI: 10.1021/acs.jpclett.6b00650  1
2016 Ghosh A, Serrano AL, Oudenhoven TA, Ostrander JS, Eklund EC, Blair AF, Zanni MT. Experimental implementations of 2D IR spectroscopy through a horizontal pulse shaper design and a focal plane array detector. Optics Letters. 41: 524-7. PMID 26907414 DOI: 10.1364/OL.41.000524  1
2016 Roy S, Skoff D, Perroni DV, Mondal J, Yethiraj A, Mahanthappa M, Zanni M, Skinner JL. Water Dynamics in Gyroid Phases of Self-Assembled Gemini Surfactants. Journal of the American Chemical Society. PMID 26875689 DOI: 10.1021/jacs.5b12370  1
2016 Zhang TO, Grechko M, Moran SD, Zanni MT. Isotope-Labeled Amyloids via Synthesis, Expression, and Chemical Ligation for Use in FTIR, 2D IR, and NMR Studies. Methods in Molecular Biology (Clifton, N.J.). 1345: 21-41. PMID 26453203 DOI: 10.1007/978-1-4939-2978-8_2  1
2015 Dunkelberger EB, Grechko M, Zanni MT. Transition Dipoles from 1D and 2D Infrared Spectroscopy Help Reveal the Secondary Structures of Proteins: Application to Amyloids. The Journal of Physical Chemistry. B. 119: 14065-75. PMID 26446575 DOI: 10.1021/acs.jpcb.5b07706  1
2015 Kratochvil HT, Ha DG, Zanni MT. Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores. The Journal of Chemical Physics. 143: 104201. PMID 26374025 DOI: 10.1063/1.4929991  1
2015 Ding B, Panahi A, Ho JJ, Laaser JE, Brooks CL, Zanni MT, Chen Z. Probing Site-Specific Structural Information of Peptides at Model Membrane Interface In Situ. Journal of the American Chemical Society. 137: 10190-8. PMID 26241117 DOI: 10.1021/jacs.5b04024  1
2015 Ho JJ, Skoff DR, Ghosh A, Zanni MT. Structural Characterization of Single-Stranded DNA Monolayers Using Two-Dimensional Sum Frequency Generation Spectroscopy. The Journal of Physical Chemistry. B. 119: 10586-96. PMID 26222775 DOI: 10.1021/acs.jpcb.5b07078  1
2015 Serrano AL, Ghosh A, Ostrander JS, Zanni MT. Wide-field FTIR microscopy using mid-IR pulse shaping. Optics Express. 23: 17815-27. PMID 26191843 DOI: 10.1364/OE.23.017815  1
2015 Oudenhoven TA, Joo Y, Laaser JE, Gopalan P, Zanni MT. Dye aggregation identified by vibrational coupling using 2D IR spectroscopy. The Journal of Chemical Physics. 142: 212449. PMID 26049469 DOI: 10.1063/1.4921649  1
2015 Mehlenbacher RD, McDonough TJ, Grechko M, Wu MY, Arnold MS, Zanni MT. Energy transfer pathways in semiconducting carbon nanotubes revealed using two-dimensional white-light spectroscopy. Nature Communications. 6: 6732. PMID 25865487 DOI: 10.1038/ncomms7732  1
2015 Zanni M, E D J, Aravamudhan S, Pallipurath A, Arunan E, Schnedermann C, Mishra AK, Warren M, Hirst JD, John F, Pal R, Helliwell JR, Moirangthem K, Chakraborty S, Dijkstra AG, et al. Time and Space resolved Methods: general discussion. Faraday Discussions. 177: 263-92. PMID 25849318 DOI: 10.1039/c5fd90017d  1
2015 Dhoke K, Zanni M, Harbola U, Venkatraman RK, Arunan E, Lin KC, Nenov A, Skelton J, Miller RJ, Hirst JD, Aquilanti V, Helliwell JR, Keshavamurthy S, Ramesh S, Ashfold M, et al. Dynamics of chemical bond: general discussion. Faraday Discussions. 177: 121-54. PMID 25837323 DOI: 10.1039/C5FD90016F  1
2015 Jemmis ED, Aravamudhan S, Arunan E, Shahi A, Hunt N, Schnedermann C, Helliwell JR, Ashfold M, Prabal Goswami H, Nenov A, Deckert V, Roy Chowdhury P, Ghiggino K, Miller RJ, Goswami D, ... ... Zanni M, et al. Future challenges: general discussion. Faraday Discussions. 177: 517-45. PMID 25831150 DOI: 10.1039/C5FD90019K  1
2015 Zanni M, Jemmis ED, Aravamudhan S, Arunan E, Hunt N, Mukhopadhyay S, Shepherd HJ, Keshavamurthy S, Dijkstra AG, Ashfold M, Prabal Goswami H, Nenov A, Medhi H, Ghiggino K, Moirangthem K, et al. Local and Global Dynamics: general discussion. Faraday Discussions. 177: 381-403. PMID 25820607 DOI: 10.1039/C5FD90018B  1
2015 Chan GK, Witkowski A, Gantz DL, Zhang TO, Zanni MT, Jayaraman S, Cavigiolio G. Myeloperoxidase-mediated Methionine Oxidation Promotes an Amyloidogenic Outcome for Apolipoprotein A-I. The Journal of Biological Chemistry. 290: 10958-71. PMID 25759391 DOI: 10.1074/jbc.M114.630442  1
2015 Ghosh A, Ho JJ, Serrano AL, Skoff DR, Zhang T, Zanni MT. Two-dimensional sum-frequency generation (2D SFG) spectroscopy: summary of principles and its application to amyloid fiber monolayers. Faraday Discussions. 177: 493-505. PMID 25611039 DOI: 10.1039/c4fd00173g  1
2015 Ding B, Panahi A, Ho JJ, Laaser JE, Brooks CL, Zanni MT, Chen Z. Probing site-specific structural information of peptides at model membrane interface in situ Journal of the American Chemical Society. 137: 10190-10198. DOI: 10.1021/jacs.5b04024  1
2014 Shea MJ, Mehlenbacher RD, Zanni MT, Arnold MS. Experimental Measurement of the Binding Configuration and Coverage of Chirality-Sorting Polyfluorenes on Carbon Nanotubes. The Journal of Physical Chemistry Letters. 5: 3742-9. PMID 26278744 DOI: 10.1021/jz5017813  0.56
2014 Ghosh A, Wang J, Moroz YS, Korendovych IV, Zanni M, DeGrado WF, Gai F, Hochstrasser RM. 2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel. The Journal of Chemical Physics. 140: 235105. PMID 24952572 DOI: 10.1063/1.4881188  1
2014 Moran SD, Zanni MT. How to Get Insight into Amyloid Structure and Formation from Infrared Spectroscopy. The Journal of Physical Chemistry Letters. 5: 1984-1993. PMID 24932380 DOI: 10.1021/jz500794d  1
2014 Grechko M, Ye Y, Mehlenbacher RD, McDonough TJ, Wu MY, Jacobberger RM, Arnold MS, Zanni MT. Diffusion-assisted photoexcitation transfer in coupled semiconducting carbon nanotube thin films. Acs Nano. 8: 5383-94. PMID 24806792 DOI: 10.1021/nn4041798  1
2014 Peran I, Oudenhoven T, Woys AM, Watson MD, Zhang TO, Carrico I, Zanni MT, Raleigh DP. General strategy for the bioorthogonal incorporation of strongly absorbing, solvation-sensitive infrared probes into proteins. The Journal of Physical Chemistry. B. 118: 7946-53. PMID 24749542 DOI: 10.1021/jp5008279  1
2014 Tu LH, Serrano AL, Zanni MT, Raleigh DP. Mutational analysis of preamyloid intermediates: the role of his-tyr interactions in islet amyloid formation. Biophysical Journal. 106: 1520-7. PMID 24703313 DOI: 10.1016/j.bpj.2013.12.052  1
2014 Buchanan LE, Carr JK, Fluitt AM, Hoganson AJ, Moran SD, de Pablo JJ, Skinner JL, Zanni MT. Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 111: 5796-801. PMID 24550484 DOI: 10.1073/pnas.1401587111  1
2014 Moran SD, Zhang TO, Zanni MT. An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin. Protein Science : a Publication of the Protein Society. 23: 321-31. PMID 24415662 DOI: 10.1002/pro.2422  1
2014 Laaser JE, Skoff DR, Ho JJ, Joo Y, Serrano AL, Steinkruger JD, Gopalan P, Gellman SH, Zanni MT. Two-dimensional sum-frequency generation reveals structure and dynamics of a surface-bound peptide. Journal of the American Chemical Society. 136: 956-62. PMID 24372101 DOI: 10.1021/ja408682s  1
2014 Zanni MT. Exciton hopping in carbon nanotube solar cells studied with 2D white-light spectroscopy Proceedings of Spie - the International Society For Optical Engineering. 9165. DOI: 10.1117/12.2063327  1
2014 Shea MJ, Mehlenbacher RD, Zanni MT, Arnold MS. Experimental measurement of the binding configuration and coverage of chirality-sorting polyfluorenes on carbon nanotubes Journal of Physical Chemistry Letters. 5: 3742-3749. DOI: 10.1021/jz5017813  1
2014 Laaser JE, Christianson JR, Oudenhoven TA, Joo Y, Gopalan P, Schmidt JR, Zanni MT. Dye self-association identified by intermolecular couplings between vibrational modes as revealed by infrared spectroscopy, and implications for electron injection Journal of Physical Chemistry C. 118: 5854-5861. DOI: 10.1021/jp412402v  1
2013 Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT. Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics. 422: 8-15. PMID 24659850 DOI: 10.1016/j.chemphys.2012.08.019  1
2013 Ding B, Laaser JE, Liu Y, Wang P, Zanni MT, Chen Z. Site-specific orientation of an α-helical peptide ovispirin-1 from isotope-labeled SFG spectroscopy. The Journal of Physical Chemistry. B. 117: 14625-34. PMID 24228619 DOI: 10.1021/jp408064b  1
2013 Buchanan LE, Dunkelberger EB, Tran HQ, Cheng PN, Chiu CC, Cao P, Raleigh DP, de Pablo JJ, Nowick JS, Zanni MT. Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient β-sheet. Proceedings of the National Academy of Sciences of the United States of America. 110: 19285-90. PMID 24218609 DOI: 10.1073/pnas.1314481110  1
2013 Mukherjee SS, Skoff DR, Middleton CT, Zanni MT. Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. The Journal of Chemical Physics. 139: 144205. PMID 24116612 DOI: 10.1063/1.4824638  1
2013 Lam AR, Moran SD, Preketes NK, Zhang TO, Zanni MT, Mukamel S. Study of the γD-crystallin protein using two-dimensional infrared (2DIR) spectroscopy: experiment and simulation. The Journal of Physical Chemistry. B. 117: 15436-43. PMID 23972032 DOI: 10.1021/jp405159v  1
2013 Moran SD, Zhang TO, Decatur SM, Zanni MT. Amyloid fiber formation in human γD-Crystallin induced by UV-B photodamage. Biochemistry. 52: 6169-81. PMID 23957864 DOI: 10.1021/bi4008353  1
2013 Carr JK, Buchanan LE, Schmidt JR, Zanni MT, Skinner JL. Structure and dynamics of urea/water mixtures investigated by vibrational spectroscopy and molecular dynamics simulation. The Journal of Physical Chemistry. B. 117: 13291-300. PMID 23841646 DOI: 10.1021/jp4037217  1
2013 Dunkelberger EB, Woys AM, Zanni MT. 2D IR cross peaks reveal hydrogen-deuterium exchange with single residue specificity. The Journal of Physical Chemistry. B. 117: 15297-305. PMID 23659731 DOI: 10.1021/jp402942s  1
2013 Woys AM, Mukherjee SS, Skoff DR, Moran SD, Zanni MT. A strongly absorbing class of non-natural labels for probing protein electrostatics and solvation with FTIR and 2D IR spectroscopies. The Journal of Physical Chemistry. B. 117: 5009-18. PMID 23537223 DOI: 10.1021/jp402946c  1
2013 Mehlenbacher RD, Wu MY, Grechko M, Laaser JE, Arnold MS, Zanni MT. Photoexcitation dynamics of coupled semiconducting carbon nanotube thin films. Nano Letters. 13: 1495-501. PMID 23464618 DOI: 10.1021/nl304591w  1
2013 Laaser JE, Zanni MT. Extracting structural information from the polarization dependence of one- and two-dimensional sum frequency generation spectra. The Journal of Physical Chemistry. A. 117: 5875-90. PMID 23140356 DOI: 10.1021/jp307721y  1
2012 Grechko M, Zanni MT. Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: application to α-helices. The Journal of Chemical Physics. 137: 184202. PMID 23163364 DOI: 10.1063/1.4764861  1
2012 Woys AM, Almeida AM, Wang L, Chiu CC, McGovern M, de Pablo JJ, Skinner JL, Gellman SH, Zanni MT. Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra. Journal of the American Chemical Society. 134: 19118-28. PMID 23113791 DOI: 10.1021/ja3074962  1
2012 Moran SD, Decatur SM, Zanni MT. Structural and sequence analysis of the human γD-crystallin amyloid fibril core using 2D IR spectroscopy, segmental 13C labeling, and mass spectrometry. Journal of the American Chemical Society. 134: 18410-6. PMID 23082813 DOI: 10.1021/ja307898g  1
2012 Dunkelberger EB, Buchanan LE, Marek P, Cao P, Raleigh DP, Zanni MT. Deamidation accelerates amyloid formation and alters amylin fiber structure. Journal of the American Chemical Society. 134: 12658-67. PMID 22734583 DOI: 10.1021/ja3039486  1
2012 Manor J, Feldblum ES, Zanni MT, Arkin IT. Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. The Journal of Physical Chemistry Letters. 3: 939-944. PMID 22563521 DOI: 10.1021/jz300150v  1
2012 Middleton CT, Marek P, Cao P, Chiu CC, Singh S, Woys AM, de Pablo JJ, Raleigh DP, Zanni MT. Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 4: 355-60. PMID 22522254 DOI: 10.1038/nchem.1293  1
2012 Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT. Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human γD-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 109: 3329-34. PMID 22328156 DOI: 10.1073/pnas.1117704109  1
2011 Xiong W, Laaser JE, Mehlenbacher RD, Zanni MT. Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 108: 20902-7. PMID 22143772 DOI: 10.1073/pnas.1115055108  1
2011 Middleton CT, Buchanan LE, Dunkelberger EB, Zanni MT. Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. The Journal of Physical Chemistry Letters. 2: 2357-2361. PMID 21966585 DOI: 10.1021/jz201024m  1
2011 Wang L, Middleton CT, Singh S, Reddy AS, Woys AM, Strasfeld DB, Marek P, Raleigh DP, de Pablo JJ, Zanni MT, Skinner JL. 2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure. Journal of the American Chemical Society. 133: 16062-71. PMID 21916515 DOI: 10.1021/ja204035k  1
2011 Wang L, Middleton CT, Zanni MT, Skinner JL. Development and validation of transferable amide I vibrational frequency maps for peptides. The Journal of Physical Chemistry. B. 115: 3713-24. PMID 21405034 DOI: 10.1021/jp200745r  1
2011 Laaser JE, Xiong W, Zanni MT. Time-domain SFG spectroscopy using mid-IR pulse shaping: practical and intrinsic advantages. The Journal of Physical Chemistry. B. 115: 2536-46. PMID 21366211 DOI: 10.1021/jp200757x  1
2011 Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, Zanni MT. Nonlinear spectroscopy on charge transfer interfaces Proceedings of Spie - the International Society For Optical Engineering. 8098. DOI: 10.1117/12.897551  1
2011 Hamm P, Zanni M. Concepts and methods of 2D infrared spectroscopy Concepts and Methods of 2d Infrared Spectroscopy. 1-286. DOI: 10.1017/CBO9780511675935  1
2010 Marek P, Woys AM, Sutton K, Zanni MT, Raleigh DP. Efficient microwave-assisted synthesis of human islet amyloid polypeptide designed to facilitate the specific incorporation of labeled amino acids. Organic Letters. 12: 4848-51. PMID 20931985 DOI: 10.1021/ol101981b  1
2010 Reddy AS, Wang L, Singh S, Ling YL, Buchanan L, Zanni MT, Skinner JL, de Pablo JJ. Stable and metastable states of human amylin in solution. Biophysical Journal. 99: 2208-16. PMID 20923655 DOI: 10.1016/j.bpj.2010.07.014  1
2010 Marek P, Mukherjee S, Zanni MT, Raleigh DP. Residue-specific, real-time characterization of lag-phase species and fibril growth during amyloid formation: a combined fluorescence and IR study of p-cyanophenylalanine analogs of islet amyloid polypeptide. Journal of Molecular Biology. 400: 878-88. PMID 20630475 DOI: 10.1016/j.jmb.2010.05.041  1
2010 Middleton CT, Woys AM, Mukherjee SS, Zanni MT. Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy. Methods (San Diego, Calif.). 52: 12-22. PMID 20472067 DOI: 10.1016/j.ymeth.2010.05.002  1
2010 Meng F, Abedini A, Plesner A, Middleton CT, Potter KJ, Zanni MT, Verchere CB, Raleigh DP. The sulfated triphenyl methane derivative acid fuchsin is a potent inhibitor of amyloid formation by human islet amyloid polypeptide and protects against the toxic effects of amyloid formation. Journal of Molecular Biology. 400: 555-66. PMID 20452363 DOI: 10.1016/j.jmb.2010.05.001  1
2010 Reddy AS, Wang L, Lin YS, Ling Y, Chopra M, Zanni MT, Skinner JL, De Pablo JJ. Solution structures of rat amylin peptide: simulation, theory, and experiment. Biophysical Journal. 98: 443-51. PMID 20141758 DOI: 10.1016/j.bpj.2009.10.029  1
2010 Woys AM, Lin YS, Reddy AS, Xiong W, de Pablo JJ, Skinner JL, Zanni MT. 2D IR line shapes probe ovispirin peptide conformation and depth in lipid bilayers. Journal of the American Chemical Society. 132: 2832-8. PMID 20136132 DOI: 10.1021/ja9101776  1
2010 Paoprasert P, Laaser JE, Xiong W, Franking RA, Hamers RJ, Zanni MT, Schmidt JR, Gopalan P. Bridge-dependent interfacial electron transfer from rhenium-bipyridine complexes to TiO2 nanocrystalline thin films Journal of Physical Chemistry C. 114: 9898-9907. DOI: 10.1021/jp102022d  1
2010 Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, Zanni MT. Transient 2D IR spectroscopy of charge injection at organic-inorganic interfaces Optics Infobase Conference Papers 1
2010 Middleton CT, Woys AM, Lin YS, Reddy AS, Xiong W, de Pablo JJ, Skinner JL, Zanni MT. Protein structure determination in complex environments using 2D IR spectroscopy Optics Infobase Conference Papers 1
2010 Middleton CT, Zanni MT. Advances in ultrafast 2D spectroscopy Optics Infobase Conference Papers 1
2009 Strasfeld DB, Middleton CT, Zanni MT. Mode selectivity with polarization shaping in the mid-IR. New Journal of Physics. 11: 105046. PMID 20463848 DOI: 10.1088/1367-2630/11/10/105046  1
2009 Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, Zanni MT. Transient 2D IR spectroscopy of charge injection in dye-sensitized nanocrystalline thin films. Journal of the American Chemical Society. 131: 18040-1. PMID 19947603 DOI: 10.1021/ja908479r  1
2009 Strasfeld DB, Ling YL, Gupta R, Raleigh DP, Zanni MT. Strategies for extracting structural information from 2D IR spectroscopy of amyloid: application to islet amyloid polypeptide. The Journal of Physical Chemistry. B. 113: 15679-91. PMID 19883093 DOI: 10.1021/jp9072203  1
2009 Middleton CT, Strasfeld DB, Zanni MT. Polarization shaping in the mid-IR and polarization-based balanced heterodyne detection with application to 2D IR spectroscopy. Optics Express. 17: 14526-33. PMID 19687931 DOI: 10.1364/OE.17.014526  1
2009 Shim SH, Gupta R, Ling YL, Strasfeld DB, Raleigh DP, Zanni MT. Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 6614-9. PMID 19346479 DOI: 10.1073/pnas.0805957106  1
2009 Shim SH, Zanni MT. How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping. Physical Chemistry Chemical Physics : Pccp. 11: 748-61. PMID 19290321 DOI: 10.1039/b813817f  1
2009 Manor J, Mukherjee P, Lin YS, Leonov H, Skinner JL, Zanni MT, Arkin IT. Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies. Structure (London, England : 1993). 17: 247-54. PMID 19217395 DOI: 10.1016/j.str.2008.12.015  1
2009 Ling YL, Strasfeld DB, Shim SH, Raleigh DP, Zanni MT. Two-dimensional infrared spectroscopy provides evidence of an intermediate in the membrane-catalyzed assembly of diabetic amyloid. The Journal of Physical Chemistry. B. 113: 2498-505. PMID 19182939 DOI: 10.1021/jp810261x  1
2009 Lin YS, Shorb JM, Mukherjee P, Zanni MT, Skinner JL. Empirical amide I vibrational frequency map: application to 2D-IR line shapes for isotope-edited membrane peptide bundles. The Journal of Physical Chemistry. B. 113: 592-602. PMID 19053670 DOI: 10.1021/jp807528q  1
2009 Xiong W, Strasfeld DB, Shim SH, Zanni MT. Automated 2D IR spectrometer mitigates the influence of high optical densities Vibrational Spectroscopy. 50: 136-142. DOI: 10.1016/j.vibspec.2008.10.010  1
2009 Strasfeld DB, Shim SH, Zanni MT. New advances in mid-IR pulse shaping and its application of 2D IR spectroscopy and ground-state coherent control Advances in Chemical Physics. 141: 1-28.  1
2008 Xiong W, Zanni MT. Signal enhancement and background cancellation in collinear two-dimensional spectroscopies. Optics Letters. 33: 1371-3. PMID 18552963 DOI: 10.1364/OL.33.001371  1
2008 Strasfeld DB, Ling YL, Shim SH, Zanni MT. Tracking fiber formation in human islet amyloid polypeptide with automated 2D-IR spectroscopy. Journal of the American Chemical Society. 130: 6698-9. PMID 18459774 DOI: 10.1021/ja801483n  1
2008 Krummel AT, Zanni MT. Evidence for coupling between nitrile groups using DNA templates: a promising new method for monitoring structures with infrared spectroscopy. The Journal of Physical Chemistry. B. 112: 1336-8. PMID 18197662 DOI: 10.1021/jp711558a  1
2008 Shim SH, Strasfeld DB, Ling YL, Zanni MT. Mid-IR pulse shaping for enhanced 2D IR spectroscopy 2008 Conference On Quantum Electronics and Laser Science Conference On Lasers and Electro-Optics, Cleo/Qels. DOI: 10.1109/CLEO.2008.4552404  1
2007 Grumstrup EM, Shim SH, Montgomery MA, Damrauer NH, Zanni MT. Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping Technology. Optics Express. 15: 16681-9. PMID 19550954  1
2007 Strasfeld DB, Shim SH, Zanni MT. Controlling vibrational excitation with shaped mid-IR pulses. Physical Review Letters. 99: 038102. PMID 17678332 DOI: 10.1103/PhysRevLett.99.038102  1
2007 Shim SH, Strasfeld DB, Ling YL, Zanni MT. Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide. Proceedings of the National Academy of Sciences of the United States of America. 104: 14197-202. PMID 17502604 DOI: 10.1073/pnas.0700804104  1
2007 Ding F, Zanni MT. Heterodyned 3D IR spectroscopy Chemical Physics. 341: 95-105. DOI: 10.1016/j.chemphys.2007.06.010  1
2007 Strasfeld DB, Shim SH, Zanni MT. Acousto-optic shaping of femtosecond pulses directly in the mid-IR Springer Series in Chemical Physics. 88: 151-153. DOI: 10.1007/978-3-540-68781-8-48  1
2007 Ding F, Fulmer EC, Mukherjee P, Zanni MT. Femtosecond 3D IR spectroscopy Springer Series in Chemical Physics. 88: 404-406. DOI: 10.1007/978-3-540-68781-8-131  1
2007 Shim SH, Strasfeld DB, Ling YL, Zanni MT. Automated 2D IR spectroscopy using mid-IR pulse shaping and applications to membrane peptides Optics Infobase Conference Papers 1
2006 Shim SH, Strasfeld DB, Zanni MT. Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses. Optics Express. 14: 13120-30. PMID 19532209 DOI: 10.1364/OE.14.013120  1
2006 Mukherjee P, Kass I, Arkin IT, Zanni MT. Structural disorder of the CD3zeta transmembrane domain studied with 2D IR spectroscopy and molecular dynamics simulations. The Journal of Physical Chemistry. B. 110: 24740-9. PMID 17134238 DOI: 10.1021/jp0640530  1
2006 Krummel AT, Zanni MT. Interpreting DNA vibrational circular dichroism spectra using a coupling model from two-dimensional infrared spectroscopy. The Journal of Physical Chemistry. B. 110: 24720-7. PMID 17134235 DOI: 10.1021/jp063227a  1
2006 Ding F, Mukherjee P, Zanni MT. Passively correcting phase drift in two-dimensional infrared spectroscopy. Optics Letters. 31: 2918-20. PMID 16969422 DOI: 10.1364/OL.31.002918  1
2006 Krummel AT, Zanni MT. DNA vibrational coupling revealed with two-dimensional infrared spectroscopy: insight into why vibrational spectroscopy is sensitive to DNA structure. The Journal of Physical Chemistry. B. 110: 13991-4000. PMID 16836352 DOI: 10.1021/jp062597w  1
2006 Shim SH, Strasfeld DB, Fulmer EC, Zanni MT. Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation. Optics Letters. 31: 838-40. PMID 16544641 DOI: 10.1364/OL.31.000838  1
2006 Mukherjee P, Kass I, Arkin IT, Arkin I, Zanni MT. Picosecond dynamics of a membrane protein revealed by 2D IR. Proceedings of the National Academy of Sciences of the United States of America. 103: 3528-33. PMID 16505377 DOI: 10.1073/pnas.0508833103  1
2005 Ding F, Fulmer EC, Zanni MT. Heterodyned fifth-order two-dimensional IR spectroscopy: third-quantum states and polarization selectivity. The Journal of Chemical Physics. 123: 94502. PMID 16164348 DOI: 10.1063/1.1998829  1
2005 Fulmer EC, Ding F, Mukherjee P, Zanni MT. Vibrational dynamics of ions in glass from fifth-order two-dimensional infrared spectroscopy. Physical Review Letters. 94: 067402. PMID 15783774 DOI: 10.1103/PhysRevLett.94.067402  1
2005 Fulmer EC, Ding F, Zanni MT. Heterodyned fifth-order 2D-IR spectroscopy of the azide ion in an ionic glass. The Journal of Chemical Physics. 122: 34302. PMID 15740196 DOI: 10.1063/1.1810513  1
2004 Mukherjee P, Krummel AT, Fulmer EC, Kass I, Arkin IT, Zanni MT. Site-specific vibrational dynamics of the CD3zeta membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy. The Journal of Chemical Physics. 120: 10215-24. PMID 15268045 DOI: 10.1063/1.1718332  1
2004 Fulmer EC, Mukherjee P, Krummel AT, Zanni MT. A pulse sequence for directly measuring the anharmonicities of coupled vibrations: Two-quantum two-dimensional infrared spectroscopy. The Journal of Chemical Physics. 120: 8067-78. PMID 15267726 DOI: 10.1063/1.1649725  1
2003 Krummel AT, Mukherjee P, Zanni MT. Inter and intrastrand vibrational coupling in DNA studied with heterodyned 2D-IR spectroscopy Journal of Physical Chemistry B. 107: 9165-9169.  1
2003 Ge NH, Zanni MT, Hochstrasser RM. Local structure and dynamics of liquid acetone by heterodyned 2D IR spectroscopy Springer Series in Chemical Physics. 71: 592-594.  1
2003 Hochstrasser RM, Chang J, Chen JX, Ge NH, Kim YS, Park J, Rubtsov I, Zanni MT. Dynamics of peptide structures by multiple pulse 2D IR spectroscopy Springer Series in Chemical Physics. 71: 597-601.  1
2002 Hochstrasser RM, Ge NH, Gnanakaran S, Zanni MT. Two dimensional infrared spectroscopy: Studies of the dynamics of structures with femtosecond pulse fourier transform correlation spectroscopy Bulletin of the Chemical Society of Japan. 75: 1103-1110. DOI: 10.1246/bcsj.75.1103  1
2002 Ge NH, Zanni MT, Hochstrasser RM. Effects of vibrational frequency correlations on two-dimensional infrared spectra Journal of Physical Chemistry A. 106: 962-972. DOI: 10.1021/jp011768o  1
2002 Davis AV, Zanni MT, Weinkauf R, Neumark DM. Comment on 'Iodine effect on the relaxation pathway of photoexcited I-(H2O)n clusters' [Chem. Phys. Lett. 335 (2001) 475] Chemical Physics Letters. 353: 455-458. DOI: 10.1016/S0009-2614(01)01365-3  1
2001 Zanni MT, Hochstrasser RM. Two-dimensional infrared spectroscopy: a promising new method for the time resolution of structures. Current Opinion in Structural Biology. 11: 516-22. PMID 11785750 DOI: 10.1016/S0959-440X(00)00243-8  1
2001 Zanni MT, Ge NH, Kim YS, Hochstrasser RM. Two-dimensional IR spectroscopy can be designed to eliminate the diagonal peaks and expose only the crosspeaks needed for structure determination. Proceedings of the National Academy of Sciences of the United States of America. 98: 11265-70. PMID 11562493 DOI: 10.1073/pnas.201412998  1
2001 Zanni MT, Asplund MC, Hochstrasser RM. Two-dimensional heterodyned and stimulated infrared photon echoes of N-methylacetamide-D Journal of Chemical Physics. 114: 4579-4590. DOI: 10.1063/1.1346647  1
2001 Zanni MT, Gnanakaran S, Stenger J, Hochstrasser RM. Heterodyned two-dimensional infrared spectroscopy of solvent-dependent conformations of acetylproline-NH2 Journal of Physical Chemistry B. 105: 6520-6535. DOI: 10.1021/jp0100093  1
2001 Zanni MT, Asplund MC, Decatur SM, Hochstrasser RM. Frequency resolved and heterodyned femtosecond infrared echoes of peptides; multiple pulse coherent vibrational analogues of NMR Springer Series in Chemical Physics. 66: 504-506.  1
2000 Frischkorn C, Zanni MT, Davis AV, Neumark DM. Electron solvation dynamics in I-(NH3)n clusters Faraday Discussions. 49-62; discussion 79. PMID 11040500  1
2000 Asplund MC, Zanni MT, Hochstrasser RM. Two-dimensional infrared spectroscopy of peptides by phase-controlled femtosecond vibrational photon echoes. Proceedings of the National Academy of Sciences of the United States of America. 97: 8219-24. PMID 10890905 DOI: 10.1073/pnas.140227997  1
2000 Davis AV, Zanni MT, Frischkorn C, Elhanine M, Neumark DM. Femtosecond stimulated emission pumping: Dynamics of vibrational energy loss in excited I2 -(CO2)4 clusters Journal of Electron Spectroscopy and Related Phenomena. 112: 221-230. DOI: 10.1016/S0368-2048(00)00215-2  1
2000 Davis AV, Zanni MT, Frischkorn C, Neumark DM. Time-resolved dynamics of charge transfer to solvent states in solvated iodide clusters Journal of Electron Spectroscopy and Related Phenomena. 108: 203-211. DOI: 10.1016/S0368-2048(00)00129-8  1
2000 Zanni MT, Frischkorn C, Davis AV, Neumark DM. Dynamics of the Charge-transfer-to-solvent States in I- (Xe)n Clusters Journal of Physical Chemistry A. 104: X1-2530.  1
2000 Zanni MT, Davis AV, Frischkorn C, Elhanine M, Neumark DM. Femtosecond stimulated emission pumping: Characterization of the I- 2 ground state Journal of Chemical Physics. 112: 8847-8854.  1
2000 Greenblatt BJ, Zanni MT, Neumark DM. Femtosecond photoelectron spectroscopy of I- 2 (CO2)n clusters (n=4, 6, 9, 12, 14, 16) Journal of Chemical Physics. 112: 601-612.  1
1999 Lehr L, Zanni MT, Frischkorn C, Weinkauf R, Neumark DM. Electron solvation in finite systems: femtosecond dynamics of iodide. (Water)n anion clusters Science (New York, N.Y.). 284: 635-8. PMID 10213684  1
1999 Lehr L, Zanni MT, Frischkorn C, Weinkauf R, Neumark DM. Electron solvation in finite systems: Femtosecond dynamics of iodide·(water)(n) anion clusters Science. 284: 635-638. DOI: 10.1126/science.284.5414.635  1
1999 Greenblatt BJ, Zanni MT, Neumark DM. Femtosecond photoelectron spectroscopy of I- 2(Ar)n clusters (n=6,9,12,16,20) Journal of Chemical Physics. 111: 10566-10577.  1
1999 Zanni MT, Greenblatt BJ, Davis AV, Neumark DM. Photodissociation of gas phase I3 - using femtosecond photoelectron spectroscopy Journal of Chemical Physics. 111: 2991-3003.  1
1999 Taylor TR, Asmis KR, Zanni MT, Neumark DM. Characterization of the I3 radical by anion photoelectron spectroscopy Journal of Chemical Physics. 110: 7607-7609.  1
1999 Zanni MT, Batista VS, Greenblatt BJ, Miller WH, Neumark DM. Femtosecond photoelectron spectroscopy of the I- 2 anion: Characterization of the Ã′ 2Πg,1/2 excited state Journal of Chemical Physics. 110: 3748-3755.  1
1999 Batista VS, Zanni MT, Greenblatt BJ, Neumark DM, Miller WH. Femtosecond photoelectron spectroscopy of the I- 2 anion: A semiclassical molecular dynamics simulation method Journal of Chemical Physics. 110: 3736-3747.  1
1998 Zanni MT, Greenblatt BJ, Davis AV, Neumark DM. Photodissociation dynamics of I3 - using femtosecond photoelectron spectroscopy Proceedings of Spie - the International Society For Optical Engineering. 3271: 196-207. DOI: 10.1117/12.308408  1
1998 Zanni MT, Greenblatt BJ, Neumark DM. Solvent effects on the vibrational frequency of I2 - in size-selected I2 -(Ar)n and I2 -(CO2)n clusters Journal of Chemical Physics. 109: 9648-9651. DOI: 10.1063/1.477631  1
1998 Zanni MT, Lehr L, Greenblatt BJ, Weinkauf R, Neumark DM. Dynamics of Charge-Transfer-To-Solvent precursor states in I-(D2O)n clusters Springer Series in Chemical Physics. 63: 474-478.  1
1997 Greenblatt BJ, Zanni MT, Neumark DM. Photodissociation of I2-(Ar)(n) clusters studied with anion femtosecond photoelectron spectroscopy Science. 276: 1675-1678. DOI: 10.1126/science.276.5319.1675  1
1997 Greenblatt BJ, Zanni MT, Neumark DM. Time-resolved studies of dynamics in molecular and cluster anions Faraday Discussions. 108: 101-113.  1
1997 Zanni MT, Taylor TR, Greenblatt BJ, Soep B, Neumark DM. Characterization of the I- 2 anion ground state using conventional and femtosecond photoelectron spectroscopy Journal of Chemical Physics. 107: 7613-7619.  1
1996 Greenblatt BJ, Zanni MT, Neumark DM. Photodissociation dynamics of the I- 2 anion using femtosecond photoelectron spectroscopy Chemical Physics Letters. 258: 523-529.  1
1995 Herrick DM, Wolfs FLH, Bryan DC, Freeman CG, Kurz KL, Mathews DH, Perera PAA, Zanni MT. Elastic scattering and quasielastic transfer for S32+96,100Mo at Elab=180 MeV Physical Review C. 52: 744-754. DOI: 10.1103/PhysRevC.52.744  1
1995 Freeman CG, Herrick DM, Bryan DC, Kurz KL, Mathews DH, Perera PAA, Wolfs FLH, Zanni MT. New focal plane detector system for the rochester recoil mass spectrometer Nuclear Inst. and Methods in Physics Research, A. 357: 450-457. DOI: 10.1016/0168-9002(94)01742-5  1
1995 Carpenter MA, Zanni MT, Farrar JM. Product-state-resolved study of the O- + D2 reaction: Anomalous vibrational-state distributions at low collision energies Journal of Physical Chemistry. 99: 1380-1383.  1
1994 Wolfs FLH, White CA, Bryan DC, Freeman CG, Herrick DM, Kurz KL, Mathews DH, Perera PAA, Zanni MT. Breakup of 87 MeV B11 Physical Review C. 49: 2538-2548. DOI: 10.1103/PhysRevC.49.2538  1
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